BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia22_contig00010439
         (2252 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...   875   0.0  
emb|CBI29879.3| unnamed protein product [Vitis vinifera]              852   0.0  
ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform ...   832   0.0  
ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform ...   832   0.0  
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...   812   0.0  
ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I sub...   782   0.0  
ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citr...   780   0.0  
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub...   770   0.0  
ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I sub...   769   0.0  
emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]   758   0.0  
gb|EXC04356.1| DNA-directed RNA polymerase I subunit rpa1 [Morus...   751   0.0  
ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I sub...   749   0.0  
ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I sub...   739   0.0  
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub...   734   0.0  
ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phas...   734   0.0  
ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I sub...   731   0.0  
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   729   0.0  
ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Caps...   727   0.0  
gb|EYU39881.1| hypothetical protein MIMGU_mgv1a000122mg [Mimulus...   716   0.0  
ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana...   709   0.0  

>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score =  875 bits (2260), Expect = 0.0
 Identities = 461/711 (64%), Positives = 533/711 (74%), Gaps = 17/711 (2%)
 Frame = +2

Query: 167  TEGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGVV-PAXXXXXXXXXXXXXXRAPC 343
            T G TE +EAV+F FFTDEEVRK+SF + TS  +L  V  P                 PC
Sbjct: 54   TSGTTEFVEAVKFSFFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSIDENTPC 113

Query: 344  KSCGQ-SGRCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENCISQL 520
            +SCGQ S  CPGHCGH+ L+  VYNPLLFN+L+ +LQ+TCFFCHHF+   S V+  +SQL
Sbjct: 114  QSCGQRSFYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTCFFCHHFKTSSSLVQKYVSQL 173

Query: 521  ELIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVS--STVSLGAQYHSLEHSKQQKWTSLQ 694
            ELI KG+V+GAKNLDS+     S  EDSDGSHVS  STV+  A+ +   H KQQ+WTSLQ
Sbjct: 174  ELISKGDVVGAKNLDSISPSESSYPEDSDGSHVSCSSTVNSSARDNCSVHLKQQEWTSLQ 233

Query: 695  LTEAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTS-MPDAHARANRIKGCKLKGS 871
              EAMS++DNFLK KH DCKNC AK+P++TKPTFGWF  + + DA  RAN I+G KL+  
Sbjct: 234  CIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTRANVIRGSKLERP 293

Query: 872  FVGEIEEDPSSDIENADNTSPWGNGSDTSE----ITPINE-----TKRKKNKRGQAHPEL 1024
                 EE  SS++EN ++  PWG+G DT E    I P +      TKR + K  QA  E 
Sbjct: 294  LSRVAEEKSSSEVENVNDMFPWGDGVDTDETHSSIAPTDGIQDTVTKRLERKGAQAPIEF 353

Query: 1025 LKES--FSGSLLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTIL 1198
            +K+   FSG LLPSEVR +++ LWENE ELCSFI DI ++      + AGYSMFFL+TIL
Sbjct: 354  IKQKSFFSGPLLPSEVRDIMERLWENEAELCSFISDILQERLGASGNKAGYSMFFLETIL 413

Query: 1199 VPPIKFRPPSKGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSV 1378
            VPPIKFRPPSKG  SVMEHPQTVLLGKV++AN+ LGNA+ + S  SK ++ RW+ LQQS+
Sbjct: 414  VPPIKFRPPSKGQISVMEHPQTVLLGKVLQANIALGNAHANNSERSK-IISRWMDLQQSI 472

Query: 1379 NVSFDSKTM-GQGQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEI 1555
            NV FD KT  GQGQR   SGICQLLEKK+G+FRQKMMGKRVNFACRSVISPDPYLAVNEI
Sbjct: 473  NVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEI 532

Query: 1556 GIPPYFALRLTYPERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXX 1735
            GIPPYFALRLTYPE+VTPWN+ KLRDAIING EIHPGATHY DK S   L          
Sbjct: 533  GIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISI 592

Query: 1736 XXXKLPSSRGVVTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLK 1915
               KLPSSRGVV QPG+S D +FEGKIV RHLQDGDIVLVNRQPTLHKPSIMAHVVRVLK
Sbjct: 593  SR-KLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLK 651

Query: 1916 GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRAL 2095
            GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQY+VPSRG+PIR L
Sbjct: 652  GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGL 711

Query: 2096 IQDHIISAVLLTKKDTFLSRDEYSQLLYXXXXXXXXXXXXXCKPGQKVCLV 2248
            IQDHI+SAVLLTKKDTFL+R++Y+QLLY              KPG+KV ++
Sbjct: 712  IQDHIVSAVLLTKKDTFLTREQYNQLLYSSGLSSGSGSFIG-KPGKKVSVL 761


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score =  852 bits (2200), Expect = 0.0
 Identities = 453/706 (64%), Positives = 523/706 (74%), Gaps = 8/706 (1%)
 Frame = +2

Query: 155  MSYRTEGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGVV-PAXXXXXXXXXXXXXX 331
            M++  EG TE +EAV+F FFTDEEVRK+SF + TS  +L  V  P               
Sbjct: 1    MAHVIEGTTEFVEAVKFSFFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSIDE 60

Query: 332  RAPCKSCGQ-SGRCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENC 508
              PC+SCGQ S  CPGHCGH+ L+  VYNPLLFN+L+ +LQ+TCFFCHHF+   S V+  
Sbjct: 61   NTPCQSCGQRSFYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTCFFCHHFKTSSSLVQKY 120

Query: 509  ISQLELIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVS--STVSLGAQYHSLEHSKQQKW 682
            +SQLELI KG+V+GAKNLDS+     S  EDSDGSHVS  STV+  A+ +   H KQQ+W
Sbjct: 121  VSQLELISKGDVVGAKNLDSISPSESSYPEDSDGSHVSCSSTVNSSARDNCSVHLKQQEW 180

Query: 683  TSLQLTEAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTS-MPDAHARANRIKGCK 859
            TSLQ  EAMS++DNFLK KH DCKNC AK+P++TKPTFGWF  + + DA  RAN I+G K
Sbjct: 181  TSLQCIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTRANVIRGSK 240

Query: 860  LKGSFVGEIEEDPSSDIENADNTSPWGNGSDTSEITPINETKRKKNKRGQAHPELLKES- 1036
            L+    G   ++  S I   D         DT        TKR + K  QA  E +K+  
Sbjct: 241  LERPLNGVDTDETHSSIAPTDGIQ------DTV-------TKRLERKGAQAPIEFIKQKS 287

Query: 1037 -FSGSLLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILVPPIK 1213
             FSG LLPSEVR +++ LWENE ELCSFI DI ++      + AGYSMFFL+TILVPPIK
Sbjct: 288  FFSGPLLPSEVRDIMERLWENEAELCSFISDILQERLGASGNKAGYSMFFLETILVPPIK 347

Query: 1214 FRPPSKGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVNVSFD 1393
            FRPPSKG  SVMEHPQTVLLGKV++AN+ LGNA+ + S  SK ++ RW+ LQQS+NV FD
Sbjct: 348  FRPPSKGQISVMEHPQTVLLGKVLQANIALGNAHANNSERSK-IISRWMDLQQSINVLFD 406

Query: 1394 SKTM-GQGQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPY 1570
             KT  GQGQR   SGICQLLEKK+G+FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPY
Sbjct: 407  GKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPY 466

Query: 1571 FALRLTYPERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKL 1750
            FALRLTYPE+VTPWN+ KLRDAIING EIHPGATHY DK S   L             KL
Sbjct: 467  FALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISISR-KL 525

Query: 1751 PSSRGVVTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTL 1930
            PSSRGVV QPG+S D +FEGKIV RHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTL
Sbjct: 526  PSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTL 585

Query: 1931 RMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHI 2110
            RMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQY+VPSRG+PIR LIQDHI
Sbjct: 586  RMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLIQDHI 645

Query: 2111 ISAVLLTKKDTFLSRDEYSQLLYXXXXXXXXXXXXXCKPGQKVCLV 2248
            +SAVLLTKKDTFL+R++Y+QLLY              KPG+KV ++
Sbjct: 646  VSAVLLTKKDTFLTREQYNQLLYSSGLSSGSGSFIG-KPGKKVSVL 690


>ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
            gi|508717459|gb|EOY09356.1| Nuclear RNA polymerase A1,
            putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score =  832 bits (2149), Expect = 0.0
 Identities = 445/710 (62%), Positives = 520/710 (73%), Gaps = 15/710 (2%)
 Frame = +2

Query: 155  MSYRTEGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGVV-PAXXXXXXXXXXXXXX 331
            M+  TEGAT+S+EAVRF F T EEVRKHSF++ T+A+LL  +  P               
Sbjct: 1    MAQITEGATDSVEAVRFNFMTTEEVRKHSFLKVTNANLLDLMDRPMPGGLYDAVLGPLED 60

Query: 332  RAPCKSCGQSG-RCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENC 508
            R PCKSCG     CPGHCGH+ L+ P+YNPLLFN L+ +LQR CFFC+HFRA +++VE C
Sbjct: 61   RTPCKSCGLLKLHCPGHCGHIDLVSPIYNPLLFNFLHTLLQRICFFCYHFRAEKTEVERC 120

Query: 509  ISQLELIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSSTVSLGAQYHSLEHSKQQKWTS 688
            +SQL+LI  G+++GAK LDS   +  S  + ++GS  S ++      H+ E  K ++WTS
Sbjct: 121  VSQLKLIGNGDIVGAKRLDSDSADASSYSDYNEGSQESGSI-----VHNSEAVKPKEWTS 175

Query: 689  LQLTEAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTS-MPDAHARANRIKGCKLK 865
            LQL EAMS+L+NFLK K+  CKNC AKNP ITKP FGW   + M  A  R N I+GCK+ 
Sbjct: 176  LQLMEAMSVLNNFLKLKYNKCKNCDAKNPNITKPVFGWLHMNGMLGAQMRENVIRGCKMV 235

Query: 866  GSFVGEIEEDPSSDIENADNTSPWGNG-----SDTSEI----TPINETKRKKNKRGQAHP 1018
             +F     ++  S +E+AD+ S  GNG      DTSEI    +  N  K +K K+ Q   
Sbjct: 236  DTF----SDEAGSGLEDADDVSSSGNGVDIAEMDTSEIGFTGSEGNGAKARK-KKAQVPL 290

Query: 1019 ELLKES--FSGSLLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDT 1192
            E +K+   FSG LLPSEV+ + KLLWENE ELCS I DIQ+          GYSMFFL+T
Sbjct: 291  EFMKQKNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQQG---FGKKVGYSMFFLET 347

Query: 1193 ILVPPIKFRPPSKGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQ 1372
            ILVPPIKFR P+KGGDSVMEHPQTVLL KV++AN+ LGNAY +    SK VV  W+ LQQ
Sbjct: 348  ILVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQANISLGNAYTNNLQSSKAVVRLWMDLQQ 407

Query: 1373 SVNVSFDSKT-MGQGQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVN 1549
            SVN+ FDSKT M QG+ V +SGICQLLEKK+G+FRQKMMGKRVNFACRSVISPDPYLAVN
Sbjct: 408  SVNLLFDSKTAMSQGRDV-SSGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVN 466

Query: 1550 EIGIPPYFALRLTYPERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXX 1729
            EIGIPPYFALRLTYPERVTPWN+ KLR+AIINGSE HPGATHY DK S   L        
Sbjct: 467  EIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRL-PPSQKAR 525

Query: 1730 XXXXXKLPSSRGVVTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRV 1909
                 KLPSSRG + QPGK+ D +FEGKIV RHLQDGD+VLVNRQPTLHKPSIMAHVVRV
Sbjct: 526  ISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRV 585

Query: 1910 LKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIR 2089
            LKGEKT+RMHYANCSTYNADFDGDE+NVHFPQDEISRAEAYNIVNANNQYV PS GEPIR
Sbjct: 586  LKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIR 645

Query: 2090 ALIQDHIISAVLLTKKDTFLSRDEYSQLLYXXXXXXXXXXXXXCKPGQKV 2239
            ALIQDHI+SAVLLTK+DTFLSRDE++QLLY              KPGQKV
Sbjct: 646  ALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKV 695


>ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
            gi|508717458|gb|EOY09355.1| Nuclear RNA polymerase A1,
            putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score =  832 bits (2149), Expect = 0.0
 Identities = 445/710 (62%), Positives = 520/710 (73%), Gaps = 15/710 (2%)
 Frame = +2

Query: 155  MSYRTEGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGVV-PAXXXXXXXXXXXXXX 331
            M+  TEGAT+S+EAVRF F T EEVRKHSF++ T+A+LL  +  P               
Sbjct: 1    MAQITEGATDSVEAVRFNFMTTEEVRKHSFLKVTNANLLDLMDRPMPGGLYDAVLGPLED 60

Query: 332  RAPCKSCGQSG-RCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENC 508
            R PCKSCG     CPGHCGH+ L+ P+YNPLLFN L+ +LQR CFFC+HFRA +++VE C
Sbjct: 61   RTPCKSCGLLKLHCPGHCGHIDLVSPIYNPLLFNFLHTLLQRICFFCYHFRAEKTEVERC 120

Query: 509  ISQLELIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSSTVSLGAQYHSLEHSKQQKWTS 688
            +SQL+LI  G+++GAK LDS   +  S  + ++GS  S ++      H+ E  K ++WTS
Sbjct: 121  VSQLKLIGNGDIVGAKRLDSDSADASSYSDYNEGSQESGSI-----VHNSEAVKPKEWTS 175

Query: 689  LQLTEAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTS-MPDAHARANRIKGCKLK 865
            LQL EAMS+L+NFLK K+  CKNC AKNP ITKP FGW   + M  A  R N I+GCK+ 
Sbjct: 176  LQLMEAMSVLNNFLKLKYNKCKNCDAKNPNITKPVFGWLHMNGMLGAQMRENVIRGCKMV 235

Query: 866  GSFVGEIEEDPSSDIENADNTSPWGNG-----SDTSEI----TPINETKRKKNKRGQAHP 1018
             +F     ++  S +E+AD+ S  GNG      DTSEI    +  N  K +K K+ Q   
Sbjct: 236  DTF----SDEAGSGLEDADDVSSSGNGVDIAEMDTSEIGFTGSEGNGAKARK-KKAQVPL 290

Query: 1019 ELLKES--FSGSLLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDT 1192
            E +K+   FSG LLPSEV+ + KLLWENE ELCS I DIQ+          GYSMFFL+T
Sbjct: 291  EFMKQKNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQQG---FGKKVGYSMFFLET 347

Query: 1193 ILVPPIKFRPPSKGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQ 1372
            ILVPPIKFR P+KGGDSVMEHPQTVLL KV++AN+ LGNAY +    SK VV  W+ LQQ
Sbjct: 348  ILVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQANISLGNAYTNNLQSSKAVVRLWMDLQQ 407

Query: 1373 SVNVSFDSKT-MGQGQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVN 1549
            SVN+ FDSKT M QG+ V +SGICQLLEKK+G+FRQKMMGKRVNFACRSVISPDPYLAVN
Sbjct: 408  SVNLLFDSKTAMSQGRDV-SSGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVN 466

Query: 1550 EIGIPPYFALRLTYPERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXX 1729
            EIGIPPYFALRLTYPERVTPWN+ KLR+AIINGSE HPGATHY DK S   L        
Sbjct: 467  EIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRL-PPSQKAR 525

Query: 1730 XXXXXKLPSSRGVVTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRV 1909
                 KLPSSRG + QPGK+ D +FEGKIV RHLQDGD+VLVNRQPTLHKPSIMAHVVRV
Sbjct: 526  ISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRV 585

Query: 1910 LKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIR 2089
            LKGEKT+RMHYANCSTYNADFDGDE+NVHFPQDEISRAEAYNIVNANNQYV PS GEPIR
Sbjct: 586  LKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIR 645

Query: 2090 ALIQDHIISAVLLTKKDTFLSRDEYSQLLYXXXXXXXXXXXXXCKPGQKV 2239
            ALIQDHI+SAVLLTK+DTFLSRDE++QLLY              KPGQKV
Sbjct: 646  ALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKV 695


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score =  812 bits (2097), Expect = 0.0
 Identities = 431/697 (61%), Positives = 510/697 (73%), Gaps = 6/697 (0%)
 Frame = +2

Query: 167  TEGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGVV-PAXXXXXXXXXXXXXXRAPC 343
            ++GATESI+++ F F TDEEVRKHSFV+ T+  LL  V  P               R  C
Sbjct: 8    SKGATESIDSISFSFLTDEEVRKHSFVKITNPRLLDLVERPVPGGLYDPALGPLSERTIC 67

Query: 344  KSCGQ-SGRCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENCISQL 520
            K+CGQ S  CPGHCGH+ L+ PVYNPLLFN L+ +LQRTCF C HFR  R +VE CI QL
Sbjct: 68   KTCGQRSTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFLCFHFRMQRGQVEKCIKQL 127

Query: 521  ELIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSS-TVSLGAQYHSLEHSKQQKWTSLQL 697
            ELI+KG+++GAK L+S+        E+SD SH S  T+  G Q +  EH++QQ WTSLQ 
Sbjct: 128  ELIVKGDIVGAKRLESVSPSEALYPEESDLSHESCPTIHSGVQCNDGEHTRQQGWTSLQF 187

Query: 698  TEAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTS-MPDAHARANRIKGCKLKGSF 874
            TEAMS+L+NFLKPK   CKNC + NP ITKPTFGWF TS M DA  RAN I G +L G  
Sbjct: 188  TEAMSVLNNFLKPKFKKCKNCESSNPNITKPTFGWFHTSGMSDASIRANVITGHQLGGLL 247

Query: 875  VGEIEEDPSSDIENADNTSPWGNGSDTSEITPINETKRKKNKRGQAHPELLKESFSGSLL 1054
              EIE   ++D+E+A       +G+         +  +KK ++        K +FS  LL
Sbjct: 248  GSEIEG--TTDVEDAAEPGDQHSGT---------KKHKKKERKEVLEFTRQKSTFSKQLL 296

Query: 1055 PSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILVPPIKFRPPSKG 1234
            PSEV+  L+LLW+NE  +CSFI D+Q+      K  AG +MFFL+TILVPPIKFRPP+KG
Sbjct: 297  PSEVKEKLELLWKNEARICSFISDLQQQEFG--KRKAGPAMFFLETILVPPIKFRPPTKG 354

Query: 1235 GDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVNVSFDSKTM-GQ 1411
            GDSVMEHPQTVLL KV+++N+ LG+A+ +K  HSK +V RW+ LQQS+N  FDSKT  G 
Sbjct: 355  GDSVMEHPQTVLLSKVLQSNISLGDAHINKE-HSK-IVRRWLDLQQSINTLFDSKTAKGP 412

Query: 1412 GQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTY 1591
            GQR GA GICQLLEKK+G+FRQKMMGKRVN+ACRSVISPDPY+ VNEIGIPP FA++LTY
Sbjct: 413  GQREGAPGICQLLEKKEGLFRQKMMGKRVNYACRSVISPDPYIGVNEIGIPPCFAVKLTY 472

Query: 1592 PERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKLPSSRGVV 1771
            PERVTPWNI KLR+A+INGSE HPGATHY DK S++ L             KLPSSRG V
Sbjct: 473  PERVTPWNIAKLRNAVINGSECHPGATHYVDKLSINKL-PPARKARISISRKLPSSRGAV 531

Query: 1772 TQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC 1951
            TQ GK  + +FEGKIV RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC
Sbjct: 532  TQAGKGSECEFEGKIVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC 591

Query: 1952 S-TYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLL 2128
            S TYNADFDGDEMNVHFPQDE+SRAEAYNIVNANNQ+V PS GEP+R LIQDHI+SAVLL
Sbjct: 592  SITYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQFVRPSNGEPLRGLIQDHIVSAVLL 651

Query: 2129 TKKDTFLSRDEYSQLLYXXXXXXXXXXXXXCKPGQKV 2239
            TKKDTFLS+DE++QLLY              +PGQKV
Sbjct: 652  TKKDTFLSQDEFNQLLYSSGVSTVGPNSFHGRPGQKV 688


>ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Citrus
            sinensis]
          Length = 1715

 Score =  782 bits (2020), Expect = 0.0
 Identities = 420/708 (59%), Positives = 498/708 (70%), Gaps = 11/708 (1%)
 Frame = +2

Query: 155  MSYRTEGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGVV-PAXXXXXXXXXXXXXX 331
            M+  TE  TES++AV F F TDEEVRK SF++     LL  V  P               
Sbjct: 1    MNQTTEVTTESVKAVWFSFLTDEEVRKQSFLKLKEPLLLDRVGRPLPGGLYDPILGPLDE 60

Query: 332  RAPCKSCGQSG-RCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENC 508
             + CK+CGQ    CPGH GH+ L++PVYNPLLFN+LY +L+R CFFCHHF+A R +VE C
Sbjct: 61   TSSCKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKC 120

Query: 509  ISQLELIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSST--VSLGAQYHSLEHSKQQKW 682
            + +LELI+KG++I AK+LD       SN EDSD S+ SS   V+    Y ++ + K Q+W
Sbjct: 121  VRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 180

Query: 683  TSLQLTEAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTS-MPDAHARANRIKGCK 859
            TSLQ  EA   L  FLK +   C NC AKNP+I+KPTFGW   + MP A  RAN I+GC 
Sbjct: 181  TSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCN 240

Query: 860  LKGSFVGEIEEDP---SSDIENADNTSPWGNGSDTSEITPINETKRKKNKRGQAHPELLK 1030
            L  +F G  EE     SSD++  +  S  G    T +        R+  K   A P   K
Sbjct: 241  LGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAA-----RRHQKGSGAVPSGFK 295

Query: 1031 ES---FSGSLLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILV 1201
            +    FSG LLPS+V+ +++ LWENEFELCSFI D+Q+         AG+S+FFL  +LV
Sbjct: 296  KQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQG---FGKKAGHSIFFLGAVLV 352

Query: 1202 PPIKFRPPSKGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVN 1381
            PPIKFR PSKGGDSVMEHPQTVLL KV++AN+ L NAY ++  ++K +V RW+ LQQSVN
Sbjct: 353  PPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKIIVTRWMNLQQSVN 412

Query: 1382 VSFDSKTMGQGQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGI 1561
            V FD K    GQR  ASGICQLLEKK+G+FRQK+MGKRVN+ACRSVISPDPYLAVNEIGI
Sbjct: 413  VLFDGKNAA-GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGI 471

Query: 1562 PPYFALRLTYPERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXX 1741
            PPYFALRLTYPERVTPWN+ KLRD+IING+EIHPGATHY DK S   L            
Sbjct: 472  PPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIAR 531

Query: 1742 XKLPSSRGVVTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGE 1921
             KL +SRG + QPGK  D +FEGKIV RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGE
Sbjct: 532  -KLDTSRGAIVQPGKDSDNEFEGKIVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGE 590

Query: 1922 KTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQ 2101
            KTLRMHYANCSTYNADFDGDEMNVHFPQDE+SRAEAYNIVNANNQYV PS G+P+R+LIQ
Sbjct: 591  KTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQ 650

Query: 2102 DHIISAVLLTKKDTFLSRDEYSQLLYXXXXXXXXXXXXXCKPGQKVCL 2245
            DHI+SA LLTKKDTFL+RDE+ QLLY              KPGQ+V +
Sbjct: 651  DHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLI 698


>ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citrus clementina]
            gi|557523327|gb|ESR34694.1| hypothetical protein
            CICLE_v10004132mg [Citrus clementina]
          Length = 1715

 Score =  780 bits (2014), Expect = 0.0
 Identities = 419/708 (59%), Positives = 498/708 (70%), Gaps = 11/708 (1%)
 Frame = +2

Query: 155  MSYRTEGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGVV-PAXXXXXXXXXXXXXX 331
            M+  TE  TES++AV F F TDEEVRK SF++ T   LL  V  P               
Sbjct: 1    MNQTTEVTTESVKAVWFSFLTDEEVRKQSFLKLTEPLLLDRVSRPLPGGLYDPILGPLDE 60

Query: 332  RAPCKSCGQSG-RCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENC 508
             + CK+CGQ    CPGH GH+ L++ VYNPLLFN+LY +L+R CFFCHHF+A R +VE C
Sbjct: 61   TSSCKTCGQRQFLCPGHFGHIDLVVSVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKC 120

Query: 509  ISQLELIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSST--VSLGAQYHSLEHSKQQKW 682
            + +LELI+KG++I AK+LD       SN EDSD S+ SS   V+    Y ++ + K Q+W
Sbjct: 121  VRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 180

Query: 683  TSLQLTEAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTS-MPDAHARANRIKGCK 859
            TSLQ  EA   L  FLK +   C NC AKNP+I+KPTFGW   + MP A  RAN I+GC 
Sbjct: 181  TSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCN 240

Query: 860  LKGSFVGEIEEDP---SSDIENADNTSPWGNGSDTSEITPINETKRKKNKRGQAHPELLK 1030
            L  +F G  EE     SSD++  +  S  G    T +        R+  K   A P   K
Sbjct: 241  LGETFSGGEEEKDLGTSSDVDAPETHSFNGAFPGTQDTAA-----RRHQKGSGAVPSGFK 295

Query: 1031 ES---FSGSLLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILV 1201
            +    FSG LLPS+V+ +++ LWENEFELCSFI D+Q+         AG+S+FFL  +LV
Sbjct: 296  KQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQG---FGKKAGHSIFFLGVVLV 352

Query: 1202 PPIKFRPPSKGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVN 1381
            PPIKFR PSKGGDSVMEHPQTVLL KV++AN+ L NAY ++  ++K +V RW+ LQQSVN
Sbjct: 353  PPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVN 412

Query: 1382 VSFDSKTMGQGQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGI 1561
            V FD K    GQR  ASGICQLLEKK+G+FRQK+MGKRVN+ACRSVISPDPYLAVNEIGI
Sbjct: 413  VLFDGKNAA-GQRDVASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGI 471

Query: 1562 PPYFALRLTYPERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXX 1741
            PPYFALRLTYPERVTPWN+ KLRD+IING+EIHPGATHY DK S   L            
Sbjct: 472  PPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGR 531

Query: 1742 XKLPSSRGVVTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGE 1921
             KL +SRG + QPGK  D +FEGK+V RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGE
Sbjct: 532  -KLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGE 590

Query: 1922 KTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQ 2101
            KTLRMHYANCSTYNADFDGDEMNVHFPQDE+SRAEAYNIVNANNQYV PS G+P+R+LIQ
Sbjct: 591  KTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQ 650

Query: 2102 DHIISAVLLTKKDTFLSRDEYSQLLYXXXXXXXXXXXXXCKPGQKVCL 2245
            DHI+SA LLTKKDTFL+RDE+ QLLY              KPGQ+V +
Sbjct: 651  DHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLI 698


>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            lycopersicum]
          Length = 1677

 Score =  770 bits (1989), Expect = 0.0
 Identities = 397/679 (58%), Positives = 497/679 (73%), Gaps = 9/679 (1%)
 Frame = +2

Query: 170  EGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGV-VPAXXXXXXXXXXXXXXRAPCK 346
            +GA+E++EAV F F TDEEVR+HS V+ TS +LL G+ +P                + CK
Sbjct: 3    QGASETVEAVHFSFMTDEEVRRHSVVKVTSPNLLDGLQLPVPNGLYDPAMGPLDHYSQCK 62

Query: 347  SCGQSGRCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENCISQLEL 526
             C QS  C GHCGH+ L+ PVYNPLLFNML+ +LQRTCF+C HFRA R++VE C+S+LEL
Sbjct: 63   FCSQSN-CSGHCGHIELVSPVYNPLLFNMLHNLLQRTCFYCFHFRASRAEVEKCVSELEL 121

Query: 527  IMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSSTVS-LGAQYHSLEHSKQQKWTSLQLTE 703
            I KG+V+GAK +D+L  +  +++E+S+GSH+S T+  L  + H  E++K+  W + Q TE
Sbjct: 122  IAKGDVVGAKMIDALSPDNSTDREESEGSHMSCTMDDLNVRDHC-EYNKRPSWDNFQFTE 180

Query: 704  AMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTSMPDAHARANRIK-GCKLKGSFVG 880
            AM+++D  LK K   C NC AKNPKI KP+FG F   + +   R N I  G +      G
Sbjct: 181  AMAVIDRILKTKTEKCSNCKAKNPKIRKPSFGRFHMDISNKQIRENYINSGRRFNLHDTG 240

Query: 881  EIEEDPSSDIENADNTSPWGNGSDTSEITPINETKRKKNKRGQAHP-----ELLKESFSG 1045
              EE+PS ++ NA  T P G    +  +T  +  +  K ++ Q        E  K+SFS 
Sbjct: 241  GSEENPSPEVVNA--TEPLGEAETSLCVTSTDGVENSKGRKRQGGDQSDVVEQQKDSFSV 298

Query: 1046 SLLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILVPPIKFRPP 1225
            + LPS+VR++++ LWENE  LC+F CDIQ    +     AG SMFFLD+ILVPP+KFRPP
Sbjct: 299  AHLPSQVRSIIEHLWENEAPLCTFFCDIQSQHRNTSGKVAGPSMFFLDSILVPPVKFRPP 358

Query: 1226 SKGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVNVSFDSKTM 1405
            +KGGDS+MEHP TVLLGKVI+AN+ LGNA+ +++G SK ++ R + LQQSVNV FDSKT 
Sbjct: 359  AKGGDSIMEHPHTVLLGKVIQANIALGNAHINRAGRSK-IISRLMDLQQSVNVLFDSKTA 417

Query: 1406 -GQGQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALR 1582
             G GQ+   SGICQ+LEKK+GIFRQKMMGKRVNFACRSVISPDPYL+VNEIGIPPYFA R
Sbjct: 418  SGPGQKDVGSGICQMLEKKEGIFRQKMMGKRVNFACRSVISPDPYLSVNEIGIPPYFASR 477

Query: 1583 LTYPERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKLPSSR 1762
            LTYPER+TPWN  K+RDA+ING E HPGA  +AD+ +   L             KLPSSR
Sbjct: 478  LTYPERLTPWNAVKMRDAVINGPENHPGAISFADRIATVKLPSNKKMRVAISR-KLPSSR 536

Query: 1763 GVVTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHY 1942
            G VTQ G++ + +FEGK+V RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHY
Sbjct: 537  GAVTQSGRNNEYEFEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHY 596

Query: 1943 ANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAV 2122
            ANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNAN QY+VP++G+ +R LIQDHI+ AV
Sbjct: 597  ANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAV 656

Query: 2123 LLTKKDTFLSRDEYSQLLY 2179
            +LT K+TFLS  E++QLLY
Sbjct: 657  ILTMKNTFLSLHEFNQLLY 675


>ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            tuberosum]
          Length = 1675

 Score =  769 bits (1986), Expect = 0.0
 Identities = 397/679 (58%), Positives = 497/679 (73%), Gaps = 9/679 (1%)
 Frame = +2

Query: 170  EGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGV-VPAXXXXXXXXXXXXXXRAPCK 346
            +GA+E++EAV F F TDEEVR+HS V+ TS +LL G+ +P                + CK
Sbjct: 3    QGASEAVEAVHFSFMTDEEVRRHSVVKVTSPNLLDGLQLPVPNGLYDPAMGPLDHYSQCK 62

Query: 347  SCGQSGRCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENCISQLEL 526
             C QS  C GHCGH+ L+ PVYNPLLFNML+ +LQRTCF+C HFRA R++VE C+S+LEL
Sbjct: 63   FCCQSN-CSGHCGHIELVSPVYNPLLFNMLHNLLQRTCFYCFHFRASRAEVEKCVSELEL 121

Query: 527  IMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSSTVS-LGAQYHSLEHSKQQKWTSLQLTE 703
            I KG+V+GAK +D+L  +  +++E+S+GSH+S  +  L  Q H  E++K+  W + Q TE
Sbjct: 122  IAKGDVVGAKMIDALSPDNSTDREESEGSHMSCAMDDLNMQDHR-EYNKRPSWDNFQFTE 180

Query: 704  AMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTSMPDAHARANRIK-GCKLKGSFVG 880
            AM+++D  LK K   C NC AKNPKI KP+FG F   + +   R N I  G +      G
Sbjct: 181  AMAVIDRILKTKTEKCSNCKAKNPKIRKPSFGRFHMDISNKQIRENYINSGRRFNLHDTG 240

Query: 881  EIEEDPSSDIENADNTSPWGNGSDTSEITPINETKRKKNKRGQAHP-----ELLKESFSG 1045
              EE+PS ++ NA  T P G    +  +T  +  +  K ++ Q        E  K+SFS 
Sbjct: 241  GSEENPSPEVVNA--TEPLGEAETSLCVTSTDGVENSKARKRQGGDQSDVVEQQKDSFSV 298

Query: 1046 SLLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILVPPIKFRPP 1225
            + LPS+VR++++ LWENE  LC+F CDIQ    +     AG SMFFLD+ILVPPIKFRPP
Sbjct: 299  AHLPSQVRSIIEHLWENEAPLCTFFCDIQSQHHNTSGKVAGPSMFFLDSILVPPIKFRPP 358

Query: 1226 SKGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVNVSFDSKTM 1405
            +KGGDS+MEHP TVLLGKV++AN+ LGNA+ +++G SK ++ R + LQQSVNV FDSKT 
Sbjct: 359  AKGGDSIMEHPHTVLLGKVVQANIALGNAHINRAGRSK-IISRLMDLQQSVNVLFDSKTA 417

Query: 1406 -GQGQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALR 1582
             G GQ+   SGICQ+LEKK+GIFRQKMMGKRVNFACRSVISPDPYL+VNEIGIPPYFALR
Sbjct: 418  SGPGQKDVGSGICQMLEKKEGIFRQKMMGKRVNFACRSVISPDPYLSVNEIGIPPYFALR 477

Query: 1583 LTYPERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKLPSSR 1762
            LTYPER+TPWN  K+RDA+ING E HPGA  +AD+ +   L             KLPSSR
Sbjct: 478  LTYPERLTPWNAVKMRDAVINGPENHPGAVSFADRIATVKLPSNKKMRVAISR-KLPSSR 536

Query: 1763 GVVTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHY 1942
            G VTQ G++ + +FEGK+V RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHY
Sbjct: 537  GAVTQSGRNNEYEFEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHY 596

Query: 1943 ANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAV 2122
            ANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNAN QY+VP++G+ +R LIQDHI+ AV
Sbjct: 597  ANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAV 656

Query: 2123 LLTKKDTFLSRDEYSQLLY 2179
            +LT K+TFL+  E++QLLY
Sbjct: 657  ILTMKNTFLTLHEFNQLLY 675


>emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]
          Length = 1350

 Score =  758 bits (1957), Expect = 0.0
 Identities = 439/767 (57%), Positives = 510/767 (66%), Gaps = 65/767 (8%)
 Frame = +2

Query: 143  TLSNMSYRTEGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGV---VPAXXXXXXXX 313
            +L  +S+  EG TE +EAV+F FFTDEEVRK+SF + TS  +L  V   VP         
Sbjct: 90   SLPLVSFDYEGTTEFVEAVKFSFFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALG 149

Query: 314  XXXXXXRAPCKSCGQSGRCPGHCGHVALILPVYNPL-LFNMLYAVLQRTCFFCHHFRAIR 490
                               PG+ G + LI+     L   N   +V         HF A  
Sbjct: 150  SIDE-------------NTPGN-GRILLIVKKREELQXVNHAASV---------HFIA-- 184

Query: 491  SKVENCISQLELIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVS--STVSLGAQYHSLEH 664
             +V+  +SQLELI KG+V+GAKNLDS+     S  EDSDGSHVS  STV+  A+ +   H
Sbjct: 185  -QVQKYVSQLELISKGDVVGAKNLDSISPSESSYPEDSDGSHVSCSSTVNSSARDNCSVH 243

Query: 665  SKQQKWTSLQLTEAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWF-KTSMPDAHARAN 841
             KQQ+WTSLQ  EAMS++DNFLK KH DCKNC AK+P++TKPTFGWF    + DA  RAN
Sbjct: 244  LKQQEWTSLQCIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTRAN 303

Query: 842  RIKGCKLKGSFVGEIEEDPSSDIENADNTSPWGNGSDTSE----ITPIN-----ETKRKK 994
             I+G KL+       EE  SS++EN ++  PWG+G DT E    I P +      TK  +
Sbjct: 304  VIRGSKLERPLSRVAEEKSSSEVENVNDMFPWGDGVDTDETHSSIAPTDGIQDTVTKXLE 363

Query: 995  NKRGQAHPELLKES--FSGSLLPSE----------------------------VRALLKL 1084
             K  QA  E +K+   FSG LLPSE                            VR +++ 
Sbjct: 364  RKGAQAPIEFIKQKSFFSGPLLPSEVCFLXALEHHHQLPWLMSVVVVNYVVTKVRDIMER 423

Query: 1085 LWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILVPPIKFRPPSKGGDSVMEHPQT 1264
            LWENE ELCSFI DI ++      + AGYSMFFL+TILVPPIKFRPPSKG  SVMEHPQT
Sbjct: 424  LWENEAELCSFISDILQERLGASGNKAGYSMFFLETILVPPIKFRPPSKGQISVMEHPQT 483

Query: 1265 VLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVNVSFDSKT-MGQGQRVGASGIC 1441
            VLLGKV++AN+ LGNA+ + S  SK ++ RW+ LQQS+NV FD KT  GQGQR   SGIC
Sbjct: 484  VLLGKVLQANIALGNAHANNSERSK-IISRWMDLQQSINVLFDGKTAAGQGQRDTGSGIC 542

Query: 1442 QLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNIG 1621
            QLLEKK+G+FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPE+VTPWN+ 
Sbjct: 543  QLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVV 602

Query: 1622 KLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKLPSSRGVVTQPGKSGDID 1801
            KLRDAIING EIHPGATHY DK S   L             KLPSSRGVV QPG+S D +
Sbjct: 603  KLRDAIINGPEIHPGATHYVDKLSTVKL-AVNKKMRISISRKLPSSRGVVAQPGRSSDNE 661

Query: 1802 FEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC---------- 1951
            FEGKIV RHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC          
Sbjct: 662  FEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCRVESEHISML 721

Query: 1952 --------STYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDH 2107
                    STYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQY+VPSRG+PIR LIQDH
Sbjct: 722  DLDDCSDSSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLIQDH 781

Query: 2108 IISAVLLTKKDTFLSRDEYSQLLYXXXXXXXXXXXXXCKPGQKVCLV 2248
            I+SAVLLTKKDTFL+R++Y+QLLY              KPG+KV ++
Sbjct: 782  IVSAVLLTKKDTFLTREQYNQLLYSSGLSSGSGSFIG-KPGKKVSVL 827


>gb|EXC04356.1| DNA-directed RNA polymerase I subunit rpa1 [Morus notabilis]
          Length = 1770

 Score =  751 bits (1939), Expect = 0.0
 Identities = 400/618 (64%), Positives = 465/618 (75%), Gaps = 5/618 (0%)
 Frame = +2

Query: 341  CKSCGQSG-RCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENCISQ 517
            CKSCGQ    CPGHCGH+ L+ P+YNPLLFN+LY++L+RTCF C+HFR    +V+ C+SQ
Sbjct: 6    CKSCGQRQLNCPGHCGHIDLVSPIYNPLLFNILYSILKRTCFSCYHFRRNPVEVKKCVSQ 65

Query: 518  LELIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSSTVSLGAQYHSLEHSKQQKWTSLQL 697
            LELI+KG+V  AK+L+S        +  S+ SH+      G++  S + S Q K TSLQL
Sbjct: 66   LELILKGDVARAKDLNS--------RPSSESSHLKDYGYRGSKDRSAKPSTQPKLTSLQL 117

Query: 698  TEAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTS-MPDAHARANRIKGCKLKGSF 874
            +EAMS+L+NFLKP H  C+NC A    IT+P FGW     +  A ARAN I+  KL+G F
Sbjct: 118  SEAMSVLNNFLKPNHTKCRNCEAHRLTITQPVFGWLNMERISGARARANVIRNSKLEGPF 177

Query: 875  VGEIEEDPSSDIENADNTSPWGNGSDTSEITPINETKRKKNKRGQAHPELLK--ESFSGS 1048
              + E  P  +I N D TSP    SD    TP   TK  ++K G+   E LK  E+FSG 
Sbjct: 178  -SDGESLPEEEIIN-DVTSP---DSDADTDTPATSTKSHRSKGGKVPREYLKQTETFSGG 232

Query: 1049 -LLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILVPPIKFRPP 1225
             +LPS+V+ +++LLWENE ELC++I DIQ      + + A +SMFFL+TILVPPIKFRPP
Sbjct: 233  PMLPSDVKEMIRLLWENEIELCTYITDIQHQG---IGNKADHSMFFLETILVPPIKFRPP 289

Query: 1226 SKGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVNVSFDSKTM 1405
            SKGGDSVMEHP TVLL KV++AN+ LGNA+ +K  ++K +V RW+ LQQSVNV FDSKT 
Sbjct: 290  SKGGDSVMEHPHTVLLNKVLQANIELGNAHVNKLEYTK-IVRRWMDLQQSVNVMFDSKT- 347

Query: 1406 GQGQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRL 1585
              GQR  A GICQLLEKK+GIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRL
Sbjct: 348  STGQRNVAPGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRL 407

Query: 1586 TYPERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKLPSSRG 1765
            TYPERVTPWN+ KLRDAIING E HPGATHY DK S   L             KLPSSRG
Sbjct: 408  TYPERVTPWNVVKLRDAIINGPETHPGATHYVDKLSTVKLPLNRKARISASR-KLPSSRG 466

Query: 1766 VVTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYA 1945
            VV Q GK+ D + EGKIV RHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYA
Sbjct: 467  VVMQNGKTYDYESEGKIVHRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYA 526

Query: 1946 NCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVL 2125
            NCSTYNADFDGDEMNVH PQDEISRAE YNI+NANNQYV P+ GEPIRALIQDHIISAVL
Sbjct: 527  NCSTYNADFDGDEMNVHLPQDEISRAEGYNILNANNQYVKPTSGEPIRALIQDHIISAVL 586

Query: 2126 LTKKDTFLSRDEYSQLLY 2179
            LTKKDTFL  DE++ LLY
Sbjct: 587  LTKKDTFLRWDEFNHLLY 604


>ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
            max]
          Length = 1651

 Score =  749 bits (1933), Expect = 0.0
 Identities = 403/699 (57%), Positives = 494/699 (70%), Gaps = 4/699 (0%)
 Frame = +2

Query: 155  MSYRTEGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGVV-PAXXXXXXXXXXXXXX 331
            M   TEGAT S+EAV F F TD+E+R+ S V+ TS  L+  ++ P               
Sbjct: 1    MVLTTEGATNSVEAVAFSFLTDDEIRRSSRVKITSPILVDFLLHPVPDGLYDAALGPFDD 60

Query: 332  RAPCKSCGQSGR-CPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENC 508
            ++ CKSCGQ+ + CPGH GH+ L+ PVYNPL+FN+L  +LQRTCF CHHFRA   +V+  
Sbjct: 61   KSLCKSCGQTSKHCPGHFGHIELVSPVYNPLMFNILSNILQRTCFTCHHFRAPSKEVDIR 120

Query: 509  ISQLELIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSSTVSLGAQYHSLEHSKQQKWTS 688
             SQLELIMKG++I AK L+S+ + G S    +    +       +Q +S E   +  WTS
Sbjct: 121  TSQLELIMKGDIIRAKRLESI-IPGKSVDSFNPDESIHPGDGDESQCYSAEQLGEN-WTS 178

Query: 689  LQLTEAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTSMPDA-HARANRIKGCKLK 865
            LQ +EAMS+L   L  KH  C+ CGAKNPKI+KPTFGWF  ++  A   RA+ I+  +  
Sbjct: 179  LQFSEAMSVLRKLLTKKHKKCQKCGAKNPKISKPTFGWFHMNVLSADETRADTIRSVE-- 236

Query: 866  GSFVGEIEEDPSSDIENADNTSPWGNGSDTSEITPINETKRKKNKRGQAHPELLKES-FS 1042
                        S+  N D +   G+ +D  +IT     KR K K+ +   +L +++  S
Sbjct: 237  ------------SETTNDDISLGGGDTTDVEDITSAGTAKRDKRKKEKLSYKLAEQNKLS 284

Query: 1043 GSLLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILVPPIKFRP 1222
            GSLLPS+V+ +L+LLWENE  LCS+I DIQ          AG+SMFFL+ I VPPIKFRP
Sbjct: 285  GSLLPSQVKGILELLWENEARLCSYINDIQDQG---FGKKAGHSMFFLENIFVPPIKFRP 341

Query: 1223 PSKGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVNVSFDSKT 1402
            P+KGGD+VMEHPQTVLL KV++ N+ LG+A+ +KS  SK V+ RW+ LQQSVN+ FD+KT
Sbjct: 342  PTKGGDNVMEHPQTVLLTKVLQCNISLGDAHLNKSDPSK-VLSRWMDLQQSVNMLFDNKT 400

Query: 1403 MGQGQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALR 1582
               G+R  A+GICQLLEKK+GIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALR
Sbjct: 401  -ASGKRDVATGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALR 459

Query: 1583 LTYPERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKLPSSR 1762
            L+YPERVTPWN+ KLR+AI+NG E HPGATHYADK S+  L             KLP+SR
Sbjct: 460  LSYPERVTPWNVVKLRNAILNGPESHPGATHYADKVSIVKLPPKGKLLSLTSR-KLPTSR 518

Query: 1763 GVVTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHY 1942
            GV+   GK  D +FEGK+V RHL+DGD+VLVNRQPTLHKPSIMAH+VRVLKGEKT+RMHY
Sbjct: 519  GVILHQGKISDHEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHIVRVLKGEKTVRMHY 578

Query: 1943 ANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAV 2122
            ANCSTYNADFDGDE+NVHFPQDEISRAEAYNIVNANNQYV P+ G+PIRALIQDHI+SA 
Sbjct: 579  ANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAA 638

Query: 2123 LLTKKDTFLSRDEYSQLLYXXXXXXXXXXXXXCKPGQKV 2239
            LLTKKDTFLS +E++QLLY              K GQKV
Sbjct: 639  LLTKKDTFLSYEEFNQLLYSSGVSMAGLGSFYGKHGQKV 677


>ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1650

 Score =  739 bits (1907), Expect = 0.0
 Identities = 407/703 (57%), Positives = 489/703 (69%), Gaps = 8/703 (1%)
 Frame = +2

Query: 155  MSYRTEGATESIEAVRFGFFTDEEVRKHSFVQSTSA---DLLHGVVPAXXXXXXXXXXXX 325
            M+  TEGAT S++AV F F TDEE+ K S V+ T+    D LH   P             
Sbjct: 1    MALATEGATNSVKAVAFSFLTDEEILKSSRVKITNPILLDTLHS--PVAGGLYDPALGPF 58

Query: 326  XXRAPCKSCGQSG-RCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVE 502
              ++PC+SCGQ+   CPGH GH+ L+ PVYNPL+F+ML  VL+RTCF CHHF+A R++VE
Sbjct: 59   HEKSPCQSCGQNSYHCPGHFGHIELVSPVYNPLMFSMLSNVLRRTCFSCHHFQASRNEVE 118

Query: 503  NCISQLELIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSSTVSLGAQYHSLEHSKQQKW 682
               +QLELIMKGN+  AKNLD++ L+  ++  D + S  SS   LG           + W
Sbjct: 119  LRANQLELIMKGNIAKAKNLDAINLDESADLSDGNDSQCSSDEQLG-----------ENW 167

Query: 683  TSLQLTEAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKT-SMPDAHARANRIKGCK 859
            TSLQ +EAMS+L  FLK +   C+NCG  NPKITKPTFGWF   ++  A ARAN I G  
Sbjct: 168  TSLQFSEAMSVLRKFLKKEFRKCQNCGNINPKITKPTFGWFHVKALSAAQARANVISG-- 225

Query: 860  LKGSFVGEIEEDPSSDIENADNTSPWGNGSDTSEITP---INETKRKKNKRGQAHPELLK 1030
            +  S   EI  D  S + N D T       D  +IT     N   +++NK  + H +L  
Sbjct: 226  IDASLASEIIHDDIS-LGNGDTT-------DVEDITSGDTANSNAKRQNKLAR-HNKL-- 274

Query: 1031 ESFSGSLLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILVPPI 1210
               SGSLLPS+V+ +L+LLWENE  LC +I DIQ          AG+SMFFLD I VPPI
Sbjct: 275  ---SGSLLPSQVQGILELLWENEARLCLYISDIQGQG---FGKKAGHSMFFLDNIYVPPI 328

Query: 1211 KFRPPSKGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVNVSF 1390
            KFRPP+KG D V EH QTVLL +V+E+N+ LG A+ +KS  S  V+ RW+ LQ+SVN+ F
Sbjct: 329  KFRPPTKGDDKVSEHAQTVLLTRVLESNISLGQAHLNKSDAS-VVLRRWMDLQRSVNLLF 387

Query: 1391 DSKTMGQGQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPY 1570
            D+KT   GQ+   +GICQLLEKK+GIFRQKMMGKRVN+ACRSVISPDPYLAVNEIGIPPY
Sbjct: 388  DNKT-ASGQKDLVTGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPY 446

Query: 1571 FALRLTYPERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKL 1750
            FALRLTYPERVTPWN+ +LR+AI+NG E HPGAT YADK+S  L              KL
Sbjct: 447  FALRLTYPERVTPWNVVELRNAILNGPETHPGATLYADKTST-LKLPLDRRSRSLTSRKL 505

Query: 1751 PSSRGVVTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTL 1930
             SSRGV+   GK  D +FEGK+V RHL+DGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT+
Sbjct: 506  QSSRGVIMHNGKIHDNEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTV 565

Query: 1931 RMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHI 2110
            RMHYANCSTYNADFDGDE+NVHFPQDEISRAEAYNIVNANNQYV P+ G+PIRALIQDHI
Sbjct: 566  RMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHI 625

Query: 2111 ISAVLLTKKDTFLSRDEYSQLLYXXXXXXXXXXXXXCKPGQKV 2239
            +SA LLTKKDTFLS +E++QLLY              KPGQK+
Sbjct: 626  VSAALLTKKDTFLSCEEFNQLLYSSGVSMTGMGPFPGKPGQKI 668


>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
            sativus]
          Length = 1650

 Score =  734 bits (1895), Expect = 0.0
 Identities = 404/701 (57%), Positives = 482/701 (68%), Gaps = 6/701 (0%)
 Frame = +2

Query: 155  MSYRTEGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGVV-PAXXXXXXXXXXXXXX 331
            M+  TEGA+ES++ V F F T+EEVRK S V+ T+  LL G+  P               
Sbjct: 1    MAQTTEGASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDE 60

Query: 332  RAPCKSCGQSG-RCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENC 508
               CKSCGQ    CPGHCGH+ L+ PVYNPLLF +L+  L+ TCF CHHFRA  S VENC
Sbjct: 61   TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENC 120

Query: 509  ISQLELIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSSTVSLGAQYHSLEHSKQQKWTS 688
             + LELI+ G +  AK L+  ++   S  + S   +           +  ++ + + WTS
Sbjct: 121  KTLLELILDGEIAKAKELEEEWMNSKSRTKSSHSMYT----------YERKNGQPETWTS 170

Query: 689  LQLTEAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTS-MPDAHARANRIKGCKLK 865
            LQ +EA+S++  FLKPK  +CK CGAK+PKITKPTFGWF    +     RAN I+  K  
Sbjct: 171  LQFSEAISVVTKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPV 230

Query: 866  GSFVGEIEEDPSSDIENADNTSPWGNGSDTSEITPINETKRKKNKRGQAHPELLKESFSG 1045
                G    +  S +E  + T+      D  +++P  E   +KN              SG
Sbjct: 231  SVSSGA---EGVSSLE--EETTTEATVEDFEDVSP--EVFMQKNFS------------SG 271

Query: 1046 SLLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILVPPIKFRPP 1225
             LLPSEV+ +LK LW+NE  LCSFI DI +       + AG+SMFFL+++LVPPIKFRPP
Sbjct: 272  HLLPSEVKDILKRLWKNEALLCSFISDISQQGHG---NKAGHSMFFLESVLVPPIKFRPP 328

Query: 1226 SKGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVNVSFDSKTM 1405
            +KGGDSVMEHPQTVLL KV+++N+ LGN + +KS HSK +V  W+ LQQS+N+ FDSK+ 
Sbjct: 329  AKGGDSVMEHPQTVLLNKVLQSNISLGNGHANKSEHSK-IVRLWMDLQQSINILFDSKSA 387

Query: 1406 -GQGQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALR 1582
             G G+   + GICQLLEKK+G+FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALR
Sbjct: 388  AGPGKNDASLGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALR 447

Query: 1583 LTYPERVTPWNIGKLRDAIINGSEIHPGATHYADK-SSVDLLXXXXXXXXXXXXXKLPSS 1759
            LTYPERVT WN+ KLR+AIING E HPGATHY DK ++V L              KLPSS
Sbjct: 448  LTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSS 507

Query: 1760 RGVVTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMH 1939
            RGVV   G   D +FEGKIV+RHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKT+RMH
Sbjct: 508  RGVVVDQG-CDDYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMH 566

Query: 1940 YANCS-TYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIIS 2116
            YANCS TYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYV P+ GEPIRALIQDHIIS
Sbjct: 567  YANCSITYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIIS 626

Query: 2117 AVLLTKKDTFLSRDEYSQLLYXXXXXXXXXXXXXCKPGQKV 2239
            AVLLTKKDTFL+ DE+SQLLY              KPGQK+
Sbjct: 627  AVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKI 667


>ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phaseolus vulgaris]
            gi|561018822|gb|ESW17626.1| hypothetical protein
            PHAVU_007G255400g [Phaseolus vulgaris]
          Length = 1637

 Score =  734 bits (1894), Expect = 0.0
 Identities = 392/699 (56%), Positives = 485/699 (69%), Gaps = 4/699 (0%)
 Frame = +2

Query: 167  TEGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGVV-PAXXXXXXXXXXXXXXRAPC 343
            TEG T S++AV F F T +E+ + S V+ T+  LL+ ++ P               ++ C
Sbjct: 5    TEGVTNSVKAVGFSFLTSDELLRSSRVKITNPILLNPLLNPVSGGLYDPALGPLDDKSLC 64

Query: 344  KSCGQSGR-CPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENCISQL 520
            KSCGQ  + CPGH GH+ L+ PVYNPL+FN+L ++LQRTCF CHHF A R +VE   SQ 
Sbjct: 65   KSCGQGSKHCPGHFGHIELVSPVYNPLMFNILSSILQRTCFSCHHFHASRKEVEMRTSQF 124

Query: 521  ELIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSSTVSLGAQYHSLEHSKQQKWTSLQLT 700
            ELIMKG++I AK+LDS+  +  ++  D D S       LG           + W+SLQ +
Sbjct: 125  ELIMKGDIIRAKSLDSIISDESNHSGDGDESQ--GVEQLG-----------ENWSSLQFS 171

Query: 701  EAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTS-MPDAHARANRIKGCKLKGSFV 877
            EAMS+L  FL  K+  C+NCG  NP+I+KPTFGWF  + + D  ARAN ++  +      
Sbjct: 172  EAMSVLRKFLLRKYKKCQNCGVVNPRISKPTFGWFHMNVLSDDEARANTMRALE------ 225

Query: 878  GEIEEDPSSDIENADNTSPWGNGSDTSEITPINETKRKKNKRGQAHPELLKES-FSGSLL 1054
                    S+  N D +   G  ++  +IT     KR K K+G+   +L  ++  SGSLL
Sbjct: 226  --------SETINDDMSLGGGETTEEEDITSTGTAKRDKRKKGKLSSKLAAQNKLSGSLL 277

Query: 1055 PSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILVPPIKFRPPSKG 1234
            PS+V+ +L+LLWENE  LCS+I DIQ          AG+SMFFL+ I VPPIKFRPP+KG
Sbjct: 278  PSQVKGILELLWENEARLCSYISDIQDQG---FGKKAGHSMFFLENIFVPPIKFRPPTKG 334

Query: 1235 GDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVNVSFDSKTMGQG 1414
            GD VMEHPQTVLL KV++ N+ LG+A+ +K   SK V+ RW+ LQQSVN+ FD+KT GQG
Sbjct: 335  GDDVMEHPQTVLLTKVLQGNISLGDAHINKLDPSK-VLSRWMDLQQSVNLLFDNKTSGQG 393

Query: 1415 QRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYP 1594
            +   A+GICQLLEKK+GIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRL+YP
Sbjct: 394  EV--AAGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLSYP 451

Query: 1595 ERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKLPSSRGVVT 1774
            ERVTPWN+  LR+AI+NG + HPGATHY D+ +   L             KLPSSRGV+ 
Sbjct: 452  ERVTPWNVTMLRNAILNGPQSHPGATHYTDQQATVKLPPNGKLLSFISR-KLPSSRGVIL 510

Query: 1775 QPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS 1954
              GK  D +FEGKIV RHL+DGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANCS
Sbjct: 511  DHGKISDQEFEGKIVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCS 570

Query: 1955 TYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLLTK 2134
            TYNADFDGDE+NVHFPQDEISRAEAYNIVNANNQYV P+ G+PIRALIQDHI+SA LLTK
Sbjct: 571  TYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTK 630

Query: 2135 KDTFLSRDEYSQLLYXXXXXXXXXXXXXCKPGQKVCLVS 2251
            KDTF++ + + QLLY              K GQKV + +
Sbjct: 631  KDTFITYEVFIQLLYSSGVSMTGLGSFSGKHGQKVFMTN 669


>ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1660

 Score =  731 bits (1886), Expect = 0.0
 Identities = 399/701 (56%), Positives = 484/701 (69%), Gaps = 6/701 (0%)
 Frame = +2

Query: 155  MSYRTEGATESIEAVRFGFFTDEEVRKHSFVQSTSA---DLLHGVVPAXXXXXXXXXXXX 325
            M+  TEGAT S++AV F F TDEE+ K S V+ T+    D LH   P             
Sbjct: 1    MALATEGATNSVKAVAFSFLTDEEILKSSRVKITNPILLDTLHS--PVAGGLYDPALGPF 58

Query: 326  XXRAPCKSCGQSG-RCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVE 502
              ++PC+SCGQ+   CPGH GH+ L+ P YNPL+F+ML  VL+RTCF CHHF+A R +VE
Sbjct: 59   HEKSPCQSCGQNSYHCPGHFGHIELVSPAYNPLMFSMLSNVLRRTCFSCHHFQASRKEVE 118

Query: 503  NCISQLELIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSSTVSLGAQYHSLEHSKQQKW 682
               +QLELIMKGN+  AKNLD + L+  ++  D D S  SS   LG           + W
Sbjct: 119  LRANQLELIMKGNIAKAKNLDEINLDESADLCDGDDSQCSSAEQLG-----------ENW 167

Query: 683  TSLQLTEAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKT-SMPDAHARANRIKGCK 859
            TSLQ +EAMS+L  FLK ++  C+NCG  NPKIT PTFGWF   ++  A ARAN I G  
Sbjct: 168  TSLQFSEAMSVLRKFLKKEYRKCQNCGYINPKITIPTFGWFHVKALSAAQARANVISGND 227

Query: 860  LKGSFVGEIEEDPSSDIENADNTSPWGNGSDTSEITPINETKRKKNKRGQAHPELLKESF 1039
            +  S   EI  D  S + N D T       D  +IT   +      KR     ++   + 
Sbjct: 228  V--SLASEIIHDDIS-LGNGDTT-------DVEDITS-GDIANSNAKRHNKEKQISSHTL 276

Query: 1040 SGSLLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILVPPIKFR 1219
            +GSLLPS+V+ +L+LLWEN+  LC +I DIQ      +   AG+SMFFL+ I VPPIKFR
Sbjct: 277  AGSLLPSQVQRILELLWENDARLCLYISDIQGLG---IGKKAGHSMFFLENIYVPPIKFR 333

Query: 1220 PPSKGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVNVSFDSK 1399
            PP+KG D V EH QTVLL +V+E+N+ LG A+ +KS  S  V+ RW+ LQ+SVN+ FD+K
Sbjct: 334  PPTKGDDKVSEHAQTVLLTRVLESNISLGQAHLNKSDAS-VVLRRWMDLQRSVNLLFDNK 392

Query: 1400 TM-GQGQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFA 1576
            T  G+ Q+   +GICQLLEKK+GIFRQKMMGKRVN+ACRSVISPDPYLAVNEIGIPPYFA
Sbjct: 393  TASGESQKDLVTGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 452

Query: 1577 LRLTYPERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKLPS 1756
            LRLTYPERVTPWN+ +LR+AI+NG E HPGAT YADK+S  L              +L S
Sbjct: 453  LRLTYPERVTPWNVVELRNAILNGPETHPGATLYADKTST-LKLPLDRRSRSLTSRRLQS 511

Query: 1757 SRGVVTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRM 1936
            SRGV+   GK  D +FEGK+V RHL+DGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT+RM
Sbjct: 512  SRGVIMHNGKIHDNEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTVRM 571

Query: 1937 HYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIIS 2116
            HYANCSTYNADFDGDE+NVHFPQDEISRAEAYNIVNANNQYV P+ G+PIRALIQDHI+S
Sbjct: 572  HYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVS 631

Query: 2117 AVLLTKKDTFLSRDEYSQLLYXXXXXXXXXXXXXCKPGQKV 2239
            A LLTKKDTFLS +E++QLLY              KPGQK+
Sbjct: 632  AALLTKKDTFLSCEEFNQLLYSSGVSMTGMGPFPGKPGQKI 672


>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Cucumis sativus]
          Length = 1652

 Score =  729 bits (1881), Expect = 0.0
 Identities = 401/695 (57%), Positives = 478/695 (68%), Gaps = 6/695 (0%)
 Frame = +2

Query: 173  GATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGVV-PAXXXXXXXXXXXXXXRAPCKS 349
            GA+ES++ V F F T+EEVRK S V+ T+  LL G+  P                  CKS
Sbjct: 13   GASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDETTLCKS 72

Query: 350  CGQSG-RCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENCISQLEL 526
            CGQ    CPGHCGH+ L+ PVYNPLLF +L+  L+ TCF CHHFRA  S VENC + LEL
Sbjct: 73   CGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENCKTLLEL 132

Query: 527  IMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSSTVSLGAQYHSLEHSKQQKWTSLQLTEA 706
            I+ G +  AK L+  ++   S  + S   +           +  ++ + + WTSLQ +EA
Sbjct: 133  ILDGEIAKAKELEEEWMNSKSRTKSSHSMYT----------YERKNGQPETWTSLQFSEA 182

Query: 707  MSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTS-MPDAHARANRIKGCKLKGSFVGE 883
            +S++  FLKPK  +CK CGAK+PKITKPTFGWF    +     RAN I+  K      G 
Sbjct: 183  ISVVTKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGA 242

Query: 884  IEEDPSSDIENADNTSPWGNGSDTSEITPINETKRKKNKRGQAHPELLKESFSGSLLPSE 1063
               +  S +E  + T+      D  +++P  E   +KN              SG LLPSE
Sbjct: 243  ---EGVSSLE--EETTTEATVEDFEDVSP--EVFMQKNFS------------SGHLLPSE 283

Query: 1064 VRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILVPPIKFRPPSKGGDS 1243
            V+ +LK LW+NE  LCSFI DI +       + AG+SMFFL+++LVPPIKFRPP+KGGDS
Sbjct: 284  VKDILKRLWKNEALLCSFISDISQQGHG---NKAGHSMFFLESVLVPPIKFRPPAKGGDS 340

Query: 1244 VMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVNVSFDSKTM-GQGQR 1420
            VMEHPQTVLL KV+++N+ LGN + +KS HSK +V  W+ LQQS+N+ FDSK+  G G+ 
Sbjct: 341  VMEHPQTVLLNKVLQSNISLGNGHANKSEHSK-IVRLWMDLQQSINILFDSKSAAGPGKN 399

Query: 1421 VGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPER 1600
              + GICQLLEKK+G+FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPER
Sbjct: 400  DASLGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPER 459

Query: 1601 VTPWNIGKLRDAIINGSEIHPGATHYADK-SSVDLLXXXXXXXXXXXXXKLPSSRGVVTQ 1777
            VT WN+ KLR+AIING E HPGATHY DK ++V L              KLPSSRGVV  
Sbjct: 460  VTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVD 519

Query: 1778 PGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS- 1954
             G   D +FEGKIV+RHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANCS 
Sbjct: 520  QG-CDDYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSI 578

Query: 1955 TYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLLTK 2134
            TYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYV P+ GEPIRALIQDHIISAVLLTK
Sbjct: 579  TYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTK 638

Query: 2135 KDTFLSRDEYSQLLYXXXXXXXXXXXXXCKPGQKV 2239
            KDTFL+ DE+SQLLY              KPGQK+
Sbjct: 639  KDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKI 673


>ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Capsella rubella]
            gi|482559195|gb|EOA23386.1| hypothetical protein
            CARUB_v10016563mg [Capsella rubella]
          Length = 1651

 Score =  727 bits (1876), Expect = 0.0
 Identities = 386/697 (55%), Positives = 483/697 (69%), Gaps = 4/697 (0%)
 Frame = +2

Query: 167  TEGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGVV-PAXXXXXXXXXXXXXXRAPC 343
            TEGA++ +E+VRF F T+++VRKHSF++ TS  LL  V  P               +  C
Sbjct: 7    TEGASQVVESVRFSFMTEQDVRKHSFLKVTSPILLDNVERPVPGGLYDPVMGPLNDKEAC 66

Query: 344  KSCGQSGR-CPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENCISQL 520
            KSCGQ    CPGHCGH+ L+ P+Y+PLLF++LY  LQRTCFFCHHF A  + V+ C+SQL
Sbjct: 67   KSCGQLRLGCPGHCGHIELVYPIYHPLLFSLLYNFLQRTCFFCHHFMAKPNDVKKCVSQL 126

Query: 521  ELIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSSTVSLGAQYHSLEHSKQQKWTSLQLT 700
            +LIMKG+++ AK L+       +N ED + S  S   +  +Q       + Q+WTSLQ  
Sbjct: 127  KLIMKGDIVSAKQLEVKSDSTSTNSEDIEVSCESGVTNDSSQECEDPDMEDQRWTSLQFA 186

Query: 701  EAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTSMPDAHA-RANRIKGCKLKGSFV 877
            E  +++ NF+K    +C  C AKNPK+ KP FGW +    +A A  AN I+G K+K S  
Sbjct: 187  EVTAVMKNFMKLTSKECNKCKAKNPKLEKPMFGWVRMKGMNASAVGANLIRGLKVKKS-- 244

Query: 878  GEIEEDPSSDIENADNTSPWGNGSDT-SEITPINETKRKKNKRGQAHPELLKESFSGSLL 1054
                   +S +EN D++     G D  SE    ++ KR+K+       E  K++    LL
Sbjct: 245  -------TSSVENPDDS-----GIDALSEAEDSDKEKREKSTEIAKEFEKQKDT-KRDLL 291

Query: 1055 PSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILVPPIKFRPPSKG 1234
            PSEVRA+LK LWENE E CSFI D+ +  S+ +     YSMFFL+++LVPPIKFRPP+KG
Sbjct: 292  PSEVRAILKNLWENEHEYCSFIGDLWQSGSEKID----YSMFFLESVLVPPIKFRPPTKG 347

Query: 1235 GDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVNVSFDSKTMGQG 1414
            GDSVMEHPQTV L KV+ +N+ LGNA  +K   SK V+ RW+ LQ+SVNV FDSK     
Sbjct: 348  GDSVMEHPQTVGLNKVLLSNITLGNACTNKLDQSK-VISRWMNLQESVNVLFDSKAASVQ 406

Query: 1415 QRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYP 1594
             +   SGICQLLEKK+G+FRQKMMGKRVN ACRSVISPDPY+AVNEIGIPP FAL+L YP
Sbjct: 407  SQKDGSGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNEIGIPPCFALKLIYP 466

Query: 1595 ERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKLPSSRGVVT 1774
            ERVTPWN+ KLR+AIING ++HPGATHY+DK S   L             KL SSRG  T
Sbjct: 467  ERVTPWNVEKLREAIINGPDVHPGATHYSDKLSTVKLPSSVKERTAIAN-KLLSSRGATT 525

Query: 1775 QPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS 1954
            + GK+ DI+FEGK+V R ++DGD+VLVNRQPTLHKPS+MAH+VRVLKGEKTLR+HYANCS
Sbjct: 526  ELGKTCDINFEGKVVYRQMRDGDVVLVNRQPTLHKPSLMAHIVRVLKGEKTLRLHYANCS 585

Query: 1955 TYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLLTK 2134
            TYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQY  PS G+P+RALIQDHI+S+VLLTK
Sbjct: 586  TYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGDPLRALIQDHIVSSVLLTK 645

Query: 2135 KDTFLSRDEYSQLLYXXXXXXXXXXXXXCKPGQKVCL 2245
            +DTFL +D ++QLL+              K G+KV +
Sbjct: 646  RDTFLDKDLFNQLLFSSGVTDMVLSSFSGKSGKKVTI 682


>gb|EYU39881.1| hypothetical protein MIMGU_mgv1a000122mg [Mimulus guttatus]
          Length = 1719

 Score =  716 bits (1849), Expect = 0.0
 Identities = 386/699 (55%), Positives = 477/699 (68%), Gaps = 28/699 (4%)
 Frame = +2

Query: 167  TEGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGV-VPAXXXXXXXXXXXXXXRAPC 343
            TE  TE +EAVRFGFFTDEE RKHS V+ T+ +L+  +  P               R+ C
Sbjct: 4    TECTTEVVEAVRFGFFTDEEARKHSLVKITNPNLVDILGKPCPGGLYDPAMGSLDERSIC 63

Query: 344  KSCGQSGR-CPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENCISQL 520
            +SCGQ    C GHCGH+ L+   YNPLLFN L  +L +TC +C  F +   + EN +SQL
Sbjct: 64   ESCGQRAYLCNGHCGHIELVSVAYNPLLFNTLSNILNKTCLYCLQFISSAEETENFVSQL 123

Query: 521  ELIMKGNVIGAKNL----------DSLYL---EGHSNQEDSDGSHVSSTVSLGAQYHSLE 661
            ELI KG++ GAK L            +++   +    +EDS GSH+S +  L    +  +
Sbjct: 124  ELIRKGDLAGAKKLALGSSFKGKKKMVFVSTDDDTDEREDSQGSHMSHSAVLSDGENHFK 183

Query: 662  HSKQQKWTSLQLTEAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTS-MPDAHA-R 835
              +Q  W+S QL EA+S+++ +L+ K   C NC  + PKI+KPTFGWF+      A A R
Sbjct: 184  DDEQASWSSAQLAEAISVMNEYLRRKGKKCMNCEMRCPKISKPTFGWFQVGGATSAKAIR 243

Query: 836  ANRIKGCKLKGSFVGEIEEDPSSDIENADNTSPWGNGSDTSE----ITPINETKRKKNKR 1003
             N I+  KL  S     E++ SS++ NA + S   + S+T E    I   N TK+ K K 
Sbjct: 244  ENVIRSHKLDESDSDGGEDNFSSEVVNAGDHS-MNDDSETVESNSFIATSNSTKKSKKKG 302

Query: 1004 GQAHPELLKES------FSGSLLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNA 1165
                 +L   S       SG LLPS+VR +LKLLWE E   CS+I DIQR       +  
Sbjct: 303  VNRAKKLNPGSGDPNFYLSGPLLPSQVRDILKLLWEKEASFCSYISDIQRQKCKPFGNKT 362

Query: 1166 GYSMFFLDTILVPPIKFRPPSKGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTV 1345
            GYSMFFL+T+LVPPI+FRPP+KGGDSVMEHPQTVLLGKV+++N+ LGNA+ +       +
Sbjct: 363  GYSMFFLETVLVPPIRFRPPAKGGDSVMEHPQTVLLGKVLQSNIALGNAHVN--AEKSKI 420

Query: 1346 VDRWIALQQSVNVSFDSKTMGQ-GQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVI 1522
            + RW+ LQQS+NV FDSKT     Q+   +GICQ LEKK+GIFRQKMMGKRVNFACRSVI
Sbjct: 421  ISRWMELQQSINVYFDSKTATSLAQKDSIAGICQFLEKKEGIFRQKMMGKRVNFACRSVI 480

Query: 1523 SPDPYLAVNEIGIPPYFALRLTYPERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDL 1702
            SPDPYLAVNEIGIPPYFAL+LTYPERVTPWN  KLR A++NG +IHPGAT Y D  ++  
Sbjct: 481  SPDPYLAVNEIGIPPYFALKLTYPERVTPWNAAKLRGAVVNGPDIHPGATTYVDSVTIVK 540

Query: 1703 LXXXXXXXXXXXXXKLPSSRGVVTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKP 1882
            L             KLPSSRGVVTQ GK  D++FEGK V RHLQDGDIVLVNRQPTLHKP
Sbjct: 541  LPPSQKMRVAISR-KLPSSRGVVTQSGKFDDLEFEGKTVHRHLQDGDIVLVNRQPTLHKP 599

Query: 1883 SIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYV 2062
            SIMAHVVRVL GE+TLRMHYANCS+YNADFDGDE+NVHFPQDEISRAEAYNIVNAN QY+
Sbjct: 600  SIMAHVVRVLHGERTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYI 659

Query: 2063 VPSRGEPIRALIQDHIISAVLLTKKDTFLSRDEYSQLLY 2179
            VP++G+ +R LIQDHI+ AVLLT K+TF++R E++QLLY
Sbjct: 660  VPTKGDTVRGLIQDHIVGAVLLTMKNTFVNRSEFNQLLY 698


>ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana]
            gi|4678281|emb|CAB41189.1| DNA-directed RNA polymerase I
            190K chain-like protein [Arabidopsis thaliana]
            gi|332646163|gb|AEE79684.1| nuclear RNA polymerase A1
            [Arabidopsis thaliana]
          Length = 1670

 Score =  709 bits (1830), Expect = 0.0
 Identities = 382/697 (54%), Positives = 473/697 (67%), Gaps = 8/697 (1%)
 Frame = +2

Query: 173  GATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGVV--PAXXXXXXXXXXXXXXRAPCK 346
            GA++ +E+VRF F T+++VRKHSF++ TS  +LH  V  P               +  C 
Sbjct: 22   GASQVVESVRFSFMTEQDVRKHSFLKVTSP-ILHDNVGNPFPGGLYDLKLGPKDDKQACN 80

Query: 347  SCGQSG-RCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENCISQLE 523
            SCGQ    CPGHCGH+ L+ P+Y+PLLFN+L+  LQR CFFCHHF A    VE  +SQL+
Sbjct: 81   SCGQLKLACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMAKPEDVERAVSQLK 140

Query: 524  LIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSSTVSLGAQYHSLEHSKQQKWTSLQLTE 703
            LI+KG+++ AK L+S       + ++S  S V++  S   +   +E    Q+WTSLQ  E
Sbjct: 141  LIIKGDIVSAKQLESNTPTKSKSSDESCESVVTTDSSEECEDSDVE---DQRWTSLQFAE 197

Query: 704  AMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKT-SMPDAHARANRIKGCKLKGSFVG 880
              ++L NF++     C  C   NPK+ KP FGW +  +M D+   AN I+G KLK S   
Sbjct: 198  VTAVLKNFMRLSSKSCSRCKGINPKLEKPMFGWVRMRAMKDSDVGANVIRGLKLKKS--- 254

Query: 881  EIEEDPSSDIENADNTSPWGNGSDTSEITPINET----KRKKNKRGQAHPELLKESFSGS 1048
                  +S +EN D       G D S I  ++E     K  + K  +   E  + +    
Sbjct: 255  ------TSSVENPD-------GFDDSGIDALSEVEDGDKETREKSTEVAAEFEEHNSKRD 301

Query: 1049 LLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILVPPIKFRPPS 1228
            LLPSEVR +LK LW+NE E CSFI D+ +  S+ +     YSMFFL+++LVPP KFRPP+
Sbjct: 302  LLPSEVRNILKHLWQNEHEFCSFIGDLWQSGSEKID----YSMFFLESVLVPPTKFRPPT 357

Query: 1229 KGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVNVSFDSKTMG 1408
             GGDSVMEHPQTV L KVIE+N  LGNA  +K   SK V+ RW  LQ+SVNV FDSKT  
Sbjct: 358  TGGDSVMEHPQTVGLNKVIESNNILGNACTNKLDQSK-VIFRWRNLQESVNVLFDSKTAT 416

Query: 1409 QGQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLT 1588
               +  +SGICQLLEKK+G+FRQKMMGKRVN ACRSVISPDPY+AVN+IGIPP FAL+LT
Sbjct: 417  VQSQRDSSGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIGIPPCFALKLT 476

Query: 1589 YPERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXXKLPSSRGV 1768
            YPERVTPWN+ KLR+AIING +IHPGATHY+DKSS   L             KL SSRG 
Sbjct: 477  YPERVTPWNVEKLREAIINGPDIHPGATHYSDKSSTMKLPSTEKARRAIAR-KLLSSRGA 535

Query: 1769 VTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYAN 1948
             T+ GK+ DI+FEGK V RH++DGDIVLVNRQPTLHKPS+MAH VRVLKGEKTLR+HYAN
Sbjct: 536  TTELGKTCDINFEGKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYAN 595

Query: 1949 CSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLL 2128
            CSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQY  PS GEP+RALIQDHI+S+VLL
Sbjct: 596  CSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLL 655

Query: 2129 TKKDTFLSRDEYSQLLYXXXXXXXXXXXXXCKPGQKV 2239
            TK+DTFL +D ++QLL+              + G+KV
Sbjct: 656  TKRDTFLDKDHFNQLLFSSGVTDMVLSTFSGRSGKKV 692