BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia22_contig00008516
         (1431 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub...   128   7e-27
ref|XP_004148188.1| PREDICTED: uncharacterized protein LOC101204...   124   1e-25
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   124   1e-25
gb|AAD12028.1| putative non-LTR retroelement reverse transcripta...   124   1e-25
ref|XP_004173856.1| PREDICTED: putative ribonuclease H protein A...   119   3e-24
ref|XP_004163799.1| PREDICTED: putative ribonuclease H protein A...   117   1e-23
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       116   2e-23
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           115   6e-23
gb|AAD26953.1| putative non-LTR retrolelement reverse transcript...   115   6e-23
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678...   115   6e-23
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   114   1e-22
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]              113   2e-22
ref|NP_176271.1| RNA-directed DNA polymerase (reverse transcript...   112   3e-22
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   112   4e-22
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   107   1e-20
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   107   2e-20
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...   107   2e-20
dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like ...   106   3e-20
dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like ...   104   8e-20
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   104   8e-20

>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score =  128 bits (321), Expect = 7e-27
 Identities = 79/304 (25%), Positives = 136/304 (44%), Gaps = 5/304 (1%)
 Frame = +3

Query: 3    SIRVKWIWEVRLKSKSFWAVSCPQDC-PWHWRKILKIRWRFFGLGKCCIGDGNKAFLWYD 179
            S+ V+W+ +  ++  SFW++        W WRK+LK R    G  +  I +G     W+D
Sbjct: 119  SLWVQWLRQYVIRKGSFWSLRDTSTLGSWMWRKLLKYRHLASGFTQYEIRNGKGVSFWHD 178

Query: 180  NWHPLGSSYGSISTRIIYYFASSLDAKVCSIISNGGWKWPSS*FNAVLEVIDNCSVAPNV 359
            NW PLG       TR        + A V   +++   +  +   N +   ++       V
Sbjct: 179  NWSPLGPLIAISGTRGCIDMGIDIHATVAEALTHRRRRHRADHLNQMEAQLEELRTKGLV 238

Query: 360  NVDDMYAWLSTNS----TFFIQSAWNCFRGSIPKVDWARLMWYMGHIPKVAFITWLAVRG 527
              +D+  W         +F  +  W   R   P+ +W + +W+    PK +FITWLA + 
Sbjct: 239  ETEDVVLWKGKGGRFKPSFSTKETWADTREQKPRNEWYQGIWFSHATPKYSFITWLATKN 298

Query: 528  GLATQDKLTQWRILESMSCVFCRSLVEDKNHLFFSCDFIAPIWKQVLWWSXXXXXXXXXX 707
             L+T D++  W    ++SCVFC+   E +NHLFF+C +   +W  +              
Sbjct: 299  RLSTGDRMMSWNAGVNLSCVFCQEQTETRNHLFFTCRYSREVWSGLTSKLLTRHYSTDWT 358

Query: 708  XXXXXXRVNTIGKSSKAEVRKLAW*CSIYLVWFERNRRYYSYEFRPAWDLLDSIMTLVRE 887
                     T+G +++  + + A+   +Y +W ERN R +  E  P+  LL  +   VR 
Sbjct: 359  TILKLLTDKTLG-NNRLFLLRYAFQILVYSIWKERNSRRHGEEPLPSALLLKRLDKEVRN 417

Query: 888  KLAS 899
            KL++
Sbjct: 418  KLST 421


>ref|XP_004148188.1| PREDICTED: uncharacterized protein LOC101204314 [Cucumis sativus]
          Length = 282

 Score =  124 bits (311), Expect = 1e-25
 Identities = 74/253 (29%), Positives = 125/253 (49%), Gaps = 3/253 (1%)
 Frame = +3

Query: 174 YDNWHPLGSSYGSISTRIIYYFASSLDAKVCSIIS-NGGWKWPSS*FNAVLEVIDNCS-V 347
           Y    P+   +G    R+IY   S  DA++   +  +G W+WP   +  ++++ D    V
Sbjct: 33  YGGGGPIIQQFGE---RVIYDAGSRWDARLVDFMGRDGDWRWPLV-YLDLMDIWDRVQGV 88

Query: 348 APNVNVDDMYAWL-STNSTFFIQSAWNCFRGSIPKVDWARLMWYMGHIPKVAFITWLAVR 524
             + +V+D + W+  ++ +F I SAW   R    +V W+ L+W  G+IPK +F  WLA+R
Sbjct: 89  RLSPSVEDRWVWVPGSHDSFSITSAWETIRPHSSRVGWSGLLWGGGNIPKHSFCAWLAIR 148

Query: 525 GGLATQDKLTQWRILESMSCVFCRSLVEDKNHLFFSCDFIAPIWKQVLWWSXXXXXXXXX 704
             L T+ +L++W     +SC+ C    E ++HLFFSC F   IW ++L            
Sbjct: 149 DRLGTRGRLSRWDRSIPLSCLLCGGNYESRDHLFFSCHFGWEIWSRILLLKSSSHRTGYW 208

Query: 705 XXXXXXXRVNTIGKSSKAEVRKLAW*CSIYLVWFERNRRYYSYEFRPAWDLLDSIMTLVR 884
                      IGKS + ++ +L W  +IY +W ERN R +    R    +   I + ++
Sbjct: 209 GVELSWIYNQGIGKSVRRKLWRLLWCATIYFIWQERNHRLHGGSIREPLVVFQLIRSCIK 268

Query: 885 EKLASCSVKVNDI 923
            + AS S  V+ +
Sbjct: 269 VRAASWSDGVHGL 281


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  124 bits (310), Expect = 1e-25
 Identities = 83/310 (26%), Positives = 136/310 (43%), Gaps = 7/310 (2%)
 Frame = +3

Query: 3    SIRVKWIWEVRLKSKSFWAVS-CPQDCPWHWRKILKIRWRFFGLGKCCIGDGNKAFLWYD 179
            S+ VKW+ +  L++ SFW V        W W+K+LK R     L K  +G+G +   WYD
Sbjct: 900  SLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYD 959

Query: 180  NWHPLGSSYGSISTRIIYYFASSLDAKVCSIISNGGWKWPSS*FNAVLEVIDNCSVAPNV 359
            NW  LG        R +     S    V    +N   +   +    V+E     S     
Sbjct: 960  NWSDLGQLLERTGDRGLIDLGISRRMTVEEAWTNRRQRRHRNDVYNVIEDALKKSWDTRT 1019

Query: 360  NVDDMYAWLSTN----STFFIQSAWNCFRGSIPKVDWARLMWYMGHIPKVAFITWLAVRG 527
              +D   W   +    +TF  +  W+  R +  +V W +++W+    PK +F +WLA  G
Sbjct: 1020 ETEDKVLWRGKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIWFSHATPKYSFCSWLAAHG 1079

Query: 528  GLATQDKLTQWRILESMSCVFCRSLVEDKNHLFFSCDFIAPIWKQVLWWSXXXXXXXXXX 707
             L T D++  W    +  C+FC+  +E ++HLFF+C F + IW  +   +          
Sbjct: 1080 RLPTGDRMINWANGIATDCIFCQGTLETRDHLFFTCSFTSVIWVDL---ARGIFKTQYTS 1136

Query: 708  XXXXXXRVNTIGKSSKAE--VRKLAW*CSIYLVWFERNRRYYSYEFRPAWDLLDSIMTLV 881
                     T  +  + E  +R+  +  +IY+VW ERN R +      A  L+  I   +
Sbjct: 1137 HWQSIIEAITNSQHHRVEWFLRRYVFQATIYIVWRERNGRRHGEPPNTASQLVGWIDKQI 1196

Query: 882  REKLASCSVK 911
            R +L+S  +K
Sbjct: 1197 RNQLSSICLK 1206


>gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1447

 Score =  124 bits (310), Expect = 1e-25
 Identities = 87/317 (27%), Positives = 134/317 (42%), Gaps = 14/317 (4%)
 Frame = +3

Query: 3    SIRVKWIWEVRLKSKSFWAVSCPQDC-PWHWRKILKIRWRFFGLGKCCIGDGNKAFLWYD 179
            S+ VKWI    LK+ SFW +        W W+K+LK R       K  + +G +   WYD
Sbjct: 1124 SLWVKWIETNLLKNNSFWIIKSSTTMGSWMWKKLLKYREVAKTFSKIEVHNGQRTSFWYD 1183

Query: 180  NWHPLGSSYGSISTRIIYYFASSLDAKVCSII-SNGGWKWPSS*FNAVLEVIDNCSVAPN 356
            +W  +G     I  + I       D  V  +  ++   +  +   N V  VI        
Sbjct: 1184 DWSCMGRIMNFIGDKGIIDLGIKRDKLVAEVWDTHRSRRHITDYLNQVENVIATSKANRK 1243

Query: 357  VNVDDMYAWLSTNST----FFIQSAWNCFRGSIPKVDWARLMWYMGHIPKVAFITWLAVR 524
               DD+  W   N      F  +  WN  R +  KV W + +W+    PK +F  WLA  
Sbjct: 1244 EKADDV-VWRGRNDIYKPQFSTRDTWNNIRTTATKVTWYKGVWFYQATPKFSFCVWLAAL 1302

Query: 525  GGLATQDKLTQWRILESMSCVFCRSLVEDKNHLFFSCDFIAPIW----KQVLWWSXXXXX 692
              L+T D++  W+ + S SCVFC    + ++HLFF+C + + +W    K +L        
Sbjct: 1303 DRLSTGDRMANWKGVSSGSCVFCNHPTKSRDHLFFNCPYSSEVWTVTAKNIL-------- 1354

Query: 693  XXXXXXXXXXXRVNTIGKSSKAEVR----KLAW*CSIYLVWFERNRRYYSYEFRPAWDLL 860
                        +NT+    +  V     + A+  S+Y +W ERNRR +      A  L+
Sbjct: 1355 -TTRFTTDWHLLLNTVSSLQQNRVENFLVRYAFQASVYSIWSERNRRRHGNTLHSATRLI 1413

Query: 861  DSIMTLVREKLASCSVK 911
              I   VR  L+S  +K
Sbjct: 1414 GWIDKQVRNILSSIRIK 1430


>ref|XP_004173856.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
           sativus]
          Length = 342

 Score =  119 bits (298), Expect = 3e-24
 Identities = 83/306 (27%), Positives = 136/306 (44%), Gaps = 3/306 (0%)
 Frame = +3

Query: 12  VKWIWEVRLKSKSFWAVSCPQDCPWHWRKILKIRWRFFGLGKCCIGDGNKAFLWYDNWHP 191
           +K +W + +KS S W         W    ILK R  +       +G+G K  +W   W  
Sbjct: 56  LKILWLLLVKSGSLWV-------SWVESYILKGRSLWEIDAGMEVGNGRKCRVWLVPWIQ 108

Query: 192 LGSSYGSISTRIIYYFASSLDAKVCSIIS-NGGWKWPSS*FNAVLEVIDNCS-VAPNVNV 365
            G        R+IY   S  D ++   +  NG W+W     + ++++ D    V P+ +V
Sbjct: 109 GGPIIQQFGERVIYDAGSRWDVRLVDFMGRNGDWRWSLVSLD-LMDIWDRVQGVRPSPSV 167

Query: 366 DDMYAWL-STNSTFFIQSAWNCFRGSIPKVDWARLMWYMGHIPKVAFITWLAVRGGLATQ 542
           +D + W+  +  +F I SAW   R    +V W+ L+W  G+IPK +F  WLA+R  L+T+
Sbjct: 168 EDRWVWVPGSRDSFSITSAWETIRPHSSRVGWSGLLWGGGNIPKHSFCAWLAIRDRLSTR 227

Query: 543 DKLTQWRILESMSCVFCRSLVEDKNHLFFSCDFIAPIWKQVLWWSXXXXXXXXXXXXXXX 722
           D+L++W     +SC+ C    E +NHLFF                               
Sbjct: 228 DRLSRWDRSIPLSCLLCGGNYESRNHLFFLV-------------ILGGRFGRGSFCLCHL 274

Query: 723 XRVNTIGKSSKAEVRKLAW*CSIYLVWFERNRRYYSYEFRPAWDLLDSIMTLVREKLASC 902
              + IGKS + ++ +L W  +IY +W ERN R +    R        +  L+R  + +C
Sbjct: 275 LIESGIGKSVRRKLLRLLWCATIYFIWQERNHRLHGGAVREPM----VVFQLIRSCIKAC 330

Query: 903 SVKVND 920
           +   +D
Sbjct: 331 AASWSD 336


>ref|XP_004163799.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
           sativus]
          Length = 288

 Score =  117 bits (294), Expect = 1e-23
 Identities = 70/225 (31%), Positives = 115/225 (51%), Gaps = 3/225 (1%)
 Frame = +3

Query: 3   SIRVKWIWEVRLKSKSFWAVSCPQDCPWHWRKILKIRWRFFGLGKCCIGDGNKAFLWYDN 182
           S+ V W+    LK +S W +       W +R IL+ R       K  +G+G K  +W D 
Sbjct: 48  SLWVAWVEAYILKGRSLWEIDVGVGRSWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDP 107

Query: 183 WHPLGSSYGSISTRIIYYFASSLDAKVCSIIS-NGGWKWPSS*FNAVLEVIDNCS-VAPN 356
               G        R+IY   S  DA++   +  +G W+W     + ++++ D    V P+
Sbjct: 108 RIQGGPIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWSLVSLD-LMDIWDRIQGVRPS 166

Query: 357 VNVDDMYAWL-STNSTFFIQSAWNCFRGSIPKVDWARLMWYMGHIPKVAFITWLAVRGGL 533
            +V+DM+  +  ++ +F I SA    R    +V W+ L+W  G+IPK +F TWLA++  L
Sbjct: 167 PSVEDMWVRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIPKHSFYTWLAIKDRL 226

Query: 534 ATQDKLTQWRILESMSCVFCRSLVEDKNHLFFSCDFIAPIWKQVL 668
            T+D+L++W     +SC+ C    E ++HLFF C F   IW ++L
Sbjct: 227 GTRDRLSRWDSSIPLSCILCGRNYESRDHLFFPCPFGWEIWSRIL 271


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  116 bits (291), Expect = 2e-23
 Identities = 73/229 (31%), Positives = 103/229 (44%), Gaps = 8/229 (3%)
 Frame = +3

Query: 3    SIRVKWIWEVRLKSKSFWAVSCPQDCPWHWRKILKIRWRFFGLGKCCIGDGNKAFLWYDN 182
            S+   W     L   SFWAV   Q   W W+++L +R        C +G+G KA  WYDN
Sbjct: 893  SLWADWQHLHHLSRGSFWAVEGGQSDSWTWKRLLSLRPLAHQFLVCKVGNGLKADYWYDN 952

Query: 183  WHPLGSSYGSISTRIIYYFASSLDAKVCSIISNGGWKWPSS*FNAVLEVIDN-CSV-APN 356
            W  LG  +  I           L AKV S  S  GW+ P S       + D+ C+V  P+
Sbjct: 953  WTSLGPLFRIIGDIGPSSLRVPLLAKVASAFSEDGWRLPVSRSAPAKGIHDHLCTVPVPS 1012

Query: 357  VNVDDM--YAWLSTNST----FFIQSAWNCFRGSIPKVDWARLMWYMGHIPKVAFITWLA 518
               +D+  Y W S N      F     W   R       WA  +W+ G +PK AF  W++
Sbjct: 1013 TAQEDVDRYEW-SVNGFLCQGFSAAKTWEAIRPKATVKSWASSIWFKGAVPKYAFNMWVS 1071

Query: 519  VRGGLATQDKLTQWRILESMSCVFCRSLVEDKNHLFFSCDFIAPIWKQV 665
                L T+ +L  W  ++S +CV C    E ++HL   C+F A +W+ V
Sbjct: 1072 HLNRLLTRQRLASWGHIQSDACVLCSFASESRDHLLLICEFSAQVWRLV 1120


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  115 bits (287), Expect = 6e-23
 Identities = 69/233 (29%), Positives = 99/233 (42%), Gaps = 12/233 (5%)
 Frame = +3

Query: 3    SIRVKWIWEVRLKSKSFWAVSCPQDCPWHWRKILKIRWRFFGLGKCCIGDGNKAFLWYDN 182
            S+  +W    RL   SFW V+  Q  PW W+ +L +R       K  +G+G     W+D 
Sbjct: 753  SLWAQWQRHHRLGHASFWQVNALQTDPWTWKMLLNLRPLAEKFIKAKVGNGGTVSFWFDC 812

Query: 183  WHPLG------SSYGSISTRIIYYFASSLDAKVCSIISNGGWKWPSS*FNAVLEVIDNCS 344
            W  LG         GS   RI +       AKV   I   GW+ P S       ++ + +
Sbjct: 813  WTSLGPLIKYLGDVGSRPLRIPF------SAKVADAIDGSGWRLPLSRSLTADSILSHLA 866

Query: 345  VAPNVN---VDDMYAWLSTN---STFFIQSAWNCFRGSIPKVDWARLMWYMGHIPKVAFI 506
              P  +   V D Y+W   +     F     W   R   P   WAR +W+ G +PK AF 
Sbjct: 867  SLPPPSPLMVSDSYSWCVDDVDCQGFSAAKTWEVLRPRRPVKRWARSVWFKGAVPKHAFN 926

Query: 507  TWLAVRGGLATQDKLTQWRILESMSCVFCRSLVEDKNHLFFSCDFIAPIWKQV 665
             W A    L T+ +L  W ++ S  C  C    E ++HL   CDF + +W+ V
Sbjct: 927  FWTAQLNRLPTRQRLVSWGLVSSAECCLCSFDTETRDHLLLLCDFSSQVWRMV 979


>gb|AAD26953.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 323

 Score =  115 bits (287), Expect = 6e-23
 Identities = 81/298 (27%), Positives = 121/298 (40%), Gaps = 10/298 (3%)
 Frame = +3

Query: 30  VRLKSKSFWAVSCPQDCPWHWRKILKIRWRFFGLGKCCIGDGNKAFLWYDNWHPLGSSYG 209
           + L   SFW ++      W WRK+ K+R        C IG G  A  W DNW   G    
Sbjct: 3   ISLSKTSFWTLNPYSSGSWIWRKLCKLRPLARPFLVCEIGSGETASFWQDNWTGQGPLID 62

Query: 210 SISTRIIYYFASSLDAKVCSIISNGGWKWPSS*FNAVLEVIDNCSVAPNVNV------DD 371
              T         L+A V   +    W W SS  +    +    SV P+         DD
Sbjct: 63  LTGTNGPRSVGMPLNAVVRDALRGDNW-WLSSSRSRNPSIALLKSVLPSSESMIECQHDD 121

Query: 372 MYAWL----STNSTFFIQSAWNCFRGSIPKVDWARLMWYMGHIPKVAFITWLAVRGGLAT 539
           +Y W     + ++ F     W         V W + +W+   IPK AFI W+A    L T
Sbjct: 122 VYKWKPDHHAPSNIFSASKTWTALNPDGVLVPWQKSVWFKDRIPKHAFICWVAAWKRLHT 181

Query: 540 QDKLTQWRILESMSCVFCRSLVEDKNHLFFSCDFIAPIWKQVLWWSXXXXXXXXXXXXXX 719
           +D+LTQW +     CV C  + E  +HLFF C F   IW   +  +              
Sbjct: 182 RDRLTQWGLNIPTVCVLCNVVDETHDHLFFQCQFSNEIWSFFMIRAGMTPPHLFGPILLW 241

Query: 720 XXRVNTIGKSSKAEVRKLAW*CSIYLVWFERNRRYYSYEFRPAWDLLDSIMTLVREKL 893
               ++    + + + KL +  S+YL+W ERN R ++   R    ++  +  L+R +L
Sbjct: 242 LKSASS--SKNLSLIIKLLFQASVYLIWRERNCRIHTTHSRTPPTIIKEVQQLIRARL 297


>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
           putative protein [Arabidopsis thaliana]
          Length = 473

 Score =  115 bits (287), Expect = 6e-23
 Identities = 84/282 (29%), Positives = 115/282 (40%), Gaps = 9/282 (3%)
 Frame = +3

Query: 3   SIRVKWIWEVRLKSKSFWAVSCPQDC-PWHWRKILKIRWRFFGLGKCCIGDGNKAFLWYD 179
           S+ VKWI    LK  SFWAV        W WRKILK R     L K  I +G +   WYD
Sbjct: 149 SLWVKWIQSSLLKKVSFWAVRENTSLGSWMWRKILKFRDIARTLCKVEINNGARTSFWYD 208

Query: 180 NWHPLGSSYGSISTRIIYYFASSLDAKVCSIISNGGWKWPSS*FNAVLEVIDNCSVAPNV 359
           +W  LG    S   R       +  A V     N   +   + F   +E     S     
Sbjct: 209 DWSDLGRLIDSAGDRGAIDLGINKHATVVEAWGNRRRRRHRTNFLNRVEERLILSWNSRN 268

Query: 360 NVDDMYAWLSTN----STFFIQSAWNCFRGSIPKVDWARLMWYMGHIPKVAFITWLAVRG 527
             +D   W        S F  +  WN  R    KV W + +W+   IPK AF  WLAV  
Sbjct: 269 QAEDRALWKGKENRFRSIFSTKDTWNHIRTVSNKVAWYKGVWFAQAIPKHAFCMWLAVHN 328

Query: 528 GLATQDKLTQWRILESMSCVFCRSLVEDKNHLFFSCDFIAPIWKQVLWWSXXXXXXXXXX 707
            L+T D++T W +    +C+ C   +E ++HLFFSC F   IW+ +              
Sbjct: 329 RLSTGDRMTLWNMGVDATCILCNKALESRDHLFFSCPFATEIWEPL-----AKTIYNTCF 383

Query: 708 XXXXXXRVNTIGKSSKAEVRKLAW*C----SIYLVWFERNRR 821
                  +N + ++    +      C    +IY +W ERN R
Sbjct: 384 YTDWQTIINNVSRNWPDRIAGFLARCILQVTIYTLWRERNER 425


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  114 bits (284), Expect = 1e-22
 Identities = 68/233 (29%), Positives = 99/233 (42%), Gaps = 12/233 (5%)
 Frame = +3

Query: 3    SIRVKWIWEVRLKSKSFWAVSCPQDCPWHWRKILKIRWRFFGLGKCCIGDGNKAFLWYDN 182
            S+  +W    RL   SFW V+  Q  PW W+ +L +R       K  +G+G     W+D 
Sbjct: 753  SLWAQWQRHHRLGHASFWQVNALQTDPWTWKMLLNLRPLAEKFIKAKVGNGGTVSFWFDC 812

Query: 183  WHPLG------SSYGSISTRIIYYFASSLDAKVCSIISNGGWKWPSS*FNAVLEVIDNCS 344
            W  LG         GS   RI +       AKV   I   GW+ P S       ++ + +
Sbjct: 813  WTSLGPLIKYLGDVGSRPLRIPF------SAKVADAIDGSGWRLPLSRSLTADSILSHLA 866

Query: 345  VAPNVN---VDDMYAWLSTN---STFFIQSAWNCFRGSIPKVDWARLMWYMGHIPKVAFI 506
              P  +   V D Y+W   +     F     W   R   P   WA+ +W+ G +PK AF 
Sbjct: 867  SLPPPSPLMVSDSYSWCVDDVDCQGFSAAKTWEVLRPRRPVKRWAKSVWFKGAVPKHAFN 926

Query: 507  TWLAVRGGLATQDKLTQWRILESMSCVFCRSLVEDKNHLFFSCDFIAPIWKQV 665
             W A    L T+ +L  W ++ S  C  C    E ++HL   CDF + +W+ V
Sbjct: 927  FWTAQLNRLPTRQRLVSWGLVSSAECCLCSFDTETRDHLLLLCDFSSQVWRMV 979


>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
          Length = 1161

 Score =  113 bits (283), Expect = 2e-22
 Identities = 76/279 (27%), Positives = 118/279 (42%), Gaps = 9/279 (3%)
 Frame = +3

Query: 84   WHWRKILKIRWRFFGLGKCCIGDGNKAFLWYDNWHPLGSSYGSISTRIIYYFASSLDAKV 263
            W WRK+ K+R        C +G G  A  W+DNW   G                 L++ V
Sbjct: 853  WIWRKLCKLRPFARPFIICEVGSGVTASFWHDNWTDHGPLLHLTGPAGPLLAGLPLNSVV 912

Query: 264  CSIISNGGWKWPSS*F-NAVLEVIDNC--SVAPNVNV--DDMYAWL----STNSTFFIQS 416
               + +  W+  SS   N V+ ++     S A  ++   DD Y W     + ++ F    
Sbjct: 913  RDALRDDTWRISSSRSRNPVITLLQRVLPSAASLIDCPHDDTYLWKIGHHAPSNRFSTAD 972

Query: 417  AWNCFRGSIPKVDWARLMWYMGHIPKVAFITWLAVRGGLATQDKLTQWRILESMSCVFCR 596
             W+  + S   V W + +W+  H+PK AFI W+     L T+D+L +W      +CV C 
Sbjct: 973  TWSYLQPSSTSVLWHKAVWFKDHVPKQAFICWVVAHNRLHTRDRLRRWGFSIPPTCVLCN 1032

Query: 597  SLVEDKNHLFFSCDFIAPIWKQVLWWSXXXXXXXXXXXXXXXXRVNTIGKSSKAEVRKLA 776
             L E + HLFF C F + IW    +                   +      +   + KL 
Sbjct: 1033 DLDESREHLFFRCQFSSEIWS--FFMRALNLNPPPQFMHCLLWTLTASRDRNITLITKLL 1090

Query: 777  W*CSIYLVWFERNRRYYSYEFRPAWDLLDSIMTLVREKL 893
            +  S+Y +W ERN R +S   RPA  ++  I  +VR +L
Sbjct: 1091 FHASVYFIWRERNLRIHSNSVRPAHLIIKEIQLIVRARL 1129


>ref|NP_176271.1| RNA-directed DNA polymerase (reverse transcriptase)-related protein
           [Arabidopsis thaliana] gi|332195602|gb|AEE33723.1|
           RNA-directed DNA polymerase (reverse
           transcriptase)-related protein [Arabidopsis thaliana]
          Length = 289

 Score =  112 bits (281), Expect = 3e-22
 Identities = 66/239 (27%), Positives = 110/239 (46%), Gaps = 12/239 (5%)
 Frame = +3

Query: 135 KCCIGDGNKAFLWYDNWHPLG------SSYGSISTRIIYYFASSLDAKVCSIISNGGWKW 296
           KC +G+G  A  W+D+W  LG        YGS S RI       L+A+V   +   GWK 
Sbjct: 14  KCNLGNGRIAHFWHDSWTSLGPLIKVMGDYGSRSLRI------PLNARVVEALGVNGWKL 67

Query: 297 P---SS*FNAVLEVIDNCSVAPNVNVDDMYAWLSTNST---FFIQSAWNCFRGSIPKVDW 458
           P   S+   A+ + I   +      ++D + W+        F     W+  R   P++DW
Sbjct: 68  PLSRSAPAQAIHDHISTITTPSPATIEDSFDWVVGGVVCQGFSSARTWDAIRPRAPELDW 127

Query: 459 ARLMWYMGHIPKVAFITWLAVRGGLATQDKLTQWRILESMSCVFCRSLVEDKNHLFFSCD 638
           A+ +W+ G +PK AF  W++    L T+ +L  W  ++S  C  C    E ++HL FSC+
Sbjct: 128 AKAVWFKGAVPKHAFNMWISQLDRLPTRQRLASWGHIQSFDCCLCTIETESRDHLLFSCE 187

Query: 639 FIAPIWKQVLWWSXXXXXXXXXXXXXXXXRVNTIGKSSKAEVRKLAW*CSIYLVWFERN 815
           F A +W+ + +                   + +   S+ + +RK++    IY +W +RN
Sbjct: 188 FAAQVWR-LAFSRLCPRQRLFCSWAELLSWMRSSSSSAPSLLRKVSAHAIIYNIWRQRN 245


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  112 bits (280), Expect = 4e-22
 Identities = 72/305 (23%), Positives = 133/305 (43%), Gaps = 6/305 (1%)
 Frame = +3

Query: 3    SIRVKWIWEVRLKSKSFWAVSCPQDC-PWHWRKILKIRWRFFGLGKCCIGDGNKAFLWYD 179
            S+ V WIW   ++  +FW+ +       W W+K+LK R     + K  + +G+    WYD
Sbjct: 1197 SLWVTWIWTFIIRKGTFWSANERSSLGSWMWKKLLKYRELAKSMHKVEVRNGSSTSFWYD 1256

Query: 180  NWHPLGSSYGSISTRIIYYFASSLDAKVCSII-SNGGWKWPSS*FNAVLEVIDNCSVAPN 356
            +W  LG       TR +      L+  + +++ ++   +  ++ +N +   I        
Sbjct: 1257 HWSHLGRLLDITGTRRVIDLGIPLETNLETVLRTHQHRQHRAAIYNRINAEIQRLQQQER 1316

Query: 357  VNVDDMYAWLST----NSTFFIQSAWNCFRGSIPKVDWARLMWYMGHIPKVAFITWLAVR 524
                D+  W S     N  F  +  WN  R   P+ +W + +W+    PK +F+ WL V+
Sbjct: 1317 EAGPDISLWRSLKNDFNKRFITKVTWNNVRTHQPQQNWYKGVWFPYSTPKYSFLLWLTVQ 1376

Query: 525  GGLATQDKLTQWRILESMSCVFCRSLVEDKNHLFFSCDFIAPIWKQVLWWSXXXXXXXXX 704
              L+T D++  W   + ++C  C +  E ++HLFFSC + + +W+ +             
Sbjct: 1377 NRLSTGDRIKAWNSGQLVTCTLCNNAEETRDHLFFSCQYTSYVWEALTQRLLSTNYSRDW 1436

Query: 705  XXXXXXXRVNTIGKSSKAEVRKLAW*CSIYLVWFERNRRYYSYEFRPAWDLLDSIMTLVR 884
                     + + +      R + +  SIY +W ERN R +     P   L+  I   VR
Sbjct: 1437 NRLFTLLCTSNLPRDHLFLFRYV-FQASIYHIWRERNARRHGEISSPTNRLIKLIDKTVR 1495

Query: 885  EKLAS 899
             +++S
Sbjct: 1496 NRISS 1500


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score =  107 bits (268), Expect = 1e-20
 Identities = 81/313 (25%), Positives = 126/313 (40%), Gaps = 10/313 (3%)
 Frame = +3

Query: 3    SIRVKWIWEVRLKSKSFWAVSCPQDC-PWHWRKILKIRWRFFGLGKCCIGDGNKAFLWYD 179
            S+ VKW     LK +SFW++        W WR++LK R       K  + +G     W+D
Sbjct: 621  SLWVKWTRMNLLKKESFWSIGTHSTLGSWIWRRLLKHREVAKSFCKIEVNNGVNTSFWFD 680

Query: 180  NWHPLGSSYGSISTRIIYYFASSLDAKVCSIISNGGWKWPS-S*FNAVLEVIDNCSVAPN 356
            NW   G        R       S    +    S    K       N   E++       N
Sbjct: 681  NWSEKGPLINLTGARGAIDMGISRHMTLAEAWSRRRRKRHRVEILNEFEEILLQKYQHRN 740

Query: 357  VNVDDMYAWLSTNSTF----FIQSAWNCFRGSIPKVDWARLMWYMGHIPKVAFITWLAVR 524
            + ++D   W      F      +  WN  R S  +  W + +W+    PK +F  WLA+R
Sbjct: 741  IELEDAILWRGKEDVFKARFSTKDTWNHIRTSSNQRAWHKGVWFAHATPKFSFCAWLAIR 800

Query: 525  GGLATQDKLTQWRILESMSCVFCRSLVEDKNHLFFSCDFIAPIWKQVLWWSXXXXXXXXX 704
              L+T D++  W      +CVFC S +E ++HLFF C + + IW      S         
Sbjct: 801  NRLSTGDRMMTWNNGTPTTCVFCSSPMETRDHLFFQCCYSSEIWT-----SIAKNVYKDR 855

Query: 705  XXXXXXXRVNTIGKSSKAEVR----KLAW*CSIYLVWFERNRRYYSYEFRPAWDLLDSIM 872
                    VN I  S    ++    +  +  SI+ +W ERN R +  + R A +L+  I 
Sbjct: 856  FSTKWSAVVNYISDSQPDRIQSFLSRYTFQVSIHSIWRERNSRRHGEKSRSASNLIRQID 915

Query: 873  TLVREKLASCSVK 911
              +R +L++   K
Sbjct: 916  KTIRNQLSTIKKK 928


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  107 bits (266), Expect = 2e-20
 Identities = 65/220 (29%), Positives = 98/220 (44%), Gaps = 7/220 (3%)
 Frame = +3

Query: 3    SIRVKWIWEVRL-KSKSFWAVSCPQDCPWHWRKILKIRWRFFGLGKCCIGDGNKAFLWYD 179
            S+ V W  +  L KS SFW         W+W+ +L++R       +C +G+G  A  W+D
Sbjct: 790  SLWVAWHKQHSLGKSTSFWNQPEKPHDSWNWKCLLRLRVVAERFIRCNVGNGRDASFWFD 849

Query: 180  NWHPLGSSYGSISTRIIYYFASSLDAKVCSIISNGGWKWPSS*FNAVLEV---IDNCSVA 350
            NW P G     +           L+AK+  + ++ GW       +  L +   + N S+ 
Sbjct: 850  NWTPFGPLIKFLGNEGPRDLRVHLNAKISDVCTSEGWSIADPRSDQALSLHTHLTNISMP 909

Query: 351  PNVNVDDMYAWLSTNST---FFIQSAWNCFRGSIPKVDWARLMWYMGHIPKVAFITWLAV 521
             +    D Y W+  N     F   + W+  R S   V WAR +W+ G  PK AF  W A 
Sbjct: 910  SDAQDLDSYDWVVDNKVCQGFSAAATWSALRPSSAPVPWARAVWFKGATPKHAFHLWTAH 969

Query: 522  RGGLATQDKLTQWRILESMSCVFCRSLVEDKNHLFFSCDF 641
               L T+ +L  W +    +C  C    E ++HLF SCDF
Sbjct: 970  LDRLPTKVRLASWGMQIDTTCGLCSLHPETRDHLFLSCDF 1009


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  107 bits (266), Expect = 2e-20
 Identities = 76/308 (24%), Positives = 131/308 (42%), Gaps = 10/308 (3%)
 Frame = +3

Query: 3    SIRVKWIWEVRLKSKSFWAVSCPQDC-PWHWRKILKIRWRFFGLGKCCIGDGNKAFLWYD 179
            S+ VKW     LK +SFW+++       W W+K+LK R       +  + +G +   W+D
Sbjct: 305  SLWVKWSKMNLLKQESFWSLTPNSSLGSWMWKKMLKYRETAKPFSRVEVNNGARTSFWFD 364

Query: 180  NWHPLGSSYGSISTRIIYYFASSLDAKVCSIISNGGW-KWPSS*FNAVLEVIDNCSVAPN 356
            NW  +G        R       S +  V    SN    K  +   N +   ++      N
Sbjct: 365  NWSGMGHLMDVTGQRGQIDLGISRNKTVAEAWSNRRRRKHRTEQLNDIEAALNQKYQTRN 424

Query: 357  VNVDDMYAWLSTN----STFFIQSAWNCFRGSIPKVDWARLMWYMGHIPKVAFITWLAVR 524
            +  +D   W        ++F  +  WN  R    +V W + +W+    PK  F TWLA+R
Sbjct: 425  LLREDATLWRGKGDVFKTSFSTKDTWNQVRKKSNEVAWYKGVWFSHSTPKYQFCTWLALR 484

Query: 525  GGLATQDKLTQWRILESMSCVFCRSLVEDKNHLFFSCDFIAPIWKQVLWWSXXXXXXXXX 704
              L+T  ++  W     + C FC + +E ++HLFFSC + + IW  +             
Sbjct: 485  NRLSTGYRMQLWNNGSDVKCTFCSTSIETRDHLFFSCSYASAIWTAI-----AKNVLQHR 539

Query: 705  XXXXXXXRVNTIGKSSKAEVR----KLAW*CSIYLVWFERNRRYYSYEFRPAWDLLDSIM 872
                    VN I ++    +R    +  +  +++ VW ERN R +  E R + +L+  + 
Sbjct: 540  FSTDWQTIVNYISETQTDRIRSFLSRYIFQLTVHTVWKERNDRRHGEEPRTSANLISWMD 599

Query: 873  TLVREKLA 896
              +R +L+
Sbjct: 600  KQIRNQLS 607


>dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana] gi|93007380|gb|ABE97193.1|
           hypothetical protein At5g13655 [Arabidopsis thaliana]
          Length = 385

 Score =  106 bits (264), Expect = 3e-20
 Identities = 65/228 (28%), Positives = 100/228 (43%), Gaps = 6/228 (2%)
 Frame = +3

Query: 3   SIRVKWIWEVRLKSKSFWAVS-CPQDCPWHWRKILKIRWRFFGLGKCCIGDGNKAFLWYD 179
           S+ V W+ +  L+  S WAV        W W+K+LK R +     K  + +G     WYD
Sbjct: 59  SLWVDWVKKHLLRGGSLWAVKETSSRGSWIWKKLLKYRDKAKCFHKVDVRNGESTSFWYD 118

Query: 180 NWHPLGSSYGSISTRIIYYFASSLDAKVCS-IISNGGWKWPSS*FNAVLEVIDNCSVAPN 356
           +W  LG  Y     R         D+ + S I++    K      NAV   I     +  
Sbjct: 119 SWSSLGCLYDKFGERGCIDMGIPKDSTLSSAIMTTRRRKHRQPLLNAVETEIQKQKQSRI 178

Query: 357 VNVDDMYAWLSTNS----TFFIQSAWNCFRGSIPKVDWARLMWYMGHIPKVAFITWLAVR 524
           V   D+  W         TF  +  W+  R + P++   R +W+    PK A +TWL VR
Sbjct: 179 VTERDVALWKGKEDGFHPTFLSKETWSQIRNTQPEMQGYRGIWFSNATPKYALLTWLMVR 238

Query: 525 GGLATQDKLTQWRILESMSCVFCRSLVEDKNHLFFSCDFIAPIWKQVL 668
             +AT +K+  W      SC+FC++  E + HLFF C +   +W  ++
Sbjct: 239 NRIATGEKMGLWNQNTDTSCIFCKNPNETREHLFFQCVYTRKVWNGLI 286


>dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 637

 Score =  104 bits (260), Expect = 8e-20
 Identities = 61/223 (27%), Positives = 100/223 (44%), Gaps = 5/223 (2%)
 Frame = +3

Query: 3   SIRVKWIWEVRLKSKSFWAVSCPQDC-PWHWRKILKIRWRFFGLGKCCIGDGNKAFLWYD 179
           S+ V+W+++  ++ ++FW+V        W W+KILK R +     +  +  G     W+D
Sbjct: 123 SLWVQWVYKNLIRKETFWSVKENTSLGSWLWKKILKQRDKARLFHQMEVRSGTTTSFWHD 182

Query: 180 NWHPLGSSYGSISTRIIYYFASSLDAKVCSIISNGGWKWPSS*FNAVLEVIDNCSVAPNV 359
           +W PLG  +  + +R       +  A V  ++     K   + F   +E           
Sbjct: 183 HWSPLGRLHQHLGSRGTIDLGIATQATVAEVLDTHRRKRHRADFLNQIENHIELVRQARS 242

Query: 360 NVDDMYAWL----STNSTFFIQSAWNCFRGSIPKVDWARLMWYMGHIPKVAFITWLAVRG 527
              D   W     S   +F     W   R    + +W R +W+    PK +F+TWLA   
Sbjct: 243 QESDRSLWKQKEDSFKGSFSSPKTWQQIRTISNECEWYRGVWFPSSTPKYSFVTWLAFHN 302

Query: 528 GLATQDKLTQWRILESMSCVFCRSLVEDKNHLFFSCDFIAPIW 656
            LAT D+L +W      +CVFC   +E ++HLFFSC + + IW
Sbjct: 303 RLATGDRLYKWNSEARATCVFCDEELETRDHLFFSCPYSSQIW 345


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  104 bits (260), Expect = 8e-20
 Identities = 81/284 (28%), Positives = 118/284 (41%), Gaps = 8/284 (2%)
 Frame = +3

Query: 3    SIRVKWIWEVRLKSKSFWAVSCPQDCPWHWRKILKIRWRFFGLGKCCIGDGNKAFLWYDN 182
            S+ V W    RL+  +FW         W W+ IL +R       +  +G+G     WYD+
Sbjct: 892  SLWVAWNHANRLRHVNFWNAEAASHHSWIWKAILGLRPLAKRFLRGAVGNGQLLSYWYDH 951

Query: 183  WHPLGSSYGSISTRIIYYFASSLDAKVCSIISNGGWKWPSS*F-NAVLEVIDNC---SVA 350
            W  LG    +I             A V    S+ GW  PS+   NA L  + +    S A
Sbjct: 952  WSNLGPLIEAIGASGPQLTGIHESAVVTEASSSTGWILPSARTRNASLANLRSTLLNSPA 1011

Query: 351  PNVNV-DDMYAWL---STNSTFFIQSAWNCFRGSIPKVDWARLMWYMGHIPKVAFITWLA 518
            P+ +  +D Y W    S++++F  +  W C R       WA  +WY G IPK AF  W+A
Sbjct: 1012 PSGDRGEDTYTWYIEGSSSTSFSSKLTWECLRQRDTTKLWAAAVWYKGCIPKYAFNFWVA 1071

Query: 519  VRGGLATQDKLTQWRILESMSCVFCRSLVEDKNHLFFSCDFIAPIWKQVLWWSXXXXXXX 698
                L  + + T W       C  C+   E ++HLF  C   + IW+QVL          
Sbjct: 1072 HLNRLPVRARTTHWSTNRPSLCCVCQRETETRDHLFIHCTLGSLIWQQVLARFGRSQMFR 1131

Query: 699  XXXXXXXXXRVNTIGKSSKAEVRKLAW*CSIYLVWFERNRRYYS 830
                       N    S    ++KLA   +I+ +W ERN R +S
Sbjct: 1132 EWKDIIEWMLSNQ--GSFSGTLKKLAVQTAIFHIWKERNSRLHS 1173