BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia22_contig00011095
         (1593 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     351   e-166
emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera]   294   e-134
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           280   e-132
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   279   e-132
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   279   e-132
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   276   e-131
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   274   e-128
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     273   e-128
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     285   e-128
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   274   e-127
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]     274   e-126
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              262   e-126
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              262   e-125
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              261   e-125
gb|AFB73912.1| polyprotein [Citrus sinensis]                          264   e-125
gb|AFB73911.1| polyprotein [Citrus sinensis]                          260   e-125
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              260   e-124
dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]           273   e-122
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc...   275   e-121
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  260   e-121

>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  351 bits (901), Expect(3) = e-166
 Identities = 168/257 (65%), Positives = 210/257 (81%), Gaps = 2/257 (0%)
 Frame = +3

Query: 735  CVYTRVFQNGMQILLLLYVDDMLIACQDMSTILELKTLL--RNST*RI*LCKKIIGMKIR 908
            CVY  VF++G  ILLLLYVDDMLIAC+DM  I +LK  L        +   +KI+G++IR
Sbjct: 963  CVYYHVFEDGKVILLLLYVDDMLIACRDMLQIQKLKKKLGAEFDMKDLGAAQKILGIEIR 1022

Query: 909  RDRNVGRIWLSQVKYIQKVLEKFNMVEAKSVSTPLASHFSLSAKQSPFTDAQVEEMETIP 1088
            RDRN G+IWLSQ KYI K+LE+FNM EAK VS PLA+HF LSA+Q P    +++ M+ +P
Sbjct: 1023 RDRNAGKIWLSQEKYIMKILERFNMAEAKVVSIPLAAHFRLSAEQRPSDQKEIDMMKNVP 1082

Query: 1089 YASAIGCLMYAMVCTRPNIAQAINVVSKYMANPGKPHWEAVKWILRYLKGTKKLGILFER 1268
            YASA+GCLMYAM+CTRP++AQA++VVSKYM+NPGK HWEAVKWI +YLK T++LGI+FER
Sbjct: 1083 YASAVGCLMYAMICTRPDLAQAMSVVSKYMSNPGKRHWEAVKWIFKYLKNTRQLGIMFER 1142

Query: 1269 KQEGACISGFVDADYAGDLDKRRSTTGYVFTYGGGPISWRAMLQSVCALSTTEAKYMALA 1448
            +Q  AC++GFVD+D+AGDLD+RRST GYVFT GGGP+SW+A LQ+V ALSTTEA+YMAL 
Sbjct: 1143 RQGEACVAGFVDSDFAGDLDRRRSTAGYVFTCGGGPVSWKATLQAVTALSTTEAEYMALT 1202

Query: 1449 EASKEAVWLRGLASEFG 1499
            EASKEA+WL GLA + G
Sbjct: 1203 EASKEAIWLNGLAGQLG 1219



 Score =  252 bits (643), Expect(3) = e-166
 Identities = 120/161 (74%), Positives = 142/161 (88%)
 Frame = +2

Query: 179  ALSVSEGDPTTFYDTLESKDHEGWMNAMTEEMESLHKNSVWELVPKPKDRKLVGCKWVYR 358
            ALS+S+GDPTT+ D +ES +  GW+ AMTEEMESLHKNSVWELVPKPK+RKLVGCKWV+R
Sbjct: 774  ALSISQGDPTTYEDAIESVESAGWIGAMTEEMESLHKNSVWELVPKPKERKLVGCKWVFR 833

Query: 359  KKE*ALENEVPKFKARLVAKGYSQKEGIDYDEIFSPVVRHTSIILLLSMVA*QDMELEKL 538
            KKE   E++   +KARLVAKGYSQKEG+DYDEIFSPVV+HTSI LLLS+ A  DME+E++
Sbjct: 834  KKEGIHEDDAITYKARLVAKGYSQKEGVDYDEIFSPVVKHTSIRLLLSIAAQYDMEIEQM 893

Query: 539  NVKTAFLHGDLEEDIYVVQPQGFVKKGTKNLVCRLKKSLYG 661
            +VKTAFLHGDLEEDIY+ QP+GFV+ G +NLVCRLKKSLYG
Sbjct: 894  DVKTAFLHGDLEEDIYMSQPEGFVETGKENLVCRLKKSLYG 934



 Score = 31.6 bits (70), Expect(3) = e-166
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
 Frame = +1

Query: 661  VKQSSRQWYK----LLACIGHRRCEADHCV 738
            +KQS RQWYK     +  IG+ RC+ D CV
Sbjct: 935  LKQSPRQWYKPFDTYMLKIGYTRCQYDCCV 964


>emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera]
          Length = 595

 Score =  294 bits (752), Expect(3) = e-134
 Identities = 140/240 (58%), Positives = 184/240 (76%), Gaps = 2/240 (0%)
 Frame = +3

Query: 771  ILLLLYVDDMLIACQDMSTILELKTLLRNS--T*RI*LCKKIIGMKIRRDRNVGRIWLSQ 944
            I LLLYVDDMLIA + M  + +LK+LL        +   KKIIGM+I RDR   R+WLSQ
Sbjct: 355  IFLLLYVDDMLIAAKSMVEVNKLKSLLSKEFDMKELDAAKKIIGMEIHRDRASRRLWLSQ 414

Query: 945  VKYIQKVLEKFNMVEAKSVSTPLASHFSLSAKQSPFTDAQVEEMETIPYASAIGCLMYAM 1124
              Y+++V E+FNM +AK VSTPLA+HF LS  Q P T+ +V++M  +PYASA+GC MYAM
Sbjct: 415  YSYVKRVFERFNMDDAKPVSTPLANHFRLSTNQCPKTBDEVKDMSKVPYASAVGCFMYAM 474

Query: 1125 VCTRPNIAQAINVVSKYMANPGKPHWEAVKWILRYLKGTKKLGILFERKQEGACISGFVD 1304
            VC RP++A  ++VVSK+++NPG+ HW+A+KWI RYL+G    GI+F ++Q    I G+VD
Sbjct: 475  VCIRPDLAHTVSVVSKFLSNPGRMHWDAIKWIFRYLRGXTYYGIMFSKQQSDPSIRGYVD 534

Query: 1305 ADYAGDLDKRRSTTGYVFTYGGGPISWRAMLQSVCALSTTEAKYMALAEASKEAVWLRGL 1484
            ADYAGDLD RRSTTGYVFT GGGPI W++M+QS+ AL TTE++YMA+AEA+KE++WL GL
Sbjct: 535  ADYAGDLDDRRSTTGYVFTLGGGPICWKSMVQSLVALFTTESEYMAIAEATKESLWLIGL 594



 Score =  205 bits (521), Expect(3) = e-134
 Identities = 93/162 (57%), Positives = 127/162 (78%)
 Frame = +2

Query: 176 YALSVSEGDPTTFYDTLESKDHEGWMNAMTEEMESLHKNSVWELVPKPKDRKLVGCKWVY 355
           YAL  S  DP TF + + +++   WM AM EE++ LHKN  W+LV  P+ ++ +GCKWVY
Sbjct: 152 YALITSSKDPITFQEAIHNQEKSRWMGAMVEEIQFLHKNQTWDLVEPPEGKRAIGCKWVY 211

Query: 356 RKKE*ALENEVPKFKARLVAKGYSQKEGIDYDEIFSPVVRHTSIILLLSMVA*QDMELEK 535
           +KKE   + E  KFKARLVAKGYSQ++G+DYDEIFSP+VRHTSI  +L +VA  DM+LE+
Sbjct: 212 KKKEAISKKEGEKFKARLVAKGYSQRKGVDYDEIFSPMVRHTSIRTVLGLVAHFDMQLEQ 271

Query: 536 LNVKTAFLHGDLEEDIYVVQPQGFVKKGTKNLVCRLKKSLYG 661
           ++V+T FLHGDLEE +Y+VQP+GF++ G ++LVC+L+KSLYG
Sbjct: 272 MDVETTFLHGDLEELVYMVQPEGFIQPGQEHLVCKLRKSLYG 313



 Score = 30.0 bits (66), Expect(3) = e-134
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
 Frame = +1

Query: 661 VKQSSRQWYK----LLACIGHRRCEAD 729
           +KQS RQWYK     +  IG++RCE D
Sbjct: 314 LKQSPRQWYKCFDSYIIRIGYKRCEYD 340


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  280 bits (716), Expect(3) = e-132
 Identities = 145/255 (56%), Positives = 187/255 (73%), Gaps = 2/255 (0%)
 Frame = +3

Query: 735  CVYTRVFQNGMQILLLLYVDDMLIACQDMSTILELKTLLRNST*RI*L--CKKIIGMKIR 908
            CVY +   NG  I LLLYVDDMLIA +    I +LK LL +      L   KKI+GM+I 
Sbjct: 1000 CVYIK-HVNGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEIS 1058

Query: 909  RDRNVGRIWLSQVKYIQKVLEKFNMVEAKSVSTPLASHFSLSAKQSPFTDAQVEEMETIP 1088
            RDR  G ++LSQ  YI+KVL++FNM  AK+VSTP+A HF LSA Q P TDA++E M  +P
Sbjct: 1059 RDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVP 1118

Query: 1089 YASAIGCLMYAMVCTRPNIAQAINVVSKYMANPGKPHWEAVKWILRYLKGTKKLGILFER 1268
            Y+SA+G LMYAMVC+RP+++ A+++VS+YM+NPGK HW A++WI RYL+GT    + F R
Sbjct: 1119 YSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRALQWIFRYLRGTTYSCLKFGR 1178

Query: 1269 KQEGACISGFVDADYAGDLDKRRSTTGYVFTYGGGPISWRAMLQSVCALSTTEAKYMALA 1448
              +G  + G+VD+DYA DLD+RRS TGYVFT G   +SWRA LQSV ALSTTEA+YMA+ 
Sbjct: 1179 TDKG--LIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAIC 1236

Query: 1449 EASKEAVWLRGLASE 1493
            EA KE +WL+GL +E
Sbjct: 1237 EACKELIWLKGLYAE 1251



 Score =  199 bits (505), Expect(3) = e-132
 Identities = 93/169 (55%), Positives = 129/169 (76%), Gaps = 5/169 (2%)
 Frame = +2

Query: 170  AYYALSVSEG-----DPTTFYDTLESKDHEGWMNAMTEEMESLHKNSVWELVPKPKDRKL 334
            +YYALS +E      +P T+ + +   D E W++AM EEM+SL KNS WE+VP PK +K 
Sbjct: 803  SYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKT 862

Query: 335  VGCKWVYRKKE*ALENEVPKFKARLVAKGYSQKEGIDYDEIFSPVVRHTSIILLLSMVA* 514
            + CKW++++KE    +E PK+KARLVA+GYSQ  G+DY+++FSPVV+H+SI   LS+VA 
Sbjct: 863  ISCKWIFKRKEALSLSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVAS 922

Query: 515  QDMELEKLNVKTAFLHGDLEEDIYVVQPQGFVKKGTKNLVCRLKKSLYG 661
             D+ELE+L+VKTAFLHG+LEEDIY+ QP+GF+  G +  VC+LK+SLYG
Sbjct: 923  HDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYG 971



 Score = 44.7 bits (104), Expect(3) = e-132
 Identities = 18/27 (66%), Positives = 23/27 (85%)
 Frame = +1

Query: 1513 VMIRCDSQSAIYLAKNQVFHGRTKHIE 1593
            + + CDSQSAIYL K+Q+FH RTKHI+
Sbjct: 1259 ISLHCDSQSAIYLTKDQMFHERTKHID 1285


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  279 bits (713), Expect(3) = e-132
 Identities = 145/255 (56%), Positives = 186/255 (72%), Gaps = 2/255 (0%)
 Frame = +3

Query: 735  CVYTRVFQNGMQILLLLYVDDMLIACQDMSTILELKTLLRNST*RI*L--CKKIIGMKIR 908
            CVY +   NG  I LLLYVDDMLIA +    I +LK LL +      L   KKI+GM+I 
Sbjct: 998  CVYIK-HVNGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEIS 1056

Query: 909  RDRNVGRIWLSQVKYIQKVLEKFNMVEAKSVSTPLASHFSLSAKQSPFTDAQVEEMETIP 1088
            RDR  G ++LSQ  YI+KVL++FNM  AK+VSTP+A HF LSA Q P  DA++E M  +P
Sbjct: 1057 RDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVP 1116

Query: 1089 YASAIGCLMYAMVCTRPNIAQAINVVSKYMANPGKPHWEAVKWILRYLKGTKKLGILFER 1268
            Y+SA+G LMYAMVC+RP+++ A+++VS+YM+NPGK HW AV+WI RYL+GT    + F R
Sbjct: 1117 YSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFGR 1176

Query: 1269 KQEGACISGFVDADYAGDLDKRRSTTGYVFTYGGGPISWRAMLQSVCALSTTEAKYMALA 1448
              +G  + G+VD+DYA DLD+RRS TGYVFT G   +SWRA LQSV ALSTTEA+YMA+ 
Sbjct: 1177 TDKG--LIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAIC 1234

Query: 1449 EASKEAVWLRGLASE 1493
            EA KE +WL+GL +E
Sbjct: 1235 EACKELIWLKGLYAE 1249



 Score =  200 bits (508), Expect(3) = e-132
 Identities = 93/169 (55%), Positives = 129/169 (76%), Gaps = 5/169 (2%)
 Frame = +2

Query: 170  AYYALSVSEG-----DPTTFYDTLESKDHEGWMNAMTEEMESLHKNSVWELVPKPKDRKL 334
            +YYALS +E      +P T+ + +   D E W++AM EEM+SL KNS WE+VP PK +K 
Sbjct: 801  SYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKT 860

Query: 335  VGCKWVYRKKE*ALENEVPKFKARLVAKGYSQKEGIDYDEIFSPVVRHTSIILLLSMVA* 514
            + CKW++++KE    +E PK+KARLVA+GYSQ  G+DY+++FSPVV+H+SI   LS+VA 
Sbjct: 861  ISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVAS 920

Query: 515  QDMELEKLNVKTAFLHGDLEEDIYVVQPQGFVKKGTKNLVCRLKKSLYG 661
             D+ELE+L+VKTAFLHG+LEEDIY+ QP+GF+  G +  VC+LK+SLYG
Sbjct: 921  HDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYG 969



 Score = 44.7 bits (104), Expect(3) = e-132
 Identities = 18/27 (66%), Positives = 23/27 (85%)
 Frame = +1

Query: 1513 VMIRCDSQSAIYLAKNQVFHGRTKHIE 1593
            + + CDSQSAIYL K+Q+FH RTKHI+
Sbjct: 1257 ISLHCDSQSAIYLTKDQMFHERTKHID 1283


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  279 bits (713), Expect(3) = e-132
 Identities = 145/255 (56%), Positives = 186/255 (72%), Gaps = 2/255 (0%)
 Frame = +3

Query: 735  CVYTRVFQNGMQILLLLYVDDMLIACQDMSTILELKTLLRNST*RI*L--CKKIIGMKIR 908
            CVY +   NG  I LLLYVDDMLIA +    I +LK LL +      L   KKI+GM+I 
Sbjct: 998  CVYIK-HVNGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEIS 1056

Query: 909  RDRNVGRIWLSQVKYIQKVLEKFNMVEAKSVSTPLASHFSLSAKQSPFTDAQVEEMETIP 1088
            RDR  G ++LSQ  YI+KVL++FNM  AK+VSTP+A HF LSA Q P  DA++E M  +P
Sbjct: 1057 RDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVP 1116

Query: 1089 YASAIGCLMYAMVCTRPNIAQAINVVSKYMANPGKPHWEAVKWILRYLKGTKKLGILFER 1268
            Y+SA+G LMYAMVC+RP+++ A+++VS+YM+NPGK HW AV+WI RYL+GT    + F R
Sbjct: 1117 YSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFGR 1176

Query: 1269 KQEGACISGFVDADYAGDLDKRRSTTGYVFTYGGGPISWRAMLQSVCALSTTEAKYMALA 1448
              +G  + G+VD+DYA DLD+RRS TGYVFT G   +SWRA LQSV ALSTTEA+YMA+ 
Sbjct: 1177 TDKG--LIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAIC 1234

Query: 1449 EASKEAVWLRGLASE 1493
            EA KE +WL+GL +E
Sbjct: 1235 EACKELIWLKGLYAE 1249



 Score =  200 bits (508), Expect(3) = e-132
 Identities = 93/169 (55%), Positives = 129/169 (76%), Gaps = 5/169 (2%)
 Frame = +2

Query: 170  AYYALSVSEG-----DPTTFYDTLESKDHEGWMNAMTEEMESLHKNSVWELVPKPKDRKL 334
            +YYALS +E      +P T+ + +   D E W++AM EEM+SL KNS WE+VP PK +K 
Sbjct: 801  SYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKT 860

Query: 335  VGCKWVYRKKE*ALENEVPKFKARLVAKGYSQKEGIDYDEIFSPVVRHTSIILLLSMVA* 514
            + CKW++++KE    +E PK+KARLVA+GYSQ  G+DY+++FSPVV+H+SI   LS+VA 
Sbjct: 861  ISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVAS 920

Query: 515  QDMELEKLNVKTAFLHGDLEEDIYVVQPQGFVKKGTKNLVCRLKKSLYG 661
             D+ELE+L+VKTAFLHG+LEEDIY+ QP+GF+  G +  VC+LK+SLYG
Sbjct: 921  HDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYG 969



 Score = 43.5 bits (101), Expect(3) = e-132
 Identities = 17/27 (62%), Positives = 23/27 (85%)
 Frame = +1

Query: 1513 VMIRCDSQSAIYLAKNQVFHGRTKHIE 1593
            + + CDS+SAIYL K+Q+FH RTKHI+
Sbjct: 1257 ISLHCDSESAIYLTKDQMFHERTKHID 1283


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  276 bits (706), Expect(3) = e-131
 Identities = 144/255 (56%), Positives = 185/255 (72%), Gaps = 2/255 (0%)
 Frame = +3

Query: 735  CVYTRVFQNGMQILLLLYVDDMLIACQDMSTILELKTLLRNST*RI*L--CKKIIGMKIR 908
            CVY +   NG  I LLLYVDDMLIA +    I +LK LL +      L   KKI+ M+I 
Sbjct: 998  CVYIK-HVNGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILVMEIS 1056

Query: 909  RDRNVGRIWLSQVKYIQKVLEKFNMVEAKSVSTPLASHFSLSAKQSPFTDAQVEEMETIP 1088
            RDR  G ++LSQ  YI+KVL++FNM  AK+VSTP+A HF LSA Q P TDA++E M  +P
Sbjct: 1057 RDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVP 1116

Query: 1089 YASAIGCLMYAMVCTRPNIAQAINVVSKYMANPGKPHWEAVKWILRYLKGTKKLGILFER 1268
            Y+SA+G LMYAMVC+RP+++ A+++VS+YM+NPGK HW  V+WI RYL+GT    + F R
Sbjct: 1117 YSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRVVQWIFRYLRGTTYSCLKFGR 1176

Query: 1269 KQEGACISGFVDADYAGDLDKRRSTTGYVFTYGGGPISWRAMLQSVCALSTTEAKYMALA 1448
              +G  + G+VD+DYA DLD+RRS TGYVFT G   +SWRA LQSV ALSTTEA+YMA+ 
Sbjct: 1177 TDKG--LIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAIC 1234

Query: 1449 EASKEAVWLRGLASE 1493
            EA KE +WL+GL +E
Sbjct: 1235 EACKELIWLKGLYAE 1249



 Score =  200 bits (508), Expect(3) = e-131
 Identities = 93/169 (55%), Positives = 129/169 (76%), Gaps = 5/169 (2%)
 Frame = +2

Query: 170  AYYALSVSEG-----DPTTFYDTLESKDHEGWMNAMTEEMESLHKNSVWELVPKPKDRKL 334
            +YYALS +E      +P T+ + +   D E W++AM EEM+SL KNS WE+VP PK +K 
Sbjct: 801  SYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKT 860

Query: 335  VGCKWVYRKKE*ALENEVPKFKARLVAKGYSQKEGIDYDEIFSPVVRHTSIILLLSMVA* 514
            + CKW++++KE    +E PK+KARLVA+GYSQ  G+DY+++FSPVV+H+SI   LS+VA 
Sbjct: 861  ISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVAS 920

Query: 515  QDMELEKLNVKTAFLHGDLEEDIYVVQPQGFVKKGTKNLVCRLKKSLYG 661
             D+ELE+L+VKTAFLHG+LEEDIY+ QP+GF+  G +  VC+LK+SLYG
Sbjct: 921  HDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYG 969



 Score = 44.7 bits (104), Expect(3) = e-131
 Identities = 18/27 (66%), Positives = 23/27 (85%)
 Frame = +1

Query: 1513 VMIRCDSQSAIYLAKNQVFHGRTKHIE 1593
            + + CDSQSAIYL K+Q+FH RTKHI+
Sbjct: 1257 ISLHCDSQSAIYLTKDQMFHERTKHID 1283


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  274 bits (701), Expect(3) = e-128
 Identities = 141/252 (55%), Positives = 187/252 (74%), Gaps = 2/252 (0%)
 Frame = +3

Query: 735  CVYTRVFQNGMQILLLLYVDDMLIACQDMSTILELKTLLRNST*RI*L--CKKIIGMKIR 908
            CVY +V  +G  I LLLYVDDMLIA +D S I +LK  L +      L   KKI+GM+I 
Sbjct: 1204 CVYLKVV-DGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEIT 1262

Query: 909  RDRNVGRIWLSQVKYIQKVLEKFNMVEAKSVSTPLASHFSLSAKQSPFTDAQVEEMETIP 1088
            R R+  +++LSQ  YI+KVL +FNM +AK VSTPLA+HF LS+   P +D  +E M  +P
Sbjct: 1263 RKRHSFKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVP 1322

Query: 1089 YASAIGCLMYAMVCTRPNIAQAINVVSKYMANPGKPHWEAVKWILRYLKGTKKLGILFER 1268
            Y+SA+G LMYAMVC+RP+++ A++VVS+YMANPGK HW+AV+WI RYL+GT    + F R
Sbjct: 1323 YSSAVGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGR 1382

Query: 1269 KQEGACISGFVDADYAGDLDKRRSTTGYVFTYGGGPISWRAMLQSVCALSTTEAKYMALA 1448
             ++G  + G+VD+D+AGDLD+ RS  GYVFT GG  +SW+A LQ+  ALSTTEA+YMA++
Sbjct: 1383 SRDG--LVGYVDSDFAGDLDRGRSLAGYVFTIGGCAVSWKASLQATVALSTTEAEYMAIS 1440

Query: 1449 EASKEAVWLRGL 1484
            EA KEA+WLRGL
Sbjct: 1441 EACKEAIWLRGL 1452



 Score =  195 bits (496), Expect(3) = e-128
 Identities = 104/204 (50%), Positives = 144/204 (70%), Gaps = 5/204 (2%)
 Frame = +2

Query: 65   QVVKRSLLFRKQPQKFLLPS*PWRLQTSWRIVTREAYYALSVSE-----GDPTTFYDTLE 229
            Q  KRS+  + +P++ + P  P R      IV     YALSV+E      +P+T+ + + 
Sbjct: 979  QSPKRSIA-KDRPKRNIKP--PQRYIEEANIVA----YALSVAEEIEGNAEPSTYSEAIV 1031

Query: 230  SKDHEGWMNAMTEEMESLHKNSVWELVPKPKDRKLVGCKWVYRKKE*ALENEVPKFKARL 409
            S D   W+ AM +EMESL KN  WELV  PK++K + CKW++++KE    ++  ++KARL
Sbjct: 1032 SDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSDEARYKARL 1091

Query: 410  VAKGYSQKEGIDYDEIFSPVVRHTSIILLLSMVA*QDMELEKLNVKTAFLHGDLEEDIYV 589
            +AKGYSQ  GID++++FSPVV+H+SI  LLS+VA  D ELE+++VKTAFLHG+LEEDIY+
Sbjct: 1092 IAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYM 1151

Query: 590  VQPQGFVKKGTKNLVCRLKKSLYG 661
             QP+GFV  G +NLVCRLKKSLYG
Sbjct: 1152 EQPKGFVVPGKENLVCRLKKSLYG 1175



 Score = 41.2 bits (95), Expect(3) = e-128
 Identities = 20/39 (51%), Positives = 27/39 (69%)
 Frame = +1

Query: 1477 GVWLLSLARHGPVMIRCDSQSAIYLAKNQVFHGRTKHIE 1593
            G++ +  A    + I CDSQSAI L K+Q+FH RTKHI+
Sbjct: 1451 GLYTVLCAVTSCINIFCDSQSAICLTKDQMFHERTKHID 1489


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  273 bits (698), Expect(4) = e-128
 Identities = 141/255 (55%), Positives = 188/255 (73%), Gaps = 2/255 (0%)
 Frame = +3

Query: 735  CVYTRVFQNGMQILLLLYVDDMLIACQDMSTILELKTLLRNST*RI*L--CKKIIGMKIR 908
            CVY +V  +G  I LLLYVDDMLIA +D S I +LK  L +      L   KKI+GM+I 
Sbjct: 906  CVYLKVV-DGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEIT 964

Query: 909  RDRNVGRIWLSQVKYIQKVLEKFNMVEAKSVSTPLASHFSLSAKQSPFTDAQVEEMETIP 1088
            R+R+ G+++LSQ  YI+KVL +FNM +AK VST LA+HF LS+   P +   +E M  +P
Sbjct: 965  RERHSGKLYLSQKCYIEKVLHRFNMHDAKLVSTLLAAHFRLSSDLCPQSAYDIEYMSRVP 1024

Query: 1089 YASAIGCLMYAMVCTRPNIAQAINVVSKYMANPGKPHWEAVKWILRYLKGTKKLGILFER 1268
            Y+SA+  LMYAMVC+RP+++ A++VVS+YMANPGK HW+AV+WI RYL+GT    + F R
Sbjct: 1025 YSSAVSSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGR 1084

Query: 1269 KQEGACISGFVDADYAGDLDKRRSTTGYVFTYGGGPISWRAMLQSVCALSTTEAKYMALA 1448
              +G  + G+VD+D+AGDLD+RRS TGYVFT GG  +SW+A LQ+  ALSTTEA+YMA++
Sbjct: 1085 SSDG--LVGYVDSDFAGDLDRRRSLTGYVFTVGGCAVSWKASLQATVALSTTEAEYMAIS 1142

Query: 1449 EASKEAVWLRGLASE 1493
            EA KE +WLRGL +E
Sbjct: 1143 EACKEVIWLRGLYTE 1157



 Score =  194 bits (492), Expect(4) = e-128
 Identities = 102/202 (50%), Positives = 140/202 (69%), Gaps = 8/202 (3%)
 Frame = +2

Query: 80   SLLFRKQPQKFLLPS*PWRLQTSWRIVTREAY---YALSVSE-----GDPTTFYDTLESK 235
            S + ++ P++ +    P R     R    EA    YALSV+E      +P+T+ D + S 
Sbjct: 676  SSIVQQSPKRSIAKDRPKRNTKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSDAIVSD 735

Query: 236  DHEGWMNAMTEEMESLHKNSVWELVPKPKDRKLVGCKWVYRKKE*ALENEVPKFKARLVA 415
            D   W+ AM +EMESL KN  WEL   PK++K + CKW++++KE    ++  ++KARLVA
Sbjct: 736  DCNRWITAMHDEMESLEKNHSWELEKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVA 795

Query: 416  KGYSQKEGIDYDEIFSPVVRHTSIILLLSMVA*QDMELEKLNVKTAFLHGDLEEDIYVVQ 595
            KGYSQ  GID++++FSPVV+H+SI  LLS+VA  D ELE+++VKTAFLHG+LEEDIY+ Q
Sbjct: 796  KGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQ 855

Query: 596  PQGFVKKGTKNLVCRLKKSLYG 661
            P+GFV  G +NLVCRLKKSLYG
Sbjct: 856  PEGFVVPGKENLVCRLKKSLYG 877



 Score = 40.4 bits (93), Expect(4) = e-128
 Identities = 18/27 (66%), Positives = 22/27 (81%)
 Frame = +1

Query: 1513 VMIRCDSQSAIYLAKNQVFHGRTKHIE 1593
            + I CDSQSAI L K+Q+FH RTKHI+
Sbjct: 1165 INIFCDSQSAICLTKDQMFHERTKHID 1191



 Score = 24.3 bits (51), Expect(4) = e-128
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
 Frame = +1

Query: 661 VKQSSRQWYK----LLACIGHRRCEADHCV 738
           +KQS RQWYK     +     RR   D CV
Sbjct: 878 LKQSPRQWYKRFDSFMLSQKFRRSNYDSCV 907


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  285 bits (728), Expect(4) = e-128
 Identities = 145/255 (56%), Positives = 192/255 (75%), Gaps = 2/255 (0%)
 Frame = +3

Query: 735  CVYTRVFQNGMQILLLLYVDDMLIACQDMSTILELKTLLRNST*RI*L--CKKIIGMKIR 908
            CVY +V  +G  I LLLYVDDMLIA +D S I +LK  L +      L   KKI+GM+I 
Sbjct: 969  CVYLKVV-DGSVIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEIT 1027

Query: 909  RDRNVGRIWLSQVKYIQKVLEKFNMVEAKSVSTPLASHFSLSAKQSPFTDAQVEEMETIP 1088
            R+R+ G+++LSQ  YI+KVL +FNM +AK VSTPLA+HF LS+   P +D  +E M  +P
Sbjct: 1028 RERHSGKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLCPLSDYDIEYMSRVP 1087

Query: 1089 YASAIGCLMYAMVCTRPNIAQAINVVSKYMANPGKPHWEAVKWILRYLKGTKKLGILFER 1268
            Y+SA+G LMYAMVC RP+++ A++VV++YMANPGK HW+AV+WI RYL+GT    + FER
Sbjct: 1088 YSSAVGSLMYAMVCCRPDLSHALSVVNRYMANPGKEHWKAVQWIFRYLRGTSSACLQFER 1147

Query: 1269 KQEGACISGFVDADYAGDLDKRRSTTGYVFTYGGGPISWRAMLQSVCALSTTEAKYMALA 1448
             ++G  + G+VD+D+AGDLD+RRS TGYVFT GG  +SW+A LQ+  ALSTTEA+YMA+ 
Sbjct: 1148 SRDG--LVGYVDSDFAGDLDRRRSITGYVFTIGGCAVSWKASLQATVALSTTEAEYMAIF 1205

Query: 1449 EASKEAVWLRGLASE 1493
            EA KEA+WLRGL +E
Sbjct: 1206 EACKEAIWLRGLYTE 1220



 Score =  196 bits (499), Expect(4) = e-128
 Identities = 105/204 (51%), Positives = 144/204 (70%), Gaps = 5/204 (2%)
 Frame = +2

Query: 65   QVVKRSLLFRKQPQKFLLPS*PWRLQTSWRIVTREAYYALSVSE-----GDPTTFYDTLE 229
            Q  KRS+  + +P++ + P  P R     +IV     YALSV+E      +P+T+ + + 
Sbjct: 744  QSPKRSIA-KDKPKRNIKP--PRRYIEEAKIVA----YALSVAEKIEGNAEPSTYSEAIV 796

Query: 230  SKDHEGWMNAMTEEMESLHKNSVWELVPKPKDRKLVGCKWVYRKKE*ALENEVPKFKARL 409
            S D   W+ AM +EMESL KN  WELV  PK++K + CKW++++KE    ++  ++KARL
Sbjct: 797  SDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARL 856

Query: 410  VAKGYSQKEGIDYDEIFSPVVRHTSIILLLSMVA*QDMELEKLNVKTAFLHGDLEEDIYV 589
            VAKGYSQ  GID++++FSPVV+H+SI  LL +VA  D ELE++NVKTAFLHG+LEEDIY+
Sbjct: 857  VAKGYSQIPGIDFNDVFSPVVKHSSIRTLLGIVAMHDYELEQMNVKTAFLHGELEEDIYM 916

Query: 590  VQPQGFVKKGTKNLVCRLKKSLYG 661
             QP+GFV  G +NLVCRLKKSLYG
Sbjct: 917  EQPEGFVVPGKENLVCRLKKSLYG 940



 Score = 25.8 bits (55), Expect(4) = e-128
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 1513 VMIRCDSQSAIYLAKN 1560
            + I CDSQSAIYL K+
Sbjct: 1228 INIFCDSQSAIYLTKD 1243



 Score = 22.7 bits (47), Expect(4) = e-128
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +1

Query: 661 VKQSSRQWYK 690
           +KQS RQWYK
Sbjct: 941 LKQSPRQWYK 950


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  274 bits (700), Expect(4) = e-127
 Identities = 145/255 (56%), Positives = 184/255 (72%), Gaps = 2/255 (0%)
 Frame = +3

Query: 735  CVYTRVFQNGMQILLLLYVDDMLIACQDMSTILELKTLLRNST*RI*L--CKKIIGMKIR 908
            CVY + F NG  I LLLYVDDMLIA +    I  LK  L +      L   KKI+GM+I 
Sbjct: 987  CVYIK-FVNGSPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEIT 1045

Query: 909  RDRNVGRIWLSQVKYIQKVLEKFNMVEAKSVSTPLASHFSLSAKQSPFTDAQVEEMETIP 1088
            RDRN G ++LSQ  YI+KVL++FNM +AK VSTP+A HF LSA Q   TD  VE M  +P
Sbjct: 1046 RDRNSGLLFLSQQSYIKKVLQRFNMHDAKPVSTPIAPHFKLSALQCASTDEDVEYMSRVP 1105

Query: 1089 YASAIGCLMYAMVCTRPNIAQAINVVSKYMANPGKPHWEAVKWILRYLKGTKKLGILFER 1268
            Y+SA+G LMYAMVC+ P+++ A+++VS+YMANPGK HW+AV+WI RYL+GT    + F R
Sbjct: 1106 YSSAVGSLMYAMVCSWPDLSHAMSLVSRYMANPGKEHWKAVQWIFRYLRGTADACLKFGR 1165

Query: 1269 KQEGACISGFVDADYAGDLDKRRSTTGYVFTYGGGPISWRAMLQSVCALSTTEAKYMALA 1448
              +G  + G+VD+D+A DLDKRRS TGYVFT G   +SW+A LQ V A STTEA+YMA+A
Sbjct: 1166 IDKG--LVGYVDSDFAADLDKRRSLTGYVFTIGSCAVSWKATLQPVVAQSTTEAEYMAIA 1223

Query: 1449 EASKEAVWLRGLASE 1493
            EA KE+VWL+GL +E
Sbjct: 1224 EACKESVWLKGLFAE 1238



 Score =  185 bits (469), Expect(4) = e-127
 Identities = 87/168 (51%), Positives = 123/168 (73%), Gaps = 5/168 (2%)
 Frame = +2

Query: 173  YYALSVSEG-----DPTTFYDTLESKDHEGWMNAMTEEMESLHKNSVWELVPKPKDRKLV 337
            YYA S +E      +P T+ + + S D E W++A+ EEM+SL KN  WELV  PK +K V
Sbjct: 791  YYAFSYAEQVENTLEPATYTEAVVSGDREKWISAIQEEMQSLEKNGTWELVHLPKQKKPV 850

Query: 338  GCKWVYRKKE*ALENEVPKFKARLVAKGYSQKEGIDYDEIFSPVVRHTSIILLLSMVA*Q 517
             CKW++++KE    +E P+FK RLVAKG+SQ  G+DY+++FSPVV+H+SI    S+V   
Sbjct: 851  RCKWIFKRKEGLSPSEPPRFKVRLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVTMH 910

Query: 518  DMELEKLNVKTAFLHGDLEEDIYVVQPQGFVKKGTKNLVCRLKKSLYG 661
            D+ELE+L+VKT FLHG+LEE+IY+ QP+GF+  G ++ VC+LK+SLYG
Sbjct: 911  DLELEQLDVKTTFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYG 958



 Score = 39.7 bits (91), Expect(4) = e-127
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = +1

Query: 1525 CDSQSAIYLAKNQVFHGRTKHIE 1593
            CDSQSAI L K+Q+FH RTKHI+
Sbjct: 1250 CDSQSAICLTKDQMFHERTKHID 1272



 Score = 28.1 bits (61), Expect(4) = e-127
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
 Frame = +1

Query: 661  VKQSSRQWYK----LLACIGHRRCEADHCV 738
            +KQS RQWYK     +   G +R E D CV
Sbjct: 959  LKQSPRQWYKRFDSFMLSHGFKRSEFDSCV 988


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score =  274 bits (701), Expect(4) = e-126
 Identities = 140/255 (54%), Positives = 188/255 (73%), Gaps = 2/255 (0%)
 Frame = +3

Query: 735  CVYTRVFQNGMQILLLLYVDDMLIACQDMSTILELKTLLRNST*RI*L--CKKIIGMKIR 908
            CVY +V  +G  I LLLYVDDMLIA +D S I +LK  L +      L   KKI+GM+I 
Sbjct: 876  CVYLKVV-DGSSIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEIT 934

Query: 909  RDRNVGRIWLSQVKYIQKVLEKFNMVEAKSVSTPLASHFSLSAKQSPFTDAQVEEMETIP 1088
            R+R+ G+++LSQ  YI+KVL +FNM +AK VSTPLA+HF LS+   P +D  +E M  +P
Sbjct: 935  RERHSGKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVP 994

Query: 1089 YASAIGCLMYAMVCTRPNIAQAINVVSKYMANPGKPHWEAVKWILRYLKGTKKLGILFER 1268
            Y S +G LMYAMVC+R +++ A++VVS+YMANPGK HW+ V+WI +YL+GT    + F R
Sbjct: 995  YLSVVGSLMYAMVCSRLDLSHALSVVSRYMANPGKEHWKVVQWIFKYLRGTSSACLQFGR 1054

Query: 1269 KQEGACISGFVDADYAGDLDKRRSTTGYVFTYGGGPISWRAMLQSVCALSTTEAKYMALA 1448
             ++G  + G+VD+D+AGDLD+RRS TGYVFT GG  +SW+A LQ+  ALSTTE +YMA++
Sbjct: 1055 SRDG--LVGYVDSDFAGDLDRRRSLTGYVFTIGGCAVSWKASLQATVALSTTEVEYMAIS 1112

Query: 1449 EASKEAVWLRGLASE 1493
            EA KEA+WLRGL +E
Sbjct: 1113 EACKEAIWLRGLYTE 1127



 Score =  186 bits (471), Expect(4) = e-126
 Identities = 101/204 (49%), Positives = 142/204 (69%), Gaps = 5/204 (2%)
 Frame = +2

Query: 65   QVVKRSLLFRKQPQKFLLPS*PWRLQTSWRIVTREAYYALSVSE-----GDPTTFYDTLE 229
            Q  KRS+  + +P++ + P  P R      IV     YALSV+E      +P+T+ + + 
Sbjct: 651  QSPKRSIA-KDKPKRNIKP--PRRYIEEANIVA----YALSVAEEIEGNAEPSTYSEAIV 703

Query: 230  SKDHEGWMNAMTEEMESLHKNSVWELVPKPKDRKLVGCKWVYRKKE*ALENEVPKFKARL 409
            S     W+ AM +EMESL KN  WELV  PK++K + CKW++++K+    ++  ++KARL
Sbjct: 704  SDGCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKKGMSPSDEARYKARL 763

Query: 410  VAKGYSQKEGIDYDEIFSPVVRHTSIILLLSMVA*QDMELEKLNVKTAFLHGDLEEDIYV 589
            VAKGYSQ  GID++++FSPV++H+SI  LLS+VA  D ELE+++VKTAFLHG+LEEDIY+
Sbjct: 764  VAKGYSQIPGIDFNDVFSPVLKHSSIRTLLSIVAVHDYELEQMDVKTAFLHGELEEDIYM 823

Query: 590  VQPQGFVKKGTKNLVCRLKKSLYG 661
             QP+GFV  G +NLV RLKKSLYG
Sbjct: 824  EQPEGFVVPGKENLVYRLKKSLYG 847



 Score = 38.9 bits (89), Expect(4) = e-126
 Identities = 17/27 (62%), Positives = 21/27 (77%)
 Frame = +1

Query: 1513 VMIRCDSQSAIYLAKNQVFHGRTKHIE 1593
            + I CDSQSAI   K+Q+FH RTKHI+
Sbjct: 1135 INIFCDSQSAICFTKDQMFHERTKHID 1161



 Score = 23.9 bits (50), Expect(4) = e-126
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
 Frame = +1

Query: 661 VKQSSRQWYK----LLACIGHRRCEADHCV 738
           +KQS RQWYK     +     RR   D CV
Sbjct: 848 LKQSPRQWYKRFDSFMFSQKFRRSNYDSCV 877


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  262 bits (670), Expect(3) = e-126
 Identities = 133/257 (51%), Positives = 176/257 (68%), Gaps = 2/257 (0%)
 Frame = +3

Query: 735  CVYTRVFQNGMQILLLLYVDDMLIACQDMSTILELKTLLRNST*RI*L--CKKIIGMKIR 908
            C Y + F     I+LLLYVDDML+   +   + ELK  L        L    KI+GM+I 
Sbjct: 968  CTYYKRFDGNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIH 1027

Query: 909  RDRNVGRIWLSQVKYIQKVLEKFNMVEAKSVSTPLASHFSLSAKQSPFTDAQVEEMETIP 1088
            RDR   +IWLSQ  Y++KVL +FNM + K +STPL  +F LS+  SP  +A+  EM  +P
Sbjct: 1028 RDRKDRKIWLSQKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVP 1087

Query: 1089 YASAIGCLMYAMVCTRPNIAQAINVVSKYMANPGKPHWEAVKWILRYLKGTKKLGILFER 1268
            YASA+G LMYAM+CTRP+IAQA+ VVS++MA+PGK HW AVK I+RY+KGT  + + F  
Sbjct: 1088 YASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGG 1147

Query: 1269 KQEGACISGFVDADYAGDLDKRRSTTGYVFTYGGGPISWRAMLQSVCALSTTEAKYMALA 1448
             +    + G+VD+D+AGD DKR+STTGYVFT  GG +SW + LQ+V ALSTTEA+YMA  
Sbjct: 1148 SE--LTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAAT 1205

Query: 1449 EASKEAVWLRGLASEFG 1499
            +A KEA+W++ L  E G
Sbjct: 1206 QACKEAIWMQRLMEELG 1222



 Score =  198 bits (504), Expect(3) = e-126
 Identities = 97/175 (55%), Positives = 131/175 (74%), Gaps = 3/175 (1%)
 Frame = +2

Query: 146  SWR---IVTREAYYALSVSEGDPTTFYDTLESKDHEGWMNAMTEEMESLHKNSVWELVPK 316
            SW+   ++T    Y L   EG+P+TF++ L   D   WM AM EEME+LH+N  WELV  
Sbjct: 766  SWQSDYVMTSHDAYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELVEL 825

Query: 317  PKDRKLVGCKWVYRKKE*ALENEVPKFKARLVAKGYSQKEGIDYDEIFSPVVRHTSIILL 496
            PK RK +G KWVY+ K     ++V +++ARLV KGY+QKEGID++EIFSPVVR T+I ++
Sbjct: 826  PKGRKAIGNKWVYKIKRDG-NDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVV 884

Query: 497  LSMVA*QDMELEKLNVKTAFLHGDLEEDIYVVQPQGFVKKGTKNLVCRLKKSLYG 661
            L+M A  D+ LE+L+VKTAFLHG+LEE+IY++QP+GF ++G +NLVCRL KSLYG
Sbjct: 885  LAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYG 939



 Score = 40.4 bits (93), Expect(3) = e-126
 Identities = 15/26 (57%), Positives = 21/26 (80%)
 Frame = +1

Query: 1513 VMIRCDSQSAIYLAKNQVFHGRTKHI 1590
            + + CDSQSA+++A+N  FH RTKHI
Sbjct: 1228 ITVYCDSQSALHIARNPAFHSRTKHI 1253


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  262 bits (669), Expect(3) = e-125
 Identities = 133/257 (51%), Positives = 176/257 (68%), Gaps = 2/257 (0%)
 Frame = +3

Query: 735  CVYTRVFQNGMQILLLLYVDDMLIACQDMSTILELKTLLRNST*RI*L--CKKIIGMKIR 908
            C Y + F     I+LLLYVDDML+   +   + ELK  L        L    KI+GM+I 
Sbjct: 968  CTYYKRFDGNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIH 1027

Query: 909  RDRNVGRIWLSQVKYIQKVLEKFNMVEAKSVSTPLASHFSLSAKQSPFTDAQVEEMETIP 1088
            RDR   +IWLSQ  Y++KVL +FNM + K +STPL  +F LS+  SP  +A+  EM  +P
Sbjct: 1028 RDRKDMKIWLSQKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVP 1087

Query: 1089 YASAIGCLMYAMVCTRPNIAQAINVVSKYMANPGKPHWEAVKWILRYLKGTKKLGILFER 1268
            YASA+G LMYAM+CTRP+IAQA+ VVS++MA+PGK HW AVK I+RY+KGT  + + F  
Sbjct: 1088 YASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGG 1147

Query: 1269 KQEGACISGFVDADYAGDLDKRRSTTGYVFTYGGGPISWRAMLQSVCALSTTEAKYMALA 1448
             +    + G+VD+D+AGD DKR+STTGYVFT  GG +SW + LQ+V ALSTTEA+YMA  
Sbjct: 1148 SE--LTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAAT 1205

Query: 1449 EASKEAVWLRGLASEFG 1499
            +A KEA+W++ L  E G
Sbjct: 1206 QACKEAIWMQRLMEELG 1222



 Score =  198 bits (504), Expect(3) = e-125
 Identities = 97/175 (55%), Positives = 131/175 (74%), Gaps = 3/175 (1%)
 Frame = +2

Query: 146  SWR---IVTREAYYALSVSEGDPTTFYDTLESKDHEGWMNAMTEEMESLHKNSVWELVPK 316
            SW+   ++T    Y L   EG+P+TF++ L   D   WM AM EEME+LH+N  WELV  
Sbjct: 766  SWQSDYVMTSHDAYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELVEL 825

Query: 317  PKDRKLVGCKWVYRKKE*ALENEVPKFKARLVAKGYSQKEGIDYDEIFSPVVRHTSIILL 496
            PK RK +G KWVY+ K     ++V +++ARLV KGY+QKEGID++EIFSPVVR T+I ++
Sbjct: 826  PKGRKAIGNKWVYKIKRDG-NDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVV 884

Query: 497  LSMVA*QDMELEKLNVKTAFLHGDLEEDIYVVQPQGFVKKGTKNLVCRLKKSLYG 661
            L+M A  D+ LE+L+VKTAFLHG+LEE+IY++QP+GF ++G +NLVCRL KSLYG
Sbjct: 885  LAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYG 939



 Score = 40.4 bits (93), Expect(3) = e-125
 Identities = 15/26 (57%), Positives = 21/26 (80%)
 Frame = +1

Query: 1513 VMIRCDSQSAIYLAKNQVFHGRTKHI 1590
            + + CDSQSA+++A+N  FH RTKHI
Sbjct: 1228 ITVYCDSQSALHIARNPAFHSRTKHI 1253


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  261 bits (668), Expect(3) = e-125
 Identities = 133/257 (51%), Positives = 176/257 (68%), Gaps = 2/257 (0%)
 Frame = +3

Query: 735  CVYTRVFQNGMQILLLLYVDDMLIACQDMSTILELKTLLRNST*RI*L--CKKIIGMKIR 908
            C Y + F     I+LLLYVDDML+   +   + ELK  L        L    KI+GM+I 
Sbjct: 968  CTYYKRFDGNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIH 1027

Query: 909  RDRNVGRIWLSQVKYIQKVLEKFNMVEAKSVSTPLASHFSLSAKQSPFTDAQVEEMETIP 1088
            RDR   +IWLSQ  Y++KVL +FNM + K +STPL  +F LS+  SP  +A+  EM  +P
Sbjct: 1028 RDRKDRKIWLSQKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVP 1087

Query: 1089 YASAIGCLMYAMVCTRPNIAQAINVVSKYMANPGKPHWEAVKWILRYLKGTKKLGILFER 1268
            YASA+G LMYAM+CTRP+IAQA+ VVS++MA+PGK HW AVK I+RY+KGT  + + F  
Sbjct: 1088 YASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGG 1147

Query: 1269 KQEGACISGFVDADYAGDLDKRRSTTGYVFTYGGGPISWRAMLQSVCALSTTEAKYMALA 1448
             +    + G+VD+D+AGD DKR+STTGYVFT  GG +SW + LQ+V ALSTTEA+YMA  
Sbjct: 1148 SE--LTVWGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAAT 1205

Query: 1449 EASKEAVWLRGLASEFG 1499
            +A KEA+W++ L  E G
Sbjct: 1206 QACKEAIWMQRLMEELG 1222



 Score =  198 bits (504), Expect(3) = e-125
 Identities = 97/175 (55%), Positives = 131/175 (74%), Gaps = 3/175 (1%)
 Frame = +2

Query: 146  SWR---IVTREAYYALSVSEGDPTTFYDTLESKDHEGWMNAMTEEMESLHKNSVWELVPK 316
            SW+   ++T    Y L   EG+P+TF++ L   D   WM AM EEME+LH+N  WELV  
Sbjct: 766  SWQSDYVMTSHDAYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELVEL 825

Query: 317  PKDRKLVGCKWVYRKKE*ALENEVPKFKARLVAKGYSQKEGIDYDEIFSPVVRHTSIILL 496
            PK RK +G KWVY+ K     ++V +++ARLV KGY+QKEGID++EIFSPVVR T+I ++
Sbjct: 826  PKGRKAIGNKWVYKIKRDG-NDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVV 884

Query: 497  LSMVA*QDMELEKLNVKTAFLHGDLEEDIYVVQPQGFVKKGTKNLVCRLKKSLYG 661
            L+M A  D+ LE+L+VKTAFLHG+LEE+IY++QP+GF ++G +NLVCRL KSLYG
Sbjct: 885  LAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYG 939



 Score = 40.4 bits (93), Expect(3) = e-125
 Identities = 15/26 (57%), Positives = 21/26 (80%)
 Frame = +1

Query: 1513 VMIRCDSQSAIYLAKNQVFHGRTKHI 1590
            + + CDSQSA+++A+N  FH RTKHI
Sbjct: 1228 ITVYCDSQSALHIARNPAFHSRTKHI 1253


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  264 bits (675), Expect(3) = e-125
 Identities = 133/257 (51%), Positives = 179/257 (69%), Gaps = 2/257 (0%)
 Frame = +3

Query: 735  CVYTRVFQNGMQILLLLYVDDMLIACQDMSTILELKTLLRNST*RI*L--CKKIIGMKIR 908
            C Y + F++   I+LLLYVDDML+A  +   I ELK  L        L    KI+GM+I 
Sbjct: 972  CAYYKRFEDNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIH 1031

Query: 909  RDRNVGRIWLSQVKYIQKVLEKFNMVEAKSVSTPLASHFSLSAKQSPFTDAQVEEMETIP 1088
            RDRN  +IWLSQ  Y++K+L +FNM + KS+STPL  +F LS+   P  +A+ +EM  +P
Sbjct: 1032 RDRNNRKIWLSQKNYLKKILRRFNMQDCKSISTPLPVNFKLSSSMCPSNEAERKEMSRVP 1091

Query: 1089 YASAIGCLMYAMVCTRPNIAQAINVVSKYMANPGKPHWEAVKWILRYLKGTKKLGILFER 1268
            YASA+G LM+AM+CTRP+IAQA+  VS+YMANPG  HW AVK ILRY++GT  + + +  
Sbjct: 1092 YASAVGSLMFAMICTRPDIAQAVGAVSRYMANPGGEHWIAVKRILRYIRGTSNVALCYGG 1151

Query: 1269 KQEGACISGFVDADYAGDLDKRRSTTGYVFTYGGGPISWRAMLQSVCALSTTEAKYMALA 1448
             +    + G+VD+D+AGDLDKR+STTGYVFT  G  +SW + LQ+V ALSTTEA+YMA  
Sbjct: 1152 SE--FTVRGYVDSDFAGDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALSTTEAEYMAAT 1209

Query: 1449 EASKEAVWLRGLASEFG 1499
            +A KEA+W++ L  E G
Sbjct: 1210 QACKEAIWIQRLLEELG 1226



 Score =  195 bits (495), Expect(3) = e-125
 Identities = 93/162 (57%), Positives = 125/162 (77%)
 Frame = +2

Query: 176  YALSVSEGDPTTFYDTLESKDHEGWMNAMTEEMESLHKNSVWELVPKPKDRKLVGCKWVY 355
            Y L   +G+P+TF++ L S D   WM AM EE+E+LHKN  WELVP P  RK +G KWVY
Sbjct: 783  YCLLTEDGEPSTFHEALNSLDVALWMTAMQEEIEALHKNKTWELVPLPHGRKAIGNKWVY 842

Query: 356  RKKE*ALENEVPKFKARLVAKGYSQKEGIDYDEIFSPVVRHTSIILLLSMVA*QDMELEK 535
            + K     ++V +++ARLV KGY+QKEGID++EIFSPVVR T++ ++L+M A  D+ LE+
Sbjct: 843  KIKRDG-NDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCATFDLHLEQ 901

Query: 536  LNVKTAFLHGDLEEDIYVVQPQGFVKKGTKNLVCRLKKSLYG 661
            L+VKTAFLHG+LEE+IY++QP+GF + G +NLVCRL KSLYG
Sbjct: 902  LDVKTAFLHGELEEEIYMLQPEGFAETGKENLVCRLNKSLYG 943



 Score = 39.7 bits (91), Expect(3) = e-125
 Identities = 15/26 (57%), Positives = 21/26 (80%)
 Frame = +1

Query: 1513 VMIRCDSQSAIYLAKNQVFHGRTKHI 1590
            + + CDSQSA+++A+N  FH RTKHI
Sbjct: 1232 IPVFCDSQSALHIARNPAFHSRTKHI 1257


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  260 bits (665), Expect(3) = e-125
 Identities = 132/257 (51%), Positives = 179/257 (69%), Gaps = 2/257 (0%)
 Frame = +3

Query: 735  CVYTRVFQNGMQILLLLYVDDMLIACQDMSTILELKTLLRNST*RI*L--CKKIIGMKIR 908
            C Y + F++   I+LLLYVDDML+A  +   I ELK  L        L    KI+GM+I 
Sbjct: 972  CAYYKRFEDNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIH 1031

Query: 909  RDRNVGRIWLSQVKYIQKVLEKFNMVEAKSVSTPLASHFSLSAKQSPFTDAQVEEMETIP 1088
            RDRN  +IWLSQ  Y++K+L +FNM + KS+ST L  +F LS+   P  +A+ +EM  +P
Sbjct: 1032 RDRNNMKIWLSQKNYLKKILRRFNMQDCKSISTSLPVNFKLSSSMCPSNEAERKEMSRVP 1091

Query: 1089 YASAIGCLMYAMVCTRPNIAQAINVVSKYMANPGKPHWEAVKWILRYLKGTKKLGILFER 1268
            YASA+G LM+AM+CTRP+IAQA+ VVS+YMANPG  HW AVK ILRY++GT  + + +  
Sbjct: 1092 YASAVGSLMFAMICTRPDIAQAVGVVSRYMANPGGEHWIAVKRILRYIRGTSDVALCYGG 1151

Query: 1269 KQEGACISGFVDADYAGDLDKRRSTTGYVFTYGGGPISWRAMLQSVCALSTTEAKYMALA 1448
             +    + G+VD+D+AGDLDKR+STTGYVFT  G  +SW + LQ+V ALSTTEA+YMA  
Sbjct: 1152 SE--FTVRGYVDSDFAGDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALSTTEAEYMAAT 1209

Query: 1449 EASKEAVWLRGLASEFG 1499
            +A K+A+W++ L  E G
Sbjct: 1210 QACKKAIWIQRLLEELG 1226



 Score =  197 bits (500), Expect(3) = e-125
 Identities = 93/162 (57%), Positives = 126/162 (77%)
 Frame = +2

Query: 176  YALSVSEGDPTTFYDTLESKDHEGWMNAMTEEMESLHKNSVWELVPKPKDRKLVGCKWVY 355
            Y L   +G+P+TF++ L S D   WM AM EE+E+LHKN  WELVP P+ RK +G KWVY
Sbjct: 783  YCLLTEDGEPSTFHEALNSSDVALWMTAMQEEIEALHKNKTWELVPLPRGRKAIGNKWVY 842

Query: 356  RKKE*ALENEVPKFKARLVAKGYSQKEGIDYDEIFSPVVRHTSIILLLSMVA*QDMELEK 535
            + K     ++V +++ARLV KGY+QKEGID++EIFSPVVR T++ ++L+M A  D+ LE+
Sbjct: 843  KIKRDG-NDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCATFDLHLEQ 901

Query: 536  LNVKTAFLHGDLEEDIYVVQPQGFVKKGTKNLVCRLKKSLYG 661
            L+VKTAFLHG+LEE+IY++QP+GF + G +NLVCRL KSLYG
Sbjct: 902  LDVKTAFLHGELEEEIYMLQPEGFAETGKENLVCRLNKSLYG 943



 Score = 41.2 bits (95), Expect(3) = e-125
 Identities = 15/26 (57%), Positives = 22/26 (84%)
 Frame = +1

Query: 1513 VMIRCDSQSAIYLAKNQVFHGRTKHI 1590
            +++ CDSQSA+++A+N  FH RTKHI
Sbjct: 1232 ILVFCDSQSALHIARNPAFHSRTKHI 1257


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  260 bits (664), Expect(3) = e-124
 Identities = 132/257 (51%), Positives = 176/257 (68%), Gaps = 2/257 (0%)
 Frame = +3

Query: 735  CVYTRVFQNGMQILLLLYVDDMLIACQDMSTILELKTLLRNST*RI*L--CKKIIGMKIR 908
            C Y + F     I+LLLYVDD+L+   +   + ELK  L        L    KI+GM+I 
Sbjct: 968  CTYYKRFDGNDFIILLLYVDDILVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIH 1027

Query: 909  RDRNVGRIWLSQVKYIQKVLEKFNMVEAKSVSTPLASHFSLSAKQSPFTDAQVEEMETIP 1088
            RDR   +IWLSQ  Y++KVL +FNM + K +STPL  +F LS+  SP  +A+  EM  +P
Sbjct: 1028 RDRKDRKIWLSQKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVP 1087

Query: 1089 YASAIGCLMYAMVCTRPNIAQAINVVSKYMANPGKPHWEAVKWILRYLKGTKKLGILFER 1268
            YASA+G LMYAM+CTRP+IAQA+ VVS++MA+PGK HW AVK I+RY+KGT  + + F  
Sbjct: 1088 YASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGG 1147

Query: 1269 KQEGACISGFVDADYAGDLDKRRSTTGYVFTYGGGPISWRAMLQSVCALSTTEAKYMALA 1448
             +    + G+VD+D+AGD DKR+STTGYVFT  GG +SW + LQ+V ALSTTEA+YMA  
Sbjct: 1148 SE--LTVRGYVDSDFAGDHDKRKSTTGYVFTLTGGAVSWLSKLQTVVALSTTEAEYMAAT 1205

Query: 1449 EASKEAVWLRGLASEFG 1499
            +A KEA+W++ L  E G
Sbjct: 1206 QACKEAIWMQRLMEELG 1222



 Score =  194 bits (494), Expect(3) = e-124
 Identities = 96/175 (54%), Positives = 130/175 (74%), Gaps = 3/175 (1%)
 Frame = +2

Query: 146  SWR---IVTREAYYALSVSEGDPTTFYDTLESKDHEGWMNAMTEEMESLHKNSVWELVPK 316
            SW+   ++T    Y L   EG+P+TF++ L   D   WM A+ EEME+L KN  WELV  
Sbjct: 766  SWQSDYVMTGHDAYCLIAEEGEPSTFHEALNGSDASQWMTAIHEEMEALRKNKTWELVEL 825

Query: 317  PKDRKLVGCKWVYRKKE*ALENEVPKFKARLVAKGYSQKEGIDYDEIFSPVVRHTSIILL 496
            PK RK +G KWVY+ K     ++V +++ARLV KGY+QKEGID++EIFSPVVR T+I ++
Sbjct: 826  PKGRKAIGNKWVYKIKRDG-NDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVV 884

Query: 497  LSMVA*QDMELEKLNVKTAFLHGDLEEDIYVVQPQGFVKKGTKNLVCRLKKSLYG 661
            L+M A  D+ LE+L+VKTAFLHG+LEE+IY++QP+GF ++G +NLVCRL KSLYG
Sbjct: 885  LAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYG 939



 Score = 40.4 bits (93), Expect(3) = e-124
 Identities = 15/26 (57%), Positives = 21/26 (80%)
 Frame = +1

Query: 1513 VMIRCDSQSAIYLAKNQVFHGRTKHI 1590
            + + CDSQSA+++A+N  FH RTKHI
Sbjct: 1228 ITVYCDSQSALHIARNPAFHSRTKHI 1253


>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
          Length = 1338

 Score =  273 bits (699), Expect(3) = e-122
 Identities = 135/257 (52%), Positives = 186/257 (72%), Gaps = 2/257 (0%)
 Frame = +3

Query: 735  CVYTRVFQNGMQILLLLYVDDMLIACQDMSTILELKTLLRN--ST*RI*LCKKIIGMKIR 908
            CV+ + F +   I+LLLYVDDMLI  +++S I  LK  L    +   +   K+I+GM+I 
Sbjct: 992  CVFAQKFSDDDFIILLLYVDDMLIVGRNVSRINSLKEQLSKFFAMKDLGPAKQILGMRIM 1051

Query: 909  RDRNVGRIWLSQVKYIQKVLEKFNMVEAKSVSTPLASHFSLSAKQSPFTDAQVEEMETIP 1088
            RDR   ++WLSQ KYI+KVL++FNM + K+VS PLA+HF LS KQSP TD +  +ME IP
Sbjct: 1052 RDREAKKLWLSQEKYIEKVLQRFNMEKTKAVSCPLANHFRLSTKQSPSTDDERRKMERIP 1111

Query: 1089 YASAIGCLMYAMVCTRPNIAQAINVVSKYMANPGKPHWEAVKWILRYLKGTKKLGILFER 1268
            YASA+G LMYAMVCTRP+IA A+ VVS++++NPGK HW+AVKWILRYL+GT KL + F  
Sbjct: 1112 YASAVGSLMYAMVCTRPDIAHAVGVVSRFLSNPGKEHWDAVKWILRYLRGTSKLCLCF-- 1169

Query: 1269 KQEGACISGFVDADYAGDLDKRRSTTGYVFTYGGGPISWRAMLQSVCALSTTEAKYMALA 1448
             ++   + G+ DAD AGD+D R+ST+GY+  + GG +SW++ LQ   ALSTTEA+++A  
Sbjct: 1170 GEDNPVLVGYTDADMAGDVDSRKSTSGYLINFSGGAVSWQSKLQKCVALSTTEAEFIAAT 1229

Query: 1449 EASKEAVWLRGLASEFG 1499
            EA KE +W++   +E G
Sbjct: 1230 EACKELIWMKKFLTELG 1246



 Score =  174 bits (442), Expect(3) = e-122
 Identities = 89/193 (46%), Positives = 135/193 (69%), Gaps = 5/193 (2%)
 Frame = +2

Query: 98   QPQKFLLPS*PWRLQTSWRIVTREAYYA-----LSVSEGDPTTFYDTLESKDHEGWMNAM 262
            QPQ  +L + P+  + S R+V +   Y+     L    G+P +F + ++ +  E W+ AM
Sbjct: 773  QPQPPILNNPPYHTR-SGRVVQQSTRYSPHEYVLLTDGGEPDSFEEAIDDEHKEKWIEAM 831

Query: 263  TEEMESLHKNSVWELVPKPKDRKLVGCKWVYRKKE*ALENEVPKFKARLVAKGYSQKEGI 442
             +E++SLH+N  +ELV  PK ++ +  KWV++ K     N +P+FKARLV KG++Q++GI
Sbjct: 832  QDEIKSLHENKTFELVKLPKGKRALKNKWVFKMKHDE-HNSLPRFKARLVVKGFNQRKGI 890

Query: 443  DYDEIFSPVVRHTSIILLLSMVA*QDMELEKLNVKTAFLHGDLEEDIYVVQPQGFVKKGT 622
            D+DEIFSPVV+ TSI  +L + A  ++E+E+++VKTAFLHGDLEE+IY+ QP GF +KG 
Sbjct: 891  DFDEIFSPVVKMTSIRTVLGLAASLNLEVEQMDVKTAFLHGDLEEEIYMEQPDGFQQKGK 950

Query: 623  KNLVCRLKKSLYG 661
            ++ VCRL+KSLYG
Sbjct: 951  EDYVCRLRKSLYG 963



 Score = 40.4 bits (93), Expect(3) = e-122
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = +1

Query: 1525 CDSQSAIYLAKNQVFHGRTKHIE 1593
            CDSQSAI+LAKN  FH R+KHI+
Sbjct: 1256 CDSQSAIHLAKNASFHSRSKHID 1278


>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1138

 Score =  275 bits (703), Expect(3) = e-121
 Identities = 140/255 (54%), Positives = 189/255 (74%), Gaps = 2/255 (0%)
 Frame = +3

Query: 735  CVYTRVFQNGMQILLLLYVDDMLIACQDMSTILELKTLLRNST*RI*L--CKKIIGMKIR 908
            CVY +V  +G  I LLLYVDDMLIA +D S I +LK  L +      L   KKI+G++I 
Sbjct: 803  CVYPKVV-DGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGIEIT 861

Query: 909  RDRNVGRIWLSQVKYIQKVLEKFNMVEAKSVSTPLASHFSLSAKQSPFTDAQVEEMETIP 1088
            ++R+ G+++LSQ  YI+KVL +FNM +AK VSTPLA+HF LS+   P +D  +E M  +P
Sbjct: 862  KERHSGKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVP 921

Query: 1089 YASAIGCLMYAMVCTRPNIAQAINVVSKYMANPGKPHWEAVKWILRYLKGTKKLGILFER 1268
            Y+S +G LMYAMVC+RP+++ A++VVS+YMANPGK HW+AV+WI RYL GT    + F R
Sbjct: 922  YSSVVGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLCGTSSACLQFGR 981

Query: 1269 KQEGACISGFVDADYAGDLDKRRSTTGYVFTYGGGPISWRAMLQSVCALSTTEAKYMALA 1448
             ++G  + G+VD+D+AGDLD+RRS  GYVFT GG  +SW+A LQ+  ALSTTEA+YMA++
Sbjct: 982  SRDG--LVGYVDSDFAGDLDRRRSLAGYVFTIGGCAVSWKANLQATVALSTTEAEYMAIS 1039

Query: 1449 EASKEAVWLRGLASE 1493
            EA KE +WLRGL +E
Sbjct: 1040 EACKETIWLRGLYTE 1054



 Score =  172 bits (435), Expect(3) = e-121
 Identities = 85/168 (50%), Positives = 123/168 (73%), Gaps = 5/168 (2%)
 Frame = +2

Query: 176  YALSVSE-----GDPTTFYDTLESKDHEGWMNAMTEEMESLHKNSVWELVPKPKDRKLVG 340
            YALSV+E      +P+T+ + + S D   W+ AM +EM+SL KN  W+LV  PK++KL+ 
Sbjct: 637  YALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMDSLEKNHTWKLVKLPKEKKLIH 696

Query: 341  CKWVYRKKE*ALENEVPKFKARLVAKGYSQKEGIDYDEIFSPVVRHTSIILLLSMVA*QD 520
            CKW++++KE     +  ++KA LVAKGYSQ  GID++++FSPVV+H+SI  LLS+VA  D
Sbjct: 697  CKWIFKRKEGMSPTDEARYKAMLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHD 756

Query: 521  MELEKLNVKTAFLHGDLEEDIYVVQPQGFVKKGTKNLVCRLKKSLYGS 664
             EL++++VKTAFLHG+LEEDIY+ QP+GFV  G +NL  + ++S Y S
Sbjct: 757  YELDQMDVKTAFLHGELEEDIYMEQPEGFVIPGKENL--KFRRSNYDS 802



 Score = 40.4 bits (93), Expect(3) = e-121
 Identities = 18/27 (66%), Positives = 22/27 (81%)
 Frame = +1

Query: 1513 VMIRCDSQSAIYLAKNQVFHGRTKHIE 1593
            + I CDSQSAI L K+Q+FH RTKHI+
Sbjct: 1062 INIFCDSQSAICLTKDQMFHERTKHID 1088


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  260 bits (664), Expect(3) = e-121
 Identities = 133/257 (51%), Positives = 175/257 (68%), Gaps = 2/257 (0%)
 Frame = +3

Query: 735  CVYTRVFQNGMQILLLLYVDDMLIACQDMSTILELKTLLRNST*RI*L--CKKIIGMKIR 908
            C Y + F +G  I+LLLYVDDML+   +   + ELK  L        L    KI+GM+I 
Sbjct: 968  CTYYKRFDDGDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIH 1027

Query: 909  RDRNVGRIWLSQVKYIQKVLEKFNMVEAKSVSTPLASHFSLSAKQSPFTDAQVEEMETIP 1088
            RDR   +IWLSQ  Y+QKVL +FNM +   +STPL  ++ LS+   P ++A+  EM  +P
Sbjct: 1028 RDRKDRKIWLSQKNYLQKVLRRFNMQDYNPISTPLPVNYKLSSSMIPSSEAERMEMSRVP 1087

Query: 1089 YASAIGCLMYAMVCTRPNIAQAINVVSKYMANPGKPHWEAVKWILRYLKGTKKLGILFER 1268
            YASA+G LMYAM+CTRP+IAQA+  VS++MA+PGK HW AVK ILRY++GT    + F  
Sbjct: 1088 YASAVGSLMYAMICTRPDIAQAVGTVSRFMADPGKEHWNAVKRILRYIRGTSGAALCFGG 1147

Query: 1269 KQEGACISGFVDADYAGDLDKRRSTTGYVFTYGGGPISWRAMLQSVCALSTTEAKYMALA 1448
             +    I G+VD+D+AGDLDKR+STTGYVFT  GG +SW + LQ+V ALSTTEA+YMA  
Sbjct: 1148 SE--FTIRGYVDSDFAGDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAAT 1205

Query: 1449 EASKEAVWLRGLASEFG 1499
            +A KEA+W + L  E G
Sbjct: 1206 QACKEAIWTQRLLEELG 1222



 Score =  186 bits (473), Expect(3) = e-121
 Identities = 91/169 (53%), Positives = 130/169 (76%)
 Frame = +2

Query: 155  IVTREAYYALSVSEGDPTTFYDTLESKDHEGWMNAMTEEMESLHKNSVWELVPKPKDRKL 334
            + + +AY  LS  +G+P+TF++ +   D   WM AM EE+E+LH+N+ WELV  PK RK 
Sbjct: 773  MASHDAYCLLS-EDGEPSTFHEAVNGSDASLWMAAMQEEIEALHRNNTWELVELPKGRKA 831

Query: 335  VGCKWVYRKKE*ALENEVPKFKARLVAKGYSQKEGIDYDEIFSPVVRHTSIILLLSMVA* 514
            +G KWV++ K     ++V +++ARLV KGY+QKEGID++EIFSPVVR T+I ++L+M A 
Sbjct: 832  IGNKWVFKIKRDG-NDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRIVLAMCAA 890

Query: 515  QDMELEKLNVKTAFLHGDLEEDIYVVQPQGFVKKGTKNLVCRLKKSLYG 661
             ++ LE+L+VKTAFLHG+LEE+IY++QP+GF +K  +NLVCRL KSLYG
Sbjct: 891  FELHLEQLDVKTAFLHGELEEEIYMLQPEGFEEKERENLVCRLTKSLYG 939



 Score = 38.1 bits (87), Expect(3) = e-121
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = +1

Query: 1513 VMIRCDSQSAIYLAKNQVFHGRTKHI 1590
            + + CDS SA+++A+N  FH RTKHI
Sbjct: 1228 ITVYCDSPSALHIARNPAFHSRTKHI 1253