BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia22_contig00013847
         (2964 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...  1371   0.0  
ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prun...  1327   0.0  
ref|XP_007045723.1| DNA-directed RNA polymerase isoform 3 [Theob...  1306   0.0  
ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theob...  1306   0.0  
ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mi...  1299   0.0  
ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mi...  1294   0.0  
emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]  1290   0.0  
sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymeras...  1289   0.0  
gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus...  1285   0.0  
sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1285   0.0  
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...  1285   0.0  
dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymer...  1284   0.0  
emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]        1283   0.0  
ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/m...  1277   0.0  
ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Popu...  1271   0.0  
ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prun...  1259   0.0  
emb|CBI27412.3| unnamed protein product [Vitis vinifera]             1254   0.0  
ref|XP_006484275.1| PREDICTED: DNA-directed RNA polymerase 1B, m...  1245   0.0  
ref|XP_006437832.1| hypothetical protein CICLE_v10030633mg [Citr...  1245   0.0  
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras...  1243   0.0  

>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
            vinifera]
          Length = 978

 Score = 1371 bits (3549), Expect = 0.0
 Identities = 696/909 (76%), Positives = 756/909 (83%), Gaps = 3/909 (0%)
 Frame = -2

Query: 2720 MWRSIAKQAYXXXXXXXXXXXXXXXXXXSIKISQDSVFSQRIRPVGYSTYVNYRYPLPGF 2541
            MWR++AK AY                  + +      F  + R +    +VN   P+ G 
Sbjct: 1    MWRNLAKHAYTRRLQLSSQHSSFSPSNCTSRF----YFPDKARALESQDHVNSLRPVAGL 56

Query: 2540 NRIGGLSSQEDNSGRFSLAVSTNPFNISGFAHYSKGYXXXXXXXXXXXXXXDGSGVDEIH 2361
             RIG LS Q+D  GR    V+  P N  G   Y KGY                SGVDE+ 
Sbjct: 57   RRIGVLSFQQDELGRPGFGVTKTPVNFFGLFGYQKGYASAAEAIASEEDM---SGVDEVQ 113

Query: 2360 ELVAEVNKEDKMKSNFKQHRKLVDGMGQGKYNMLRRRQVKMETEAWEEAAKEYQELLVDM 2181
            ELV EVNK DK++    +  KL+ G+ QGK+N+LRRRQ+KMETEAWEEAAKEY+ELL DM
Sbjct: 114  ELVEEVNKGDKLE----KQPKLIGGVAQGKHNVLRRRQIKMETEAWEEAAKEYRELLSDM 169

Query: 2180 CEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLPADMMAVITX 2001
            CEQKLAPNLPY+KSLFLGW+EPLRD IA EQ+LCKQGKNR AYAPYF  LPADMMAVIT 
Sbjct: 170  CEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITM 229

Query: 2000 XXXXXXXXXXXXXGSARVVQAASQIGEALEHEVRIHSFLEKTKKKSIAKD-PKSESDPVI 1824
                         GSARVVQAA  IGEA+EHEVRI  F+EKTKKKS + + P   S+PV 
Sbjct: 230  HKLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPVT 289

Query: 1823 KEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKVGCRLIQLLMETAYIQPP 1644
            KE+ KLRKKV+ L+KKQKLQQVR+IVK +DDSKPWGQD  VKVG RLI+LL+ETAYIQPP
Sbjct: 290  KEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPP 349

Query: 1643 VDQLGDGPPDIRPAFVHTLKTVVKETH--SRRYGVIECDPLVRKGLEKSARHMVIPYMPM 1470
             DQLGDGPPDIRPAFVHTLKTV+KET   +RRYGVIECDPLVRKGLEK+ARHMVIPYMPM
Sbjct: 350  ADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPM 409

Query: 1469 LVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQLEPVFEALDTLGNAKWRI 1290
            LVPPLNW GYD+GAYLFLPSYVMR HGA+QQREA+KR  RK LEP FEAL+TLGN KWRI
Sbjct: 410  LVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKWRI 469

Query: 1289 NKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTEDEAEIRXXXXXXXXXXKENSERHS 1110
            NKRVL +IDRIW+SGG+LADLVDREDVPLPEEPDTEDEAEIR          KENSERHS
Sbjct: 470  NKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSERHS 529

Query: 1109 QRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPL 930
            QRCDIELKLAVARKMK+E+GF+YPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPL
Sbjct: 530  QRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPL 589

Query: 929  GKSGLRWLKIHVANLYAGGVDKLSYEGRVAFTENHVEDIFDSADRPLEGRRWWLGAEDPF 750
            GKSGLRWLKIH+AN+YAGGVDKLSYEGRVAFTENH+EDIFDSADRPLEGRRWWL AEDPF
Sbjct: 590  GKSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSAEDPF 649

Query: 749  QCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVTGEKP 570
            QCLA CINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLV GEKP
Sbjct: 650  QCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKP 709

Query: 569  ADVYSGIAARVLDIMRRDAEKDPAIEPDALRARFLIDQVDRKLVKQTVMTSVYGVTYIGA 390
            ADVYSGIAARVLDIM+RDA+KDPA EP+ALRAR LI QVDRKLVKQTVMTSVYGVTYIGA
Sbjct: 710  ADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTSVYGVTYIGA 769

Query: 389  RDQIKRRLKERCAITDDSELFAASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIASEN 210
            RDQIKRRLKERCAI D+ E+F+ASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIASEN
Sbjct: 770  RDQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIASEN 829

Query: 209  QPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVRRQRTAFPPNFVHSLDG 30
             PVRW TPLGLPVVQPYRKLGRHLIKTSLQVL+LQRETDKVMV+RQRTAFPPNFVHSLDG
Sbjct: 830  HPVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAFPPNFVHSLDG 889

Query: 29   SHMMMTAVA 3
            SHMMMTAVA
Sbjct: 890  SHMMMTAVA 898


>ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica]
            gi|462422319|gb|EMJ26582.1| hypothetical protein
            PRUPE_ppa000780mg [Prunus persica]
          Length = 1006

 Score = 1327 bits (3435), Expect = 0.0
 Identities = 669/926 (72%), Positives = 757/926 (81%), Gaps = 20/926 (2%)
 Frame = -2

Query: 2720 MWRSIAKQAYXXXXXXXXXXXXXXXXXXSIKISQDSVFSQRIRPVGYSTYVNYRYPLPGF 2541
            MWR++AKQ                    S+  SQ+S F  + R       +N R  + GF
Sbjct: 1    MWRNLAKQVASRKTNLSSQSHFGSPSSTSMIFSQESSFLDKARHFEARKCINNRILVMGF 60

Query: 2540 NRIGGLSSQEDNSGRFSLAVSTNPFNISGFAHYSKGYXXXXXXXXXXXXXXDGSGVDEIH 2361
             ++G ++SQ++  GR S    + P+ ISGF +Y+KGY              D SG +EI 
Sbjct: 61   RQVGDMASQKEELGRCSSLNPSYPYGISGFCNYAKGYASVAEAIASTDGEEDSSGSEEIQ 120

Query: 2360 ELVAEVNKEDKM-KSNFKQHRKLVDGMGQGKYNMLRRRQVKMETEAWEEAAKEYQELLVD 2184
            E++ ++ +E+ M +S+FKQ +++V GMG GKYN+LR+RQ+K+ETEAW+EAAKEYQELL D
Sbjct: 121  EMLEDLIRENNMVESHFKQPKRVVVGMGVGKYNLLRKRQIKLETEAWQEAAKEYQELLAD 180

Query: 2183 MCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLPADMMAVIT 2004
            MCEQKLAPNLPY+KSLFLGW+EPLRDAIA +Q+ CKQ  +R ++APYF  LPAD MAVIT
Sbjct: 181  MCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQDSCKQPNSRQSHAPYFDHLPADKMAVIT 240

Query: 2003 XXXXXXXXXXXXXXG-SARVVQAASQIGEALEHEVRIHSFLEKTKKKSIAKDPKSESDPV 1827
                            S RVVQAA  IGEA+EHEVRIH FLEKTKKK    D K+E+D V
Sbjct: 241  MHKLMGLLMTNNGGIGSVRVVQAACAIGEAIEHEVRIHRFLEKTKKKKNTIDKKAEADSV 300

Query: 1826 ----------------IKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKV 1695
                             KE+ +LRKKV  LIK+QK+QQVR IVK ++D KPWGQ+  VKV
Sbjct: 301  PVTIEQEKLADEQEKLTKEQERLRKKVNKLIKRQKMQQVRGIVKEQEDLKPWGQEAHVKV 360

Query: 1694 GCRLIQLLMETAYIQPPVDQLGDGPPDIRPAFVHTLKTVVKETH--SRRYGVIECDPLVR 1521
            GCRLIQLLM+TAYIQPPVDQ+GDGPPDIRPAFVH LKT+ ++T   SRRYGVIECDP+VR
Sbjct: 361  GCRLIQLLMDTAYIQPPVDQIGDGPPDIRPAFVHNLKTITRDTQKTSRRYGVIECDPIVR 420

Query: 1520 KGLEKSARHMVIPYMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQL 1341
            KG+EK+ARHMV+PYMPMLVPP+NW GYDRGAYLFLPSYVMRTHGAKQQRE VKRT RKQL
Sbjct: 421  KGMEKTARHMVMPYMPMLVPPINWTGYDRGAYLFLPSYVMRTHGAKQQREVVKRTPRKQL 480

Query: 1340 EPVFEALDTLGNAKWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTEDEAEIRX 1161
            EPVFEALDTLG+ KWR+NKRVL +IDRIW+SGG+LADLVDREDVPLPEEPDTEDEAEIR 
Sbjct: 481  EPVFEALDTLGSTKWRVNKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRK 540

Query: 1160 XXXXXXXXXKENSERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHL 981
                     KENSERHSQRCDIELKLA +RKMK+EEGFYYPHNLDFRGRAYPMHP+LNHL
Sbjct: 541  WKWKLKAAKKENSERHSQRCDIELKLAASRKMKDEEGFYYPHNLDFRGRAYPMHPYLNHL 600

Query: 980  GSDLCRGILEFAEGRPLGKSGLRWLKIHVANLYAGGVDKLSYEGRVAFTENHVEDIFDSA 801
            GSD+CRGILEF+EGR LGKSGLRWLKIH+ANLYAGGVDKLS++ R AFTENHV++IFDSA
Sbjct: 601  GSDMCRGILEFSEGRHLGKSGLRWLKIHLANLYAGGVDKLSFDDRAAFTENHVDEIFDSA 660

Query: 800  DRPLEGRRWWLGAEDPFQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALG 621
            DRPLEGRRWWLGAEDPFQCLAACINL EALRS SPETTIS+MPVHQDGSCNGLQHYAALG
Sbjct: 661  DRPLEGRRWWLGAEDPFQCLAACINLCEALRSPSPETTISYMPVHQDGSCNGLQHYAALG 720

Query: 620  RDKLGAAAVNLVTGEKPADVYSGIAARVLDIMRRDAEKDPAIEPDALRARFLIDQVDRKL 441
            RDKLGAAAVNLV G+KPADVYSGIAARVLDIMR DAEKDPA  P+AL AR LI+QVDRKL
Sbjct: 721  RDKLGAAAVNLVGGDKPADVYSGIAARVLDIMRNDAEKDPATNPNALHARLLINQVDRKL 780

Query: 440  VKQTVMTSVYGVTYIGARDQIKRRLKERCAITDDSELFAASCYAAKTTLTALGEMFEAAR 261
            VKQTVMTSVYGVTY+GARDQIKRRLKER +I DD+ LFAA+CYAA+TTLTALGEMFEAAR
Sbjct: 781  VKQTVMTSVYGVTYVGARDQIKRRLKERGSIADDTALFAAACYAARTTLTALGEMFEAAR 840

Query: 260  SIMSWLGDCAKVIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMV 81
            SIMSWLG+CAKVIASENQPVRW TPLGLPVVQPYR+LGRHLIKTSLQVLTLQRETDKVMV
Sbjct: 841  SIMSWLGECAKVIASENQPVRWITPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKVMV 900

Query: 80   RRQRTAFPPNFVHSLDGSHMMMTAVA 3
            +RQRTAFPPNFVHSLDGSHMMMTAVA
Sbjct: 901  KRQRTAFPPNFVHSLDGSHMMMTAVA 926


>ref|XP_007045723.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
            gi|508709658|gb|EOY01555.1| DNA-directed RNA polymerase
            isoform 3 [Theobroma cacao]
          Length = 932

 Score = 1306 bits (3379), Expect = 0.0
 Identities = 664/919 (72%), Positives = 744/919 (80%), Gaps = 13/919 (1%)
 Frame = -2

Query: 2720 MWRSIAKQAYXXXXXXXXXXXXXXXXXXSIK--ISQDSVFSQRIRPVGYSTYVNYRYPLP 2547
            MWRS+ KQA                         SQDSVF+ ++R         Y    P
Sbjct: 1    MWRSLVKQAAYREKFKFVAEPYTCSLSSCSATGFSQDSVFANKVRASEARANGFYGCLFP 60

Query: 2546 GFNRIGGLSSQEDNSGRFSLAVSTNPFNISGFAHYSKGYXXXXXXXXXXXXXXDGSGVDE 2367
            GF +IG  SSQ+D+ G+FSL    +P   SG     KGY               GS  +E
Sbjct: 61   GFRQIGVFSSQKDDLGKFSLNQPGDPLRFSGKFWNLKGYASAAEAVISTEEDMSGS--EE 118

Query: 2366 IHELVAEVNKEDKMKSNFKQHRKLVDGMGQGKYNMLRRRQVKMETEAWEEAAKEYQELLV 2187
            IHEL+  + +E+K  S   Q +K+ +GMG  KYN L++RQ+K+ETEAWEEAAKEYQELL+
Sbjct: 119  IHELMEAMAREEKKMSFLVQPKKVAEGMGVAKYNTLKKRQIKIETEAWEEAAKEYQELLM 178

Query: 2186 DMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLPADMMAVI 2007
            DMCE KLAPNLPY+KSLFLGW+EPLRD+I  EQELCK+   R+++A YF  L ADMMAV+
Sbjct: 179  DMCEHKLAPNLPYIKSLFLGWFEPLRDSIVGEQELCKENC-RISHAAYFNELSADMMAVV 237

Query: 2006 TXXXXXXXXXXXXXXGSA-RVVQAASQIGEALEHEVRIHSFLEKTKKKSIA-KDPKSESD 1833
            T                  RVVQAA QIGEA+EHE +I SFL KTKKK    K P  ES+
Sbjct: 238  TMHKLMGLLMTNTAGTGGIRVVQAACQIGEAIEHEAKIQSFLGKTKKKKTTDKKPDGESE 297

Query: 1832 PV-------IKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKVGCRLIQL 1674
            PV       +K++ KLRKKVT L+KKQK+ QVR+IVKG D SK WGQ+  VKVGCRLIQL
Sbjct: 298  PVTNKQEKLVKDQEKLRKKVTQLLKKQKVHQVRKIVKGHDTSKSWGQEAHVKVGCRLIQL 357

Query: 1673 LMETAYIQPPVDQLGDGPPDIRPAFVHTLKTVVKETH--SRRYGVIECDPLVRKGLEKSA 1500
            L+E AYIQPPVDQLGD PPDIRPAFVH+LKT+ K+ +  SRRYGVIECD LVRKGLEK+A
Sbjct: 358  LIENAYIQPPVDQLGDCPPDIRPAFVHSLKTITKDGNKGSRRYGVIECDLLVRKGLEKTA 417

Query: 1499 RHMVIPYMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQLEPVFEAL 1320
            RHMVIPYMPMLVPP NW GYDRGAYLFLPSYVMRTHGAKQQRE VKRT RKQLEP+FEAL
Sbjct: 418  RHMVIPYMPMLVPPQNWTGYDRGAYLFLPSYVMRTHGAKQQRETVKRTPRKQLEPIFEAL 477

Query: 1319 DTLGNAKWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTEDEAEIRXXXXXXXX 1140
            DTLGN KWRINKRVL ++DR+W++GG++A LVDREDVPLPE+PDTEDEAEI+        
Sbjct: 478  DTLGNTKWRINKRVLGVVDRLWANGGRVASLVDREDVPLPEKPDTEDEAEIQKWKWKVKA 537

Query: 1139 XXKENSERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRG 960
              K+N+ERHS RCD+ELKLAVARKM++E+GFYYPHNLDFRGRAYPMHP+LNHLGSDLCRG
Sbjct: 538  ANKQNNERHSLRCDVELKLAVARKMRDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRG 597

Query: 959  ILEFAEGRPLGKSGLRWLKIHVANLYAGGVDKLSYEGRVAFTENHVEDIFDSADRPLEGR 780
            +LEFAEGRPLGKSGLRWLKIH+ANLYAGGVDKLSYEGR+AFTENH++DIFDSADRPLEGR
Sbjct: 598  VLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYEGRIAFTENHLDDIFDSADRPLEGR 657

Query: 779  RWWLGAEDPFQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAA 600
            RWWL AEDPFQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAA
Sbjct: 658  RWWLSAEDPFQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAA 717

Query: 599  AVNLVTGEKPADVYSGIAARVLDIMRRDAEKDPAIEPDALRARFLIDQVDRKLVKQTVMT 420
            +VNLV GEKPADVYSGIAARV+DIMRRDAEKDPAI P AL AR LI+QVDRKLVKQTVMT
Sbjct: 718  SVNLVAGEKPADVYSGIAARVVDIMRRDAEKDPAINPHALHARLLINQVDRKLVKQTVMT 777

Query: 419  SVYGVTYIGARDQIKRRLKERCAITDDSELFAASCYAAKTTLTALGEMFEAARSIMSWLG 240
            SVYGVTYIGARDQIKRRLKERCAI DD+E+F ASCYAA+TTLTALGEMF+AARSIM+WLG
Sbjct: 778  SVYGVTYIGARDQIKRRLKERCAIADDTEMFVASCYAARTTLTALGEMFQAARSIMNWLG 837

Query: 239  DCAKVIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVRRQRTAF 60
            +CAKVI+SENQPVRW TPLGLPVVQPYR+LGRHLIKTSLQVLTLQRETDKVM +RQRTAF
Sbjct: 838  ECAKVISSENQPVRWVTPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKVMAKRQRTAF 897

Query: 59   PPNFVHSLDGSHMMMTAVA 3
            PPNFVHSLDGSHMMMTAVA
Sbjct: 898  PPNFVHSLDGSHMMMTAVA 916


>ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
            gi|590698457|ref|XP_007045722.1| DNA-directed RNA
            polymerase isoform 1 [Theobroma cacao]
            gi|508709656|gb|EOY01553.1| DNA-directed RNA polymerase
            isoform 1 [Theobroma cacao] gi|508709657|gb|EOY01554.1|
            DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
          Length = 996

 Score = 1306 bits (3379), Expect = 0.0
 Identities = 664/919 (72%), Positives = 744/919 (80%), Gaps = 13/919 (1%)
 Frame = -2

Query: 2720 MWRSIAKQAYXXXXXXXXXXXXXXXXXXSIK--ISQDSVFSQRIRPVGYSTYVNYRYPLP 2547
            MWRS+ KQA                         SQDSVF+ ++R         Y    P
Sbjct: 1    MWRSLVKQAAYREKFKFVAEPYTCSLSSCSATGFSQDSVFANKVRASEARANGFYGCLFP 60

Query: 2546 GFNRIGGLSSQEDNSGRFSLAVSTNPFNISGFAHYSKGYXXXXXXXXXXXXXXDGSGVDE 2367
            GF +IG  SSQ+D+ G+FSL    +P   SG     KGY               GS  +E
Sbjct: 61   GFRQIGVFSSQKDDLGKFSLNQPGDPLRFSGKFWNLKGYASAAEAVISTEEDMSGS--EE 118

Query: 2366 IHELVAEVNKEDKMKSNFKQHRKLVDGMGQGKYNMLRRRQVKMETEAWEEAAKEYQELLV 2187
            IHEL+  + +E+K  S   Q +K+ +GMG  KYN L++RQ+K+ETEAWEEAAKEYQELL+
Sbjct: 119  IHELMEAMAREEKKMSFLVQPKKVAEGMGVAKYNTLKKRQIKIETEAWEEAAKEYQELLM 178

Query: 2186 DMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLPADMMAVI 2007
            DMCE KLAPNLPY+KSLFLGW+EPLRD+I  EQELCK+   R+++A YF  L ADMMAV+
Sbjct: 179  DMCEHKLAPNLPYIKSLFLGWFEPLRDSIVGEQELCKENC-RISHAAYFNELSADMMAVV 237

Query: 2006 TXXXXXXXXXXXXXXGSA-RVVQAASQIGEALEHEVRIHSFLEKTKKKSIA-KDPKSESD 1833
            T                  RVVQAA QIGEA+EHE +I SFL KTKKK    K P  ES+
Sbjct: 238  TMHKLMGLLMTNTAGTGGIRVVQAACQIGEAIEHEAKIQSFLGKTKKKKTTDKKPDGESE 297

Query: 1832 PV-------IKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKVGCRLIQL 1674
            PV       +K++ KLRKKVT L+KKQK+ QVR+IVKG D SK WGQ+  VKVGCRLIQL
Sbjct: 298  PVTNKQEKLVKDQEKLRKKVTQLLKKQKVHQVRKIVKGHDTSKSWGQEAHVKVGCRLIQL 357

Query: 1673 LMETAYIQPPVDQLGDGPPDIRPAFVHTLKTVVKETH--SRRYGVIECDPLVRKGLEKSA 1500
            L+E AYIQPPVDQLGD PPDIRPAFVH+LKT+ K+ +  SRRYGVIECD LVRKGLEK+A
Sbjct: 358  LIENAYIQPPVDQLGDCPPDIRPAFVHSLKTITKDGNKGSRRYGVIECDLLVRKGLEKTA 417

Query: 1499 RHMVIPYMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQLEPVFEAL 1320
            RHMVIPYMPMLVPP NW GYDRGAYLFLPSYVMRTHGAKQQRE VKRT RKQLEP+FEAL
Sbjct: 418  RHMVIPYMPMLVPPQNWTGYDRGAYLFLPSYVMRTHGAKQQRETVKRTPRKQLEPIFEAL 477

Query: 1319 DTLGNAKWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTEDEAEIRXXXXXXXX 1140
            DTLGN KWRINKRVL ++DR+W++GG++A LVDREDVPLPE+PDTEDEAEI+        
Sbjct: 478  DTLGNTKWRINKRVLGVVDRLWANGGRVASLVDREDVPLPEKPDTEDEAEIQKWKWKVKA 537

Query: 1139 XXKENSERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRG 960
              K+N+ERHS RCD+ELKLAVARKM++E+GFYYPHNLDFRGRAYPMHP+LNHLGSDLCRG
Sbjct: 538  ANKQNNERHSLRCDVELKLAVARKMRDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRG 597

Query: 959  ILEFAEGRPLGKSGLRWLKIHVANLYAGGVDKLSYEGRVAFTENHVEDIFDSADRPLEGR 780
            +LEFAEGRPLGKSGLRWLKIH+ANLYAGGVDKLSYEGR+AFTENH++DIFDSADRPLEGR
Sbjct: 598  VLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYEGRIAFTENHLDDIFDSADRPLEGR 657

Query: 779  RWWLGAEDPFQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAA 600
            RWWL AEDPFQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAA
Sbjct: 658  RWWLSAEDPFQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAA 717

Query: 599  AVNLVTGEKPADVYSGIAARVLDIMRRDAEKDPAIEPDALRARFLIDQVDRKLVKQTVMT 420
            +VNLV GEKPADVYSGIAARV+DIMRRDAEKDPAI P AL AR LI+QVDRKLVKQTVMT
Sbjct: 718  SVNLVAGEKPADVYSGIAARVVDIMRRDAEKDPAINPHALHARLLINQVDRKLVKQTVMT 777

Query: 419  SVYGVTYIGARDQIKRRLKERCAITDDSELFAASCYAAKTTLTALGEMFEAARSIMSWLG 240
            SVYGVTYIGARDQIKRRLKERCAI DD+E+F ASCYAA+TTLTALGEMF+AARSIM+WLG
Sbjct: 778  SVYGVTYIGARDQIKRRLKERCAIADDTEMFVASCYAARTTLTALGEMFQAARSIMNWLG 837

Query: 239  DCAKVIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVRRQRTAF 60
            +CAKVI+SENQPVRW TPLGLPVVQPYR+LGRHLIKTSLQVLTLQRETDKVM +RQRTAF
Sbjct: 838  ECAKVISSENQPVRWVTPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKVMAKRQRTAF 897

Query: 59   PPNFVHSLDGSHMMMTAVA 3
            PPNFVHSLDGSHMMMTAVA
Sbjct: 898  PPNFVHSLDGSHMMMTAVA 916


>ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
            tuberosum]
          Length = 993

 Score = 1299 bits (3362), Expect = 0.0
 Identities = 637/792 (80%), Positives = 706/792 (89%), Gaps = 2/792 (0%)
 Frame = -2

Query: 2375 VDEIHELVAEVNKEDK-MKSNFKQHR-KLVDGMGQGKYNMLRRRQVKMETEAWEEAAKEY 2202
            +DEI EL+ E+NKE++ +K+N +  + K V GMG GKYN+LRRRQ+K+ETEAWE+AAKEY
Sbjct: 121  IDEIQELIEEMNKENEALKTNLQPKQPKTVGGMGIGKYNLLRRRQIKVETEAWEDAAKEY 180

Query: 2201 QELLVDMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLPAD 2022
            QELL+DMCEQKLAPNLPY+KSLFLGW+EPLRDAIA EQ+LC +GKNR AYAP+F  LPA+
Sbjct: 181  QELLMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAE 240

Query: 2021 MMAVITXXXXXXXXXXXXXXGSARVVQAASQIGEALEHEVRIHSFLEKTKKKSIAKDPKS 1842
            MMAVIT              GSARVVQAAS IGEA+EHE RIH FLEKTKK ++    + 
Sbjct: 241  MMAVITMHKLMGLLMTGGGSGSARVVQAASHIGEAIEHEARIHRFLEKTKKNALDGSLEE 300

Query: 1841 ESDPVIKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKVGCRLIQLLMET 1662
             +  ++KE  +LRKKV  L+KKQKLQQVR+IVK +DD KPWGQD  VKVGC+LIQ+L+ET
Sbjct: 301  TAGDIMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCKLIQILIET 360

Query: 1661 AYIQPPVDQLGDGPPDIRPAFVHTLKTVVKETHSRRYGVIECDPLVRKGLEKSARHMVIP 1482
            AYIQPP DQL D PPDIRPAF+HTLKTV     SRRYGVI+CDPLVRKGL+K+ARHMVIP
Sbjct: 361  AYIQPPNDQLDDCPPDIRPAFMHTLKTVETVKGSRRYGVIQCDPLVRKGLDKTARHMVIP 420

Query: 1481 YMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQLEPVFEALDTLGNA 1302
            YMPMLVPP NW GYDRGAYLFLPSY+MRTHGAKQQREAVKR  +KQLEPVF+ALDTLGN 
Sbjct: 421  YMPMLVPPQNWSGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNT 480

Query: 1301 KWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTEDEAEIRXXXXXXXXXXKENS 1122
            KWR+NKRVL I+DRIW+SGG+LADLVDREDVPLPEEPDTEDE EI+          KEN 
Sbjct: 481  KWRVNKRVLGILDRIWASGGRLADLVDREDVPLPEEPDTEDEEEIKKWKWKVKAAKKENC 540

Query: 1121 ERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAE 942
            ERHSQRCDIELKLAVARKMK+EEGFYYPHNLDFRGRAYPMHP+LNHLGSDLCRGILEF+E
Sbjct: 541  ERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFSE 600

Query: 941  GRPLGKSGLRWLKIHVANLYAGGVDKLSYEGRVAFTENHVEDIFDSADRPLEGRRWWLGA 762
            GRPLGKSGLRWLKIH+AN+Y GGVDKLSYEGR AF+ENHVEDIFDSADRPLEGRRWWLGA
Sbjct: 601  GRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRAAFSENHVEDIFDSADRPLEGRRWWLGA 660

Query: 761  EDPFQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVT 582
            EDPFQCLA CIN+SEALRS SPET+ISHMP+HQDGSCNGLQHYAALGRDKLGAAAVNLV 
Sbjct: 661  EDPFQCLATCINISEALRSPSPETSISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVA 720

Query: 581  GEKPADVYSGIAARVLDIMRRDAEKDPAIEPDALRARFLIDQVDRKLVKQTVMTSVYGVT 402
            G+KPADVYSGIAARVLDIM+RDA+KDPA +P+ +RAR LI+QVDRKLVKQTVMTSVYGVT
Sbjct: 721  GDKPADVYSGIAARVLDIMKRDADKDPATDPNVMRARLLINQVDRKLVKQTVMTSVYGVT 780

Query: 401  YIGARDQIKRRLKERCAITDDSELFAASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVI 222
            YIGARDQIKRRLKER AI DD+ELF+A+CYAAKTTLTALGEMFEAARSIMSWLGDCAK+I
Sbjct: 781  YIGARDQIKRRLKERGAIEDDNELFSAACYAAKTTLTALGEMFEAARSIMSWLGDCAKII 840

Query: 221  ASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVRRQRTAFPPNFVH 42
            A ENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQ+LTLQRETDKVMV+RQRTAFPPNFVH
Sbjct: 841  AMENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVH 900

Query: 41   SLDGSHMMMTAV 6
            SLDGSHMMMTA+
Sbjct: 901  SLDGSHMMMTAI 912


>ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
            lycopersicum]
          Length = 993

 Score = 1294 bits (3348), Expect = 0.0
 Identities = 636/793 (80%), Positives = 706/793 (89%), Gaps = 2/793 (0%)
 Frame = -2

Query: 2375 VDEIHELVAEVNKEDK-MKSNFKQHR-KLVDGMGQGKYNMLRRRQVKMETEAWEEAAKEY 2202
            +DEI EL+ E+NKE++ +K+N +  + K V GMG GKYN+LRRRQ+K+ETEAWE+AAKEY
Sbjct: 121  IDEIQELIEEMNKENEALKTNLQPKQPKTVGGMGIGKYNLLRRRQIKVETEAWEDAAKEY 180

Query: 2201 QELLVDMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLPAD 2022
            QELL+DMCEQKLAPNLPY+KSLFLGW+EPL+DAIA EQ+LC +GKNR AYAP+F  LPA+
Sbjct: 181  QELLMDMCEQKLAPNLPYIKSLFLGWFEPLKDAIAAEQKLCDEGKNRGAYAPFFDQLPAE 240

Query: 2021 MMAVITXXXXXXXXXXXXXXGSARVVQAASQIGEALEHEVRIHSFLEKTKKKSIAKDPKS 1842
            MMAVIT              GSARVVQAAS IGEA+EHE RIH FLEKTKK ++    + 
Sbjct: 241  MMAVITMHKLMGLLMTGGGSGSARVVQAASHIGEAIEHEARIHRFLEKTKKNALDGSLEE 300

Query: 1841 ESDPVIKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKVGCRLIQLLMET 1662
             +  ++KE  +LRKKV  L+KKQKLQQVR+IVK +DD KPWGQD  VKVGCRLIQ+L+ET
Sbjct: 301  TAGDIMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILIET 360

Query: 1661 AYIQPPVDQLGDGPPDIRPAFVHTLKTVVKETHSRRYGVIECDPLVRKGLEKSARHMVIP 1482
            AYIQPP DQL D PPDIRPAF+HTLKTV     SRRYGVI+CDPLVRKGL+K+ARHMVIP
Sbjct: 361  AYIQPPNDQLEDCPPDIRPAFMHTLKTVDTVKGSRRYGVIQCDPLVRKGLDKTARHMVIP 420

Query: 1481 YMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQLEPVFEALDTLGNA 1302
            YMPMLVPP NW GYDRGAYLFLPSY+MRTHGAKQQREAVKR  +KQLEPVF+ALDTLGN 
Sbjct: 421  YMPMLVPPQNWSGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNT 480

Query: 1301 KWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTEDEAEIRXXXXXXXXXXKENS 1122
            KWR+NKRVL I+DRIW+SGG+LADLVDREDVPLPEEPDTE+E EI+          KEN 
Sbjct: 481  KWRVNKRVLGILDRIWASGGRLADLVDREDVPLPEEPDTENEEEIKKWKWKVKAAKKENC 540

Query: 1121 ERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAE 942
            ERHSQRCDIELKLAVARKMK+EEGFYYPHNLDFRGRAYPMHP+LNHLGSDLCRGILEF+E
Sbjct: 541  ERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFSE 600

Query: 941  GRPLGKSGLRWLKIHVANLYAGGVDKLSYEGRVAFTENHVEDIFDSADRPLEGRRWWLGA 762
            GRPLGKSGLRWLKIH+AN+Y GGVDKLS EGR AF+ENHVEDIFDSADRPLEGRRWWLGA
Sbjct: 601  GRPLGKSGLRWLKIHLANVYGGGVDKLSCEGRAAFSENHVEDIFDSADRPLEGRRWWLGA 660

Query: 761  EDPFQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVT 582
            EDPFQCLA CI++SEALRS SPET+ISHMP+HQDGSCNGLQHYAALGRDKLGAAAVNLV 
Sbjct: 661  EDPFQCLATCISISEALRSPSPETSISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVA 720

Query: 581  GEKPADVYSGIAARVLDIMRRDAEKDPAIEPDALRARFLIDQVDRKLVKQTVMTSVYGVT 402
            G+KPADVYSGIAARVLDIM+RDA+KDPA +P+ +RAR LI+QVDRKLVKQTVMTSVYGVT
Sbjct: 721  GDKPADVYSGIAARVLDIMKRDADKDPATDPNVMRARLLINQVDRKLVKQTVMTSVYGVT 780

Query: 401  YIGARDQIKRRLKERCAITDDSELFAASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVI 222
            YIGARDQIKRRLKER AI DD+ELFAA+CYAAKTTLTALGEMFEAARSIMSWLGDCAK+I
Sbjct: 781  YIGARDQIKRRLKERGAIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKII 840

Query: 221  ASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVRRQRTAFPPNFVH 42
            A ENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQ+LTLQRETDKVMV+RQRTAFPPNFVH
Sbjct: 841  AMENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVH 900

Query: 41   SLDGSHMMMTAVA 3
            SLDGSHMMMTA+A
Sbjct: 901  SLDGSHMMMTAIA 913


>emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score = 1290 bits (3338), Expect = 0.0
 Identities = 634/794 (79%), Positives = 705/794 (88%), Gaps = 3/794 (0%)
 Frame = -2

Query: 2375 VDEIHELVAEVNKEDK-MKSNFKQHR-KLVDGMGQGKYNMLRRRQVKMETEAWEEAAKEY 2202
            +DEI EL+ E+NKE++ +K+N +  + K + GMG GKYN+LRRRQ+K+ETEAWEEAAKEY
Sbjct: 129  IDEIQELIEEMNKENEALKTNLQPKQPKTIGGMGVGKYNLLRRRQIKVETEAWEEAAKEY 188

Query: 2201 QELLVDMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLPAD 2022
            QELL+DMCEQKLAPNLPYMKSLFLGW+EPLRDAIA EQ+LC +GKNR AYAP+F  LPA+
Sbjct: 189  QELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAE 248

Query: 2021 MMAVITXXXXXXXXXXXXXXGSARVVQAASQIGEALEHEVRIHSFLEKTKKKS-IAKDPK 1845
            MMAVIT              GSARVVQAAS IGEA+EHE RIH FLEKTKK + ++ D +
Sbjct: 249  MMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEARIHRFLEKTKKSNALSGDLE 308

Query: 1844 SESDPVIKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKVGCRLIQLLME 1665
                 ++KE  +LRKKV  L+KKQKLQQVR+IVK +DD KPWGQD  VKVGCRLIQ+LME
Sbjct: 309  DTPGDIMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILME 368

Query: 1664 TAYIQPPVDQLGDGPPDIRPAFVHTLKTVVKETHSRRYGVIECDPLVRKGLEKSARHMVI 1485
            TAYIQPP DQL D PPDIRPAFVHTLKTV     SRRYGVI+CDPLVRKGL+K+ARHMVI
Sbjct: 369  TAYIQPPNDQLDDCPPDIRPAFVHTLKTVETMKGSRRYGVIQCDPLVRKGLDKTARHMVI 428

Query: 1484 PYMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQLEPVFEALDTLGN 1305
            PYMPMLVPP +W+GYD+GAYLFLPSY+MRTHGAKQQREAVKR  +KQLEPVF+ALDTLGN
Sbjct: 429  PYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGN 488

Query: 1304 AKWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTEDEAEIRXXXXXXXXXXKEN 1125
             KWR+N++VL I+DRIW+SGG+LADLVDREDVPLPEEPD EDEA+IR          KEN
Sbjct: 489  TKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAEDEAQIRKWKWKVKGVKKEN 548

Query: 1124 SERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFA 945
             ERHSQRCDIELKLAVARKMK+E+GFYYPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFA
Sbjct: 549  CERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFA 608

Query: 944  EGRPLGKSGLRWLKIHVANLYAGGVDKLSYEGRVAFTENHVEDIFDSADRPLEGRRWWLG 765
            EGRPLGKSGLRWLKIH+AN+Y GGVDKLSYEGRVAF+ENHVEDIFDSA+RPLEG+RWWLG
Sbjct: 609  EGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHVEDIFDSAERPLEGKRWWLG 668

Query: 764  AEDPFQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLV 585
            AEDPFQCLA CIN++EALRS SPET IS+MP+HQDGSCNGLQHYAALGRD LGAAAVNLV
Sbjct: 669  AEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDTLGAAAVNLV 728

Query: 584  TGEKPADVYSGIAARVLDIMRRDAEKDPAIEPDALRARFLIDQVDRKLVKQTVMTSVYGV 405
             G+KPADVYSGIAARVLDIM+RDA KDPA +P+ +RAR LI+QVDRKLVKQTVMTSVYGV
Sbjct: 729  AGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGV 788

Query: 404  TYIGARDQIKRRLKERCAITDDSELFAASCYAAKTTLTALGEMFEAARSIMSWLGDCAKV 225
            TYIGARDQIKRRLKER  I DD+ELFAA+CYAAKTTLTALGEMFEAARSIMSWLGDCAK+
Sbjct: 789  TYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKI 848

Query: 224  IASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVRRQRTAFPPNFV 45
            IA EN PVRWTTPLGLPVVQPYRKLGRHLIKTSLQ+LTLQRETDKVMV+RQRTAFPPNFV
Sbjct: 849  IAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFV 908

Query: 44   HSLDGSHMMMTAVA 3
            HSLDGSHMMMTA+A
Sbjct: 909  HSLDGSHMMMTAIA 922


>sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; AltName:
            Full=NsRpoT-A; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 1; Flags: Precursor
            gi|15824083|dbj|BAB69431.1| T7 bacteriophage-type single
            subunit RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score = 1289 bits (3335), Expect = 0.0
 Identities = 633/794 (79%), Positives = 705/794 (88%), Gaps = 3/794 (0%)
 Frame = -2

Query: 2375 VDEIHELVAEVNKEDK-MKSNFKQHR-KLVDGMGQGKYNMLRRRQVKMETEAWEEAAKEY 2202
            +DEI EL+ E+NKE++ +K+N +  + K + GMG GKYN+LRRRQ+K+ETEAWEEAAKEY
Sbjct: 129  IDEIQELIEEMNKENEALKTNLQPKQPKTIGGMGVGKYNLLRRRQIKVETEAWEEAAKEY 188

Query: 2201 QELLVDMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLPAD 2022
            QELL+DMCEQKLAPNLPYMKSLFLGW+EPLRDAIA EQ+LC +GKNR AYAP+F  LPA+
Sbjct: 189  QELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAE 248

Query: 2021 MMAVITXXXXXXXXXXXXXXGSARVVQAASQIGEALEHEVRIHSFLEKTKKKS-IAKDPK 1845
            MMAVIT              GSARVVQAAS IGEA+EHE RIH FLEKTKK + ++ D +
Sbjct: 249  MMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEARIHRFLEKTKKSNALSGDLE 308

Query: 1844 SESDPVIKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKVGCRLIQLLME 1665
                 ++KE  ++RKKV  L+KKQKLQQVR+IVK +DD KPWGQD  VKVGCRLIQ+LME
Sbjct: 309  DTPGDIMKERERVRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILME 368

Query: 1664 TAYIQPPVDQLGDGPPDIRPAFVHTLKTVVKETHSRRYGVIECDPLVRKGLEKSARHMVI 1485
            TAYIQPP DQL D PPDIRPAFVHTLKTV     SRRYGVI+CDPLVRKGL+K+ARHMVI
Sbjct: 369  TAYIQPPNDQLDDCPPDIRPAFVHTLKTVETMKGSRRYGVIQCDPLVRKGLDKTARHMVI 428

Query: 1484 PYMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQLEPVFEALDTLGN 1305
            PYMPMLVPP +W+GYD+GAYLFLPSY+MRTHGAKQQREAVKR  +KQLEPVF+ALDTLGN
Sbjct: 429  PYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGN 488

Query: 1304 AKWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTEDEAEIRXXXXXXXXXXKEN 1125
             KWR+N++VL I+DRIW+SGG+LADLVDREDVPLPEEPD EDEA+IR          KEN
Sbjct: 489  TKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAEDEAQIRKWKWKVKGVKKEN 548

Query: 1124 SERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFA 945
             ERHSQRCDIELKLAVARKMK+E+GFYYPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFA
Sbjct: 549  CERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFA 608

Query: 944  EGRPLGKSGLRWLKIHVANLYAGGVDKLSYEGRVAFTENHVEDIFDSADRPLEGRRWWLG 765
            EGRPLGKSGLRWLKIH+AN+Y GGVDKLSYEGRVAF+ENHVEDIFDSA+RPLEG+RWWLG
Sbjct: 609  EGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHVEDIFDSAERPLEGKRWWLG 668

Query: 764  AEDPFQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLV 585
            AEDPFQCLA CIN++EALRS SPET IS+MP+HQDGSCNGLQHYAALGRD LGAAAVNLV
Sbjct: 669  AEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDTLGAAAVNLV 728

Query: 584  TGEKPADVYSGIAARVLDIMRRDAEKDPAIEPDALRARFLIDQVDRKLVKQTVMTSVYGV 405
             G+KPADVYSGIAARVLDIM+RDA KDPA +P+ +RAR LI+QVDRKLVKQTVMTSVYGV
Sbjct: 729  AGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGV 788

Query: 404  TYIGARDQIKRRLKERCAITDDSELFAASCYAAKTTLTALGEMFEAARSIMSWLGDCAKV 225
            TYIGARDQIKRRLKER  I DD+ELFAA+CYAAKTTLTALGEMFEAARSIMSWLGDCAK+
Sbjct: 789  TYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKI 848

Query: 224  IASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVRRQRTAFPPNFV 45
            IA EN PVRWTTPLGLPVVQPYRKLGRHLIKTSLQ+LTLQRETDKVMV+RQRTAFPPNFV
Sbjct: 849  IAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFV 908

Query: 44   HSLDGSHMMMTAVA 3
            HSLDGSHMMMTA+A
Sbjct: 909  HSLDGSHMMMTAIA 922


>gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus guttatus]
          Length = 983

 Score = 1285 bits (3326), Expect = 0.0
 Identities = 644/910 (70%), Positives = 737/910 (80%), Gaps = 4/910 (0%)
 Frame = -2

Query: 2720 MWRSIAKQAYXXXXXXXXXXXXXXXXXXSIKISQDSVFSQRIRPVGYSTYVNYRYPLPGF 2541
            MWR+++KQ+Y                  + K  +DS+F +   P    + +N      GF
Sbjct: 1    MWRNLSKQSYLRNFKVFSESHPSPNAFSAGKSPKDSIFVENAVPRQLRSCINTCGSELGF 60

Query: 2540 NRIGGLSSQEDNSGRFSLAVSTNPFNISGFAHYSKGYXXXXXXXXXXXXXXDGSGVDEIH 2361
             R          +   + A+S++ F   G    ++GY                  VDE+ 
Sbjct: 61   RRALVFWRPPREASCPNYAISSHTFRFFGS---TRGYAAAAEALVSTSEEE----VDELQ 113

Query: 2360 ELVAEVNKEDKMKSNFKQHRK---LVDGMGQGKYNMLRRRQVKMETEAWEEAAKEYQELL 2190
            EL+ E+NKE  +KS   + +K   LV GMG GKYN LRRRQ+K+ETEAWE AAKEYQELL
Sbjct: 114  ELIEEINKEINVKSTDNREQKQPKLVGGMGLGKYNSLRRRQIKIETEAWENAAKEYQELL 173

Query: 2189 VDMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLPADMMAV 2010
             DMCEQKLAPNLPY+KSLFLGW+EPLRDAIA EQ+LCK+GKNR AYAPYF  LPA+MMAV
Sbjct: 174  EDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDLCKEGKNRGAYAPYFDQLPAEMMAV 233

Query: 2009 ITXXXXXXXXXXXXXXGSARVVQAASQIGEALEHEVRIHSFLEKTKKKSIAKDPKSES-D 1833
            IT              GSARVVQAA  IGEA+EHEVRIH FL+  K+K+       E  D
Sbjct: 234  ITMHKLMGLLMTGGGNGSARVVQAACHIGEAIEHEVRIHKFLDNCKRKNALNRTSEEGPD 293

Query: 1832 PVIKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKVGCRLIQLLMETAYI 1653
            P  KE+ +LRKKV  L+KKQK+QQVR IV+ +DD KPWGQD QVKVGCRLIQ+L +TAYI
Sbjct: 294  PEAKEQDRLRKKVKILMKKQKVQQVRNIVRHQDDLKPWGQDAQVKVGCRLIQILTQTAYI 353

Query: 1652 QPPVDQLGDGPPDIRPAFVHTLKTVVKETHSRRYGVIECDPLVRKGLEKSARHMVIPYMP 1473
            QPPVDQ  DG PDIRPAFVHTLK V     SRRYGVIECDPLVRKG+EK+ARHMVIPYMP
Sbjct: 354  QPPVDQRDDGAPDIRPAFVHTLKCVETLKGSRRYGVIECDPLVRKGMEKTARHMVIPYMP 413

Query: 1472 MLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQLEPVFEALDTLGNAKWR 1293
            MLVPPLNW GY+RGAYLFLPSY+MRTHGAKQQREAVKRT +++LEP+F+AL+TLGN KWR
Sbjct: 414  MLVPPLNWTGYERGAYLFLPSYMMRTHGAKQQREAVKRTPKQELEPIFQALNTLGNTKWR 473

Query: 1292 INKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTEDEAEIRXXXXXXXXXXKENSERH 1113
            +NKR+LS++DRIW++GG+LADLVDRED+PLPEEPDTEDEAEI+          K NSERH
Sbjct: 474  VNKRILSVVDRIWANGGRLADLVDREDLPLPEEPDTEDEAEIKKWKWKVKAVKKVNSERH 533

Query: 1112 SQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRP 933
            SQRCDIELKLAVARK+KEEEGFYYPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRP
Sbjct: 534  SQRCDIELKLAVARKIKEEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRP 593

Query: 932  LGKSGLRWLKIHVANLYAGGVDKLSYEGRVAFTENHVEDIFDSADRPLEGRRWWLGAEDP 753
            LGKSGL+WLK+H+ANLY GGVDK SY+GR++FTENH+EDIFDSADRPLEG+RWWLGAEDP
Sbjct: 594  LGKSGLQWLKVHLANLYGGGVDKFSYDGRISFTENHMEDIFDSADRPLEGKRWWLGAEDP 653

Query: 752  FQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVTGEK 573
            FQCLA C++L+EALRS  PE+T+S++PVHQDGSCNGLQHYAALGRDKLGAAAVNLV G+K
Sbjct: 654  FQCLATCMSLTEALRSPYPESTVSYIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDK 713

Query: 572  PADVYSGIAARVLDIMRRDAEKDPAIEPDALRARFLIDQVDRKLVKQTVMTSVYGVTYIG 393
            PADVYSGIAARVLDIM+RDA KDPA +P+ +RAR LI+QVDRKLVKQTVMTSVYGVTYIG
Sbjct: 714  PADVYSGIAARVLDIMKRDAAKDPADDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIG 773

Query: 392  ARDQIKRRLKERCAITDDSELFAASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIASE 213
            ARDQIKRRLKER ++ DD+ELFA +CYAAKTTLTALGEMFEAARSIMSWLGDCAK+IA+E
Sbjct: 774  ARDQIKRRLKERASMEDDTELFACACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIATE 833

Query: 212  NQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVRRQRTAFPPNFVHSLD 33
            N PVRWTTPLGLPVVQPYRKLGRH+IKTSLQVLTLQRETDKVM +RQRTAFPPNFVHSLD
Sbjct: 834  NHPVRWTTPLGLPVVQPYRKLGRHMIKTSLQVLTLQRETDKVMAKRQRTAFPPNFVHSLD 893

Query: 32   GSHMMMTAVA 3
            GSHMMMTA+A
Sbjct: 894  GSHMMMTAIA 903


>sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName:
            Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 1B; Flags: Precursor
          Length = 1002

 Score = 1285 bits (3326), Expect = 0.0
 Identities = 631/794 (79%), Positives = 704/794 (88%), Gaps = 3/794 (0%)
 Frame = -2

Query: 2375 VDEIHELVAEVNKEDK-MKSNFKQHR-KLVDGMGQGKYNMLRRRQVKMETEAWEEAAKEY 2202
            +DEI EL+ E++KE++ +K+N +  + K + GMG GKYN LRRRQ+K+ETEAWEEAAKEY
Sbjct: 129  IDEIQELIEEMDKENEALKANLQPKQPKTIGGMGVGKYNFLRRRQIKVETEAWEEAAKEY 188

Query: 2201 QELLVDMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLPAD 2022
            QELL+DMCEQKLAPNLPYMKSLFLGW+EPLRDAIA EQ+LC +GKNR AYAP+F  LPA+
Sbjct: 189  QELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAE 248

Query: 2021 MMAVITXXXXXXXXXXXXXXGSARVVQAASQIGEALEHEVRIHSFLEKTKKKS-IAKDPK 1845
            MMAVIT              GSARVVQAAS IGEA+EHE RIH FLEKTKK + ++ D +
Sbjct: 249  MMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRFLEKTKKSNALSGDLE 308

Query: 1844 SESDPVIKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKVGCRLIQLLME 1665
                 ++KE  +LRKKV  L+KKQKL+QVR+IVK +DD KPWGQD  VKVGCRLIQ+LME
Sbjct: 309  ETPGDMMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILME 368

Query: 1664 TAYIQPPVDQLGDGPPDIRPAFVHTLKTVVKETHSRRYGVIECDPLVRKGLEKSARHMVI 1485
            TAYIQPP DQL DGPPDIRPAFVHTLKTV     SRRYGVI+CDPLVRKGL+K+ARHMVI
Sbjct: 369  TAYIQPPNDQLDDGPPDIRPAFVHTLKTVETMKGSRRYGVIQCDPLVRKGLDKTARHMVI 428

Query: 1484 PYMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQLEPVFEALDTLGN 1305
            PYMPMLVPP +W+GYD+G YLFLPSY+MRTHGAKQQREAVKR  +KQLEPVF+ALDTLGN
Sbjct: 429  PYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGN 488

Query: 1304 AKWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTEDEAEIRXXXXXXXXXXKEN 1125
             KWR+N++VL I+DRIW+SGG+LADLVDREDVPLPE PDTEDEAEIR          KEN
Sbjct: 489  TKWRVNRKVLGIVDRIWASGGRLADLVDREDVPLPEAPDTEDEAEIRKWKWKVKGVKKEN 548

Query: 1124 SERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFA 945
             ERHSQRCDIELKLAVARKMK+E+GFYYPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFA
Sbjct: 549  CERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFA 608

Query: 944  EGRPLGKSGLRWLKIHVANLYAGGVDKLSYEGRVAFTENHVEDIFDSADRPLEGRRWWLG 765
            EGRPLG SGLRWLKIH+AN+Y GGVDKLSYEGRVAF+ENH+EDIFDSA+RPLEG+RWWLG
Sbjct: 609  EGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHLEDIFDSAERPLEGKRWWLG 668

Query: 764  AEDPFQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLV 585
            AEDPFQCLA CIN++EALRS SPET IS+MP+HQDGSCNGLQHYAALGRDKLGAAAVNLV
Sbjct: 669  AEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDKLGAAAVNLV 728

Query: 584  TGEKPADVYSGIAARVLDIMRRDAEKDPAIEPDALRARFLIDQVDRKLVKQTVMTSVYGV 405
             G+KPADVYSGIAARVLDIM+RDA KDPA +P+ +RAR LI+QVDRKLVKQTVMTSVYGV
Sbjct: 729  AGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGV 788

Query: 404  TYIGARDQIKRRLKERCAITDDSELFAASCYAAKTTLTALGEMFEAARSIMSWLGDCAKV 225
            TYIGARDQIK+RLKER  I DD+ELFAA+CYAAKTTLTALGEMFEAARSIMSWLGDCAK+
Sbjct: 789  TYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKI 848

Query: 224  IASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVRRQRTAFPPNFV 45
            IA EN PVRWTTPLGLPVVQPYRKLGRHLIKTSLQ+LTLQRETDKVMV+RQRTAFPPNFV
Sbjct: 849  IAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFV 908

Query: 44   HSLDGSHMMMTAVA 3
            HSLDGSHMMMTA+A
Sbjct: 909  HSLDGSHMMMTAIA 922


>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
            [Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
            protein product [Vitis vinifera]
          Length = 1035

 Score = 1285 bits (3324), Expect = 0.0
 Identities = 660/921 (71%), Positives = 739/921 (80%), Gaps = 12/921 (1%)
 Frame = -2

Query: 2729 PLRMWRSIAKQAYXXXXXXXXXXXXXXXXXXS--IKISQDSVFSQRIRPVGY--STYVNY 2562
            P  MWR+IAK+A                      +  SQD +F + ++   +  S+  + 
Sbjct: 37   PTVMWRNIAKRAIPRAPRKCVYLDSQPLSRRYSFLGFSQDLIFPEIMKFGTFEPSSCSSS 96

Query: 2561 RYPLPGFNRIGGLSSQEDNSGRFSLAVSTNPFNISGFAHYSKGYXXXXXXXXXXXXXXDG 2382
             +   GF RIG +SS+ED  GR S     N    SGF    K Y              D 
Sbjct: 97   GFSEMGFRRIGEISSREDAVGRPSFGCLRNQMGFSGFC--PKSYASVAEAVSSTDVEEDV 154

Query: 2381 SGVDEIHELVAEVNKEDKMKSNFKQHRKLV--DGMGQGKYNMLRRRQVKMETEAWEEAAK 2208
            S  DEI EL+ E+ KE+K + NFK+  KL    GM QG+Y  LRRRQVK+ETEAWE AAK
Sbjct: 155  SASDEIQELLGEMKKEEKRQVNFKRREKLKMERGMEQGRYLRLRRRQVKIETEAWELAAK 214

Query: 2207 EYQELLVDMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLP 2028
            EY+ELL+DMCEQKLAPNLPYMKSLFLGW+EPLRDAI  EQELC+ GKN+ AYAPYF  LP
Sbjct: 215  EYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQLP 274

Query: 2027 ADMMAVITXXXXXXXXXXXXXXGSARVVQAASQIGEALEHEVRIHSFLEKTKKKSIAKDP 1848
            ADMM+VIT              GS RVVQAA  IG+A+E EVRIH+FLEKTK+K + KD 
Sbjct: 275  ADMMSVITMHKLVGLLMTGGEHGSTRVVQAACVIGDAIEQEVRIHNFLEKTKRKKVGKDK 334

Query: 1847 KSES---DPVIKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKVGCRLIQ 1677
              E    DPVI E+ KLRKKVT L+KKQKL   R+IVKG D+SKPWG + + KVG RLI+
Sbjct: 335  NVEGGGFDPVIHEQEKLRKKVTNLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLIE 394

Query: 1676 LLMETAYIQPPVD-QLGDGPPDIRPAFVHTLKTVVKETHS--RRYGVIECDPLVRKGLEK 1506
            LLM+TAYIQPPVD QL D PPDIRPAFVHT KTV++E     RR+GVIECDPLV+KGLE+
Sbjct: 395  LLMQTAYIQPPVDNQLADTPPDIRPAFVHTFKTVMREAKKIGRRFGVIECDPLVKKGLER 454

Query: 1505 SARHMVIPYMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQLEPVFE 1326
            +ARHMVIPY+PMLVPPL W GYD+GA+LFLPSYVMRTHGA+QQREAVKR  R QLEPVFE
Sbjct: 455  TARHMVIPYVPMLVPPLKWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPRNQLEPVFE 514

Query: 1325 ALDTLGNAKWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTEDEAEIRXXXXXX 1146
            AL+TLGN KWRINKR+  ++DRIW+ GG LADLVDR DVPLPE+PDTEDEA++R      
Sbjct: 515  ALNTLGNTKWRINKRLFDVVDRIWAGGGCLADLVDRNDVPLPEKPDTEDEAQLRKWKWKV 574

Query: 1145 XXXXKENSERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLC 966
                K NSERHSQRCDIELKLAVARKMK+E+GF+YPHNLDFRGRAYPMHP+LNHLGSDLC
Sbjct: 575  KSVKKANSERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLC 634

Query: 965  RGILEFAEGRPLGKSGLRWLKIHVANLYAGGVDKLSYEGRVAFTENHVEDIFDSADRPLE 786
            RGILEFAEGRPLG SGL WLKIH+ANL+AGGVDKLS+EGR+ FTENH++DIFDSADRPLE
Sbjct: 635  RGILEFAEGRPLGSSGLHWLKIHLANLFAGGVDKLSHEGRITFTENHLDDIFDSADRPLE 694

Query: 785  GRRWWLGAEDPFQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLG 606
            G+RWWL AEDPFQ LAACINLSEALRSSSPETTISH+PVHQDGSCNGLQHYAALGRD+LG
Sbjct: 695  GKRWWLNAEDPFQFLAACINLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDQLG 754

Query: 605  AAAVNLVTGEKPADVYSGIAARVLDIMRRDAEKDPAIEPDALRARFLIDQVDRKLVKQTV 426
            A AVNLV GEKPADVYSGIAARVLDIM+RDAEKDPAI PDALRAR LI+QVDRKLVKQTV
Sbjct: 755  ATAVNLVAGEKPADVYSGIAARVLDIMKRDAEKDPAIFPDALRARILINQVDRKLVKQTV 814

Query: 425  MTSVYGVTYIGARDQIKRRLKERCAITDDSELFAASCYAAKTTLTALGEMFEAARSIMSW 246
            MTSVYGVTYIGARDQIKRRLKER AI DD ELF A+CYAAK TLTALGEMF+AARSIMSW
Sbjct: 815  MTSVYGVTYIGARDQIKRRLKERNAIADDVELFGAACYAAKITLTALGEMFQAARSIMSW 874

Query: 245  LGDCAKVIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVRRQRT 66
            LGDCAK+IASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRET+ +MV+RQRT
Sbjct: 875  LGDCAKIIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETETIMVKRQRT 934

Query: 65   AFPPNFVHSLDGSHMMMTAVA 3
            AFPPNFVHSLDGSHMMMTA+A
Sbjct: 935  AFPPNFVHSLDGSHMMMTAIA 955


>dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
            sylvestris]
          Length = 1002

 Score = 1284 bits (3323), Expect = 0.0
 Identities = 632/793 (79%), Positives = 703/793 (88%), Gaps = 3/793 (0%)
 Frame = -2

Query: 2372 DEIHELVAEVNKEDK-MKSNFKQHR-KLVDGMGQGKYNMLRRRQVKMETEAWEEAAKEYQ 2199
            DEI EL+ E+NKE++ +K+N +  + K + GMG GKYN+LRRRQ+K+ETEAWEEAAKEYQ
Sbjct: 130  DEIQELIEEMNKENEALKTNLQPKQPKTIGGMGVGKYNLLRRRQIKVETEAWEEAAKEYQ 189

Query: 2198 ELLVDMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLPADM 2019
            ELL+DMCEQKLAPNLPYMKSLFLGW+EPLRDAIA EQ+LC +GKNR A AP+F  LPA+M
Sbjct: 190  ELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGACAPFFDQLPAEM 249

Query: 2018 MAVITXXXXXXXXXXXXXXGSARVVQAASQIGEALEHEVRIHSFLEKTKKKS-IAKDPKS 1842
            MAVIT              GSARVVQAAS IGEA+EHE RIH FLEKTKK + ++ D + 
Sbjct: 250  MAVITMHKLMGWLMTGGGTGSARVVQAASHIGEAIEHEARIHRFLEKTKKSNALSGDLED 309

Query: 1841 ESDPVIKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKVGCRLIQLLMET 1662
                ++KE  ++RKKV  L+KKQKLQQVR+IVK +DD KPWGQD  VKVGCRLIQ+LMET
Sbjct: 310  TPGDIMKERERVRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMET 369

Query: 1661 AYIQPPVDQLGDGPPDIRPAFVHTLKTVVKETHSRRYGVIECDPLVRKGLEKSARHMVIP 1482
            AYIQPP DQL D PPDIRPAFVHTLKTV     SRRYGVI+CDPLVRKGL+K+ARHMVIP
Sbjct: 370  AYIQPPNDQLDDCPPDIRPAFVHTLKTVETMKGSRRYGVIQCDPLVRKGLDKTARHMVIP 429

Query: 1481 YMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQLEPVFEALDTLGNA 1302
            YMPMLVPP +W+GYD+GAYLFLPSY+MRTHGAKQQREAVKR  +KQLEPVF+ALDTLGN 
Sbjct: 430  YMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNT 489

Query: 1301 KWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTEDEAEIRXXXXXXXXXXKENS 1122
            KWR+N++VL I+DRIW+SGG+LADLVDREDVPLPEEPD EDEA+IR          KEN 
Sbjct: 490  KWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAEDEAQIRKWKWKVKGVKKENC 549

Query: 1121 ERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAE 942
            ERHSQRCDIELKLAVARKMK+E+GFYYPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAE
Sbjct: 550  ERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAE 609

Query: 941  GRPLGKSGLRWLKIHVANLYAGGVDKLSYEGRVAFTENHVEDIFDSADRPLEGRRWWLGA 762
            GRPLGKSGLRWLKIH+AN+Y GGVDKLSYEGRVAF+ENHVEDIFDSA+RPLEG+RWWLGA
Sbjct: 610  GRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHVEDIFDSAERPLEGKRWWLGA 669

Query: 761  EDPFQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVT 582
            EDPFQCLA CIN++EALRS SPET IS+MP+HQDGSCNGLQHYAALGRD LGAAAVNLV 
Sbjct: 670  EDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDTLGAAAVNLVA 729

Query: 581  GEKPADVYSGIAARVLDIMRRDAEKDPAIEPDALRARFLIDQVDRKLVKQTVMTSVYGVT 402
            G+KPADVYSGIAARVLDIM+RDA KDPA +P+ +RAR LI+QVDRKLVKQTVMTSVYGVT
Sbjct: 730  GDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVT 789

Query: 401  YIGARDQIKRRLKERCAITDDSELFAASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVI 222
            YIGARDQIKRRLKER  I DD+ELFAA+CYAAKTTLTALGEMFEAARSIMSWLGDCAK+I
Sbjct: 790  YIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKII 849

Query: 221  ASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVRRQRTAFPPNFVH 42
            A EN PVRWTTPLGLPVVQPYRKLGRHLIKTSLQ+LTLQRETDKVMV+RQRTAFPPNFVH
Sbjct: 850  AMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVH 909

Query: 41   SLDGSHMMMTAVA 3
            SLDGSHMMMTA+A
Sbjct: 910  SLDGSHMMMTAIA 922


>emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
          Length = 1002

 Score = 1283 bits (3321), Expect = 0.0
 Identities = 630/794 (79%), Positives = 704/794 (88%), Gaps = 3/794 (0%)
 Frame = -2

Query: 2375 VDEIHELVAEVNKEDK-MKSNFKQHR-KLVDGMGQGKYNMLRRRQVKMETEAWEEAAKEY 2202
            +DEI EL+ E++KE++ +K+N +  + K + GMG GKYN LRRRQ+K+ETEAWEEAAKEY
Sbjct: 129  IDEIQELIEEMDKENEALKANLQPKQPKTIGGMGVGKYNFLRRRQIKVETEAWEEAAKEY 188

Query: 2201 QELLVDMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLPAD 2022
            QELL+DMCEQKLAPNLPYMKSLFLGW+EPLRDAIA EQ+LC +GKNR AYAP+F  LPA+
Sbjct: 189  QELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAE 248

Query: 2021 MMAVITXXXXXXXXXXXXXXGSARVVQAASQIGEALEHEVRIHSFLEKTKKKS-IAKDPK 1845
            MMAVIT              GSARVVQAAS IGEA+EHE RIH FLEKTKK + ++ D +
Sbjct: 249  MMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRFLEKTKKSNALSGDLE 308

Query: 1844 SESDPVIKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKVGCRLIQLLME 1665
                 ++KE  +LRKKV  L+KKQKL+QVR+IVK +DD KPWGQD  VKVGCRLIQ+LME
Sbjct: 309  ETPGDMMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILME 368

Query: 1664 TAYIQPPVDQLGDGPPDIRPAFVHTLKTVVKETHSRRYGVIECDPLVRKGLEKSARHMVI 1485
            TAYIQPP DQL DGPPDIRPAFVHTLKTV     SRRYGVI+CDPLVRKGL+K+ARHMVI
Sbjct: 369  TAYIQPPNDQLDDGPPDIRPAFVHTLKTVETMKGSRRYGVIQCDPLVRKGLDKTARHMVI 428

Query: 1484 PYMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQLEPVFEALDTLGN 1305
            PYMPMLVPP +W+GYD+G YLFLPSY+MRTHGAKQQREAVKR  +KQLEPVF+ALDTLGN
Sbjct: 429  PYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGN 488

Query: 1304 AKWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTEDEAEIRXXXXXXXXXXKEN 1125
             KWR+N++VL I++RIW+SGG+LADLVDREDVPLPE PDTEDEAEIR          KEN
Sbjct: 489  TKWRVNRKVLGIVNRIWASGGRLADLVDREDVPLPEAPDTEDEAEIRKWKWKVKGVKKEN 548

Query: 1124 SERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFA 945
             ERHSQRCDIELKLAVARKMK+E+GFYYPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFA
Sbjct: 549  CERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFA 608

Query: 944  EGRPLGKSGLRWLKIHVANLYAGGVDKLSYEGRVAFTENHVEDIFDSADRPLEGRRWWLG 765
            EGRPLG SGLRWLKIH+AN+Y GGVDKLSYEGRVAF+ENH+EDIFDSA+RPLEG+RWWLG
Sbjct: 609  EGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHLEDIFDSAERPLEGKRWWLG 668

Query: 764  AEDPFQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLV 585
            AEDPFQCLA CIN++EALRS SPET IS+MP+HQDGSCNGLQHYAALGRDKLGAAAVNLV
Sbjct: 669  AEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDKLGAAAVNLV 728

Query: 584  TGEKPADVYSGIAARVLDIMRRDAEKDPAIEPDALRARFLIDQVDRKLVKQTVMTSVYGV 405
             G+KPADVYSGIAARVLDIM+RDA KDPA +P+ +RAR LI+QVDRKLVKQTVMTSVYGV
Sbjct: 729  AGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGV 788

Query: 404  TYIGARDQIKRRLKERCAITDDSELFAASCYAAKTTLTALGEMFEAARSIMSWLGDCAKV 225
            TYIGARDQIK+RLKER  I DD+ELFAA+CYAAKTTLTALGEMFEAARSIMSWLGDCAK+
Sbjct: 789  TYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKI 848

Query: 224  IASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVRRQRTAFPPNFV 45
            IA EN PVRWTTPLGLPVVQPYRKLGRHLIKTSLQ+LTLQRETDKVMV+RQRTAFPPNFV
Sbjct: 849  IAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFV 908

Query: 44   HSLDGSHMMMTAVA 3
            HSLDGSHMMMTA+A
Sbjct: 909  HSLDGSHMMMTAIA 922


>ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor,
            putative [Ricinus communis] gi|223546175|gb|EEF47677.1|
            DNA-directed RNA polymerase 2, chloroplast/mitochondrial
            precursor, putative [Ricinus communis]
          Length = 997

 Score = 1277 bits (3305), Expect = 0.0
 Identities = 647/897 (72%), Positives = 734/897 (81%), Gaps = 21/897 (2%)
 Frame = -2

Query: 2630 KISQDSVFSQRIRPVGYSTYVNYRYPLPGFNRIGGLSSQEDNSGRFSLAVSTNPFNISGF 2451
            +++QD    Q++R     T +   Y   G  RI GLSSQ     + S    TNPF   GF
Sbjct: 24   QLNQDLDILQKVRHPEAQTLLCSPYSFLGSRRISGLSSQNHEFIKPSFTNLTNPF---GF 80

Query: 2450 AHYS-KGYXXXXXXXXXXXXXXDGSGVDEIHELVAEVNKEDK-MKSNFKQH------RKL 2295
            +H+  KGY              D SG DE+ E + E+NK  K M ++F+Q       +K 
Sbjct: 81   SHFLFKGYATAAAQVIASTDESDFSGCDELQEQIEEINKHHKKMDAHFRQQQQQQQRKKT 140

Query: 2294 VDGMGQGKYNMLRRRQVKMETEAWEEAAKEYQELLVDMCEQKLAPNLPYMKSLFLGWYEP 2115
            + GMG GKY +L++RQ+KMETEAWEEAA+EYQELL DMCEQKLAPNLPY+KSLFLGW+EP
Sbjct: 141  IAGMGIGKYTILKKRQIKMETEAWEEAAREYQELLTDMCEQKLAPNLPYIKSLFLGWFEP 200

Query: 2114 LRDAIATEQELCKQGKNRMAYAPYFILLPADMMAVITXXXXXXXXXXXXXXG-SARVVQA 1938
            LRDAIA EQEL ++  N++++ PYF  LPADMMAVIT                S RVVQA
Sbjct: 201  LRDAIAKEQELSREKNNKLSHGPYFDALPADMMAVITMHKLMGLLMTTNGGNGSVRVVQA 260

Query: 1937 ASQIGEALEHEVRIHSFLEKTKKKSIA---KDPKSESDPVI-------KEEGKLRKKVTT 1788
            A  +GEA+EHE RIH FLEKTKKK  +   ++P+ + +PV        KE+ KLRKKVT 
Sbjct: 261  ACAVGEAIEHEARIHRFLEKTKKKKKSTKNEEPEGKLEPVTSDAEKLAKEQEKLRKKVTE 320

Query: 1787 LIKKQKLQQVREIVKGRDDSKPWGQDTQVKVGCRLIQLLMETAYIQPPVDQLGDGPPDIR 1608
            L+KKQK+QQVR + KG DDS PWGQ+ QVKVGCRLIQLL+ETAYIQPPV+QLGDG PDIR
Sbjct: 321  LMKKQKVQQVRGLTKGHDDSMPWGQEAQVKVGCRLIQLLIETAYIQPPVNQLGDGLPDIR 380

Query: 1607 PAFVHTLKTVVKETH--SRRYGVIECDPLVRKGLEKSARHMVIPYMPMLVPPLNWIGYDR 1434
            PAF+HTLK V+K+T   SRRYGVIECDP+VR GLEKSARHMVIPYMPMLVPPLNW GYD+
Sbjct: 381  PAFMHTLKNVMKDTQKTSRRYGVIECDPIVRNGLEKSARHMVIPYMPMLVPPLNWEGYDQ 440

Query: 1433 GAYLFLPSYVMRTHGAKQQREAVKRTSRKQLEPVFEALDTLGNAKWRINKRVLSIIDRIW 1254
            GAYLFLPSYVMRTHGAKQQR AVKRT  KQLEPV+EAL+TLGN KWRINK++L+++DRIW
Sbjct: 441  GAYLFLPSYVMRTHGAKQQRNAVKRTPWKQLEPVYEALNTLGNTKWRINKKILTVVDRIW 500

Query: 1253 SSGGQLADLVDREDVPLPEEPDTEDEAEIRXXXXXXXXXXKENSERHSQRCDIELKLAVA 1074
            ++GG+LA L+DRED PLPEE +TEDE EI+          KENSERHSQRCDIELKLAVA
Sbjct: 501  ANGGRLAGLIDREDEPLPEELETEDENEIKKWKWKVKNVKKENSERHSQRCDIELKLAVA 560

Query: 1073 RKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHV 894
            RKMK+E+GFYYPHNLDFRGRAYPMHPHLNHLGSD+CRGILEFAEGRPLGKSG RWLKIH+
Sbjct: 561  RKMKDEDGFYYPHNLDFRGRAYPMHPHLNHLGSDMCRGILEFAEGRPLGKSGFRWLKIHL 620

Query: 893  ANLYAGGVDKLSYEGRVAFTENHVEDIFDSADRPLEGRRWWLGAEDPFQCLAACINLSEA 714
            AN+YAGGVDKLSYEGRVAFTENH++ IFDSADRPLEGRRWWLGAEDPFQCLA C NL+EA
Sbjct: 621  ANVYAGGVDKLSYEGRVAFTENHLDYIFDSADRPLEGRRWWLGAEDPFQCLATCFNLAEA 680

Query: 713  LRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVTGEKPADVYSGIAARVL 534
             RSSSPETTISHMP+HQDGSCNGLQHYAALGRDKLGAAAVNLV+GEKPADVYSGIAARVL
Sbjct: 681  FRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVSGEKPADVYSGIAARVL 740

Query: 533  DIMRRDAEKDPAIEPDALRARFLIDQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERC 354
            DIMR DAEKDP   P+AL A+ LI++VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 
Sbjct: 741  DIMRTDAEKDPGTNPNALHAKLLINEVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERD 800

Query: 353  AITDDSELFAASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIASENQPVRWTTPLGLP 174
            A+ DD  L+AASCYAAKTTL AL EMFE ARSIM+WLG+CAKVIASENQPV+WTTPLGLP
Sbjct: 801  AVADDPSLYAASCYAAKTTLMALEEMFEGARSIMAWLGECAKVIASENQPVQWTTPLGLP 860

Query: 173  VVQPYRKLGRHLIKTSLQVLTLQRETDKVMVRRQRTAFPPNFVHSLDGSHMMMTAVA 3
            VVQPYR+LGRHLIKTSLQ+L LQ+ETDK+MV+RQRTAFPPNFVHSLDGSHMMMTAVA
Sbjct: 861  VVQPYRQLGRHLIKTSLQMLALQKETDKIMVKRQRTAFPPNFVHSLDGSHMMMTAVA 917


>ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Populus trichocarpa]
            gi|550332836|gb|EEE88785.2| hypothetical protein
            POPTR_0008s11200g [Populus trichocarpa]
          Length = 988

 Score = 1271 bits (3288), Expect = 0.0
 Identities = 651/888 (73%), Positives = 728/888 (81%), Gaps = 15/888 (1%)
 Frame = -2

Query: 2621 QDSVFSQRIRPVGYSTYVNYRYPLPGFNRIGGLSSQEDNSGRFSLAVSTNPFNISGFAHY 2442
            +DS F + IR       +N  +      +IG +  Q D     S    T PF++S F  +
Sbjct: 25   KDSTFIENIRSPDAKKCLNSAFSFLCSRQIG-VFPQNDKLCNSSFGDLTKPFDLSPF--F 81

Query: 2441 SKGYXXXXXXXXXXXXXXDG-SGVDEIHELVAEVNKE-DKMKSNFK-QHRKLVDGMGQGK 2271
             KGY                 SG D+   L+ +VNK   KM+  F+ Q +K+V GMG GK
Sbjct: 82   FKGYATAAAADVIPSNDESDLSGSDDFQGLMEQVNKHFQKMEPQFRPQEKKMVAGMGIGK 141

Query: 2270 YNMLRRRQVKMETEAWEEAAKEYQELLVDMCEQKLAPNLPYMKSLFLGWYEPLRDAIATE 2091
            Y +L+RRQ+KMETEAWE+AA+EYQE+L DMCEQKLAPNLPY+KSLFLGW+EPLRDAI  E
Sbjct: 142  YAILKRRQIKMETEAWEQAAQEYQEMLEDMCEQKLAPNLPYVKSLFLGWFEPLRDAIVAE 201

Query: 2090 QELCKQGKNRMAYAPYFILLPADMMAVITXXXXXXXXXXXXXXG-SARVVQAASQIGEAL 1914
            QELCK+   R+++  +F  LPADMMAVIT                S RVVQAAS +GEA+
Sbjct: 202  QELCKRNL-RVSHRAHFSDLPADMMAVITMHKLMGLLMTGNGGSASIRVVQAASVVGEAI 260

Query: 1913 EHEVRIHSFLEKTKKKSI--AKDPKSESDPVI-------KEEGKLRKKVTTLIKKQKLQQ 1761
            EHE RIH FLEKTKK+    AK  + ESD  I       KE+ KLRKKVTTLIKKQK+QQ
Sbjct: 261  EHEGRIHKFLEKTKKRKNVEAKISEGESDAAIEEGEKLSKEQEKLRKKVTTLIKKQKVQQ 320

Query: 1760 VREIVKGRDDSKPWGQDTQVKVGCRLIQLLMETAYIQPPVDQLGDGPPDIRPAFVHTLKT 1581
            VR IVKG DDS+PWGQ+  VKVG RLIQL++ETAYIQPP+DQ+GDGPPDIRPAFVHTLKT
Sbjct: 321  VRRIVKGHDDSRPWGQEEHVKVGSRLIQLMIETAYIQPPIDQIGDGPPDIRPAFVHTLKT 380

Query: 1580 VVKETH--SRRYGVIECDPLVRKGLEKSARHMVIPYMPMLVPPLNWIGYDRGAYLFLPSY 1407
            + K+T   SRRYGVIECDPLVRKGLEKSARHMVIPYMPMLVPPLNW GYD+GA+LFLPSY
Sbjct: 381  ITKDTQKSSRRYGVIECDPLVRKGLEKSARHMVIPYMPMLVPPLNWTGYDQGAHLFLPSY 440

Query: 1406 VMRTHGAKQQREAVKRTSRKQLEPVFEALDTLGNAKWRINKRVLSIIDRIWSSGGQLADL 1227
            VMR HG+KQQR+AVKR SR QLEPVF+ALDTLGN KWRINKRVL ++DRIW+SGG LA L
Sbjct: 441  VMRIHGSKQQRDAVKRASRNQLEPVFKALDTLGNTKWRINKRVLVVVDRIWASGGHLAGL 500

Query: 1226 VDREDVPLPEEPDTEDEAEIRXXXXXXXXXXKENSERHSQRCDIELKLAVARKMKEEEGF 1047
            VDRED PLPEEP TEDEAEIR          KENSERHSQRCDIELKLAVARKMK+EEGF
Sbjct: 501  VDREDAPLPEEPQTEDEAEIRKWTWKVRSVKKENSERHSQRCDIELKLAVARKMKDEEGF 560

Query: 1046 YYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHVANLYAGGVD 867
            YYPHNLDFRGRAYPMHP+LNHLGSD+CRGILEFAEGRPLGKSGLRWLKIH+ANLYAGGVD
Sbjct: 561  YYPHNLDFRGRAYPMHPYLNHLGSDVCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVD 620

Query: 866  KLSYEGRVAFTENHVEDIFDSADRPLEGRRWWLGAEDPFQCLAACINLSEALRSSSPETT 687
            KLSY+GR++FTENH++DIFDSAD+PLEGRRWWLGAEDPFQCLAACINLSEALRS SPET 
Sbjct: 621  KLSYDGRISFTENHLDDIFDSADQPLEGRRWWLGAEDPFQCLAACINLSEALRSPSPETA 680

Query: 686  ISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVTGEKPADVYSGIAARVLDIMRRDAEK 507
             SH PVHQDGSCNGLQHYAALGRDKLGAAAVNLV GEKPADVYSGIA RVLDIM+RDAEK
Sbjct: 681  TSHTPVHQDGSCNGLQHYAALGRDKLGAAAVNLVGGEKPADVYSGIATRVLDIMQRDAEK 740

Query: 506  DPAIEPDALRARFLIDQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAITDDSELF 327
            DPAI P+++ A+ L++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERC I DD +L+
Sbjct: 741  DPAINPNSVHAKLLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCIIADDPQLY 800

Query: 326  AASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIASENQPVRWTTPLGLPVVQPYRKLG 147
            +A+CYAAKTTL AL EMFE AR IM+WLG+CAKVIASENQPVRWTTPLGLPVVQPYR+LG
Sbjct: 801  SAACYAAKTTLMALEEMFEGARGIMAWLGECAKVIASENQPVRWTTPLGLPVVQPYRQLG 860

Query: 146  RHLIKTSLQVLTLQRETDKVMVRRQRTAFPPNFVHSLDGSHMMMTAVA 3
            RHLIKTSLQVLTL+RETDKVMV+RQRTAFPPNFVHSLDGSHMMMTAVA
Sbjct: 861  RHLIKTSLQVLTLKRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVA 908


>ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
            gi|462411068|gb|EMJ16117.1| hypothetical protein
            PRUPE_ppa000719mg [Prunus persica]
          Length = 1024

 Score = 1259 bits (3258), Expect = 0.0
 Identities = 633/911 (69%), Positives = 724/911 (79%), Gaps = 5/911 (0%)
 Frame = -2

Query: 2720 MWRSIAKQAYXXXXXXXXXXXXXXXXXXSIKISQDSVFSQRIRPVGYSTYVNYRYPLPGF 2541
            +WR+ AKQA                    + I Q+SVF    +P   S+  + R+   GF
Sbjct: 36   VWRNFAKQAISRKQRFHINSQSFSRAYSLLGICQESVFPGNFKPFELSSCSSLRFSEVGF 95

Query: 2540 NRIGGLSSQEDNSGRFSLAVSTNPFNISGFAHYSKGYXXXXXXXXXXXXXXDGSGVDEIH 2361
               G +SS ED   + S     NP   +GF    KGY              + S VDE+ 
Sbjct: 96   RGKGAISSPEDCMCKPSFWSVRNPIWFNGFC--PKGYASVAEAVSSTDVEEEVSVVDEVQ 153

Query: 2360 ELVAEVNKEDKMKSNFKQHRKL--VDGMGQGKYNMLRRRQVKMETEAWEEAAKEYQELLV 2187
            EL+ +++ E+K ++ +KQ  +     GMGQGKY+ML+RRQ+K+ETEAWE AAKEY+EL++
Sbjct: 154  ELLQQMSIEEKREAQYKQRTRQNRARGMGQGKYHMLKRRQIKIETEAWERAAKEYRELMM 213

Query: 2186 DMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLPADMMAVI 2007
            DMCEQKLAPNLPYMKSLFLGW+EPLR+AI  EQ+LC++GKN+ AYAPY   LPADMM+VI
Sbjct: 214  DMCEQKLAPNLPYMKSLFLGWFEPLRNAIDKEQDLCRKGKNKTAYAPYIDQLPADMMSVI 273

Query: 2006 TXXXXXXXXXXXXXXGSARVVQAASQIGEALEHEVRIHSFLEKTKKKSIAKDPKS-ESDP 1830
            T              G+ RVV AA  IGEA+E EVRIH FLE T+KK + KD ++ ESD 
Sbjct: 274  TMHKLMGLLMTGGEHGTCRVVAAACTIGEAIEQEVRIHKFLEMTRKKKVDKDQENGESDA 333

Query: 1829 VIKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKVGCRLIQLLMETAYIQ 1650
              KE  KL KKVT L+KKQKL+ VR IV   D SK W  + + KVG RLI+LL +TA+IQ
Sbjct: 334  AKKEREKLNKKVTNLMKKQKLKAVRGIVSKHDASKSWSLEARAKVGSRLIELLTQTAFIQ 393

Query: 1649 PPVDQLGDGPPDIRPAFVHTLKTVVKETH--SRRYGVIECDPLVRKGLEKSARHMVIPYM 1476
            PP DQL DGPPDIRPAFVHT +TV K+    SRRYGVIECDPLV KGLEK+ARHMVIPYM
Sbjct: 394  PPADQLADGPPDIRPAFVHTFRTVAKDAKNASRRYGVIECDPLVLKGLEKTARHMVIPYM 453

Query: 1475 PMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQLEPVFEALDTLGNAKW 1296
            PMLVPPLNW GYD+G Y FLPSYVMR HGA+QQREA+KRT R+QLEPVF+ALD LGN +W
Sbjct: 454  PMLVPPLNWTGYDKGGYFFLPSYVMRIHGARQQREAIKRTPREQLEPVFKALDALGNTRW 513

Query: 1295 RINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTEDEAEIRXXXXXXXXXXKENSER 1116
            R+NKRVLS++DRIW+SGG LADLVDR DVPLPEEPDTEDE  ++          KEN ER
Sbjct: 514  RVNKRVLSVVDRIWASGGHLADLVDRNDVPLPEEPDTEDETLLKKWKWKVKSVKKENMER 573

Query: 1115 HSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGR 936
            HSQRCD ELKLAVARKMK+EEGFYYPHNLDFRGRAYPMHP+LNHLGSD+CRGILEF EGR
Sbjct: 574  HSQRCDTELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDVCRGILEFQEGR 633

Query: 935  PLGKSGLRWLKIHVANLYAGGVDKLSYEGRVAFTENHVEDIFDSADRPLEGRRWWLGAED 756
            PLGKSGL WLKIH+ANLYAGGVDKLS EGR+AFTENH++DIFDS D+PLEGRRWWL AED
Sbjct: 634  PLGKSGLSWLKIHLANLYAGGVDKLSLEGRIAFTENHLDDIFDSVDKPLEGRRWWLKAED 693

Query: 755  PFQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVTGE 576
            PFQCLA CINL+EALRSSSPET ISH+PVHQDGSCNGLQHYAALGRDKLGAA+VNLVTGE
Sbjct: 694  PFQCLAVCINLAEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDKLGAASVNLVTGE 753

Query: 575  KPADVYSGIAARVLDIMRRDAEKDPAIEPDALRARFLIDQVDRKLVKQTVMTSVYGVTYI 396
            KPADVYSGIA RVL+IMRRDA+KDP + P+ALRA+ LI+QVDRKLVKQTVMTSVYGVTYI
Sbjct: 754  KPADVYSGIAVRVLEIMRRDAQKDPVVFPEALRAKLLINQVDRKLVKQTVMTSVYGVTYI 813

Query: 395  GARDQIKRRLKERCAITDDSELFAASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIAS 216
            GARDQIKRRLKER +I+DD+E+F  +CYAAK TLTALGEMFEAAR IMSWLG+CAK+IAS
Sbjct: 814  GARDQIKRRLKERGSISDDAEIFGCACYAAKITLTALGEMFEAARGIMSWLGECAKIIAS 873

Query: 215  ENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVRRQRTAFPPNFVHSL 36
            ENQPVRWTTPLGLPVVQPYRK GRHLIKTSLQVLTLQRET+KVMV+RQRTAFPPNFVHSL
Sbjct: 874  ENQPVRWTTPLGLPVVQPYRKFGRHLIKTSLQVLTLQRETEKVMVKRQRTAFPPNFVHSL 933

Query: 35   DGSHMMMTAVA 3
            D SHMMMTA+A
Sbjct: 934  DSSHMMMTAIA 944


>emb|CBI27412.3| unnamed protein product [Vitis vinifera]
          Length = 810

 Score = 1254 bits (3246), Expect = 0.0
 Identities = 622/730 (85%), Positives = 662/730 (90%), Gaps = 3/730 (0%)
 Frame = -2

Query: 2183 MCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLPADMMAVIT 2004
            MCEQKLAPNLPY+KSLFLGW+EPLRD IA EQ+LCKQGKNR AYAPYF  LPADMMAVIT
Sbjct: 1    MCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVIT 60

Query: 2003 XXXXXXXXXXXXXXGSARVVQAASQIGEALEHEVRIHSFLEKTKKKSIAKD-PKSESDPV 1827
                          GSARVVQAA  IGEA+EHEVRI  F+EKTKKKS + + P   S+PV
Sbjct: 61   MHKLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPV 120

Query: 1826 IKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKVGCRLIQLLMETAYIQP 1647
             KE+ KLRKKV+ L+KKQKLQQVR+IVK +DDSKPWGQD  VKVG RLI+LL+ETAYIQP
Sbjct: 121  TKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQP 180

Query: 1646 PVDQLGDGPPDIRPAFVHTLKTVVKETH--SRRYGVIECDPLVRKGLEKSARHMVIPYMP 1473
            P DQLGDGPPDIRPAFVHTLKTV+KET   +RRYGVIECDPLVRKGLEK+ARHMVIPYMP
Sbjct: 181  PADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMP 240

Query: 1472 MLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQLEPVFEALDTLGNAKWR 1293
            MLVPPLNW GYD+GAYLFLPSYVMR HGA+QQREA+KR  RK LEP FEAL+TLGN KWR
Sbjct: 241  MLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKWR 300

Query: 1292 INKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTEDEAEIRXXXXXXXXXXKENSERH 1113
            INKRVL +IDRIW+SGG+LADLVDREDVPLPEEPDTEDEAEIR          KENSERH
Sbjct: 301  INKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSERH 360

Query: 1112 SQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRP 933
            SQRCDIELKLAVARKMK+E+GF+YPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRP
Sbjct: 361  SQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRP 420

Query: 932  LGKSGLRWLKIHVANLYAGGVDKLSYEGRVAFTENHVEDIFDSADRPLEGRRWWLGAEDP 753
            LGKSGLRWLKIH+AN+YAGGVDKLSYEGRVAFTENH+EDIFDSADRPLEGRRWWL AEDP
Sbjct: 421  LGKSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSAEDP 480

Query: 752  FQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVTGEK 573
            FQCLA CINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLV GEK
Sbjct: 481  FQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEK 540

Query: 572  PADVYSGIAARVLDIMRRDAEKDPAIEPDALRARFLIDQVDRKLVKQTVMTSVYGVTYIG 393
            PADVYSGIAARVLDIM+RDA+KDPA EP+ALRAR LI QVDRKLVKQTVMTSVYGVTYIG
Sbjct: 541  PADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTSVYGVTYIG 600

Query: 392  ARDQIKRRLKERCAITDDSELFAASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIASE 213
            ARDQIKRRLKERCAI D+ E+F+ASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIASE
Sbjct: 601  ARDQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIASE 660

Query: 212  NQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVRRQRTAFPPNFVHSLD 33
            N PVRW TPLGLPVVQPYRKLGRHLIKTSLQVL+LQRETDKVMV+RQRTAFPPNFVHSLD
Sbjct: 661  NHPVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAFPPNFVHSLD 720

Query: 32   GSHMMMTAVA 3
            GSHMMMTAVA
Sbjct: 721  GSHMMMTAVA 730


>ref|XP_006484275.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like [Citrus
            sinensis]
          Length = 980

 Score = 1245 bits (3222), Expect = 0.0
 Identities = 639/920 (69%), Positives = 722/920 (78%), Gaps = 14/920 (1%)
 Frame = -2

Query: 2720 MWRSIAKQAYXXXXXXXXXXXXXXXXXXSIKISQDSVFSQRIRPVGYSTYVNYRYPLPGF 2541
            MWR++A+Q+                     K+SQ + F ++I  +   T ++   PL GF
Sbjct: 1    MWRNLARQSSTRNFKFSPS-----------KVSQTTNFLKKITSLETQTLLDSSCPLLGF 49

Query: 2540 NRIGGLSSQEDNSGRFSLAVSTNPFNISGFAHYSKGYXXXXXXXXXXXXXXDGSGVDEIH 2361
             R   LSSQ+ N G+ +   S  PF +     Y+                   SG +E+ 
Sbjct: 50   RRTSFLSSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIASESEL-------SGSEEVQ 102

Query: 2360 ELVAEVNKE-----DKMKSNFKQHRKLVDGMGQGKYNMLRRRQVKMETEAWEEAAKEYQE 2196
            EL+ + N++     D      KQ +K   GMG  KY ML+RRQ+K+ETEAWE+AAKEYQ+
Sbjct: 103  ELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQD 162

Query: 2195 LLVDMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLPADMM 2016
            LL DMCEQKLAPNLPY+KSLFLGW+EPLRDAIA +Q   +     M YAPYF  LPADMM
Sbjct: 163  LLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMM 222

Query: 2015 AVITXXXXXXXXXXXXXXGSARVVQAASQIGEALEHEVRIHSFLEKTKKKSIAKDP-KSE 1839
            AVIT                 RVVQAA QIGEA+E+E RI SF E TKKK+   +  + +
Sbjct: 223  AVITMHKLVGLLMTNAG--EVRVVQAACQIGEAIENEARIRSFFESTKKKNATDNNLEGD 280

Query: 1838 SDPV-------IKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKVGCRLI 1680
            S+PV       IKE+ KL+K+VT+LIKKQKL+QVR IVKG  D KPWGQD  VKVGCRLI
Sbjct: 281  SEPVTNDPEKLIKEQDKLKKRVTSLIKKQKLRQVRGIVKGHVDLKPWGQDALVKVGCRLI 340

Query: 1679 QLLMETAYIQPPVDQLGDGPPDIRPAFVHTLKTVVKET-HSRRYGVIECDPLVRKGLEKS 1503
            QLLMETAYIQPPVDQLGD PPDIRPAFVHTLK+  KE    RRYGVIECDPLVRKGLEK+
Sbjct: 341  QLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKT 400

Query: 1502 ARHMVIPYMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQLEPVFEA 1323
             RHM+IPYMPMLVPPLNW GY+RG + FLPSYVMRTHGA+QQRE +K T R QLEPVF+A
Sbjct: 401  GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQA 460

Query: 1322 LDTLGNAKWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTEDEAEIRXXXXXXX 1143
            LDTLG+ KWR+NKR+L +IDR+W+SGG LA LVD+EDVPLPE+PDT+DE EI+       
Sbjct: 461  LDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPDTDDETEIKKWKWKVK 520

Query: 1142 XXXKENSERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCR 963
               K+NSE+HSQRCDIELKL+VARKMK+EEGFYYPHNLDFRGRAYPMHP+LNHLGSDLCR
Sbjct: 521  TAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 580

Query: 962  GILEFAEGRPLGKSGLRWLKIHVANLYAGGVDKLSYEGRVAFTENHVEDIFDSADRPLEG 783
            GILEF EG PLGKSGL WLKIH+ANLYAGGVDKLSYEGRVAFTENH++DIFDSADRPLEG
Sbjct: 581  GILEFEEGCPLGKSGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEG 640

Query: 782  RRWWLGAEDPFQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGA 603
            RRWWLGAEDPFQCLA CINLSEALRS SPE+TISH+PVH DGSCNGLQHYAALGRDKLGA
Sbjct: 641  RRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGA 700

Query: 602  AAVNLVTGEKPADVYSGIAARVLDIMRRDAEKDPAIEPDALRARFLIDQVDRKLVKQTVM 423
            AAVNLV G+KPADVYSGIAARVL+IMR DA+KDPA  P A  AR LI+QVDRKLVKQTVM
Sbjct: 701  AAVNLVGGDKPADVYSGIAARVLEIMRADADKDPATYPYASCARLLINQVDRKLVKQTVM 760

Query: 422  TSVYGVTYIGARDQIKRRLKERCAITDDSELFAASCYAAKTTLTALGEMFEAARSIMSWL 243
            TSVYGVTYIGARDQIK+RLKERCAI DDS+LF A+CYAAKTTLTALGEMFEAARSIMSWL
Sbjct: 761  TSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARSIMSWL 820

Query: 242  GDCAKVIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVRRQRTA 63
            G+CAKVIASENQ VRWTTPLGLPVVQPY +LGRHLI+TSLQ L LQRETDKVMV+RQRTA
Sbjct: 821  GECAKVIASENQAVRWTTPLGLPVVQPYHQLGRHLIRTSLQTLALQRETDKVMVKRQRTA 880

Query: 62   FPPNFVHSLDGSHMMMTAVA 3
            FPPNFVHSLDGSHMMMTAVA
Sbjct: 881  FPPNFVHSLDGSHMMMTAVA 900


>ref|XP_006437832.1| hypothetical protein CICLE_v10030633mg [Citrus clementina]
            gi|557540028|gb|ESR51072.1| hypothetical protein
            CICLE_v10030633mg [Citrus clementina]
          Length = 980

 Score = 1245 bits (3221), Expect = 0.0
 Identities = 639/920 (69%), Positives = 722/920 (78%), Gaps = 14/920 (1%)
 Frame = -2

Query: 2720 MWRSIAKQAYXXXXXXXXXXXXXXXXXXSIKISQDSVFSQRIRPVGYSTYVNYRYPLPGF 2541
            MWR++A+Q+                     K+SQ + F ++I  +   T ++   PL GF
Sbjct: 1    MWRNLARQSSTRNFKFSPS-----------KVSQTTNFLKKITSLETQTLLDSSCPLLGF 49

Query: 2540 NRIGGLSSQEDNSGRFSLAVSTNPFNISGFAHYSKGYXXXXXXXXXXXXXXDGSGVDEIH 2361
             R   LSSQ+ N G+ +   S  PF +     Y+                   SG +E+ 
Sbjct: 50   RRTSFLSSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIASESEL-------SGSEEVQ 102

Query: 2360 ELVAEVNKE-----DKMKSNFKQHRKLVDGMGQGKYNMLRRRQVKMETEAWEEAAKEYQE 2196
            EL+ + N++     D      KQ +K   GMG  KY ML+RRQ+K+ETEAWE+AAKEYQ+
Sbjct: 103  ELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQD 162

Query: 2195 LLVDMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLPADMM 2016
            LL DMCEQKLAPNLPY+KSLFLGW+EPLRDAIA +Q   +     M YAPYF  LPADMM
Sbjct: 163  LLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMM 222

Query: 2015 AVITXXXXXXXXXXXXXXGSARVVQAASQIGEALEHEVRIHSFLEKTKKKSIAKDP-KSE 1839
            AVIT                 RVVQAA QIGEA+E+E RI SF E TKKK+   +  + +
Sbjct: 223  AVITMHKLVGLLMTNAG--EVRVVQAACQIGEAIENEARIRSFFESTKKKNATDNNLEGD 280

Query: 1838 SDPV-------IKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKVGCRLI 1680
            S+PV       IKE+ KL+K+VT+LIKKQKL+QVR IVKG  D KPWGQD  VKVGCRLI
Sbjct: 281  SEPVTNDPEKLIKEQEKLKKRVTSLIKKQKLRQVRGIVKGHVDLKPWGQDALVKVGCRLI 340

Query: 1679 QLLMETAYIQPPVDQLGDGPPDIRPAFVHTLKTVVKET-HSRRYGVIECDPLVRKGLEKS 1503
            QLLMETAYIQPPVDQLGD PPDIRPAFVHTLK+  KE    RRYGVIECDPLVRKGLEK+
Sbjct: 341  QLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKT 400

Query: 1502 ARHMVIPYMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQLEPVFEA 1323
             RHM+IPYMPMLVPPLNW GY+RG + FLPSYVMRTHGA+QQRE +K T R QLEPVF+A
Sbjct: 401  GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQA 460

Query: 1322 LDTLGNAKWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTEDEAEIRXXXXXXX 1143
            LDTLG+ KWR+NKR+L +IDR+W+SGG LA LVD+EDVPLPE+PDT+DE EI+       
Sbjct: 461  LDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPDTDDETEIKKWKWKVK 520

Query: 1142 XXXKENSERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCR 963
               K+NSE+HSQRCDIELKL+VARKMK+EEGFYYPHNLDFRGRAYPMHP+LNHLGSDLCR
Sbjct: 521  TAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 580

Query: 962  GILEFAEGRPLGKSGLRWLKIHVANLYAGGVDKLSYEGRVAFTENHVEDIFDSADRPLEG 783
            GILEF EG PLGKSGL WLKIH+ANLYAGGVDKLSYEGRVAFTENH++DIFDSADRPLEG
Sbjct: 581  GILEFEEGCPLGKSGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEG 640

Query: 782  RRWWLGAEDPFQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGA 603
            RRWWLGAEDPFQCLA CINLSEALRS SPE+TISH+PVH DGSCNGLQHYAALGRDKLGA
Sbjct: 641  RRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGA 700

Query: 602  AAVNLVTGEKPADVYSGIAARVLDIMRRDAEKDPAIEPDALRARFLIDQVDRKLVKQTVM 423
            AAVNLV G+KPADVYSGIAARVL+IMR DA+KDPA  P A  AR LI+QVDRKLVKQTVM
Sbjct: 701  AAVNLVGGDKPADVYSGIAARVLEIMRADADKDPATYPYASCARLLINQVDRKLVKQTVM 760

Query: 422  TSVYGVTYIGARDQIKRRLKERCAITDDSELFAASCYAAKTTLTALGEMFEAARSIMSWL 243
            TSVYGVTYIGARDQIK+RLKERCAI DDS+LF A+CYAAKTTLTALGEMFEAARSIMSWL
Sbjct: 761  TSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARSIMSWL 820

Query: 242  GDCAKVIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVRRQRTA 63
            G+CAKVIASENQ VRWTTPLGLPVVQPY +LGRHLI+TSLQ L LQRETDKVMV+RQRTA
Sbjct: 821  GECAKVIASENQAVRWTTPLGLPVVQPYHQLGRHLIRTSLQTLALQRETDKVMVKRQRTA 880

Query: 62   FPPNFVHSLDGSHMMMTAVA 3
            FPPNFVHSLDGSHMMMTAVA
Sbjct: 881  FPPNFVHSLDGSHMMMTAVA 900


>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
            AltName: Full=T7 bacteriophage-type single subunit RNA
            polymerase 2; Flags: Precursor
            gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
            [Nicotiana sylvestris]
          Length = 1020

 Score = 1243 bits (3217), Expect = 0.0
 Identities = 609/798 (76%), Positives = 694/798 (86%), Gaps = 5/798 (0%)
 Frame = -2

Query: 2381 SGVDEIHELVAEVNKEDKMKSNFKQH--RKLVDGMGQGKYNMLRRRQVKMETEAWEEAAK 2208
            S VDE+HEL+ E+ KE+K +  F++   R L  GMG  KY  L+RRQVK+ETEAWE+AAK
Sbjct: 143  SVVDEVHELLTELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAK 202

Query: 2207 EYQELLVDMCEQKLAPNLPYMKSLFLGWYEPLRDAIATEQELCKQGKNRMAYAPYFILLP 2028
            EY+ELL DMCEQKLAPNLPY+KSLFLGW+EPLRD IA EQELC QGK++ AYA YF  LP
Sbjct: 203  EYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLP 262

Query: 2027 ADMMAVITXXXXXXXXXXXXXXGSARVVQAASQIGEALEHEVRIHSFLEKTKKKSIAKDP 1848
            ADMMAVIT              G+ARVVQAA  IG+A+E EVRIH+FLEKTKK+   KD 
Sbjct: 263  ADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDK 322

Query: 1847 -KSESDPVIKEEGKLRKKVTTLIKKQKLQQVREIVKGRDDSKPWGQDTQVKVGCRLIQLL 1671
             K + + V +E+ KLRKKVT L+KKQKL+ V +IV+ +DDSKPWGQD + KVG RLI LL
Sbjct: 323  QKEDGEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLL 382

Query: 1670 METAYIQPPVDQLGDGPPDIRPAFVHTLKTVVKETHS--RRYGVIECDPLVRKGLEKSAR 1497
            ++TAYIQPP +QL   PPDIRPAFVH+++TV KET S  RRYG+I+CD LV KGLE++AR
Sbjct: 383  LQTAYIQPPANQLAVDPPDIRPAFVHSVRTVAKETKSASRRYGIIQCDELVFKGLERTAR 442

Query: 1496 HMVIPYMPMLVPPLNWIGYDRGAYLFLPSYVMRTHGAKQQREAVKRTSRKQLEPVFEALD 1317
            HMVIPYMPMLVPP+ W GYD+G +L+LPSYVMRTHGA+QQREAVKR SR QL+PVFEALD
Sbjct: 443  HMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALD 502

Query: 1316 TLGNAKWRINKRVLSIIDRIWSSGGQLADLVDREDVPLPEEPDTEDEAEIRXXXXXXXXX 1137
            TLGN KWRINKRVLS++DRIW+ GG+LADLVDR+D PLPEEPDTEDEA            
Sbjct: 503  TLGNTKWRINKRVLSVVDRIWAGGGRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSV 562

Query: 1136 XKENSERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGI 957
             KEN ERHSQRCDIELKLAVARKMK+EE F+YPHN+DFRGRAYPMHPHLNHLGSD+CRG+
Sbjct: 563  KKENRERHSQRCDIELKLAVARKMKDEESFFYPHNVDFRGRAYPMHPHLNHLGSDICRGV 622

Query: 956  LEFAEGRPLGKSGLRWLKIHVANLYAGGVDKLSYEGRVAFTENHVEDIFDSADRPLEGRR 777
            LEFAEGRPLG+SGLRWLKIH+ANL+AGGV+KLS EGR+ FTENH++DIFDS+D+PLEGRR
Sbjct: 623  LEFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLEGRIGFTENHMDDIFDSSDKPLEGRR 682

Query: 776  WWLGAEDPFQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAA 597
            WWL AEDPFQCLA CINLSEA+RSSSPET++SH+PVHQDGSCNGLQHYAALGRDKLGAAA
Sbjct: 683  WWLNAEDPFQCLAVCINLSEAVRSSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAA 742

Query: 596  VNLVTGEKPADVYSGIAARVLDIMRRDAEKDPAIEPDALRARFLIDQVDRKLVKQTVMTS 417
            VNLV GEKPADVYSGIAARVLDIM+RDA++DPA  PDA+RAR L++QVDRKLVKQTVMTS
Sbjct: 743  VNLVAGEKPADVYSGIAARVLDIMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTS 802

Query: 416  VYGVTYIGARDQIKRRLKERCAITDDSELFAASCYAAKTTLTALGEMFEAARSIMSWLGD 237
            VYGVTYIGARDQIKRRLKER AI DDSELF A+CYAAK TLTALGEMFEAARSIM+WLG+
Sbjct: 803  VYGVTYIGARDQIKRRLKERGAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGE 862

Query: 236  CAKVIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVRRQRTAFP 57
            CAK+IASEN+PVRWTTPLGLPVVQPYRK+GRHLIKTSLQ+LTLQRET+KVMV+RQRTAFP
Sbjct: 863  CAKIIASENEPVRWTTPLGLPVVQPYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFP 922

Query: 56   PNFVHSLDGSHMMMTAVA 3
            PNF+HSLDGSHMMMTAVA
Sbjct: 923  PNFIHSLDGSHMMMTAVA 940