BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia22_contig00012243
         (968 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004293076.1| PREDICTED: putative ribonuclease H protein A...    90   1e-15
ref|XP_007221701.1| hypothetical protein PRUPE_ppb013507mg [Prun...    87   1e-14
ref|XP_007207609.1| hypothetical protein PRUPE_ppa018907mg, part...    86   3e-14
ref|XP_004306275.1| PREDICTED: putative ribonuclease H protein A...    85   4e-14
ref|XP_004305978.1| PREDICTED: uncharacterized protein LOC101292...    85   4e-14
ref|XP_006285450.1| hypothetical protein CARUB_v10006875mg, part...    79   2e-12
ref|XP_004308642.1| PREDICTED: putative ribonuclease H protein A...    78   5e-12
ref|XP_004293049.1| PREDICTED: putative ribonuclease H protein A...    78   6e-12
ref|XP_004308776.1| PREDICTED: putative ribonuclease H protein A...    76   2e-11
ref|XP_004301358.1| PREDICTED: putative ribonuclease H protein A...    76   2e-11
ref|XP_004288816.1| PREDICTED: uncharacterized protein LOC101301...    75   3e-11
ref|XP_004292563.1| PREDICTED: putative ribonuclease H protein A...    75   4e-11
ref|XP_004298270.1| PREDICTED: putative ribonuclease H protein A...    74   7e-11
ref|XP_002865522.1| hypothetical protein ARALYDRAFT_917523 [Arab...    74   1e-10
ref|XP_007212486.1| hypothetical protein PRUPE_ppa019229mg, part...    73   2e-10
ref|XP_004305406.1| PREDICTED: putative ribonuclease H protein A...    73   2e-10
ref|XP_007204004.1| hypothetical protein PRUPE_ppa025711mg, part...    73   2e-10
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...    73   2e-10
ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis ...    72   3e-10
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...    72   3e-10

>ref|XP_004293076.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 487

 Score = 90.1 bits (222), Expect = 1e-15
 Identities = 75/297 (25%), Positives = 125/297 (42%), Gaps = 20/297 (6%)
 Frame = +1

Query: 124 KVWNLQC--RMEIFAWTLLHNRLSTCEKL*MKNIIPDPW*KLCGNTAESEEYLLFDCSKV 297
           KVW L    ++++F W LL  RL T ++L     I D    LC +  E+ ++L   C   
Sbjct: 164 KVWKLDVPLKVKLFGWLLLRGRLKTRDRLSKFGYIDDNSCPLCDSDNETADHLFGHCD-- 221

Query: 298 KKFWPYA*YFLTNVNNQSNMR-FTDW-------VMKCFDNSTGRGMDISTLSKLVYLLWT 453
                    F T V   + +    DW       + + F N      D    +K++ + W 
Sbjct: 222 ---------FTTEVFRLAGISALMDWHEGYLKVLREMFINQP---YDKFLFAKVLIIYWQ 269

Query: 454 IWKTRNNSVFNHLPPNPYAIWRTTFIHYSSYMSLSSPINLSSTATLGNSRARNSCRWIHP 633
           IWK RN+++F  +      +  T   H++      + +    + T  ++      RW+ P
Sbjct: 270 IWKARNDTIFRDVITTATNVAATAAFHFNETALYKAVVGGGISQTTSST-----IRWLPP 324

Query: 634 DGKDVKLNFDGS---KDAAG-------NARVVLFYVHGIQV*LINFFGQCSVPQAEYVAC 783
               +K+NFDGS   + AAG       +  V+L    G+        G  ++P AE  A 
Sbjct: 325 HNNFIKINFDGSVQGRSAAGGFVFRNSDGNVILAAAKGL--------GSTTIPTAEATAL 376

Query: 784 RDGIMMTIRLGLDRIIVEGDSQIVIQNLRSHRNIAWSLQMVHRDIS*LMQKFRHIQF 954
           RD ++     G   + VEGDS++VI  +    +  W LQ + +DI  +   F  + F
Sbjct: 377 RDSLVKARDRGYMNVQVEGDSKLVIDAINGKLSPPWRLQKIVQDIRTIATSFSSVCF 433


>ref|XP_007221701.1| hypothetical protein PRUPE_ppb013507mg [Prunus persica]
           gi|462418637|gb|EMJ22900.1| hypothetical protein
           PRUPE_ppb013507mg [Prunus persica]
          Length = 363

 Score = 86.7 bits (213), Expect = 1e-14
 Identities = 66/241 (27%), Positives = 109/241 (45%), Gaps = 2/241 (0%)
 Frame = +1

Query: 238 KLCGNTAESEEYLLFDCSKVKKFWPYA*YFLTNVNNQSNMRFTDWVMKCFDNSTGRGMDI 417
           KL  N  E+  +L F+C      +    YF  N  +Q N    +W+          G ++
Sbjct: 61  KLSQNHMETINHLFFECQFAVNIYRCT-YFFPNYAHQ-NCDGIEWLASLPHTKVADGSNV 118

Query: 418 STLSKLVYLLWTIWKTRNNSVFNHLPPNPYAIWRTTFIHYSSYMSLSSPINLSSTATLGN 597
             LSK + L W IW+ RNN +F  +  +P  +          Y   +S +   ST  +  
Sbjct: 119 --LSKALLLCWQIWEARNNCIFKDIDLHPVRVLNVAGHIGLDYWKTNSCLPQKSTGKV-- 174

Query: 598 SRARNSCRWIHPDGKDVKLNFDGSK--DAAGNARVVLFYVHGIQV*LINFFGQCSVPQAE 771
                + +W  P    VK+NFDGS   + A    V+  +   +++      GQ S+  AE
Sbjct: 175 -----NIKWEPPPLDWVKVNFDGSVRGNLAATGFVIRDWNGNVRLAGTKNSGQVSITVAE 229

Query: 772 YVACRDGIMMTIRLGLDRIIVEGDSQIVIQNLRSHRNIAWSLQMVHRDIS*LMQKFRHIQ 951
            +A RDG+   I  G  +I+VEGDS+++I  + +  ++ WS+ ++ +DI  L      I 
Sbjct: 230 CLALRDGLAHAIHKGWQKILVEGDSKLIIDCINNLISVPWSISLLVQDIWLLSSYCEEIS 289

Query: 952 F 954
           F
Sbjct: 290 F 290


>ref|XP_007207609.1| hypothetical protein PRUPE_ppa018907mg, partial [Prunus persica]
            gi|462403251|gb|EMJ08808.1| hypothetical protein
            PRUPE_ppa018907mg, partial [Prunus persica]
          Length = 1566

 Score = 85.5 bits (210), Expect = 3e-14
 Identities = 66/245 (26%), Positives = 104/245 (42%), Gaps = 2/245 (0%)
 Frame = +1

Query: 226  DPW*KLCGNTAESEEYLLFDCSKVKKFWPYA*YFLTNVNNQSNMRFTDWVMKCFDNSTGR 405
            DP   LC N  E+  +L F+C      W                   +W+          
Sbjct: 1294 DPECPLCKNHMETINHLFFECQFAVNIWRC---------------IIEWLASLPHTKAAD 1338

Query: 406  GMDISTLSKLVYLLWTIWKTRNNSVFNHLPPNPYAIWRTTFIHYSSYMSLSSPINLSSTA 585
            G +I  LSK + L W IW+ RNN +F  + P+P  +          Y  ++S     ST 
Sbjct: 1339 GPNI--LSKALLLCWQIWEARNNCIFKDIDPHPVRVLNVAGRIGLDYWKINSCPPQKSTG 1396

Query: 586  TLGNSRARNSCRWIHPDGKDVKLNFDGSK--DAAGNARVVLFYVHGIQV*LINFFGQCSV 759
             +       + +W  P    VK+NFDGS   + A    V+  +   +++      GQ S+
Sbjct: 1397 KV-------NIKWEPPPLDWVKVNFDGSMRGNLAATGFVIRDWNGNVRLAGTKNSGQVSI 1449

Query: 760  PQAEYVACRDGIMMTIRLGLDRIIVEGDSQIVIQNLRSHRNIAWSLQMVHRDIS*LMQKF 939
              AE  A RDG+   I  G  +I VEGDS+++I  + +  ++ WS+ ++ +DI  L    
Sbjct: 1450 TVAECFALRDGLAHAIHKGWRKIFVEGDSKLIIDCVNNLVSVPWSISLLVQDIRLLSFYC 1509

Query: 940  RHIQF 954
              I F
Sbjct: 1510 EEISF 1514


>ref|XP_004306275.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
            vesca subsp. vesca]
          Length = 727

 Score = 85.1 bits (209), Expect = 4e-14
 Identities = 55/186 (29%), Positives = 93/186 (50%), Gaps = 2/186 (1%)
 Frame = +1

Query: 403  RGMDISTLSKLVYLLWTIWKTRNNSVFNHLPPNPYAIWRTTFIHYSSYMSLSSPINLSST 582
            R  + +   K++ + W IWK RN++ F ++  +P      T I  ++ +      N +  
Sbjct: 494  RNYNKNDFEKILTICWMIWKARNDASFRNISTSPL-----TIISVAASIEKGFKEN-NMN 547

Query: 583  ATLGNSRARNSCRWIHPDGKDVKLNFDGSKDAAGNA-RVVLFYVHGIQV*LINF-FGQCS 756
              +G+ +  ++ +W  P     K+NFDGS  ++  A   ++    G+ +   +   G+ S
Sbjct: 548  CRVGSFKTPSAIKWQPPPASTFKVNFDGSVTSSSAACGTIIRNSEGVPIITSSKNIGKAS 607

Query: 757  VPQAEYVACRDGIMMTIRLGLDRIIVEGDSQIVIQNLRSHRNIAWSLQMVHRDIS*LMQK 936
            VP  E  A RD I++    GL RIIVEGDS+I+I  +    +  W LQ +  DI  L Q+
Sbjct: 608  VPTTEATALRDSILIAKNRGLTRIIVEGDSKIIIDVVNGKISTPWRLQQIIEDIKNLAQE 667

Query: 937  FRHIQF 954
            F+ I F
Sbjct: 668  FQEICF 673


>ref|XP_004305978.1| PREDICTED: uncharacterized protein LOC101292333 [Fragaria vesca
           subsp. vesca]
          Length = 258

 Score = 85.1 bits (209), Expect = 4e-14
 Identities = 69/221 (31%), Positives = 101/221 (45%), Gaps = 12/221 (5%)
 Frame = +1

Query: 328 LTNVNNQSNMRFTDWVMKCFDNSTGRGMDISTLSKLVYLLWTIWKTRNNSVFNHLPPNPY 507
           L + N+ SN    D V    D    R  D   LSK++ L W IW+ R N +F +   +P+
Sbjct: 17  LAHCNDLSNAN--DMVETLNDIFINRPYDADKLSKIILLCWQIWQKRKNVIFRNEIFSPH 74

Query: 508 AIWRTTFIHYSSYMSLSSPINLSSTATLGNSRARNSCRWIHPDGKDVKLNFDG------S 669
           A+        +    L+S  N SS     +    N+ +W  P    VKLNFDG      S
Sbjct: 75  AVVAGAA---AFTRRLNSQTNTSSCVAAHS----NNIKWSLPSSGYVKLNFDGYVFQHNS 127

Query: 670 KDAAG------NARVVLFYVHGIQV*LINFFGQCSVPQAEYVACRDGIMMTIRLGLDRII 831
             A+G      +   ++ Y   I        G+  VP AE VA RDG++      + R+I
Sbjct: 128 NFASGFVLRDDSGCPLIAYTRRI--------GKTDVPIAEVVALRDGLLSARNRNISRVI 179

Query: 832 VEGDSQIVIQNLRSHRNIAWSLQMVHRDIS*LMQKFRHIQF 954
            EGDSQ+VI  ++S  +I   L  + +DI  +  +F HI F
Sbjct: 180 AEGDSQLVINCIKSTTSIPSKLSSIVKDIIHIATRFEHISF 220


>ref|XP_006285450.1| hypothetical protein CARUB_v10006875mg, partial [Capsella rubella]
           gi|482554155|gb|EOA18348.1| hypothetical protein
           CARUB_v10006875mg, partial [Capsella rubella]
          Length = 438

 Score = 79.3 bits (194), Expect = 2e-12
 Identities = 61/262 (23%), Positives = 111/262 (42%), Gaps = 10/262 (3%)
 Frame = +1

Query: 127 VW--NLQCRMEIFAWTLLHNRLSTCEKL*MKNIIPDPW*KLCGNTAESEEYLLFDCSKVK 300
           +W  N+  +++ F W L    +   + L  +NI  +P+   C +  ES E++ F C +V 
Sbjct: 108 IWQLNIAPKLKHFLWRLASRAIGVADNLRRRNININPYCSWCCSDFESSEHIFFTCPRVH 167

Query: 301 KFWPYA*YFLTNVNNQSNMRFTDWVMKCFDNSTGRGMDISTLSKLVYLLWTIWKTRNNSV 480
             W      LT + +  N+   D +   F       + I   +    +LW +WKTRNN V
Sbjct: 168 PIWRMVGVPLTLLGD-PNISLEDKLRYLFRLHNDSSLPIFKRTSPFLVLWRLWKTRNNLV 226

Query: 481 FNHLPPNPYAIWRTTFI---HYSSYMSLSSPINLSSTATLGNSRARNSCRWIHPDGKDVK 651
           FN        +++   +    + ++++  +PI  +++  L         +W  P    VK
Sbjct: 227 FNRKSTTTEEVFKYICLDTEEWLNHLTPHAPITTTTSKPLSYHAPTRRSKWTPPCQGWVK 286

Query: 652 LNFDGSKDAAGNARVVLFYVHGIQV*LIN-----FFGQCSVPQAEYVACRDGIMMTIRLG 816
            N+D S         + + +H      ++     F G+ +  +AE  A    +  +  LG
Sbjct: 287 CNYDASHHEGNRDSGLGWIIHDSHGTFLHGGMGRFQGRYTAAEAECSALLWALQSSWALG 346

Query: 817 LDRIIVEGDSQIVIQNLRSHRN 882
              I+ EGDSQ + + L S  N
Sbjct: 347 YRSIVFEGDSQTLHRALHSQTN 368


>ref|XP_004308642.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 214

 Score = 78.2 bits (191), Expect = 5e-12
 Identities = 52/188 (27%), Positives = 84/188 (44%), Gaps = 4/188 (2%)
 Frame = +1

Query: 403 RGMDISTLSKLVYLLWTIWKTRNNSVFNHLPPNPYAIWRTTFIHYSSYMSLSSPINLSST 582
           +  D    +K++ L W IWK +N+  F ++   P  +        +SY       NL + 
Sbjct: 8   KNCDKDAFAKVLTLCWQIWKAKNDLSFRNINTRPQTVISVAATIRNSY-------NLYNQ 60

Query: 583 ATLGNSRAR--NSCRWIHPDGKDVKLNFDGS--KDAAGNARVVLFYVHGIQV*LINFFGQ 750
           A+LG    +      W+ P  K VK+NFDGS   ++A +  ++        +      G 
Sbjct: 61  ASLGGGPQQPPEVITWLSPPNKTVKINFDGSVSSNSAASGAIIRDSKGNPILASTRNLGS 120

Query: 751 CSVPQAEYVACRDGIMMTIRLGLDRIIVEGDSQIVIQNLRSHRNIAWSLQMVHRDIS*LM 930
            SVP AE  A RD ++     G   ++VEGDS++VI  +    N  W +  +  DI  + 
Sbjct: 121 TSVPVAEATALRDSLLSVKEKGFIDVVVEGDSKLVIDVMTQKINPPWRIHQIVDDIRKIA 180

Query: 931 QKFRHIQF 954
           + F  I F
Sbjct: 181 ESFSSISF 188


>ref|XP_004293049.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
            vesca subsp. vesca]
          Length = 677

 Score = 77.8 bits (190), Expect = 6e-12
 Identities = 74/281 (26%), Positives = 111/281 (39%), Gaps = 14/281 (4%)
 Frame = +1

Query: 73   VNFSNSHDQPIAQPAFKKVWN--LQCRMEIFAWTLLHNRLSTCEKL*MKNIIPDPW*KLC 246
            +  S SH   +    +K  W   L  ++  F W  L N L TCE L  +NI   P  K+C
Sbjct: 408  IKASTSHK--VDPHVWKIAWGSKLAPKVSNFTWKALANALPTCENLHKRNIGNSPLCKIC 465

Query: 247  GNTAESEEYLLFDCSKVKKFWPYA*YFLTNVNNQSNMRFTDWVMKCFDNSTGRGMDIS-T 423
            G   E+ E+ L  C   +  W +      ++N QS      W+++          D    
Sbjct: 466  GLFPETIEHCLLLCEWTELVW-FGSLAGYSLNKQSITTLEKWLLETDKKGAFLADDKQFC 524

Query: 424  LSKLVYLLWTIWKTRNNSVFNHLPPNPYAIWRTTFIHYSSYMSLSSPINLSSTATLGNSR 603
            L  +++ LW IWK R   V +H  PNP  +      ++  +   +   NL S     +  
Sbjct: 525  LQLILWHLWEIWKHRYEIVMSHGKPNPKVVIEKIKHNFGEW-GAAQVSNLKSLNMTSSQS 583

Query: 604  ARNSCRWIHPDGKDVKLNFDGSKDAAGNARVVLFYVHGIQV*LINFFGQC---------- 753
            A N   W  P    VK+N DG+ D           + GI + + N  G C          
Sbjct: 584  ASND--WCPPPNHVVKVNMDGAWDDQTK-------ISGIGIVIRNHRGACLAGASLYGKY 634

Query: 754  -SVPQAEYVACRDGIMMTIRLGLDRIIVEGDSQIVIQNLRS 873
             S  + E  A   G+ +  RL    I+VEGD   V   ++S
Sbjct: 635  NSTIEMEAEAVVRGLQLAKRLRFQSIVVEGDCYEVFSAIKS 675


>ref|XP_004308776.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 256

 Score = 76.3 bits (186), Expect = 2e-11
 Identities = 60/196 (30%), Positives = 90/196 (45%), Gaps = 3/196 (1%)
 Frame = +1

Query: 376 MKCFDNSTGRGMDISTLSKLVYLLWTIWKTRNNSVFNHLPPNPYAIWRTTFIHYSSYMSL 555
           M+ F N      DI T    + + W IWK RNN +F  +   P       F+H S+ +  
Sbjct: 1   MRIFQNE-----DIVTTKNCLIICWQIWKARNNVIFRSVNFAP-----ADFVHASAAVGA 50

Query: 556 S-SPINLSSTATLGNSRARNSCRWIHPDGKDVKLNFDGSKDA--AGNARVVLFYVHGIQV 726
           S    NL++  +  N    +  +W  P    VKLNFDGS  +   G A  V+   +GI V
Sbjct: 51  SYRAFNLATERSPRNYP--DLIKWHPPPNGVVKLNFDGSVSSNDGGAASFVIRDHNGILV 108

Query: 727 *LINFFGQCSVPQAEYVACRDGIMMTIRLGLDRIIVEGDSQIVIQNLRSHRNIAWSLQMV 906
                 G  SVP AE  A +DG+    R    +I +EGD+ ++I  ++   +I W +   
Sbjct: 109 AGSRNLGNVSVPVAESAALKDGLQAVKRFNYLKIQMEGDAALIINYVQGKCDIPWRIISF 168

Query: 907 HRDIS*LMQKFRHIQF 954
            ++I+ L   F  I F
Sbjct: 169 IKEIAHLSDSFESIAF 184


>ref|XP_004301358.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 313

 Score = 76.3 bits (186), Expect = 2e-11
 Identities = 75/280 (26%), Positives = 123/280 (43%), Gaps = 14/280 (5%)
 Frame = +1

Query: 163 WTLLHNRLSTCEKL*MKNIIPDPW*KLCGNTAESEEYLLFDCSKVKKFWPYA*YF---LT 333
           W  L N L +   L  + I+  P   +CG+  E+ E+ LF C      W  A +F   L 
Sbjct: 2   WRALSNALPSMWYLFQRKIVKTPICGICGDYPETIEHCLFHCP-----WTLAMWFGCSLG 56

Query: 334 NVNNQSNM-RFTDWVMKCFDNSTGRGMDISTLSKLVYL-LWTIWKTRNNSVFNHLPPNPY 507
            + ++  +    +W+++   N+     +   +  LV L LW IWK + + +  +  PNP 
Sbjct: 57  YIPDRGRISHLEEWLLEIHKNAGMFSCEREDVFNLVCLHLWEIWKHKCSVIMRNSTPNPS 116

Query: 508 A----IWRTTFIHYSSYMSLSSPINLSSTATLGNSRARNSCRWIHPDGKDVKLNFDGS-K 672
                I R       + MS+  P           S  R    W+ P    VK+NFDG+ K
Sbjct: 117 LVNENIQRGILNWEEARMSMVQP---------SQSIPRPISLWVPPLVNVVKINFDGAWK 167

Query: 673 DAAGNARVVLFYVHGIQV*LIN---FFGQCSVPQAEYVACRDGIMMTIRLGLDRIIVEGD 843
           ++  N+ + +     + V +     F    S  +AE  A   G+ M + L L+ IIVEGD
Sbjct: 168 ESNHNSGLGIIICSHMGVSIAGASLFRSYNSTVEAEAKALLCGVKMAVVLKLEHIIVEGD 227

Query: 844 SQIVIQNL-RSHRNIAWSLQMVHRDIS*LMQKFRHIQFGW 960
            Q VI+ L  S  +  W +  + + ++ L+  FR I + W
Sbjct: 228 CQEVIKALNESLASPCWRISPILKKVAHLVPLFRRIHWNW 267


>ref|XP_004288816.1| PREDICTED: uncharacterized protein LOC101301910 [Fragaria vesca
           subsp. vesca]
          Length = 252

 Score = 75.5 bits (184), Expect = 3e-11
 Identities = 73/269 (27%), Positives = 114/269 (42%), Gaps = 12/269 (4%)
 Frame = +1

Query: 148 MEIFAWTLLHNRLSTCEKL*MKNIIPDPW*KLCGNTAESEEYLLFDCSKVKKFWPYA*YF 327
           M+ F W LL  RL T ++L    +I D    LC    E+ ++L   C+           F
Sbjct: 1   MKFFGWLLLRGRLKTRDRLSRFGLIQDNSCVLCNEDNETMDHLFGYCN-----------F 49

Query: 328 LTNVNNQSNMRFT-DW-------VMKCF-DNSTGRGMDISTLSKLVYLLWTIWKTRNNSV 480
            T+V N + M    DW         K F DN      D +   K +   W IWK RN++V
Sbjct: 50  ATSVWNAAAMTPPIDWKEGLIKVARKWFIDNH----YDSNLFGKFIVTCWQIWKDRNDAV 105

Query: 481 FNHLPPNPYAIWRTTFIHYSSYMSLSSPINLSSTATLGNSRARNSC-RWIHPDGKDVKLN 657
           F    P   A       H  +  ++ +  + SST  L      +   RW  P    VK+N
Sbjct: 106 FRGKTPRSNATVAAAAAHLLAMSNIQT--DSSSTRNLDTPGTDSEMIRWSPPPFDRVKIN 163

Query: 658 FDGS--KDAAGNARVVLFYVHGIQV*LINFFGQCSVPQAEYVACRDGIMMTIRLGLDRII 831
           FDGS  +++     V+        V   + FG  ++  AE ++ R+ ++     GL R+ 
Sbjct: 164 FDGSVWRNSTAGGFVIRTPNGNPLVAASSNFGITTISVAEALSLRNSLICAKERGLSRVE 223

Query: 832 VEGDSQIVIQNLRSHRNIAWSLQMVHRDI 918
           VEGDS++VI  +       W +  + ++I
Sbjct: 224 VEGDSKLVIDAVNGIAASPWRILKLVQEI 252


>ref|XP_004292563.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
            vesca subsp. vesca]
          Length = 504

 Score = 75.1 bits (183), Expect = 4e-11
 Identities = 68/292 (23%), Positives = 125/292 (42%), Gaps = 11/292 (3%)
 Frame = +1

Query: 118  FKKVWNLQC--RMEIFAWTLLHNRLSTCEKL*MKNIIPDPW*KLCGNTAESEEYLLFDCS 291
            +K +W+++   ++ IF W +LH    T   L  + I+ +P   +CG T E+ E+LL  C 
Sbjct: 204  WKILWSIKTLPKVRIFLWRVLHGAAPTMHSLHKRKIVSNPLCPVCGKTEETFEHLLLLCH 263

Query: 292  KVKKFWPYA*YFLTNVNNQSNMRFTDWVMKCFDNSTGRGMDISTLSKLVYLLWTIWKTRN 471
             V   W +       ++ +    F  W++  +++      + + L+ +  + W IWK R 
Sbjct: 264  WVNPIW-FGSPLGIRIDKRKITTFDRWLISIYNHCPSSERE-AVLTLISTICWAIWKERC 321

Query: 472  NSVFNH---LPPNPYAIWRTTFIHYSSYMSLSSPINLSSTATLGNSRA-RNSCRWIHPDG 639
            + V+ H    PP      R   + +             ++A++ NSR  R   +W+ P  
Sbjct: 322  HFVYQHREVSPPFTIRAARNLALEFR-----------HASASMRNSRVPRLHMQWLPPPF 370

Query: 640  KDVKLNFDGS---KDAAGNARVVLFYVHGIQV*LINFFGQC-SVPQAEYVACRDGIMMTI 807
               K+N D S    D  G   +V+   + + +   +   +C SV  A+ VA   G  +  
Sbjct: 371  GHHKINSDASWFPPDHTG-VGIVIRDSNRVMIAGSSLLKKCGSVTDAKAVALLVGSELVA 429

Query: 808  RLGLDRIIVEGDSQIVIQNL-RSHRNIAWSLQMVHRDIS*LMQKFRHIQFGW 960
             L L  II E D + VI  + ++H  + W   ++ + I      F    + W
Sbjct: 430  SLQLQNIIFESDLEEVITEINKNHNKVNWRTHLIIQQIRRSCSMFNSCSWVW 481


>ref|XP_004298270.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 393

 Score = 74.3 bits (181), Expect = 7e-11
 Identities = 70/293 (23%), Positives = 111/293 (37%), Gaps = 16/293 (5%)
 Frame = +1

Query: 118 FKKVW--NLQCRMEIFAWTLLHNRLSTCEKL*MKNIIPDPW*KLCGNTAESEEYLLFDCS 291
           +KK+W  N+  ++  F W L    + T   L  +  I D     CGN  E+  +L  DC 
Sbjct: 51  WKKIWQANVPPKVRSFIWRLCLEVIPTRAALSRRLFITDVRCIFCGNEVETGLHLFRDCP 110

Query: 292 KVKKFWPYA*YFLTNVNNQSNMRFTDWVMKCFDNSTGRGMDISTLSKLVYLLWTIWKTRN 471
            V+ FW +    L + +   +     WV    DN     + +  L      LWT+W  RN
Sbjct: 111 VVQSFWKHNPLHLRSYSYPGS-TLAVWVFLVMDN-----LSMQQLEGFFMALWTVWIERN 164

Query: 472 NSVFNHLPPNP--YAIWRTTFIHYSSYMSLSSPINLSSTATLGNSRARNSCRWIHPDGKD 645
           N ++     NP   ++W    +     +     + +           R   +W  P    
Sbjct: 165 NMIWRGGSCNPSNMSVWAMQLLEEYKKVHTKPSVKMK----------RPRAKWCCPPSGR 214

Query: 646 VKLNFDGSKDAAGNARVVLFYVHGIQV*LINFFGQC------------SVPQAEYVACRD 789
           +KLN DG+    G          GI V + N +G C            S    E  A R 
Sbjct: 215 LKLNIDGAYLEDGRK-------GGIGVVVRNEYGNCVAALSRHMPYASSAMHMEAEALRA 267

Query: 790 GIMMTIRLGLDRIIVEGDSQIVIQNLRSHRNIAWSLQMVHRDIS*LMQKFRHI 948
            +++ I  G D + +EGD  IV++ L +       +  +  D    M+ FR I
Sbjct: 268 SLLIAIHQGWDEVEIEGDCAIVMKALANTDGDVIEVSSILSDCRHYMEAFRLI 320


>ref|XP_002865522.1| hypothetical protein ARALYDRAFT_917523 [Arabidopsis lyrata subsp.
           lyrata] gi|297311357|gb|EFH41781.1| hypothetical protein
           ARALYDRAFT_917523 [Arabidopsis lyrata subsp. lyrata]
          Length = 352

 Score = 73.6 bits (179), Expect = 1e-10
 Identities = 74/308 (24%), Positives = 127/308 (41%), Gaps = 14/308 (4%)
 Frame = +1

Query: 73  VNFSNSHDQPIAQPAFK-----KVWNLQC--RMEIFAWTLLHNRLSTCEKL*MKNIIPDP 231
           +N S   D+P A  A       K+WNL    +++ F W      +   E L  +N+  +P
Sbjct: 1   MNLSIEDDEPKAPLALHPDIATKIWNLNIVPKLKHFLWRYASKAIGIAENLRRRNMNVNP 60

Query: 232 W*KLCGNTAESEEYLLFDCSKVKKFWPYA*YFLTNVNNQSNMRFTDWVMKCFDNSTGRGM 411
           +   C N  E+ ++ LF C  ++  W  A     ++ ++ +  F   +    D    + +
Sbjct: 61  YCSRCCNELETNDHTLFSCPSIRPIWRAAGIPTQDLWDR-DKPFEGKIRFLLDLHDNKHI 119

Query: 412 DISTLSKLVYLLWTIWKTRNNSVFNHLPPNPYAIWRTTFIHYSSYMSLSSPIN-LSSTAT 588
           D        +LLW IWKTRN+ +FNH       I     I    ++      +       
Sbjct: 120 DKVCRYLPFWLLWRIWKTRNDLIFNHKVTKGEDIVGQALIDTKEWLDCQDRTHGPQHDGK 179

Query: 589 LGNSRARNSCRWIHPDGKDVKLNFDGS----KDAAGNARVVLFYVHG--IQV*LINFFGQ 750
           L   R+  S +W  P+   VK NFD S      ++G  R++    +G  +   +  F G+
Sbjct: 180 LQGVRSSRSSKWCKPERGYVKCNFDASHYEGNQSSGLGRIIR-DSNGTCLDCGMGKFQGR 238

Query: 751 CSVPQAEYVACRDGIMMTIRLGLDRIIVEGDSQIVIQNLRSHRNIAWSLQMVHRDIS*LM 930
            ++ +AE  A    I  +  LG   +  EGD+  ++ NL +   I   L+    +I    
Sbjct: 239 QTIEEAECSALIWAIQASWALGYRHVEFEGDNANIV-NLINEGGINLRLKHYMEEIWQWR 297

Query: 931 QKFRHIQF 954
             F  I+F
Sbjct: 298 NMFNSIKF 305


>ref|XP_007212486.1| hypothetical protein PRUPE_ppa019229mg, partial [Prunus persica]
           gi|462408351|gb|EMJ13685.1| hypothetical protein
           PRUPE_ppa019229mg, partial [Prunus persica]
          Length = 489

 Score = 73.2 bits (178), Expect = 2e-10
 Identities = 64/238 (26%), Positives = 103/238 (43%), Gaps = 6/238 (2%)
 Frame = +1

Query: 112 PAFKKVWNLQC--RMEIFAWTLLHNRLSTCEKL*--MKNIIPDPW*KLCGNTAESEEYLL 279
           P  KK+W+L    ++++F W L+  RL     L   + NI P+    L  N  E+  +L 
Sbjct: 263 PLLKKMWSLTLPPKVKLFPWLLIRKRLQVRSHLYKFLPNINPEC--PLYKNHMETINHLF 320

Query: 280 FDCSKVKKFWPYA*YFLTNVNNQSNMRFTDWVMKCFDNSTGRGMDISTLSKLVYLLWTIW 459
           F+       W    +F + V  Q N    +W+          G ++  LSK + L W IW
Sbjct: 321 FERQFAVNIWGCTYFFPSYV--QQNFDGIEWLASLPHTKATDGPNV--LSKALLLCWQIW 376

Query: 460 KTRNNSVFNHLPPNPYAIWRTTFIHYSSYMSLSSPINLSSTATLGNSRARNSCRWIHPDG 639
           + RNN +F  + P+P  +          Y  ++S           NS  + + +W  P  
Sbjct: 377 EARNNCIFKDIDPHPVKVLNVAGRIGLDYWKINS-------CPPQNSTGKVNIKWKPPPL 429

Query: 640 KDVKLNFDGS--KDAAGNARVVLFYVHGIQV*LINFFGQCSVPQAEYVACRDGIMMTI 807
             VK+NFDGS   + A    V+  +   +++      GQ S+  AE +A RDG+   I
Sbjct: 430 DWVKVNFDGSVRGNLAATGFVIRDWNGNVRLAGAKNSGQVSITVAECLALRDGLAHAI 487


>ref|XP_004305406.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 399

 Score = 72.8 bits (177), Expect = 2e-10
 Identities = 62/269 (23%), Positives = 111/269 (41%), Gaps = 11/269 (4%)
 Frame = +1

Query: 181 RLSTCEKL*MKNIIPDPW*KLCGNTAESEEYLLFDCSKVKKFWPYA*YFLTNVNNQSNMR 360
           +L T ++L     I D    LC N  E+ ++L   C    + +         V   + M 
Sbjct: 93  KLKTTDRLSKFGYIDDNSCPLCDNDNETADHLFGHCDFTTEVFRL-------VGISAPMD 145

Query: 361 FTDWVMKCF-DNSTGRGMDISTLSKLVYLLWTIWKTRNNSVFNHLPPNPYAIWRTTFIHY 537
           +    +K   +    +  D    +K++ + W IWK RN+++F  +      +  T   H+
Sbjct: 146 WHKGYLKVLREMFINQPYDKFLFAKVLIIYWQIWKARNDTIFRDVITTATNVVATAAFHF 205

Query: 538 SSYMSLSSPINLSSTATLGNSRARNSCRWIHPDGKDVKLNFDGS---KDAAG-------N 687
           +      + +    + T       ++ RW+ P    +K+NFDGS   + A G       +
Sbjct: 206 NETALYKAVVGGGISQT-----TPSTIRWLPPHNNFIKINFDGSVQGRSAVGGFVFRNSD 260

Query: 688 ARVVLFYVHGIQV*LINFFGQCSVPQAEYVACRDGIMMTIRLGLDRIIVEGDSQIVIQNL 867
             V+L    G+        G  ++P AE  A RD ++     G   + VEGDS++VI  +
Sbjct: 261 GNVILAAAKGL--------GSTTIPTAEATALRDNLVKARDRGYMNVQVEGDSKLVIDAI 312

Query: 868 RSHRNIAWSLQMVHRDIS*LMQKFRHIQF 954
               +  W LQ + +DI  +   F  + F
Sbjct: 313 NGKLSPPWRLQKIVQDIRTIATSFSSVCF 341


>ref|XP_007204004.1| hypothetical protein PRUPE_ppa025711mg, partial [Prunus persica]
            gi|462399535|gb|EMJ05203.1| hypothetical protein
            PRUPE_ppa025711mg, partial [Prunus persica]
          Length = 534

 Score = 72.8 bits (177), Expect = 2e-10
 Identities = 70/274 (25%), Positives = 114/274 (41%), Gaps = 20/274 (7%)
 Frame = +1

Query: 88   SHDQPIAQPAFKKVWNLQC--RMEIFAWTLLHNRLSTCEKL*MKNIIPDPW*KLCGNTAE 261
            S  + + +  +K VW  Q   ++  F W ++   L T + L  +++   P   +CG   E
Sbjct: 274  SSSRVLDKALWKLVWGSQMVPKLMNFWWRMVRGCLPTRDALFRRHLGTSPLCPICGEFPE 333

Query: 262  SEEYLLFDCSKVKKFWPYA*YFLTNVNNQSNMRFTDWVMKCFDNSTGRGMDISTL-SKLV 438
            S E+L   C+ V+  W +       +N QS    ++W+M+    S   G D   L S++V
Sbjct: 334  SVEHLFLLCNWVQLVW-FGGPLNYKINRQSITSMSEWMMQVLKISQSLGYDRKWLISQIV 392

Query: 439  YLLWTIWKTRNNSVFNHLPPNPYAIWRTTFIHYSSYMSLSSPINL------SSTATLGNS 600
            Y  W+IWK+R ++VF+ +   P+   RT  +      +L +  NL       +       
Sbjct: 393  YTCWSIWKSRCSAVFDDISVCPH---RTLLV----AKNLINDFNLVRCPPGDAILEEDTD 445

Query: 601  RARNSCRWIHPDGKDVKLNFD----GSKDAAGNARVVLFYVHGIQV*LINFFGQCSVP-- 762
              +   RW  P     K+N D     S   AG   VV  Y         NF G C V   
Sbjct: 446  DGQRVVRWFPPPISVYKINIDAAWVSSTLQAGLGVVVRNYAS-------NFMGGCCVSRL 498

Query: 763  -----QAEYVACRDGIMMTIRLGLDRIIVEGDSQ 849
                 +AE  A   G+ +   +G   ++ E DS+
Sbjct: 499  ASSAIEAEAHAALKGVKLAAEMGFPNVVFESDSK 532


>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1524

 Score = 72.8 bits (177), Expect = 2e-10
 Identities = 77/290 (26%), Positives = 118/290 (40%), Gaps = 11/290 (3%)
 Frame = +1

Query: 124  KVWNLQC--RMEIFAWTLLHNRLSTCEKL*MKNIIPDPW*KLCGNTAESEEYLLFDCSKV 297
            ++WNL    +++ F W  L   L+T E+L  + +  DP    C    ES  + LF C   
Sbjct: 1201 RIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPICPRCHRENESINHALFTCPFA 1260

Query: 298  KKFWPYA*YFLTNVNNQSNMRFTDWVMKCFDNSTGRGMD--ISTLSKL--VYLLWTIWKT 465
               W     +L++ +   N   ++   +   N      D  +S   KL  V+L+W IWK 
Sbjct: 1261 TMAW-----WLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKA 1315

Query: 466  RNNSVFNHLPPNPYAIWRTTFIHYSSYMSLSSPINLSSTATLGNSRARNSCRWIHPDGKD 645
            RNN VFN    +P     +       +++ +     + + T     A N   W +P    
Sbjct: 1316 RNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPT--RQIAENKIEWRNPPATY 1373

Query: 646  VKLNFDGSKD-----AAGNARVVLFYVHGIQV*LINFFGQCSVPQAEYVACRDGIMMTIR 810
            VK NFD   D     A G   +   Y   I    +      +  +AE  A    +  T  
Sbjct: 1374 VKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWI 1433

Query: 811  LGLDRIIVEGDSQIVIQNLRSHRNIAWSLQMVHRDIS*LMQKFRHIQFGW 960
             G  ++ +EGD Q +I NL +  +   SL     DIS    KF  IQFG+
Sbjct: 1434 RGYTQVFMEGDCQTLI-NLINGISFHSSLANHLEDISFWANKFASIQFGF 1482


>ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis thaliana]
            gi|6682231|gb|AAF23283.1|AC016661_8 putative non-LTR
            reverse transcriptase [Arabidopsis thaliana]
            gi|332641254|gb|AEE74775.1| RNase H domain-containing
            protein [Arabidopsis thaliana]
          Length = 484

 Score = 72.4 bits (176), Expect = 3e-10
 Identities = 78/288 (27%), Positives = 115/288 (39%), Gaps = 9/288 (3%)
 Frame = +1

Query: 124  KVWNLQC--RMEIFAWTLLHNRLSTCEKL*MKNIIPDPW*KLCGNTAESEEYLLFDCSKV 297
            ++WNL    +++ F W  L   L+T E+L  + +  DP    C    ES  + LF C   
Sbjct: 161  RIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFA 220

Query: 298  KKFWPYA*YFLTNVNNQSNMRFTDWVMKCFDNSTGRGMDISTLSKL--VYLLWTIWKTRN 471
               W  +   L      SN  F + +    +      M  S   KL  V+L+W IWK RN
Sbjct: 221  TMAWRLSDSSLIRNQLMSN-DFEENISNILNFVQDTTM--SDFHKLLPVWLIWRIWKARN 277

Query: 472  NSVFNHLPPNPYAIWRTTFIHYSSYMSLSSPINLSSTATLGNSRARNSCRWIHPDGKDVK 651
            N VFN    +P     +       +++ +     + + T     A N   W +P    VK
Sbjct: 278  NVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPT--RQIAENKIEWRNPPATYVK 335

Query: 652  LNFDGSKD-----AAGNARVVLFYVHGIQV*LINFFGQCSVPQAEYVACRDGIMMTIRLG 816
             NFD   D     A G   +   Y   I    +      +  +AE  A    +  T   G
Sbjct: 336  CNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRG 395

Query: 817  LDRIIVEGDSQIVIQNLRSHRNIAWSLQMVHRDIS*LMQKFRHIQFGW 960
              ++ +EGD Q +I NL +  +   SL     DIS    KF  IQFG+
Sbjct: 396  YTQVFMEGDCQTLI-NLINGISFHSSLANHLEDISFWANKFASIQFGF 442


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1750

 Score = 72.4 bits (176), Expect = 3e-10
 Identities = 78/288 (27%), Positives = 115/288 (39%), Gaps = 9/288 (3%)
 Frame = +1

Query: 124  KVWNLQC--RMEIFAWTLLHNRLSTCEKL*MKNIIPDPW*KLCGNTAESEEYLLFDCSKV 297
            ++WNL    +++ F W  L   L+T E+L  + +  DP    C    ES  + LF C   
Sbjct: 1427 RIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFA 1486

Query: 298  KKFWPYA*YFLTNVNNQSNMRFTDWVMKCFDNSTGRGMDISTLSKL--VYLLWTIWKTRN 471
               W  +   L      SN  F + +    +      M  S   KL  V+L+W IWK RN
Sbjct: 1487 TMAWRLSDSSLIRNQLMSN-DFEENISNILNFVQDTTM--SDFHKLLPVWLIWRIWKARN 1543

Query: 472  NSVFNHLPPNPYAIWRTTFIHYSSYMSLSSPINLSSTATLGNSRARNSCRWIHPDGKDVK 651
            N VFN    +P     +       +++ +     + + T     A N   W +P    VK
Sbjct: 1544 NVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPT--RQIAENKIEWRNPPATYVK 1601

Query: 652  LNFDGSKD-----AAGNARVVLFYVHGIQV*LINFFGQCSVPQAEYVACRDGIMMTIRLG 816
             NFD   D     A G   +   Y   I    +      +  +AE  A    +  T   G
Sbjct: 1602 CNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRG 1661

Query: 817  LDRIIVEGDSQIVIQNLRSHRNIAWSLQMVHRDIS*LMQKFRHIQFGW 960
              ++ +EGD Q +I NL +  +   SL     DIS    KF  IQFG+
Sbjct: 1662 YTQVFMEGDCQTLI-NLINGISFHSSLANHLEDISFWANKFASIQFGF 1708