BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia22_contig00011102
         (589 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]   291   7e-77
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   289   3e-76
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   282   4e-74
emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]   282   4e-74
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   282   6e-74
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th...   279   4e-73
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   277   1e-72
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   276   2e-72
ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   276   3e-72
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      276   3e-72
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps...   275   7e-72
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall...   275   7e-72
gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza]   275   9e-72
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   275   9e-72
gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu...   274   1e-71
gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum de...   274   1e-71
gb|ABI34311.1| RNA dependent RNA polymerase family protein [Sola...   274   1e-71
gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali...   274   2e-71
ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha...   274   2e-71
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      274   2e-71

>emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]
          Length = 697

 Score =  291 bits (746), Expect = 7e-77
 Identities = 152/200 (76%), Positives = 165/200 (82%), Gaps = 4/200 (2%)
 Frame = +1

Query: 1   SKETLSVRRXXXXXXXXXXVK----TYVFSDGIGKISAQFAQGVAIKCGLESSTPSAFQI 168
           SKETL V +          +     TYVFSDGIGKISA+ A  VAIKCG +SSTPSAFQI
Sbjct: 40  SKETLKVAKHEIEIIPDIEIHRDGTTYVFSDGIGKISAELAHRVAIKCGCKSSTPSAFQI 99

Query: 169 RYGGYKGVVAVDPKSFVKLSLRRSMSKYDSENTKLDVLAWSKFQPCFLNRQLVTLLSTLG 348
           RYGGYKGVVAVDP S  KLSLR+SM KY+SENT LDVL+WSK++PCFLNRQL+TLLSTLG
Sbjct: 100 RYGGYKGVVAVDPTSSRKLSLRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLG 159

Query: 349 VGDDVFEKKQSEVIVQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPFLS 528
           V D VFEKKQ E + QLD ILKDPLRAQ+ALELMSPGENTNIL EMLMCGYKPD EPFLS
Sbjct: 160 VKDHVFEKKQREAVDQLDTILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLS 219

Query: 529 MMLQIFRASKLLELRTKTRI 588
           MMLQ FRA+KLLELRTKTRI
Sbjct: 220 MMLQTFRAAKLLELRTKTRI 239


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  289 bits (740), Expect = 3e-76
 Identities = 151/200 (75%), Positives = 164/200 (82%), Gaps = 4/200 (2%)
 Frame = +1

Query: 1    SKETLSVRRXXXXXXXXXXVK----TYVFSDGIGKISAQFAQGVAIKCGLESSTPSAFQI 168
            SKETL V +                TYVFSDGIGKISA+ A  VAIKCG ++STPSAFQI
Sbjct: 496  SKETLKVAKHEIEIIPDIETHRDGTTYVFSDGIGKISAELAHRVAIKCGCKNSTPSAFQI 555

Query: 169  RYGGYKGVVAVDPKSFVKLSLRRSMSKYDSENTKLDVLAWSKFQPCFLNRQLVTLLSTLG 348
            RYGGYKGVVAVDP S  KLSLR+SM KY+SENT LDVL+WSK++PCFLNRQL+TLLSTLG
Sbjct: 556  RYGGYKGVVAVDPTSSRKLSLRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLG 615

Query: 349  VGDDVFEKKQSEVIVQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPFLS 528
            V D VFEKKQ E + QLD ILKDPLRAQ+ALELMSPGENTNIL EMLMCGYKPD EPFLS
Sbjct: 616  VKDHVFEKKQREAVDQLDTILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLS 675

Query: 529  MMLQIFRASKLLELRTKTRI 588
            MMLQ FRA+KLLELRTKTRI
Sbjct: 676  MMLQTFRAAKLLELRTKTRI 695


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  282 bits (722), Expect = 4e-74
 Identities = 148/200 (74%), Positives = 161/200 (80%), Gaps = 4/200 (2%)
 Frame = +1

Query: 1    SKETLSVRRXXXXXXXXXXVK----TYVFSDGIGKISAQFAQGVAIKCGLESSTPSAFQI 168
            SKETL V +          +     TYVFSDGIGKIS Q A  VAIKCG +SSTPSAFQI
Sbjct: 498  SKETLKVAKDEIENIPDIEIHKGRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQI 557

Query: 169  RYGGYKGVVAVDPKSFVKLSLRRSMSKYDSENTKLDVLAWSKFQPCFLNRQLVTLLSTLG 348
            RYGGYKGVVAVDP S  KLSLR+SM KY+S+NT LDVLAWSK+QP FLNRQL+TLLSTLG
Sbjct: 558  RYGGYKGVVAVDPTSSRKLSLRKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLG 617

Query: 349  VGDDVFEKKQSEVIVQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPFLS 528
            V D VFEKKQ   + QLD ILKDP+ AQ+ALELMSPGENTN+L EMLMCGYKPD EPFLS
Sbjct: 618  VKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLS 677

Query: 529  MMLQIFRASKLLELRTKTRI 588
            MMLQ FRA+KLLELRTKTRI
Sbjct: 678  MMLQTFRAAKLLELRTKTRI 697


>emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
          Length = 654

 Score =  282 bits (722), Expect = 4e-74
 Identities = 148/200 (74%), Positives = 161/200 (80%), Gaps = 4/200 (2%)
 Frame = +1

Query: 1   SKETLSVRRXXXXXXXXXXVK----TYVFSDGIGKISAQFAQGVAIKCGLESSTPSAFQI 168
           SKETL V +          +     TYVFSDGIGKIS Q A  VAIKCG +SSTPSAFQI
Sbjct: 40  SKETLKVAKDEIENIPDIEIHKXRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQI 99

Query: 169 RYGGYKGVVAVDPKSFVKLSLRRSMSKYDSENTKLDVLAWSKFQPCFLNRQLVTLLSTLG 348
           RYGGYKGVVAVDP S  KLSLR+SM KY+S+NT LDVLAWSK+QP FLNRQL+TLLSTLG
Sbjct: 100 RYGGYKGVVAVDPTSSRKLSLRKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLG 159

Query: 349 VGDDVFEKKQSEVIVQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPFLS 528
           V D VFEKKQ   + QLD ILKDP+ AQ+ALELMSPGENTN+L EMLMCGYKPD EPFLS
Sbjct: 160 VKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLS 219

Query: 529 MMLQIFRASKLLELRTKTRI 588
           MMLQ FRA+KLLELRTKTRI
Sbjct: 220 MMLQTFRAAKLLELRTKTRI 239


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  282 bits (721), Expect = 6e-74
 Identities = 145/200 (72%), Positives = 164/200 (82%), Gaps = 4/200 (2%)
 Frame = +1

Query: 1    SKETLSVRRXXXXXXXXXXVKT----YVFSDGIGKISAQFAQGVAIKCGLESSTPSAFQI 168
            SKETLSV            ++     YVFSDGIGK+SA+FA+ VA KCGL+ + PSAFQI
Sbjct: 513  SKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQI 572

Query: 169  RYGGYKGVVAVDPKSFVKLSLRRSMSKYDSENTKLDVLAWSKFQPCFLNRQLVTLLSTLG 348
            RYGGYKGVVA DP S  KLSLR SM KY+SE TKLDVLAWSK+QPCFLNRQL++LLSTLG
Sbjct: 573  RYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLG 632

Query: 349  VGDDVFEKKQSEVIVQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPFLS 528
            + D++FEKKQ E + QLDAIL DPL+AQ+ALELMSPGENTNIL E+L+CGYKPD EPFLS
Sbjct: 633  IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLS 692

Query: 529  MMLQIFRASKLLELRTKTRI 588
            MMLQ FRASKLLELRTKTRI
Sbjct: 693  MMLQTFRASKLLELRTKTRI 712


>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
            1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
            RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
            cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score =  279 bits (714), Expect = 4e-73
 Identities = 147/200 (73%), Positives = 163/200 (81%), Gaps = 4/200 (2%)
 Frame = +1

Query: 1    SKETLSVRRXXXXXXXXXXVK----TYVFSDGIGKISAQFAQGVAIKCGLESSTPSAFQI 168
            S ETLSV +          +K     YVFSDGIGKISA+FA+ VA KC L   TPSAFQI
Sbjct: 502  STETLSVAKDEIEIIDDVEIKRDGINYVFSDGIGKISAKFAKKVAAKCRLNGRTPSAFQI 561

Query: 169  RYGGYKGVVAVDPKSFVKLSLRRSMSKYDSENTKLDVLAWSKFQPCFLNRQLVTLLSTLG 348
            R GG+KGVVAVDP S  KLSLR SMSKY+SENTKLDVLAWSK+QPCFLNRQL+TLLSTLG
Sbjct: 562  RIGGFKGVVAVDPTSSKKLSLRGSMSKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLG 621

Query: 349  VGDDVFEKKQSEVIVQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPFLS 528
            V D  FE+KQ EV+ QL+AIL DPL+AQ+ALELMSPGENTNIL EML+CGY+PD EPFLS
Sbjct: 622  VPDHAFEEKQREVVDQLNAILTDPLKAQEALELMSPGENTNILKEMLLCGYEPDAEPFLS 681

Query: 529  MMLQIFRASKLLELRTKTRI 588
            MMLQ FRASKLLELRTK+RI
Sbjct: 682  MMLQTFRASKLLELRTKSRI 701


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score =  277 bits (709), Expect = 1e-72
 Identities = 148/200 (74%), Positives = 161/200 (80%), Gaps = 4/200 (2%)
 Frame = +1

Query: 1    SKETLSVRRXXXXXXXXXXVKT----YVFSDGIGKISAQFAQGVAIKCGLESSTPSAFQI 168
            S ETLSV            V      Y+FSDGIGKISA+FA+ VAIKCG +  TPSAFQI
Sbjct: 509  STETLSVSSHEIEIIPDIEVSRGGTRYLFSDGIGKISAEFARKVAIKCGCKGFTPSAFQI 568

Query: 169  RYGGYKGVVAVDPKSFVKLSLRRSMSKYDSENTKLDVLAWSKFQPCFLNRQLVTLLSTLG 348
            RY GYKGVVAVDP S  KLSLRRSM KY+SENTKLDVLA SK+QPCFLNRQL+TLLSTLG
Sbjct: 569  RYAGYKGVVAVDPTSSKKLSLRRSMFKYESENTKLDVLAHSKYQPCFLNRQLITLLSTLG 628

Query: 349  VGDDVFEKKQSEVIVQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPFLS 528
            V D  FE+KQ E + QLDA+L DPLRAQ+ALELMSPGENTNIL EML+CGY+PD EPFLS
Sbjct: 629  VPDHHFERKQREAVDQLDAMLTDPLRAQEALELMSPGENTNILKEMLLCGYQPDAEPFLS 688

Query: 529  MMLQIFRASKLLELRTKTRI 588
            MMLQ FRASKLLELRTKTRI
Sbjct: 689  MMLQTFRASKLLELRTKTRI 708


>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1107

 Score =  276 bits (707), Expect = 2e-72
 Identities = 143/200 (71%), Positives = 164/200 (82%), Gaps = 4/200 (2%)
 Frame = +1

Query: 1    SKETLSVRRXXXXXXXXXXVKT----YVFSDGIGKISAQFAQGVAIKCGLESSTPSAFQI 168
            S+ETL+VR           + +    YVFSDGIGKISA+FA+ VA KCGL   +PSAFQI
Sbjct: 507  SRETLNVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQI 566

Query: 169  RYGGYKGVVAVDPKSFVKLSLRRSMSKYDSENTKLDVLAWSKFQPCFLNRQLVTLLSTLG 348
            RYGGYKGVVAVDP S  KLSLR+SMSK++SENTKLDVLAWSK+QPC++NRQL+TLLSTLG
Sbjct: 567  RYGGYKGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLG 626

Query: 349  VGDDVFEKKQSEVIVQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPFLS 528
            V D VFEKKQ EV+ +LDAIL DPL A +AL LM+PGENTNIL  +++CGYKPD EPFLS
Sbjct: 627  VEDSVFEKKQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLS 686

Query: 529  MMLQIFRASKLLELRTKTRI 588
            MMLQ FRASKLLELRTKTRI
Sbjct: 687  MMLQNFRASKLLELRTKTRI 706


>ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1097

 Score =  276 bits (706), Expect = 3e-72
 Identities = 142/200 (71%), Positives = 164/200 (82%), Gaps = 4/200 (2%)
 Frame = +1

Query: 1    SKETLSVRRXXXXXXXXXXVKT----YVFSDGIGKISAQFAQGVAIKCGLESSTPSAFQI 168
            S+ETL+VR           + +    YVFSDGIGKISA+FA+ VA KCGL   +PSAFQI
Sbjct: 497  SRETLNVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQI 556

Query: 169  RYGGYKGVVAVDPKSFVKLSLRRSMSKYDSENTKLDVLAWSKFQPCFLNRQLVTLLSTLG 348
            RYGGYKGVVAVDP S  KLSLR+SMSK++SENTKLDVLAWSK+QPC++NRQL+TLLSTLG
Sbjct: 557  RYGGYKGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLG 616

Query: 349  VGDDVFEKKQSEVIVQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPFLS 528
            + D VFEKKQ EV+ +LDAIL DPL A +AL LM+PGENTNIL  +++CGYKPD EPFLS
Sbjct: 617  IKDSVFEKKQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLS 676

Query: 529  MMLQIFRASKLLELRTKTRI 588
            MMLQ FRASKLLELRTKTRI
Sbjct: 677  MMLQNFRASKLLELRTKTRI 696


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  276 bits (706), Expect = 3e-72
 Identities = 144/200 (72%), Positives = 161/200 (80%), Gaps = 4/200 (2%)
 Frame = +1

Query: 1    SKETLSVRRXXXXXXXXXXVKT----YVFSDGIGKISAQFAQGVAIKCGLESSTPSAFQI 168
            S ETLSV +          +      YVFSDGIGKISA+FA+ VA KC L+  TPSAFQI
Sbjct: 502  STETLSVSKDEINLIPDIEIMKDGIKYVFSDGIGKISAEFAKKVAAKCRLKGCTPSAFQI 561

Query: 169  RYGGYKGVVAVDPKSFVKLSLRRSMSKYDSENTKLDVLAWSKFQPCFLNRQLVTLLSTLG 348
            R GG+KGVVA+DP S  KLSLR+SM KY+SENTKLDVLAWSK+QPCFLNRQL+TLLSTLG
Sbjct: 562  RIGGFKGVVAIDPTSSWKLSLRKSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLG 621

Query: 349  VGDDVFEKKQSEVIVQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPFLS 528
            V D  FEKKQ EV+ QL+A+L DPL AQ+ALELMSPGENTNIL EML+CGYKPD EPFLS
Sbjct: 622  VPDRAFEKKQREVVDQLNALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLS 681

Query: 529  MMLQIFRASKLLELRTKTRI 588
            MML+ FRASKLLELRTK RI
Sbjct: 682  MMLETFRASKLLELRTKARI 701


>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
            gi|482575337|gb|EOA39524.1| hypothetical protein
            CARUB_v10008144mg [Capsella rubella]
          Length = 1107

 Score =  275 bits (703), Expect = 7e-72
 Identities = 143/200 (71%), Positives = 163/200 (81%), Gaps = 4/200 (2%)
 Frame = +1

Query: 1    SKETLSVRRXXXXXXXXXXVK----TYVFSDGIGKISAQFAQGVAIKCGLESSTPSAFQI 168
            S+ETL+VR                  YVFSDGIGKISA+FA+ VA KCGL   +PSAFQI
Sbjct: 506  SRETLNVRSDEIEVIPDVEAMYLDTRYVFSDGIGKISAEFARKVAKKCGLTEFSPSAFQI 565

Query: 169  RYGGYKGVVAVDPKSFVKLSLRRSMSKYDSENTKLDVLAWSKFQPCFLNRQLVTLLSTLG 348
            RYGGYKGVVAVDP S  KLSLR+SMSK++S NTKLDVLAWSK+QPC+LNRQ++TLLSTLG
Sbjct: 566  RYGGYKGVVAVDPNSSKKLSLRKSMSKFESGNTKLDVLAWSKYQPCYLNRQIITLLSTLG 625

Query: 349  VGDDVFEKKQSEVIVQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPFLS 528
            V D+VFEKKQ EV+ +LDAIL DPL A +AL LM+PGENTNIL ++L+CGYKPD EPFLS
Sbjct: 626  VKDNVFEKKQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKQLLLCGYKPDAEPFLS 685

Query: 529  MMLQIFRASKLLELRTKTRI 588
            MMLQ FRASKLLELRTKTRI
Sbjct: 686  MMLQNFRASKLLELRTKTRI 705


>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
          Length = 1107

 Score =  275 bits (703), Expect = 7e-72
 Identities = 142/200 (71%), Positives = 164/200 (82%), Gaps = 4/200 (2%)
 Frame = +1

Query: 1    SKETLSVRRXXXXXXXXXXVKT----YVFSDGIGKISAQFAQGVAIKCGLESSTPSAFQI 168
            S+ETL+VR           + +    YVFSDGIGKISA+FA+ VA KCGL   +PSAFQI
Sbjct: 507  SRETLNVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQI 566

Query: 169  RYGGYKGVVAVDPKSFVKLSLRRSMSKYDSENTKLDVLAWSKFQPCFLNRQLVTLLSTLG 348
            RYGGYKGVVAVDP S  KLSLR+SMSK++SENTKLDVLAWSK+QPC++NRQL+TLLSTLG
Sbjct: 567  RYGGYKGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLG 626

Query: 349  VGDDVFEKKQSEVIVQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPFLS 528
            V D VF+KKQ EV+ +LDAIL DPL A +AL LM+PGENTNIL  +++CGYKPD EPFLS
Sbjct: 627  VKDSVFKKKQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLS 686

Query: 529  MMLQIFRASKLLELRTKTRI 588
            MMLQ FRASKLLELRTKTRI
Sbjct: 687  MMLQNFRASKLLELRTKTRI 706


>gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza]
          Length = 1101

 Score =  275 bits (702), Expect = 9e-72
 Identities = 133/175 (76%), Positives = 151/175 (86%)
 Frame = +1

Query: 64   TYVFSDGIGKISAQFAQGVAIKCGLESSTPSAFQIRYGGYKGVVAVDPKSFVKLSLRRSM 243
            TY+FSDGIGKIS+ FA+ VA KCG+    PSAFQIRYGGYKGVVAVDP S +KLSLR+SM
Sbjct: 527  TYIFSDGIGKISSDFARRVATKCGIRDGVPSAFQIRYGGYKGVVAVDPTSSMKLSLRKSM 586

Query: 244  SKYDSENTKLDVLAWSKFQPCFLNRQLVTLLSTLGVGDDVFEKKQSEVIVQLDAILKDPL 423
             KY S+NTKLDVL+WSK+QPCF+NRQ++TLLSTLGV D VFEKKQ E + QLD IL DPL
Sbjct: 587  LKYQSDNTKLDVLSWSKYQPCFMNRQIITLLSTLGVRDHVFEKKQREAVAQLDDILVDPL 646

Query: 424  RAQDALELMSPGENTNILNEMLMCGYKPDDEPFLSMMLQIFRASKLLELRTKTRI 588
            +AQDAL+LMSPGENTNIL EML CGYKPD+EPFLSMMLQ FR +KLL+LR K RI
Sbjct: 647  KAQDALDLMSPGENTNILKEMLKCGYKPDEEPFLSMMLQTFRLAKLLDLRVKARI 701


>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
          Length = 1115

 Score =  275 bits (702), Expect = 9e-72
 Identities = 147/198 (74%), Positives = 162/198 (81%), Gaps = 2/198 (1%)
 Frame = +1

Query: 1    SKETLSVRRXXXXXXXXXXVK--TYVFSDGIGKISAQFAQGVAIKCGLESSTPSAFQIRY 174
            SKETLSV R          V   +YVFSDGIGKISA FA+ VA KCGL+  TPSAFQIRY
Sbjct: 498  SKETLSVLRHEIEIIPDVKVHGTSYVFSDGIGKISADFARRVASKCGLQY-TPSAFQIRY 556

Query: 175  GGYKGVVAVDPKSFVKLSLRRSMSKYDSENTKLDVLAWSKFQPCFLNRQLVTLLSTLGVG 354
            GGYKGVVAVDP S +KLSLR+SMSKY+S+N KLDVL WSK+QPCFLNRQLVTLLSTLGV 
Sbjct: 557  GGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCFLNRQLVTLLSTLGVK 616

Query: 355  DDVFEKKQSEVIVQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPFLSMM 534
            DDV E+KQ E + QLDAIL D L+AQ+ALELMSPGENTNIL  ML CGY PD EPFLSMM
Sbjct: 617  DDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMM 676

Query: 535  LQIFRASKLLELRTKTRI 588
            LQ FRASKLL+LRT++RI
Sbjct: 677  LQTFRASKLLDLRTRSRI 694


>gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1065

 Score =  274 bits (701), Expect = 1e-71
 Identities = 145/198 (73%), Positives = 162/198 (81%), Gaps = 2/198 (1%)
 Frame = +1

Query: 1    SKETLSVRRXXXXXXXXXXVK--TYVFSDGIGKISAQFAQGVAIKCGLESSTPSAFQIRY 174
            SKETLSV R          V   +YVFSDGIGKISA FA+ VA KCGL+  TPSAFQIRY
Sbjct: 497  SKETLSVLRHEIEVIPDVKVHGTSYVFSDGIGKISADFARRVASKCGLQY-TPSAFQIRY 555

Query: 175  GGYKGVVAVDPKSFVKLSLRRSMSKYDSENTKLDVLAWSKFQPCFLNRQLVTLLSTLGVG 354
            GGYKGVVAVDP S +KLSLR+SMSKY+S+N KLDVL WSK+QPC+LNRQL+TLLSTLGV 
Sbjct: 556  GGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLITLLSTLGVK 615

Query: 355  DDVFEKKQSEVIVQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPFLSMM 534
            DD+ E+KQ E + QLDAIL D L+AQ+ALELMSPGENTNIL  ML CGY PD EPFLSMM
Sbjct: 616  DDILEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMM 675

Query: 535  LQIFRASKLLELRTKTRI 588
            LQ FRASKLL+LRTK+RI
Sbjct: 676  LQTFRASKLLDLRTKSRI 693


>gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1021

 Score =  274 bits (701), Expect = 1e-71
 Identities = 145/198 (73%), Positives = 162/198 (81%), Gaps = 2/198 (1%)
 Frame = +1

Query: 1   SKETLSVRRXXXXXXXXXXVK--TYVFSDGIGKISAQFAQGVAIKCGLESSTPSAFQIRY 174
           SKETLSV R          V   +YVFSDGIGKISA FA+ VA KCGL+  TPSAFQIRY
Sbjct: 346 SKETLSVLRHEIEVIPDVKVHGTSYVFSDGIGKISADFARRVASKCGLQY-TPSAFQIRY 404

Query: 175 GGYKGVVAVDPKSFVKLSLRRSMSKYDSENTKLDVLAWSKFQPCFLNRQLVTLLSTLGVG 354
           GGYKGVVAVDP S +KL+LR+SMSKY+S+N KLDVL WSK+QPCFLNRQL+TLLSTLGV 
Sbjct: 405 GGYKGVVAVDPYSSMKLTLRKSMSKYESDNNKLDVLGWSKYQPCFLNRQLITLLSTLGVR 464

Query: 355 DDVFEKKQSEVIVQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPFLSMM 534
           DD+ E+KQ E + QLDAIL D L+AQ+ALELMSPGENTNIL  ML CGY PD EPFLSMM
Sbjct: 465 DDILEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMM 524

Query: 535 LQIFRASKLLELRTKTRI 588
           LQ FRASKLL+LRTK+RI
Sbjct: 525 LQTFRASKLLDLRTKSRI 542


>gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  274 bits (701), Expect = 1e-71
 Identities = 146/198 (73%), Positives = 162/198 (81%), Gaps = 2/198 (1%)
 Frame = +1

Query: 1   SKETLSVRRXXXXXXXXXXVK--TYVFSDGIGKISAQFAQGVAIKCGLESSTPSAFQIRY 174
           SKETLSV R          V   +YVFSDGIGKISA FA+ VA KCGL+  TPSAFQIRY
Sbjct: 346 SKETLSVLRHEIEVIPDVKVHGTSYVFSDGIGKISADFARRVASKCGLQY-TPSAFQIRY 404

Query: 175 GGYKGVVAVDPKSFVKLSLRRSMSKYDSENTKLDVLAWSKFQPCFLNRQLVTLLSTLGVG 354
           GGYKGVVAVDP S +KLSLR+SMSKY+S+N KLDVL WSK+QPC+LNRQL+TLLSTLGV 
Sbjct: 405 GGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCYLNRQLITLLSTLGVK 464

Query: 355 DDVFEKKQSEVIVQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPFLSMM 534
           DDV E+KQ E + QLDAIL D L+AQ+ALELMSPGENTNIL  ML CGY PD EPFLSMM
Sbjct: 465 DDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMM 524

Query: 535 LQIFRASKLLELRTKTRI 588
           LQ FRASKLL+LRTK+RI
Sbjct: 525 LQTFRASKLLDLRTKSRI 542


>gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score =  274 bits (700), Expect = 2e-71
 Identities = 142/200 (71%), Positives = 163/200 (81%), Gaps = 4/200 (2%)
 Frame = +1

Query: 1    SKETLSVRRXXXXXXXXXXVKT----YVFSDGIGKISAQFAQGVAIKCGLESSTPSAFQI 168
            S+ETL+VR           + +    YVFSDGIGKISA+FA+ VA KCGL   +PSAFQI
Sbjct: 506  SRETLNVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQI 565

Query: 169  RYGGYKGVVAVDPKSFVKLSLRRSMSKYDSENTKLDVLAWSKFQPCFLNRQLVTLLSTLG 348
            RYGGYKGVVAVDP S  KLSLR+SMSK++SENTKLDVLAWSK+QPC++NRQL+TLLSTLG
Sbjct: 566  RYGGYKGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLG 625

Query: 349  VGDDVFEKKQSEVIVQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPFLS 528
            V D VFEKKQ EV+ +LDAIL  PL A +AL LM+PGENTNIL  +++CGYKPD EPFLS
Sbjct: 626  VTDSVFEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLS 685

Query: 529  MMLQIFRASKLLELRTKTRI 588
            MMLQ FRASKLLELRTKTRI
Sbjct: 686  MMLQNFRASKLLELRTKTRI 705


>ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
            gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName:
            Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
            AltName: Full=RNA-directed RNA polymerase 1
            gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
            [Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1|
            putative RNA-directed RNA polymerase [Arabidopsis
            thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA
            polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score =  274 bits (700), Expect = 2e-71
 Identities = 142/200 (71%), Positives = 163/200 (81%), Gaps = 4/200 (2%)
 Frame = +1

Query: 1    SKETLSVRRXXXXXXXXXXVKT----YVFSDGIGKISAQFAQGVAIKCGLESSTPSAFQI 168
            S+ETL+VR           + +    YVFSDGIGKISA+FA+ VA KCGL   +PSAFQI
Sbjct: 506  SRETLNVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQI 565

Query: 169  RYGGYKGVVAVDPKSFVKLSLRRSMSKYDSENTKLDVLAWSKFQPCFLNRQLVTLLSTLG 348
            RYGGYKGVVAVDP S  KLSLR+SMSK++SENTKLDVLAWSK+QPC++NRQL+TLLSTLG
Sbjct: 566  RYGGYKGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLG 625

Query: 349  VGDDVFEKKQSEVIVQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPFLS 528
            V D VFEKKQ EV+ +LDAIL  PL A +AL LM+PGENTNIL  +++CGYKPD EPFLS
Sbjct: 626  VTDSVFEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLS 685

Query: 529  MMLQIFRASKLLELRTKTRI 588
            MMLQ FRASKLLELRTKTRI
Sbjct: 686  MMLQNFRASKLLELRTKTRI 705


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  274 bits (700), Expect = 2e-71
 Identities = 143/200 (71%), Positives = 160/200 (80%), Gaps = 4/200 (2%)
 Frame = +1

Query: 1    SKETLSVRRXXXXXXXXXXVKT----YVFSDGIGKISAQFAQGVAIKCGLESSTPSAFQI 168
            S ETLSV +          +      YVF DGIGKISA+FA+ VA KC L+  TPSAFQI
Sbjct: 502  STETLSVSKDEINLIPDIEIMKDGIKYVFPDGIGKISAEFAKKVAAKCRLKGCTPSAFQI 561

Query: 169  RYGGYKGVVAVDPKSFVKLSLRRSMSKYDSENTKLDVLAWSKFQPCFLNRQLVTLLSTLG 348
            R GG+KGVVA+DP S  KLSLR+SM KY+SENTKLDVLAWSK+QPCFLNRQL+TLLSTLG
Sbjct: 562  RIGGFKGVVAIDPTSSWKLSLRKSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLG 621

Query: 349  VGDDVFEKKQSEVIVQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPFLS 528
            V D  FEKKQ EV+ QL+A+L DPL AQ+ALELMSPGENTNIL EML+CGYKPD EPFLS
Sbjct: 622  VPDYAFEKKQREVVDQLNALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLS 681

Query: 529  MMLQIFRASKLLELRTKTRI 588
            MML+ FRASKLLELRTK RI
Sbjct: 682  MMLETFRASKLLELRTKARI 701