BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia22_contig00010088
         (1468 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        236   2e-59
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   234   1e-58
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     226   3e-56
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   226   3e-56
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g...   222   4e-55
gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subc...   217   9e-54
gb|ABA98861.1| retrotransposon protein, putative, Ty1-copia subc...   217   9e-54
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   217   9e-54
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   217   9e-54
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                216   3e-53
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   215   4e-53
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              214   8e-53
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              213   2e-52
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              211   5e-52
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              207   7e-51
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     206   3e-50
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  204   1e-49
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        203   2e-49
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...   202   4e-49
gb|AAK29467.1| polyprotein-like [Solanum chilense]                    196   3e-47

>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  236 bits (602), Expect = 2e-59
 Identities = 163/469 (34%), Positives = 236/469 (50%), Gaps = 17/469 (3%)
 Frame = -3

Query: 1358 FDIVKFDGKNNFTNWQTEVKDILISLKQYKALKGKPSTLPEDWTDAEWEEFDLEACSTIR 1179
            +D+   D    F+ WQ +++ +L   +   AL G      +DW++ E ++ D +A S I 
Sbjct: 6    YDLPLLDRDTRFSLWQVKMRAVLAQQELDDALSGFDKRT-QDWSNDE-KKRDRKAMSYIH 63

Query: 1178 LCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHINA 999
            L L+  I+     E +A  LW KL+ + M KDL + + L+QKL+        S+ DH++A
Sbjct: 64   LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSA 123

Query: 998  FTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQAK 819
            F +I   +E + +K DE + A+ILLC LP  Y    D +L  +D  TLK  EV  AL AK
Sbjct: 124  FKEIVADLESMEVKYDEKDLALILLCSLPSSYANFRDTILYSRDTLTLK--EVYDALHAK 181

Query: 818  AIRDVETTS---SSEAQSLFVERGRQ---TXXXXXXXXXXXXXXXXXXXKGEEECHWCHQ 657
                    S   +S+A+ L V   +Q   T                      + C +C +
Sbjct: 182  EKMKKMVPSEGSNSQAEGLVVRGSQQEKNTNNKSRDKSSSSYRGRSKSRGRYKSCKYCKR 241

Query: 656  LGH-----YXXXXXXXXXXXXXXXXXXXXEASVAQVGDEVLEYLLGVDDSEVLTA----- 507
             GH     +                    E   A V DE         D+E+L A     
Sbjct: 242  DGHDISKCWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEK-------SDAELLVAYAGCA 294

Query: 506  ETSEDVMYEWIFDTGASYHMCPARENFSTYREVNGGKVLMGDKGSLKTVGVGSIKFQMFD 327
            +TS+    +WI DT  +YHMCP R+ F+TY  V GG VLMGD    +  G+G+++ +MFD
Sbjct: 295  QTSD----QWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFD 350

Query: 326  SAERTLTEVRHVPGLRKGLISLGVLEAAGYGFSGKDGILTVTWEGRIIMRGE-RYGNLYF 150
               RTL++VRH+P L++ LISL  L+  GY +SG DGIL VT    ++M+   +  NLY 
Sbjct: 351  GCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLYH 410

Query: 149  LRGKPLLGVMQTLVSQVDEKRYLQTQLWHMRLGHMSEKGLTVLSKQGLL 3
            L+G  +LG + T+   +       T LWHMRLGHMSE GL  LSK+GLL
Sbjct: 411  LQGTTILGNVATVSDSLSNSD--ATNLWHMRLGHMSEIGLAELSKRGLL 457


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  234 bits (596), Expect = 1e-58
 Identities = 145/455 (31%), Positives = 234/455 (51%), Gaps = 5/455 (1%)
 Frame = -3

Query: 1352 IVKFDGKNNFTNWQTEVKDILISLKQYKALKGKPSTLPEDWTDAEWEEFDLEACSTIRLC 1173
            I KF G+N+F+ WQ +++ +L     +  L    + +       E    + +A STI LC
Sbjct: 8    IDKFTGRNSFSLWQIKMRALLKQQGFWAPLSKDKNAV----VTPEMAILEEKAHSTIMLC 63

Query: 1172 LTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHINAFT 993
            L  +++   + E +A  LW KL+ +YM K L   L L+Q+L+      G  L +H+    
Sbjct: 64   LADDVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRMAEGTQLREHLEQLN 123

Query: 992  KITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQAKAI 813
             +   + +I +K+++ + A+ILL  LP  +E  + + + GKD  T+  +EV +AL ++ +
Sbjct: 124  TLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGKD--TVSLEEVRSALHSREL 181

Query: 812  RDVETTSSSEAQ--SLFVE--RGRQTXXXXXXXXXXXXXXXXXXXKGEEECHWCHQLGHY 645
            R     +S++ Q   LF    +GR+                      ++ C++C + GH+
Sbjct: 182  RHKANGTSTDIQPSGLFTSSRKGRKNGGKKNKPMSKGAKP-------DDVCNYCKEKGHW 234

Query: 644  XXXXXXXXXXXXXXXXXXXXEASVAQVGDEVLEYLLGVDDSEVLTAETSEDVMYEWIFDT 465
                                 +    V   V E     ++   L A+        W+ D+
Sbjct: 235  KFDCPKKKKQ-----------SEKQSVSAAVAEEDTNSEEDIALVADEHTHHSDVWVLDS 283

Query: 464  GASYHMCPARENFSTYREVNGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTLTEVRHVPG 285
            GASYH+CP RE F+TY +V+GG + M +    K VG GSIK +  D +  TL EVRHVP 
Sbjct: 284  GASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHVPL 343

Query: 284  LRKGLISLGVLEAAGYGFSGKDGILTVTWEG-RIIMRGERYGNLYFLRGKPLLGVMQTLV 108
            + K LISL +L++ G+ +SGKDG+L V W+G  +I++G   G LYFL+G  + G      
Sbjct: 344  MTKNLISLSLLDSKGFSWSGKDGVLRV-WKGSNLILKGVMRGTLYFLQGSTVTGSAHVAS 402

Query: 107  SQVDEKRYLQTQLWHMRLGHMSEKGLTVLSKQGLL 3
            S+  +K    T+LWH+RLGHM E+G+ +LSK+ LL
Sbjct: 403  SEFHQKD--MTKLWHIRLGHMGERGMQILSKEDLL 435


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  226 bits (575), Expect = 3e-56
 Identities = 162/470 (34%), Positives = 232/470 (49%), Gaps = 18/470 (3%)
 Frame = -3

Query: 1358 FDIVKFDGKNNFTNWQTEVKDILISLKQYKALKGKPSTLPEDWTDAEWEEFDLEACSTIR 1179
            +D+   D    F+ WQ +++ +L       AL G      +DW++ E ++ D +A S I 
Sbjct: 41   YDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRT-QDWSNDEKKK-DRKAMSYIH 98

Query: 1178 LCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHINA 999
            L L+  I+     E +A  LW KL+ + M KDL + + L+QKL+        S+ DH++ 
Sbjct: 99   LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLST 158

Query: 998  FTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQAK 819
            F +I   +E I +K DE +  +ILLC LP  Y    D +L   D   LK  EV  AL AK
Sbjct: 159  FKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHDTLILK--EVYDALHAK 216

Query: 818  AIRDVETTS---SSEAQSLFVERGRQ----TXXXXXXXXXXXXXXXXXXXKGEEECHWCH 660
                    S   +S+A+ L V RGRQ    T                      + C +C 
Sbjct: 217  EKMKKMVPSEGSNSQAEGLVV-RGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCK 275

Query: 659  QLGH-----YXXXXXXXXXXXXXXXXXXXXEASVAQVGDEVLEYLLGVDDSEVLTA---- 507
            + GH     +                    E   A V DE         D+E+L A    
Sbjct: 276  RDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEK-------SDTELLVAYAGC 328

Query: 506  -ETSEDVMYEWIFDTGASYHMCPARENFSTYREVNGGKVLMGDKGSLKTVGVGSIKFQMF 330
             +TS+    +WI DT  +YHMCP R+ F+TY  + GG VLMGD    +  G+G+++ +MF
Sbjct: 329  AQTSD----QWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMF 384

Query: 329  DSAERTLTEVRHVPGLRKGLISLGVLEAAGYGFSGKDGILTVTWEGRIIMRGE-RYGNLY 153
            D   RTL++VRH+P L++ LISL  L+  GY +SG DGIL VT    ++M+ + +  NLY
Sbjct: 385  DGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLY 444

Query: 152  FLRGKPLLGVMQTLVSQVDEKRYLQTQLWHMRLGHMSEKGLTVLSKQGLL 3
             LRG  +LG +  +   +       T LWHMRLGHMSE GL  LSK+ LL
Sbjct: 445  HLRGTTILGNVAAVSDSLSNSD--ATNLWHMRLGHMSEIGLAELSKRELL 492


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  226 bits (575), Expect = 3e-56
 Identities = 162/470 (34%), Positives = 232/470 (49%), Gaps = 18/470 (3%)
 Frame = -3

Query: 1358 FDIVKFDGKNNFTNWQTEVKDILISLKQYKALKGKPSTLPEDWTDAEWEEFDLEACSTIR 1179
            +D+   D    F+ WQ +++ +L       AL G      +DW++ E ++ D +A S I 
Sbjct: 41   YDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRT-QDWSNDEKKK-DRKAMSYIH 98

Query: 1178 LCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHINA 999
            L L+  I+     E +A  LW KL+ + M KDL + + L+QKL+        S+ DH++ 
Sbjct: 99   LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLST 158

Query: 998  FTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQAK 819
            F +I   +E I +K DE +  +ILLC LP  Y    D +L   D   LK  EV  AL AK
Sbjct: 159  FKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHDTLILK--EVYDALHAK 216

Query: 818  AIRDVETTS---SSEAQSLFVERGRQ----TXXXXXXXXXXXXXXXXXXXKGEEECHWCH 660
                    S   +S+A+ L V RGRQ    T                      + C +C 
Sbjct: 217  EKMKKMVPSEGSNSQAEGLVV-RGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCK 275

Query: 659  QLGH-----YXXXXXXXXXXXXXXXXXXXXEASVAQVGDEVLEYLLGVDDSEVLTA---- 507
            + GH     +                    E   A V DE         D+E+L A    
Sbjct: 276  RDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEK-------SDTELLVAYAGC 328

Query: 506  -ETSEDVMYEWIFDTGASYHMCPARENFSTYREVNGGKVLMGDKGSLKTVGVGSIKFQMF 330
             +TS+    +WI DT  +YHMCP R+ F+TY  + GG VLMGD    +  G+G+++ +MF
Sbjct: 329  AQTSD----QWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMF 384

Query: 329  DSAERTLTEVRHVPGLRKGLISLGVLEAAGYGFSGKDGILTVTWEGRIIMRGE-RYGNLY 153
            D   RTL++VRH+P L++ LISL  L+  GY +SG DGIL VT    ++M+ + +  NLY
Sbjct: 385  DGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLY 444

Query: 152  FLRGKPLLGVMQTLVSQVDEKRYLQTQLWHMRLGHMSEKGLTVLSKQGLL 3
             LRG  +LG +  +   +       T LWHMRLGHMSE GL  LSK+ LL
Sbjct: 445  HLRGTTILGNVAAVSDSLSNSD--ATNLWHMRLGHMSEIGLAELSKRELL 492


>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
            gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
            Japonica Group]
          Length = 778

 Score =  222 bits (565), Expect = 4e-55
 Identities = 160/460 (34%), Positives = 227/460 (49%), Gaps = 8/460 (1%)
 Frame = -3

Query: 1358 FDIVKFDGKNNFTNWQTEVKDILISLKQYKALKGKPSTLPEDWTDAEWEEFDLEACSTIR 1179
            +D+   D    F+ WQ +++ +L       AL G      +DW+  E ++ D +  S I 
Sbjct: 6    YDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRT-QDWSVDEKKK-DHKVMSYIH 63

Query: 1178 LCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHINA 999
            L L+  I+     E +A  LW KL+ + M KDL + + L+QKL+        S+ DH++A
Sbjct: 64   LHLSNNILQEVLKEETAVGLWLKLKQICMTKDLTSKMHLKQKLFLHKLQDDESVMDHLSA 123

Query: 998  FTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQAK 819
            F +I   +E + +K DE +  +ILLC LP  Y    D +L  +D  TLK  EV  AL AK
Sbjct: 124  FKEIVADLESMEVKHDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLK--EVYDALHAK 181

Query: 818  AIRDVETTS---SSEAQSLFV----ERGRQTXXXXXXXXXXXXXXXXXXXKGEEECHWCH 660
                    S   +S+A+SL V     R  QT                     +EE     
Sbjct: 182  EKMKKMVPSEGSNSQAESLVVGVGNRRRTQTTNQEIKAQVATVGDQSPEAGKKEE----- 236

Query: 659  QLGHYXXXXXXXXXXXXXXXXXXXXEASVAQVGDEVLEYLLGVDDSEVLTAETSEDVMYE 480
                                     E   A V DE  +  L V  + V  A+TS+    +
Sbjct: 237  -------------------------EGKAAVVTDEKSDAELLV--AYVGCAQTSD----Q 265

Query: 479  WIFDTGASYHMCPARENFSTYREVNGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTLTEV 300
            WI DT  +YHMCP R+ F+TY  V GG VLMGD    +  G+G+++ +MFD   RTL++V
Sbjct: 266  WILDTACTYHMCPNRDWFATYETVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDV 325

Query: 299  RHVPGLRKGLISLGVLEAAGYGFSGKDGILTVTWEGRIIMRGE-RYGNLYFLRGKPLLGV 123
            RH+P L++ LIS   L+  GY +SG DGIL VT    ++M+ + +  NLY LRG  +LG 
Sbjct: 326  RHIPNLKRSLISFCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGN 385

Query: 122  MQTLVSQVDEKRYLQTQLWHMRLGHMSEKGLTVLSKQGLL 3
            +  +   +       T LWHMRLGHMSE GL  LSK+GLL
Sbjct: 386  VAAVSDSLSNSD--ATNLWHMRLGHMSEIGLAELSKRGLL 423


>gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 424

 Score =  217 bits (553), Expect = 9e-54
 Identities = 143/420 (34%), Positives = 213/420 (50%), Gaps = 6/420 (1%)
 Frame = -3

Query: 1367 VHGFDIVKFDGKNNFTNWQTEVKDILISLKQYKALKGKPSTLPEDWTDAEWEEFDLEACS 1188
            V  F++VKFDG  NF  WQ  +KD+L      KAL+    T+PE     +WEE   +A +
Sbjct: 6    VSKFEVVKFDGTGNFVLWQMRLKDLLAQQGISKALE---ETMPEKMDAGKWEEMKAQAAA 62

Query: 1187 TIRLCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDH 1008
            TIRL L+  +M+    E ++KE+W KL  +YM K L + L L+Q+LY         L  H
Sbjct: 63   TIRLSLSDSVMYQVMDEKTSKEIWVKLTSLYMSKSLTSKLYLKQQLYGLQMQEESDLRKH 122

Query: 1007 INAFTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTAL 828
            ++ F ++   +  + +KLD+ +KA+ILLC LP  YE  +  L  GKD  T+K  E++++L
Sbjct: 123  VDVFNQLVVDLSKLDVKLDDEDKAIILLCSLPPSYEHVVTILTHGKD--TIK-TEIISSL 179

Query: 827  QAKAIRDV---ETTSSSEAQSLFVERGRQTXXXXXXXXXXXXXXXXXXXKGEEECHWCHQ 657
             A+ +R     E   +S+A+SL V+                             C+ CH+
Sbjct: 180  LARDLRRSKKNEAMEASQAESLLVKAKHDHEAGVSKSKEKGA-----------RCYKCHE 228

Query: 656  LGHYXXXXXXXXXXXXXXXXXXXXEASVAQVGDEVLEYLLGVDDSEVLTAETSEDVMYEW 477
             GH                      AS+A  GD+           E+LT  ++E     W
Sbjct: 229  FGHIRRNCPLLKKRKDGI-------ASLAARGDDS-----DSSSHEILTV-SNEKSGEAW 275

Query: 476  IFDTGASYHMCPARENFSTYREVNGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTLTEVR 297
            + D+ +SYH+   RE FS+Y+  + G V +GD  S + VGVG +KF+M+D  E  L++VR
Sbjct: 276  MLDSASSYHVTSKREWFSSYKSGDFGVVYLGDDTSYRVVGVGDVKFKMYDGNEVLLSDVR 335

Query: 296  HVPGLRKGLISLGVLEAAG--YGFSGKDGILTVTWEGRIIMRGERYGN-LYFLRGKPLLG 126
            HVPGLRK LISLG L   G  Y        + +  +G+ +M GER  + LY L+G  + G
Sbjct: 336  HVPGLRKSLISLGSLHEIGWLYQVDSDRKTMNIMKDGKTVMTGERTSSCLYKLQGSAVAG 395


>gb|ABA98861.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 425

 Score =  217 bits (553), Expect = 9e-54
 Identities = 142/421 (33%), Positives = 211/421 (50%), Gaps = 7/421 (1%)
 Frame = -3

Query: 1367 VHGFDIVKFDGKNNFTNWQTEVKDILISLKQYKALKGKPSTLPEDWTDAEWEEFDLEACS 1188
            V  F++VKFDG  NF  WQ  +KD+L      KAL+    T+PE     +WEE   +A +
Sbjct: 6    VSKFEVVKFDGTGNFILWQMRLKDLLAQQGISKALE---ETMPEKMDAGKWEEMKAQAAA 62

Query: 1187 TIRLCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDH 1008
            TIRL L+  +M+    E + KE+WDKL  +YM K L + L L+Q+LY         L  H
Sbjct: 63   TIRLSLSDSVMYPVMDEKTPKEIWDKLASLYMSKSLTSKLYLKQQLYGLQMQEESDLRKH 122

Query: 1007 INAFTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTAL 828
            ++ F ++   +  + +KLD+ + A+ILLC LP  YE  +  L+ GKD  T+K +E +++L
Sbjct: 123  VDVFNQLVVDLSKLDVKLDDEDMAIILLCSLPPSYEHVVTTLMHGKD--TVKTEEKISSL 180

Query: 827  QAKAIRDV---ETTSSSEAQSLFVERGRQTXXXXXXXXXXXXXXXXXXXKGEEECHWCHQ 657
             A+ +R     E   +S+A+SL V+                             C+ CH+
Sbjct: 181  LARDLRRSNKNEAMEASQAESLLVKAKHDHEAGVSKSKDKGA-----------RCYKCHE 229

Query: 656  LGHYXXXXXXXXXXXXXXXXXXXXEASVAQVGDEVLEYLLGVDDSEVLTAETSEDVMYE- 480
             GH                      AS+A  GD+        D S   T   S +   E 
Sbjct: 230  FGHIRRNCPLLKKRKGGI-------ASLAARGDDS-------DSSSHETLTVSNEKSGEA 275

Query: 479  WIFDTGASYHMCPARENFSTYREVNGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTLTEV 300
            W+ D+ +SYH+   RE FS+Y+  + G V +GD  S + VGVG +KF+M+D  E  L++V
Sbjct: 276  WMLDSASSYHVTSKREWFSSYKSGDFGVVYLGDDTSYRVVGVGDVKFEMYDGNEVLLSDV 335

Query: 299  RHVPGLRKGLISLGVLEAAG--YGFSGKDGILTVTWEGRIIMRGERYGN-LYFLRGKPLL 129
            RH+PGLRK LISLG L      Y        + +  +G+ +M GER  + LY L+G  + 
Sbjct: 336  RHMPGLRKSLISLGSLHETSWLYQVDFDRKTMNIMKDGKTVMTGERTSSCLYKLQGSAVA 395

Query: 128  G 126
            G
Sbjct: 396  G 396


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  217 bits (553), Expect = 9e-54
 Identities = 154/468 (32%), Positives = 230/468 (49%), Gaps = 16/468 (3%)
 Frame = -3

Query: 1358 FDIVKFDGKNNFTNWQTEVKDILISLKQYKALKGKPSTLPEDWTDAEWEEFDLEACSTIR 1179
            +D+        F+ WQ +++ +L       AL G       DW++ E ++ D +A S I 
Sbjct: 213  YDLPLLYRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRT-HDWSNDE-KKRDRKAMSYIH 270

Query: 1178 LCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHINA 999
            L L+  I+     E  A  LW KL+ + M KDL + + L+Q L+        S+ DH++A
Sbjct: 271  LHLSNNILQEVLKEEIAAGLWLKLEQICMTKDLTSKMHLKQTLFLHKLQDDGSVMDHLSA 330

Query: 998  FTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLK--YDEVVTALQ 825
            F +I   +E + +K DE +  +ILLC LP  Y    D +L  +D  TLK  YD +    +
Sbjct: 331  FKEIIADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHVKEK 390

Query: 824  AKAIRDVETTSSSEAQSLFV---ERGRQTXXXXXXXXXXXXXXXXXXXKGEEECHWCHQL 654
             K +   E  S+S+A+ L V   ++ + T                      + C +C + 
Sbjct: 391  MKKMVPSEG-SNSQAEGLIVWGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRD 449

Query: 653  GH-----YXXXXXXXXXXXXXXXXXXXXEASVAQVGDEVLEYLLGVDDSEVLTA-----E 504
            GH     +                    E   A V DE         D+E+L A     +
Sbjct: 450  GHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEK-------SDAELLVAYAGCAQ 502

Query: 503  TSEDVMYEWIFDTGASYHMCPARENFSTYREVNGGKVLMGDKGSLKTVGVGSIKFQMFDS 324
            TS+    +WI +T   YHMCP R+ F+TY  V  G VLMGD    +  G+G+++ +MFD 
Sbjct: 503  TSD----QWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDG 558

Query: 323  AERTLTEVRHVPGLRKGLISLGVLEAAGYGFSGKDGILTVTWEGRIIMRGE-RYGNLYFL 147
              RTL++VRH+P L++ LISL  L+  GY +SG DGIL VT    ++M+ + +  NLY L
Sbjct: 559  CIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHL 618

Query: 146  RGKPLLGVMQTLVSQVDEKRYLQTQLWHMRLGHMSEKGLTVLSKQGLL 3
            RG  +LG +  +   +       T LWHMRLGHM+E GL  LSK+GLL
Sbjct: 619  RGTTILGNVAAVSDSLSNSD--ATNLWHMRLGHMTEIGLAELSKRGLL 664


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
            gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
            Japonica Group]
          Length = 1601

 Score =  217 bits (553), Expect = 9e-54
 Identities = 154/468 (32%), Positives = 230/468 (49%), Gaps = 16/468 (3%)
 Frame = -3

Query: 1358 FDIVKFDGKNNFTNWQTEVKDILISLKQYKALKGKPSTLPEDWTDAEWEEFDLEACSTIR 1179
            +D+        F+ WQ +++ +L       AL G       DW++ E ++ D +A S I 
Sbjct: 6    YDLPLLYRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRT-HDWSNDE-KKRDRKAMSYIH 63

Query: 1178 LCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHINA 999
            L L+  I+     E  A  LW KL+ + M KDL + + L+Q L+        S+ DH++A
Sbjct: 64   LHLSNNILQEVLKEEIAAGLWLKLEQICMTKDLTSKMHLKQTLFLHKLQDDGSVMDHLSA 123

Query: 998  FTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLK--YDEVVTALQ 825
            F +I   +E + +K DE +  +ILLC LP  Y    D +L  +D  TLK  YD +    +
Sbjct: 124  FKEIIADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHVKEK 183

Query: 824  AKAIRDVETTSSSEAQSLFV---ERGRQTXXXXXXXXXXXXXXXXXXXKGEEECHWCHQL 654
             K +   E  S+S+A+ L V   ++ + T                      + C +C + 
Sbjct: 184  MKKMVPSEG-SNSQAEGLIVWGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRD 242

Query: 653  GH-----YXXXXXXXXXXXXXXXXXXXXEASVAQVGDEVLEYLLGVDDSEVLTA-----E 504
            GH     +                    E   A V DE         D+E+L A     +
Sbjct: 243  GHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEK-------SDAELLVAYAGCAQ 295

Query: 503  TSEDVMYEWIFDTGASYHMCPARENFSTYREVNGGKVLMGDKGSLKTVGVGSIKFQMFDS 324
            TS+    +WI +T   YHMCP R+ F+TY  V  G VLMGD    +  G+G+++ +MFD 
Sbjct: 296  TSD----QWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDG 351

Query: 323  AERTLTEVRHVPGLRKGLISLGVLEAAGYGFSGKDGILTVTWEGRIIMRGE-RYGNLYFL 147
              RTL++VRH+P L++ LISL  L+  GY +SG DGIL VT    ++M+ + +  NLY L
Sbjct: 352  CIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHL 411

Query: 146  RGKPLLGVMQTLVSQVDEKRYLQTQLWHMRLGHMSEKGLTVLSKQGLL 3
            RG  +LG +  +   +       T LWHMRLGHM+E GL  LSK+GLL
Sbjct: 412  RGTTILGNVAAVSDSLSNSD--ATNLWHMRLGHMTEIGLAELSKRGLL 457


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  216 bits (549), Expect = 3e-53
 Identities = 155/469 (33%), Positives = 225/469 (47%), Gaps = 17/469 (3%)
 Frame = -3

Query: 1358 FDIVKFDGKNNFTNWQTEVKDILISLKQYKALKGKPSTLPEDWTDAEWEEFDLEACSTIR 1179
            +D+   D    F+ WQ +++ +L       A  G      +DW++ E ++ D +A S I 
Sbjct: 6    YDLPLLDRDTRFSLWQVKMRAVLAQQDLDDAFSGFDKRT-QDWSNDE-KKMDRKAMSYIH 63

Query: 1178 LCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHINA 999
            L L+  I+     E +A  LW KL+ + M KDL                   S+ DH++ 
Sbjct: 64   LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTND---------------GSVMDHLSV 108

Query: 998  FTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQAK 819
            F +I   +E + +K DE +  +ILLC LP  Y    D +L  +D  TLK  EV  AL AK
Sbjct: 109  FKEIVADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLK--EVYDALHAK 166

Query: 818  AIRDVETTS---SSEAQSLFVERGRQ---TXXXXXXXXXXXXXXXXXXXKGEEECHWCHQ 657
                    S   +S+A+ L V+  +Q   T                      + C +C +
Sbjct: 167  EKMKKMVPSEGSNSQAEGLVVQGSQQEKNTNNKSRDKSSSSYRGRSKSRGRYKSCKYCKR 226

Query: 656  LGH-----YXXXXXXXXXXXXXXXXXXXXEASVAQVGDEVLEYLLGVDDSEVLTA----- 507
             GH     +                    E   A V DE         D+E+L A     
Sbjct: 227  DGHDISKCWKLQDKDKRTGKYIPKGKKEDEGKAAVVTDEK-------SDAELLVAYAGCA 279

Query: 506  ETSEDVMYEWIFDTGASYHMCPARENFSTYREVNGGKVLMGDKGSLKTVGVGSIKFQMFD 327
            +TS+    +WI DT  +YHMCP R+ F+TY  V GG VLMGD    +  G+G+++ +MFD
Sbjct: 280  QTSD----QWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFD 335

Query: 326  SAERTLTEVRHVPGLRKGLISLGVLEAAGYGFSGKDGILTVTWEGRIIMRGE-RYGNLYF 150
               RTL++VRH+P L++ LISL  L+  GY +SG DGIL VT    ++M+ + +  NLY 
Sbjct: 336  GCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLYH 395

Query: 149  LRGKPLLGVMQTLVSQVDEKRYLQTQLWHMRLGHMSEKGLTVLSKQGLL 3
            L+G  +LG + T+   +       T LWHMRLGHMSE GL  LS +GLL
Sbjct: 396  LQGTTILGNVATVSDSLSNSD--ATNLWHMRLGHMSEIGLAELSMRGLL 442


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  215 bits (548), Expect = 4e-53
 Identities = 144/406 (35%), Positives = 202/406 (49%), Gaps = 12/406 (2%)
 Frame = -3

Query: 1184 IRLCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHI 1005
            I L L+  I+     E +A  LW KL+ + M KDL + + L+QKL+        S+ DH+
Sbjct: 4    IHLHLSNNILQEVLKEKTATALWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDESVMDHL 63

Query: 1004 NAFTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQ 825
            + F +I   +E + IK DE +  +ILLC LP  Y    D +L  +D  TL+  EV  AL 
Sbjct: 64   STFKEIVADLESMEIKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLQ--EVYDALH 121

Query: 824  AKAI--RDVETTSSSEAQSLFVERGRQ----TXXXXXXXXXXXXXXXXXXXKGEEECHWC 663
            AK    + V +  S+      V RGRQ    T                      + C +C
Sbjct: 122  AKEKMKKMVPSEGSNSQPESLVVRGRQQEKNTDNKSRDKSSSGYRGRSKSRGRYKSCKYC 181

Query: 662  HQLGHYXXXXXXXXXXXXXXXXXXXXEASVAQVGDEVLEYLLGVDDSEVLTA-----ETS 498
             + GH                          Q    V        D+E+L A     +TS
Sbjct: 182  KRGGHDISDCWKLQNKEKHKGNYKPKGKQEEQGKAAVATD--NKPDAELLVAYAGCVQTS 239

Query: 497  EDVMYEWIFDTGASYHMCPARENFSTYREVNGGKVLMGDKGSLKTVGVGSIKFQMFDSAE 318
            +    EW+ DTG +YHMCP R+ F+TY  V GG VLMGD    K  GVG+I+ +MFD   
Sbjct: 240  D----EWLLDTGCTYHMCPNRDWFTTYEPVQGGNVLMGDNTPCKVAGVGTIQIKMFDGCI 295

Query: 317  RTLTEVRHVPGLRKGLISLGVLEAAGYGFSGKDGILTVTWEGRIIMRGE-RYGNLYFLRG 141
            RTL++VRH+P L++ LISL  L+  GY +SG DGIL VT    ++M+ + +  +LY L+G
Sbjct: 296  RTLSDVRHIPSLKRNLISLSTLDRKGYRYSGGDGILKVTKGSLVVMKADIKNADLYHLQG 355

Query: 140  KPLLGVMQTLVSQVDEKRYLQTQLWHMRLGHMSEKGLTVLSKQGLL 3
              ++G +  +   +       + LWHMRLGHMSE GL  LSK+GLL
Sbjct: 356  TTIVGNVAAVTDSLS-----NSDLWHMRLGHMSEIGLAELSKRGLL 396


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  214 bits (545), Expect = 8e-53
 Identities = 141/463 (30%), Positives = 225/463 (48%), Gaps = 11/463 (2%)
 Frame = -3

Query: 1358 FDIVKFDGKNNFTNWQTEVKDILISLKQYKALKGKPSTLPEDWTDAEWEEFDLEACSTIR 1179
            F+I KF+G+N F+ W+ +++ IL       A+ G+P+    D TD +W+E D  A + + 
Sbjct: 5    FEIEKFNGRN-FSLWKLKIRAILRKDNCLDAIDGRPA----DITDEKWKEMDDNAVANLH 59

Query: 1178 LCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHINA 999
            L +   ++ + A + +AKE+WD L  +Y  K L   + L+++LYT       S++DHIN 
Sbjct: 60   LAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINT 119

Query: 998  FTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQAK 819
               +   +     K+ E E+A +LL  LP  Y+  I N+       TL +D+V  A+  +
Sbjct: 120  LNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNITDTLHFDDVAGAILEE 179

Query: 818  AIR----DVETTSSSEAQSLFVERGRQTXXXXXXXXXXXXXXXXXXXKGEEECHWCHQLG 651
              R    +  + SS +A++L + RGR T                       +C+ C   G
Sbjct: 180  ESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKK--NIKCYGCGMKG 237

Query: 650  HYXXXXXXXXXXXXXXXXXXXXEASVAQVGDEVLEYLLGVDDSEVLTAETSEDVMYE--- 480
            H                     +  VA             DD E+L +E +     E   
Sbjct: 238  HVKKECWNIKKNGEKNSEASTSQGCVASTS----------DDGEILYSEAATSSKGERRL 287

Query: 479  ---WIFDTGASYHMCPARENFSTYREVNGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTL 309
               WI D+GA++HM P R+ F +Y  ++ G V MG+  +L+  GVG+I+ +M D   R +
Sbjct: 288  NDVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKI 347

Query: 308  TEVRHVPGLRKGLISLGVLEAAGYGFSGKDGILTVTWEGRIIMRGERY-GNLYFLRGKPL 132
              VRHV GL+K L+S+G L+  G     + GIL V     ++M+ E+   NLY L G  L
Sbjct: 348  QGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTL 407

Query: 131  LGVMQTLVSQVDEKRYLQTQLWHMRLGHMSEKGLTVLSKQGLL 3
                 ++ +   E+    T +WH RLGHMSE+GL VL+++ LL
Sbjct: 408  QEADASVAASSQEE---TTMMWHQRLGHMSERGLKVLAERNLL 447


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  213 bits (541), Expect = 2e-52
 Identities = 141/463 (30%), Positives = 224/463 (48%), Gaps = 11/463 (2%)
 Frame = -3

Query: 1358 FDIVKFDGKNNFTNWQTEVKDILISLKQYKALKGKPSTLPEDWTDAEWEEFDLEACSTIR 1179
            F+I KF+G+N F+ W+ +++ IL       A+ G+P+    D TD +W+E D  A + + 
Sbjct: 5    FEIEKFNGRN-FSLWKLKIRAILRKDNCLDAIDGRPA----DITDEKWKEMDDNAVANLH 59

Query: 1178 LCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHINA 999
            L +   ++ + A + +AKE+WD L  +Y  K L   + L+++LYT       S++DHIN 
Sbjct: 60   LAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINT 119

Query: 998  FTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQAK 819
               +   +     K+ E E+A +LL  LP  Y+  I N+       TL +D+V  A+  +
Sbjct: 120  LNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILEE 179

Query: 818  AIR----DVETTSSSEAQSLFVERGRQTXXXXXXXXXXXXXXXXXXXKGEEECHWCHQLG 651
              R    +  + SS +A++L + RGR T                       +C+ C   G
Sbjct: 180  ESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKK--NIKCYGCGMKG 237

Query: 650  HYXXXXXXXXXXXXXXXXXXXXEASVAQVGDEVLEYLLGVDDSEVLTAETSEDVMYE--- 480
            H                     +  VA             DD E+L +E +     E   
Sbjct: 238  HVKKECWNIKKNGEKNSEASTSQGCVASTS----------DDGEILYSEAATSSKGERRL 287

Query: 479  ---WIFDTGASYHMCPARENFSTYREVNGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTL 309
               WI D+GA++HM P R+ F +Y  ++ G V MG+  +L+  GVG+I+ +M D   R +
Sbjct: 288  NDVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKI 347

Query: 308  TEVRHVPGLRKGLISLGVLEAAGYGFSGKDGILTVTWEGRIIMRGERY-GNLYFLRGKPL 132
              VRHV GL+K L+S+G L+  G     + GIL V     ++M+ E+   NLY L G  L
Sbjct: 348  QGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTL 407

Query: 131  LGVMQTLVSQVDEKRYLQTQLWHMRLGHMSEKGLTVLSKQGLL 3
                 ++ +   E+    T +WH RLGHMSE+GL VL ++ LL
Sbjct: 408  QEADASVAAASQEE---TTMMWHQRLGHMSERGLKVLVERNLL 447


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  211 bits (538), Expect = 5e-52
 Identities = 142/460 (30%), Positives = 226/460 (49%), Gaps = 8/460 (1%)
 Frame = -3

Query: 1358 FDIVKFDGKNNFTNWQTEVKDILISLKQYKALKGKPSTLPEDWTDAEWEEFDLEACSTIR 1179
            F+I KF+G+  F+ W+ +++ IL       A+ G+P+    D TD +W+E D  A + + 
Sbjct: 5    FEIEKFNGRK-FSLWKLKIRAILRKDNCLDAIDGRPA----DITDEKWKEMDDNAVANLH 59

Query: 1178 LCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHINA 999
            L +   ++ + A + +AKE+WD L  +Y  K L   + L+++LYT       S++DHIN 
Sbjct: 60   LAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINT 119

Query: 998  FTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQAK 819
               +   +     K+ E E+A +LL  LP  Y+  I N+       TL +D+V  A+  +
Sbjct: 120  LNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILEE 179

Query: 818  AIR----DVETTSSSEAQSLFVERGRQTXXXXXXXXXXXXXXXXXXXKGEEECHWCHQLG 651
              R    +  + SS +A++L + RGR T                   K   +C+ C   G
Sbjct: 180  ESRRKNKEERSESSKQAEALTMTRGRST--ERGPSGSQNHGRSKSRRKNNIKCYGCGMKG 237

Query: 650  HYXXXXXXXXXXXXXXXXXXXXEASVAQVGD--EVLEYLLGVDDSEVLTAETSEDVMYE- 480
            H                     +  VA   D  E+L        SE  T+   E  + + 
Sbjct: 238  HVKKECWNNKKNGEKNSEATTSQGCVASTSDDGEILY-------SEAATSSEGERQLNDV 290

Query: 479  WIFDTGASYHMCPARENFSTYREVNGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTLTEV 300
            WI D+GA++HM P R+ F +Y  ++ G V MG+  +L+  GVG+I+ +M D   R +  V
Sbjct: 291  WIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGV 350

Query: 299  RHVPGLRKGLISLGVLEAAGYGFSGKDGILTVTWEGRIIMRGERY-GNLYFLRGKPLLGV 123
            RHV GL+K L+S+G L+  G     + GIL V     ++M+ E+   NLY L G  L   
Sbjct: 351  RHVKGLKKNLLSVGQLDDLGCKIHSESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEA 410

Query: 122  MQTLVSQVDEKRYLQTQLWHMRLGHMSEKGLTVLSKQGLL 3
              ++ +   E+    T +WH RLGHMSE+GL VL ++ LL
Sbjct: 411  DASVAAASQEE---TTMMWHQRLGHMSERGLKVLVERNLL 447


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  207 bits (528), Expect = 7e-51
 Identities = 139/463 (30%), Positives = 223/463 (48%), Gaps = 11/463 (2%)
 Frame = -3

Query: 1358 FDIVKFDGKNNFTNWQTEVKDILISLKQYKALKGKPSTLPEDWTDAEWEEFDLEACSTIR 1179
            F+I KF+G+N F+ W+ +++ IL       A+ G+ +    D TD +W+E D  A + + 
Sbjct: 5    FEIEKFNGRN-FSLWKLKIRAILRKDNCLDAIDGRLA----DITDEKWKEMDDNAVANLH 59

Query: 1178 LCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHINA 999
            L +   ++ + A + +AKE+WD L  +Y  K L   + L+++LYT       S++DHIN 
Sbjct: 60   LAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLQMGESTSVTDHINT 119

Query: 998  FTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQAK 819
               +   +     K+ + E+A +LL  LP  Y+  I N+       TL +D+V  A+  +
Sbjct: 120  LNTLFSQLTASDFKIAKNERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILEE 179

Query: 818  AIR----DVETTSSSEAQSLFVERGRQTXXXXXXXXXXXXXXXXXXXKGEEECHWCHQLG 651
              R    +  + SS +A++L + RGR T                       +C+ C   G
Sbjct: 180  ESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKK--NIKCYGCGMKG 237

Query: 650  HYXXXXXXXXXXXXXXXXXXXXEASVAQVGDEVLEYLLGVDDSEVLTAETSEDVMYE--- 480
            H                     +  VA   D          D E+L +E +     E   
Sbjct: 238  HVKKECWNIKKNGEKNSEASTSQGCVASTSD----------DGEILYSEAATSSKGERRL 287

Query: 479  ---WIFDTGASYHMCPARENFSTYREVNGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTL 309
               WI D+GA++HM P R+ F +Y  ++ G V MG+  +L+  GVG+I+ +M D   R +
Sbjct: 288  NDVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKI 347

Query: 308  TEVRHVPGLRKGLISLGVLEAAGYGFSGKDGILTVTWEGRIIMRGERY-GNLYFLRGKPL 132
              VRHV GL+K L+S+G L+  G     + GIL V     ++M+ E+   NLY L G  L
Sbjct: 348  QGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTL 407

Query: 131  LGVMQTLVSQVDEKRYLQTQLWHMRLGHMSEKGLTVLSKQGLL 3
                 ++ +   E+    T +WH RLGHMSE+GL VL ++ LL
Sbjct: 408  QEADASVAAASQEE---TTMMWHQRLGHMSERGLKVLVERNLL 447


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  206 bits (523), Expect = 3e-50
 Identities = 141/382 (36%), Positives = 193/382 (50%), Gaps = 18/382 (4%)
 Frame = -3

Query: 1094 MKKDLCTHLALRQKLYTFSWVVGRSLSDHINAFTKITCAMEDIGIKLDECEKAMILLCRL 915
            M KDL + + L+QKL+        S+ DH++AF +I   +E + +K DE +  +ILLC L
Sbjct: 1    MTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSAFKEIVADLESMEVKYDEEDLGLILLCSL 60

Query: 914  PQQYEATIDNLLTGKDEKTLKYDEVVTALQAKAIRDVETTS---SSEAQSLFVERGRQ-- 750
            P  Y    D +L  +D  TLK  EV  AL AK        S   +S+A+ L V RGRQ  
Sbjct: 61   PSSYANFRDTILYSRDTLTLK--EVYDALHAKEKMKKMVPSEGSNSQAEGLVV-RGRQQE 117

Query: 749  --TXXXXXXXXXXXXXXXXXXXKGEEECHWCHQLGH-----YXXXXXXXXXXXXXXXXXX 591
              T                      + C +C + GH     +                  
Sbjct: 118  KNTNNKSRDKSSSIYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTRKYIPKGKK 177

Query: 590  XXEASVAQVGDEVLEYLLGVDDSEVLTA-----ETSEDVMYEWIFDTGASYHMCPARENF 426
              E   A V DE         D+E+L A     +TS+    +WI DT  +YHMCP R+ F
Sbjct: 178  EEEGKAAVVTDEK-------SDAELLVAYAGCAQTSD----QWILDTACTYHMCPNRDWF 226

Query: 425  STYREVNGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTLTEVRHVPGLRKGLISLGVLEA 246
            +TY  V GG VLMGD    +  G+G+++ +MFD   RTL +VRH+P L++ LISL  L+ 
Sbjct: 227  ATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDR 286

Query: 245  AGYGFSGKDGILTVTWEGRIIMRGE-RYGNLYFLRGKPLLGVMQTLVSQVDEKRYLQTQL 69
             GY +SG DGIL VT    ++M+ + +Y NLY LRG  +LG +  +   +       T L
Sbjct: 287  KGYKYSGGDGILKVTKGSLVVMKADIKYANLYHLRGTTILGNVAAVSDSLSNSD--ATNL 344

Query: 68   WHMRLGHMSEKGLTVLSKQGLL 3
            WHMRLGHMSE GL  LSK+GLL
Sbjct: 345  WHMRLGHMSEIGLAELSKRGLL 366


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  204 bits (518), Expect = 1e-49
 Identities = 140/464 (30%), Positives = 223/464 (48%), Gaps = 12/464 (2%)
 Frame = -3

Query: 1358 FDIVKFDGKNNFTNWQTEVKDILISLKQYKALKGKPSTLPEDWTDAEWEEFDLEACSTIR 1179
            F+I KF+G +NF+ W+ ++K IL       A+ G+P+    D TD + +E D  A + + 
Sbjct: 5    FEIPKFNG-SNFSLWKLKIKAILRKDNCLPAIDGRPA----DITDDKRKEMDDNAVANLH 59

Query: 1178 LCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHINA 999
            L +   ++ + A + +AK++WD L  +Y  K L   + L+++LYTF      S+ DHIN 
Sbjct: 60   LAVADSVLSSIAEKKTAKKIWDTLIQLYEVKSLHNRIFLKRRLYTFRMSESTSMPDHINN 119

Query: 998  FTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQAK 819
               +   +      + E E+A +LL  LP  Y+  + N+        L +++V  A+  +
Sbjct: 120  LNTMFAQLSASDFTIGENERAEVLLQSLPDSYDQLVINITNNNIVDRLSFNDVAGAILEE 179

Query: 818  AIR----DVETTSSSEAQSLFVERGRQTXXXXXXXXXXXXXXXXXXXKGEEECHWCHQLG 651
              R    +    SS + ++L V RGR T                       +C+ C + G
Sbjct: 180  ESRRKNKEDRQDSSKQMEALTVTRGRSTERGPSGSQNHGRSTSRRKT--NLKCYNCGKRG 237

Query: 650  HYXXXXXXXXXXXXXXXXXXXXEASVAQVGDEVLEYLLGVDDSEVLTAETSEDVMYE--- 480
            H                     +  VA             DD EVL +E +     +   
Sbjct: 238  HLKKDCWSNKKSGEKSSEASTSQGCVASTS----------DDGEVLYSEAAVSTKGKNRL 287

Query: 479  ---WIFDTGASYHMCPARENFSTYREVNGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTL 309
               WI D+GA++HM P R+ F TY  V+ G V MG+  +L+ VG+G++K +M+D   RTL
Sbjct: 288  TDVWIVDSGATWHMTPRRDWFCTYEPVSEGNVFMGNDHALEIVGIGTVKIKMYDGTIRTL 347

Query: 308  TEVRHVPGLRKGLISLGVLEAAGYGFSGKDGILTVTWEGRIIMRGERY-GNLYFLRGKP- 135
             EVRHV  L K L+S+G L+  GY +  + GIL V     ++M+ ++   NLY L G   
Sbjct: 348  QEVRHVKELAKNLLSVGQLDDLGYKYDIQGGILKVVKGSLVVMKAKKVAANLYMLLGDTW 407

Query: 134  LLGVMQTLVSQVDEKRYLQTQLWHMRLGHMSEKGLTVLSKQGLL 3
             +      V   +E     T +WH RLGHMSE+GL VL+++ L+
Sbjct: 408  QMADASVAVGSQEE----TTMMWHRRLGHMSERGLKVLAERNLI 447


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  203 bits (516), Expect = 2e-49
 Identities = 148/464 (31%), Positives = 231/464 (49%), Gaps = 13/464 (2%)
 Frame = -3

Query: 1355 DIVKFDGKNNFTNWQTEVKDILISLKQYKALKGKPSTLPEDWTDAEW--------EEFDL 1200
            +I KF    +F+ W+ ++K +L+        +G  S L E+  +A           +   
Sbjct: 7    EIEKFTIGGDFSLWKLKMKALLVH-------QGLESALDEEDLEASTGSGIDDKRRQIQN 59

Query: 1199 EACSTIRLCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRS 1020
             A ST+ L L   I+   + E +A  +W+K++ + MKK L   L L+++LYTFS   G +
Sbjct: 60   RAHSTLILSLGDSILREISEEKTALGIWNKVETLCMKKSLAHRLFLKKRLYTFSMREGVT 119

Query: 1019 LSDHINAFTKITCAMEDI-GIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDE 843
            + DHI+ F KI   +E +  +K+ + +KA  LL  LP+ YE  +D +L G+   TL  ++
Sbjct: 120  IQDHIDTFNKIILDLEGVENVKICDEDKAFFLLSSLPKSYEGFVDTMLYGR--TTLTLED 177

Query: 842  VVTALQAKAIR---DVETTSSSEAQSLFVERGRQTXXXXXXXXXXXXXXXXXXXKGEEEC 672
            V  +L +K I+   ++E TS+ E      E+ +                     K + +C
Sbjct: 178  VKASLSSKEIQKNCELE-TSNGEGLMARTEKKKDQKNKNQGKGHGKNQETADKKKKKRKC 236

Query: 671  HWCHQLGHYXXXXXXXXXXXXXXXXXXXXEASVAQVGDEVLEYLLGVDDSEVLTAETSED 492
             +C + GHY                     AS    G +      G   +++L A  S +
Sbjct: 237  FYCRKEGHYIRDCFEKKKKESQEKSGDAAVAS--DDGSD------GYQSADLLVASNS-N 287

Query: 491  VMYEWIFDTGASYHMCPARENFSTYREVNGGKVLMGDKGSLKTVGVGSIK-FQMFDSAER 315
               +W+ D+G S+H+CP +  F  Y  V+GG+VLMG+      VG+   K  +      R
Sbjct: 288  TKGQWVIDSGCSFHLCPEKTLFYKYEAVDGGRVLMGNNNVCNIVGIWFCKRSRCLMELLR 347

Query: 314  TLTEVRHVPGLRKGLISLGVLEAAGYGFSGKDGILTVTWEGRIIMRGERYGNLYFLRGKP 135
            +L EVRH P L++ LISLG+L++ GY F  + G L V     I+M+G     LY L+G  
Sbjct: 348  SLHEVRHAPRLKRNLISLGMLDSLGYFFKSRIGGLEVRKGTEIVMKGVNENGLYVLQGSS 407

Query: 134  LLGVMQTLVSQVDEKRYLQTQLWHMRLGHMSEKGLTVLSKQGLL 3
            +   +Q  VS V E+   +T+LWH+RLGHMS KGL  LSKQGLL
Sbjct: 408  V--PVQEGVSAVSEED--RTKLWHLRLGHMSIKGLQELSKQGLL 447


>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score =  202 bits (513), Expect = 4e-49
 Identities = 137/440 (31%), Positives = 212/440 (48%), Gaps = 2/440 (0%)
 Frame = -3

Query: 1316 WQTEVKDILISLKQYKALKGKPSTLPEDWTDAEWEEFDLEACSTIRLCLTREIMHNFASE 1137
            WQ EV D L       A++G+    P++  + +W   +  AC TIR CL+RE  +   +E
Sbjct: 2    WQGEVLDSLFQQGLDIAIEGEK---PKEVEEKDWSIINRLACGTIRSCLSREQKYAVKNE 58

Query: 1136 TSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHINAFTKITCAMEDIGIK 957
            TSA +LW  L+  ++KK                                         +K
Sbjct: 59   TSAHKLWKALEDKFLKKS---------------------------------------DVK 79

Query: 956  LDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQAKAIR--DVETTSSSE 783
             ++ + A++LL  LP ++E     LL GK+  +L  D V +AL +  +R  D   T S+ 
Sbjct: 80   FEDEDLALMLLSSLPDEFEHLETTLLHGKENVSL--DVVCSALYSHELRKQDKMKTKSTT 137

Query: 782  AQSLFVERGRQTXXXXXXXXXXXXXXXXXXXKGEEECHWCHQLGHYXXXXXXXXXXXXXX 603
            ++   V RGRQ                      ++EC +CH+ GH+              
Sbjct: 138  SEEALVARGRQQSQTKERRGMSKSKGRAV---AKDECAFCHEKGHWKKDCPKLQKKEKVL 194

Query: 602  XXXXXXEASVAQVGDEVLEYLLGVDDSEVLTAETSEDVMYEWIFDTGASYHMCPARENFS 423
                   A+VA+   +V        D  ++ + ++   + EWI D+G +YHMCP R+ F 
Sbjct: 195  QD-----ANVAECKSDV------ESDISLIVSLSASLYLDEWILDSGCTYHMCPIRDWFF 243

Query: 422  TYREVNGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTLTEVRHVPGLRKGLISLGVLEAA 243
             ++E++GG V MG+    KTVG+GSIK +  D + R L +VR+VP L+K LISLG LE+ 
Sbjct: 244  EFQELDGGVVYMGNDNPCKTVGIGSIKLRNHDGSTRILRDVRYVPKLKKNLISLGALESK 303

Query: 242  GYGFSGKDGILTVTWEGRIIMRGERYGNLYFLRGKPLLGVMQTLVSQVDEKRYLQTQLWH 63
            G   + +DGIL  T    ++++G    NLY+ +G  ++G +    S   +K    T+LWH
Sbjct: 304  GLVVTMRDGILKATSGALVMLKGVMKNNLYYYQGSTVVGTVAAATSS-SKKDAEATKLWH 362

Query: 62   MRLGHMSEKGLTVLSKQGLL 3
            MRLGH  EK L + +KQGLL
Sbjct: 363  MRLGHAGEKSLQIFTKQGLL 382


>gb|AAK29467.1| polyprotein-like [Solanum chilense]
          Length = 1328

 Score =  196 bits (497), Expect = 3e-47
 Identities = 144/462 (31%), Positives = 211/462 (45%), Gaps = 10/462 (2%)
 Frame = -3

Query: 1358 FDIVKFDG-KNNFTNWQTEVKDILISLKQYKALKGKPSTLPEDWTDAEWEEFDLEACSTI 1182
            +++ KF+G K  F+ WQ  +KD+LI    +KAL GK S  PE     +WEE D +A S I
Sbjct: 6    YEVAKFNGDKPVFSMWQRRMKDLLIQQGLHKALGGK-SKKPESMKLEDWEELDEKAASAI 64

Query: 1181 RLCLTREIMHNFASETSAKELWDKLQLMYMKKDLCTHLALRQKLYTFSWVVGRSLSDHIN 1002
            RL LT ++++N   E SA  +W KL+ +YM K L   L L+++LYT     G +   H+N
Sbjct: 65   RLHLTDDVVNNIVDEESACGIWTKLENLYMSKTLTNKLYLKKQLYTLHMDEGTNFLSHLN 124

Query: 1001 AFTKITCAMEDIGIKLDECEKAMILLCRLPQQYEATIDNLLTGKDEKTLKYDEVVTALQA 822
                +   + ++G+K++E +K ++LL  LP  Y+     +L GKD   LK  +V +AL  
Sbjct: 125  VLNGLITQLANLGVKIEEEDKRIVLLNSLPSSYDTLSTTILHGKDSIQLK--DVTSALLL 182

Query: 821  KAIRDVETTSSSEAQSLFVE-RGR--QTXXXXXXXXXXXXXXXXXXXKGEEECHWCHQLG 651
                 +     +  Q    E RGR  Q                         C+ C Q G
Sbjct: 183  N--EKMRKKPENHGQVFITESRGRSYQRSSSNYGRSGARGKSKVRSKSKARNCYNCDQPG 240

Query: 650  HYXXXXXXXXXXXXXXXXXXXXEASVAQVGDEVLEYLLGVDDSEVLTAETSEDVMY---- 483
            H+                      S  Q  D+    ++  +D  VL     E+ M+    
Sbjct: 241  HF---------KRDCPNPKRGKGESSGQKNDDNTAAMVQNNDDVVLLINEEEECMHLAGT 291

Query: 482  --EWIFDTGASYHMCPARENFSTYREVNGGKVLMGDKGSLKTVGVGSIKFQMFDSAERTL 309
              EW+ DT ASYH  P R+ F  Y   + G V MG+    K  G+G I F+        L
Sbjct: 292  ESEWVVDTAASYHATPVRDLFCRYVAGDYGNVKMGNTSYSKIAGIGDICFKTNVGCTLVL 351

Query: 308  TEVRHVPGLRKGLISLGVLEAAGYGFSGKDGILTVTWEGRIIMRGERYGNLYFLRGKPLL 129
             +VRHVP LR  LIS   L+  GY     +    +T    +I +G   G LY    +   
Sbjct: 352  KDVRHVPDLRMNLISGIALDQDGYENYFANQKWRLTKGALVIAKGVARGTLYRTNAE--- 408

Query: 128  GVMQTLVSQVDEKRYLQTQLWHMRLGHMSEKGLTVLSKQGLL 3
             + Q  ++   E+      LWH R+GH SEKGL +LSK+ L+
Sbjct: 409  -ICQGELNAAHEEN--SADLWHKRMGHTSEKGLQILSKKSLI 447