BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia22_contig00006867
         (2032 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s...   972   0.0  
emb|CBI16226.3| unnamed protein product [Vitis vinifera]              968   0.0  
ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao...   934   0.0  
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s...   928   0.0  
ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citr...   911   0.0  
ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III s...   908   0.0  
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s...   908   0.0  
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s...   901   0.0  
ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arab...   892   0.0  
ref|XP_006400888.1| hypothetical protein EUTSA_v10012446mg [Eutr...   888   0.0  
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s...   888   0.0  
ref|XP_006279465.1| hypothetical protein CARUB_v10025743mg [Caps...   885   0.0  
dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Ar...   885   0.0  
ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana...   885   0.0  
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [...   884   0.0  
ref|XP_004505923.1| PREDICTED: DNA-directed RNA polymerase III s...   874   0.0  
ref|XP_007132141.1| hypothetical protein PHAVU_011G070100g [Phas...   874   0.0  
gb|EYU39043.1| hypothetical protein MIMGU_mgv1a000232mg [Mimulus...   870   0.0  
ref|NP_001190573.1| nuclear RNA polymerase C1 [Arabidopsis thali...   870   0.0  
ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III s...   869   0.0  

>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
            vinifera]
          Length = 1383

 Score =  972 bits (2513), Expect = 0.0
 Identities = 482/654 (73%), Positives = 555/654 (84%), Gaps = 9/654 (1%)
 Frame = +3

Query: 96   FTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGLLDSRMGP 275
            FTKEPYIED GPRK+ SI+F+L SE+EI K AEVQ+W+  YYD ++KPIE+GLLD RMGP
Sbjct: 7    FTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLLDPRMGP 66

Query: 276  PNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRILLAEIPR 455
             NKNG CATC G+F  CPGH GYL L LPVYNVGYL+ I +ILKCICKSCSR+LL E   
Sbjct: 67   ANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVLLDEKAS 126

Query: 456  KDYLRRMRTQKI-AQKKTDMQKIIIKTCNTPGLKN----CSRCGYVNGIVKKATGMLGII 620
            KDYL++MR+QK+ A KK ++ K I++ C           CSRCGY+NGIVKKA  +LGII
Sbjct: 127  KDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAVSVLGII 186

Query: 621  HDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEVLYLADR 800
            HDRSKIAD S+EEC +A+SH KE S+ S ++V +L P KVLSLFK+M+DEDC++L LA+R
Sbjct: 187  HDRSKIADGSLEECSSAISHTKE-SKASFSVVDILNPVKVLSLFKRMMDEDCDLLNLAER 245

Query: 801  PEKLIITSIAVPPTVIRPSVLV-GGTRSNENDITERLKRIIQANARVRTMLD---GTNRS 968
            PEKL++T+I VPP  IRPSV + GGT+SNEND+TERLKRIIQANA +   L     T++ 
Sbjct: 246  PEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTGSTSKC 305

Query: 969  QTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTGR 1148
               W+YLQIEVAQYINS  +GVP  MQA RPLSGFVQRLKGKQGRFR NLS KRVE+TGR
Sbjct: 306  LAGWDYLQIEVAQYINSDVRGVPLAMQAARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 365

Query: 1149 TVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAKFLAFPDG 1328
            TVISPDPNLKITEV +PILMA+ L++PERV+ HNIEKLRQC+ NG  KYPGAK + +PDG
Sbjct: 366  TVISPDPNLKITEVAIPILMAKILSYPERVSHHNIEKLRQCILNGPFKYPGAKLIRYPDG 425

Query: 1329 SKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRTLR 1508
            S  SLMF GRKR+ADELK GYIV+RHLEDGDVVLFNRQPSLHRMSIM HRA+IMPWRTLR
Sbjct: 426  SMRSLMFSGRKRFADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLR 485

Query: 1509 FNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFLT 1688
            FNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL LMGVQNNLCTPKNGEILVASTQDFLT
Sbjct: 486  FNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT 545

Query: 1689 SSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNAS 1868
            SSFLITRKDTFYDRAAFSLMCSYMGDGMD VDLPTP I KP+ELWTGKQLF+VL+RP+A+
Sbjct: 546  SSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPAIIKPVELWTGKQLFNVLLRPHAN 605

Query: 1869 LRVYVNLTVTEKTFTKSWKREKTMCPNDGFVYFRNSELISGQLGKATLGNGDKN 2030
            +RVY+NLTV EKT+ K  + ++TMCP+DGFVYFRNSELISGQLGKATLGNG+K+
Sbjct: 606  VRVYLNLTVMEKTYNKR-RGKETMCPSDGFVYFRNSELISGQLGKATLGNGNKD 658


>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
          Length = 1819

 Score =  968 bits (2503), Expect = 0.0
 Identities = 481/654 (73%), Positives = 554/654 (84%), Gaps = 9/654 (1%)
 Frame = +3

Query: 96   FTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGLLDSRMGP 275
            FTKEPYIED GPRK+ SI+F+L SE+EI K AEVQ+W+  YYD ++KPIE+GLLD RMGP
Sbjct: 7    FTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLLDPRMGP 66

Query: 276  PNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRILLAEIPR 455
             NKNG CATC G+F  CPGH GYL L LPVYNVGYL+ I +ILKCICKSCSR+LL E   
Sbjct: 67   ANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVLLDEKAS 126

Query: 456  KDYLRRMRTQKI-AQKKTDMQKIIIKTCNTPGLKN----CSRCGYVNGIVKKATGMLGII 620
            KDYL++MR+QK+ A KK ++ K I++ C           CSRCGY+NGIVKKA  +LGII
Sbjct: 127  KDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAVSVLGII 186

Query: 621  HDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEVLYLADR 800
            HDRSKIAD S+EEC +A+SH KE S+ S ++V +L P KVLSLFK+M+DEDC++L LA+R
Sbjct: 187  HDRSKIADGSLEECSSAISHTKE-SKASFSVVDILNPVKVLSLFKRMMDEDCDLLNLAER 245

Query: 801  PEKLIITSIAVPPTVIRPSVLV-GGTRSNENDITERLKRIIQANARVRTMLD---GTNRS 968
            PEKL++T+I VPP  IRPSV + GGT+SNEND+TERLKRIIQANA +   L     T++ 
Sbjct: 246  PEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTGSTSKC 305

Query: 969  QTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTGR 1148
               W+YLQIEVAQYINS  +GVP  MQA RPLSGFVQRLKGKQGRFR NLS KRVE+TGR
Sbjct: 306  LAGWDYLQIEVAQYINSDVRGVPLAMQAARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 365

Query: 1149 TVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAKFLAFPDG 1328
            TVISPDPNLKITEV +PILMA+ L++PERV+ HNIEKLRQC+ NG  KYPGAK + +PDG
Sbjct: 366  TVISPDPNLKITEVAIPILMAKILSYPERVSHHNIEKLRQCILNGPFKYPGAKLIRYPDG 425

Query: 1329 SKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRTLR 1508
            S  SLMF GRKR+ADELK GYIV+RHLEDGDVVLFNRQPSLHRMSIM HRA+IMPWRTLR
Sbjct: 426  SMRSLMFSGRKRFADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLR 485

Query: 1509 FNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFLT 1688
            FNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL LMGVQNNLCTPKNGEILVASTQDFLT
Sbjct: 486  FNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT 545

Query: 1689 SSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNAS 1868
            SSFLITRKDTFYDRAAFSLMCSYMGDGMD VDLPTP I K +ELWTGKQLF+VL+RP+A+
Sbjct: 546  SSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPAIIKAMELWTGKQLFNVLLRPHAN 605

Query: 1869 LRVYVNLTVTEKTFTKSWKREKTMCPNDGFVYFRNSELISGQLGKATLGNGDKN 2030
            +RVY+NLTV EKT+ K  + ++TMCP+DGFVYFRNSELISGQLGKATLGNG+K+
Sbjct: 606  VRVYLNLTVMEKTYNKR-RGKETMCPSDGFVYFRNSELISGQLGKATLGNGNKD 658


>ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao]
            gi|508773465|gb|EOY20721.1| DNA-directed RNA polymerase
            [Theobroma cacao]
          Length = 1395

 Score =  934 bits (2415), Expect = 0.0
 Identities = 472/661 (71%), Positives = 541/661 (81%), Gaps = 16/661 (2%)
 Frame = +3

Query: 96   FTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGLLDSRMGP 275
            FTK PYIED GPRK+ SI+FS+ S++EI K AEVQ+++A YYD   +PIE GLLD RMGP
Sbjct: 5    FTKRPYIEDVGPRKIKSIQFSMLSDSEIAKAAEVQVYQALYYDPKSRPIEGGLLDPRMGP 64

Query: 276  PNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRILLAEIPR 455
             NK+G CATCHG+F  CPGHYGYL L LPVYNVGYL+ I +ILKCICKSCSRI+L E   
Sbjct: 65   ANKSGKCATCHGNFADCPGHYGYLSLALPVYNVGYLSTILDILKCICKSCSRIILDEKLC 124

Query: 456  KDYLRRMRTQKI-AQKKTDMQKIIIKTCNTPGLKN---CSRCGYVNGIVKKATGMLGIIH 623
            KDYL+RMR+ KI A KK D+ K I+K C+         C RCGYVNG VKKA  MLGIIH
Sbjct: 125  KDYLKRMRSPKIDALKKGDIMKSIVKKCSAMASSKAVKCWRCGYVNGTVKKAVAMLGIIH 184

Query: 624  DRSKIADKSVEECRAAVSHIKEQSRGSVNMV-YMLTPAKVLSLFKKMLDEDCEVLYLADR 800
            DRSKI D S+EE R+A+SH KE S+ S N+  Y+L P KVLSLFK+M D DCE+LYL+DR
Sbjct: 185  DRSKINDNSLEEFRSAISHTKE-SKASFNVATYVLNPVKVLSLFKRMTDLDCELLYLSDR 243

Query: 801  PEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVRTMLDGTN---RSQ 971
            PEKLIIT+IAVPP  IRPSV++ G++SNENDITERLKRIIQANA +R  L  TN   +  
Sbjct: 244  PEKLIITNIAVPPIPIRPSVIMDGSQSNENDITERLKRIIQANASLRQELVETNAAFKCL 303

Query: 972  TDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTGRT 1151
              WE LQ+EVAQYINS  +GVP  MQ  +PLSGFVQR+KGK GRFR NLS KRVE+TGRT
Sbjct: 304  GGWEMLQVEVAQYINSDVRGVPFSMQVSKPLSGFVQRIKGKHGRFRGNLSGKRVEYTGRT 363

Query: 1152 VISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAKFLAFPDGS 1331
            VISPDPNLKITEV +PI MA+ LT+PERV++HNIEKLRQCVRNG +KYPGA+ + +PDGS
Sbjct: 364  VISPDPNLKITEVAIPIHMARILTYPERVSNHNIEKLRQCVRNGPSKYPGARMVRYPDGS 423

Query: 1332 KVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRTLRF 1511
               L+   RKR ADELK G +VDRHLEDGD+VLFNRQPSLHRMSIM HRA+IMPWRTLRF
Sbjct: 424  ARLLIGDYRKRLADELKFGCVVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRTLRF 483

Query: 1512 NESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFLTS 1691
            NESVCNPYNADFDGDEMNMHVPQTE+ARTEAL LMGVQNNLCTPKNGEILVASTQDFLTS
Sbjct: 484  NESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTS 543

Query: 1692 SFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNASL 1871
            SFLITRKD FYDRAAFSL+CSYMGDGMD +DLPTP + KPIELWTGKQLFSVL+RP+AS+
Sbjct: 544  SFLITRKDIFYDRAAFSLICSYMGDGMDLIDLPTPALLKPIELWTGKQLFSVLLRPHASV 603

Query: 1872 RVYVNLTVTEKTFTKSWKRE--------KTMCPNDGFVYFRNSELISGQLGKATLGNGDK 2027
            RVY+NL V E+ ++K   +         +TMCP+DGFVY RNSELI GQLGKATLGNG+K
Sbjct: 604  RVYLNLIVKERNYSKKIIKRIGNKEIEVETMCPDDGFVYIRNSELICGQLGKATLGNGNK 663

Query: 2028 N 2030
            +
Sbjct: 664  D 664


>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Citrus sinensis] gi|568870034|ref|XP_006488217.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            rpc1-like isoform X2 [Citrus sinensis]
          Length = 1404

 Score =  928 bits (2399), Expect = 0.0
 Identities = 468/673 (69%), Positives = 544/673 (80%), Gaps = 15/673 (2%)
 Frame = +3

Query: 57   MEQVNPETQQTTLFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKK 236
            M Q   +  Q+  FTK+PYIED GPRK+ SI+FS+ S++EI K AEVQ++K  YY  ++ 
Sbjct: 1    MTQQLQQKSQSIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRV 60

Query: 237  PIESGLLDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCIC 416
            PIE GLLD RMGP NK+  CATCHG F+ CPGHYGYL L LPVYNVGYL+ I +ILKCIC
Sbjct: 61   PIEGGLLDPRMGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLSTILDILKCIC 120

Query: 417  KSCSRILLAEIPRKDYLRRMRTQKI-AQKKTDMQKIIIKTCNTPGLK--NCSRCGYVNGI 587
            K CSR+LL E   KDYL++MR  K+ A +KTD+ K I+K C+T   K   C RCGY+NG+
Sbjct: 121  KYCSRLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGM 180

Query: 588  VKKATGMLGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMV-YMLTPAKVLSLFKKML 764
            VKKA  +LGIIHDRSK+ + S++E  +A++H KE S+ +VN+  Y+L P  VL LFK+M 
Sbjct: 181  VKKAVAVLGIIHDRSKVTE-SLQEFASAITHTKE-SKAAVNVATYILNPVNVLFLFKRMT 238

Query: 765  DEDCEVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVRT 944
            D DCEVLYL++RPEKLIIT+IAVPP  IRPSV++ G++SNENDITERLKRIIQ NA ++ 
Sbjct: 239  DTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQ 298

Query: 945  MLDGTN---RSQTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQN 1115
             L   N   +S   WE LQ+EVAQYINS  +GVP  MQ  RPLSGFVQRLKGKQGRFR N
Sbjct: 299  ELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGN 358

Query: 1116 LSAKRVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKY 1295
            LS KRVE+TGRTVISPDPNLKITEV +PI MA+ LT+PERV+ HNIEKLRQC++NG +KY
Sbjct: 359  LSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKY 418

Query: 1296 PGAKFLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSH 1475
            PGA+ + +PDG+   L    R + A ELK G IVDRHLEDGDVVLFNRQPSLHRMSIM H
Sbjct: 419  PGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 478

Query: 1476 RAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGE 1655
            RA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL LMGVQNNLCTPKNGE
Sbjct: 479  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 538

Query: 1656 ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQ 1835
            ILVASTQDFLTSSFLITRKDTFYDRAAFSLMC YMGDGMD VDLPTP I KP+ELWTGKQ
Sbjct: 539  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 598

Query: 1836 LFSVLVRPNASLRVYVNLTVTEKTFTKSWKRE--------KTMCPNDGFVYFRNSELISG 1991
            LFSVL+RP+A++RVYVNLTV EKT++    R         +TMCPNDGFVYFRNSELISG
Sbjct: 599  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 658

Query: 1992 QLGKATLGNGDKN 2030
            QLGKATLGNG+K+
Sbjct: 659  QLGKATLGNGNKD 671


>ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citrus clementina]
            gi|557526635|gb|ESR37941.1| hypothetical protein
            CICLE_v10027681mg [Citrus clementina]
          Length = 1397

 Score =  911 bits (2354), Expect = 0.0
 Identities = 465/683 (68%), Positives = 539/683 (78%), Gaps = 30/683 (4%)
 Frame = +3

Query: 57   MEQVNPETQQTTLFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKK 236
            M Q   +  Q+  FTK+PYIED GPRK+ SI+FS+ S++EI K AEVQ++K  YY  ++ 
Sbjct: 1    MTQQLQQKSQSIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRV 60

Query: 237  PIESGLLDSRM---------------GPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYN 371
            PIE GLLD RM               GP NK+  CATCHG F+ CPGHYGYL L LPVYN
Sbjct: 61   PIEGGLLDPRMEKIIFLQRLFFHGFQGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYN 120

Query: 372  VGYLNIIANILKCICKSCSRILLAEIPRKDYLRRMRTQKI-AQKKTDMQKIIIKTCNTPG 548
            VGYL+ I +ILKCICK CSR+LL E   KDYL++MR  K+ A +KTD+ K I+K C+T  
Sbjct: 121  VGYLSTILDILKCICKYCSRLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMA 180

Query: 549  LK--NCSRCGYVNGIVKKATGMLGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMV-Y 719
             K   C RCGY+NG+VKKA  +LGIIHDRSK+ + S++E  +A++H KE S+ +VN+  Y
Sbjct: 181  SKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE-SLQEFASAITHTKE-SKAAVNVATY 238

Query: 720  MLTPAKVLSLFKKMLDEDCEVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDIT 899
            +L P  VL LFK+M D DCEVLYL++RPEKLIIT+IAVPP  IRPSV++ G++SNENDIT
Sbjct: 239  ILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDIT 298

Query: 900  ERLKRIIQANARVRTMLDGTN---RSQTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSG 1070
            ERLKRIIQ NA ++  L   N   +S   WE LQ+EVAQYINS  +GVP  MQ  RPLSG
Sbjct: 299  ERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSG 358

Query: 1071 FVQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHN 1250
            FVQRLKGKQGRFR NLS KRVE+TGRTVISPDPNLKITEV +PI MA+ LT+PERV+ HN
Sbjct: 359  FVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHN 418

Query: 1251 IEKLRQCVRNGSNKYPGAKFLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVL 1430
            IEKLRQC++NG +KYPGA+ + +PDG+   L    R + A ELK G IVDRHLEDGDVVL
Sbjct: 419  IEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVL 478

Query: 1431 FNRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALT 1610
            FNRQPSLHRMSIM HRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL 
Sbjct: 479  FNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALL 538

Query: 1611 LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLP 1790
            LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMC YMGDGMD VDLP
Sbjct: 539  LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLP 598

Query: 1791 TPTIFKPIELWTGKQLFSVLVRPNASLRVYVNLTVTEKTFTKSWKRE--------KTMCP 1946
            TP I KP+ELWTGKQLFSVL+RP+A++RVYVNLTV EKT++    R         +TMCP
Sbjct: 599  TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 658

Query: 1947 NDGFVYFRNSELISGQLGKATLG 2015
            NDGFVYFRNSELISGQLGKATLG
Sbjct: 659  NDGFVYFRNSELISGQLGKATLG 681


>ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X2 [Solanum tuberosum]
          Length = 1243

 Score =  908 bits (2347), Expect = 0.0
 Identities = 455/658 (69%), Positives = 534/658 (81%), Gaps = 8/658 (1%)
 Frame = +3

Query: 81   QQTTLFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGLLD 260
            Q +   TK+PYIED GPRK+ SIKFSL SE+EI K AEV+++   YY+ +KKPI++GLLD
Sbjct: 5    QNSLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVYLGLYYESTKKPIQNGLLD 64

Query: 261  SRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRILL 440
             RMGPPNKNG C TCHG+F +CPGHYGYL L LPVYNVGYL  + +ILKCICK CS ILL
Sbjct: 65   PRMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCSSILL 124

Query: 441  AEIPRKDYLRRMRTQKIA-QKKTDMQKIIIKTCNTPG----LKNCSRCGYVNGIVKKATG 605
             +  R+D L++MR  +    KK+++ K ++K CN          CS+CGY+NG+VKK   
Sbjct: 125  DDKERRDILKKMRNPRTEFLKKSELHKKVVKRCNAMAGGQKTATCSKCGYMNGMVKKL-- 182

Query: 606  MLGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEVL 785
             L I H++    ++ ++E   A+S  K + R SV++   L P  V SLFK M DEDCE+L
Sbjct: 183  QLKITHEQG---NRILDEINVAISD-KRELRASVSVPPELDPKVVYSLFKNMSDEDCELL 238

Query: 786  YLADRPEKLIITSIAVPPTVIRPSVLV-GGTRSNENDITERLKRIIQANARVRTMLDGTN 962
            YL+DRPEKL++TSI VPP  IRPSV V GGT+SNENDITERLKRIIQANA +   +  ++
Sbjct: 239  YLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEMSDSS 298

Query: 963  --RSQTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVE 1136
              +S   W  LQ+EVAQYINS  +GVP HMQA RPLSGF QRLKGKQGRFR NLS KRVE
Sbjct: 299  PVKSLNLWIDLQMEVAQYINSDVRGVPLHMQAQRPLSGFTQRLKGKQGRFRGNLSGKRVE 358

Query: 1137 FTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAKFLA 1316
            +TGRTVISPDPNLKITEV +PILMAQ LT+PERV+ HNIEKLRQCVRNG NKYPGAKF+ 
Sbjct: 359  YTGRTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIR 418

Query: 1317 FPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPW 1496
             PDGS++SLMF  RKR+ADELK GYIVDRHLEDGD+VLFNRQPSLHRMSIMSHRA+IMPW
Sbjct: 419  HPDGSEISLMFTSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPW 478

Query: 1497 RTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQ 1676
            RTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL LMGVQNNLCTPK+GEILVASTQ
Sbjct: 479  RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQ 538

Query: 1677 DFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVR 1856
            DFLTSSFLITRKDTFY+RA+FSL+CSYMGD MD  DLP+P   KP+ELWTGKQLF +L+R
Sbjct: 539  DFLTSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQLFHMLLR 598

Query: 1857 PNASLRVYVNLTVTEKTFTKSWKREKTMCPNDGFVYFRNSELISGQLGKATLGNGDKN 2030
            P + +RVYVNLTVTEK+++    + +TMCP+DGFVYFRNSELISGQLGKATLGNG+K+
Sbjct: 599  PYSKMRVYVNLTVTEKSYS---GKGETMCPSDGFVYFRNSELISGQLGKATLGNGNKD 653


>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Solanum tuberosum]
          Length = 1394

 Score =  908 bits (2347), Expect = 0.0
 Identities = 455/658 (69%), Positives = 534/658 (81%), Gaps = 8/658 (1%)
 Frame = +3

Query: 81   QQTTLFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGLLD 260
            Q +   TK+PYIED GPRK+ SIKFSL SE+EI K AEV+++   YY+ +KKPI++GLLD
Sbjct: 5    QNSLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVYLGLYYESTKKPIQNGLLD 64

Query: 261  SRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRILL 440
             RMGPPNKNG C TCHG+F +CPGHYGYL L LPVYNVGYL  + +ILKCICK CS ILL
Sbjct: 65   PRMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCSSILL 124

Query: 441  AEIPRKDYLRRMRTQKIA-QKKTDMQKIIIKTCNTPG----LKNCSRCGYVNGIVKKATG 605
             +  R+D L++MR  +    KK+++ K ++K CN          CS+CGY+NG+VKK   
Sbjct: 125  DDKERRDILKKMRNPRTEFLKKSELHKKVVKRCNAMAGGQKTATCSKCGYMNGMVKKL-- 182

Query: 606  MLGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEVL 785
             L I H++    ++ ++E   A+S  K + R SV++   L P  V SLFK M DEDCE+L
Sbjct: 183  QLKITHEQG---NRILDEINVAISD-KRELRASVSVPPELDPKVVYSLFKNMSDEDCELL 238

Query: 786  YLADRPEKLIITSIAVPPTVIRPSVLV-GGTRSNENDITERLKRIIQANARVRTMLDGTN 962
            YL+DRPEKL++TSI VPP  IRPSV V GGT+SNENDITERLKRIIQANA +   +  ++
Sbjct: 239  YLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEMSDSS 298

Query: 963  --RSQTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVE 1136
              +S   W  LQ+EVAQYINS  +GVP HMQA RPLSGF QRLKGKQGRFR NLS KRVE
Sbjct: 299  PVKSLNLWIDLQMEVAQYINSDVRGVPLHMQAQRPLSGFTQRLKGKQGRFRGNLSGKRVE 358

Query: 1137 FTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAKFLA 1316
            +TGRTVISPDPNLKITEV +PILMAQ LT+PERV+ HNIEKLRQCVRNG NKYPGAKF+ 
Sbjct: 359  YTGRTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIR 418

Query: 1317 FPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPW 1496
             PDGS++SLMF  RKR+ADELK GYIVDRHLEDGD+VLFNRQPSLHRMSIMSHRA+IMPW
Sbjct: 419  HPDGSEISLMFTSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPW 478

Query: 1497 RTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQ 1676
            RTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL LMGVQNNLCTPK+GEILVASTQ
Sbjct: 479  RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQ 538

Query: 1677 DFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVR 1856
            DFLTSSFLITRKDTFY+RA+FSL+CSYMGD MD  DLP+P   KP+ELWTGKQLF +L+R
Sbjct: 539  DFLTSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQLFHMLLR 598

Query: 1857 PNASLRVYVNLTVTEKTFTKSWKREKTMCPNDGFVYFRNSELISGQLGKATLGNGDKN 2030
            P + +RVYVNLTVTEK+++    + +TMCP+DGFVYFRNSELISGQLGKATLGNG+K+
Sbjct: 599  PYSKMRVYVNLTVTEKSYS---GKGETMCPSDGFVYFRNSELISGQLGKATLGNGNKD 653


>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Solanum
            lycopersicum]
          Length = 1390

 Score =  901 bits (2329), Expect = 0.0
 Identities = 451/658 (68%), Positives = 533/658 (81%), Gaps = 8/658 (1%)
 Frame = +3

Query: 81   QQTTLFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGLLD 260
            Q++   TK+PYIED GPRK+ SIKFSL SE+EI K AEV+++   YY+ +KKPI++GLLD
Sbjct: 5    QESLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKLAEVEVYLGLYYESTKKPIQNGLLD 64

Query: 261  SRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRILL 440
             RMGPPNK+G C TCHG+F +CPGHYGYL L LPVYNVGYL  + +ILKCICK CS ILL
Sbjct: 65   PRMGPPNKSGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCSSILL 124

Query: 441  AEIPRKDYLRRMRTQKIA-QKKTDMQKIIIKTCNTPG----LKNCSRCGYVNGIVKKATG 605
             +  R+D L++MR  +    KK+++ K ++K CN          CS+CGY+NG+VKK   
Sbjct: 125  DDKERRDILKKMRNPRTEFLKKSELHKRVVKRCNAMAGGQKTATCSKCGYMNGMVKKL-- 182

Query: 606  MLGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEVL 785
             L I H++    ++ ++E   A+S  K + R SV++   + P  V SLFK M DEDCE+L
Sbjct: 183  QLKITHEQG---NRILDEINVAISD-KRELRASVSVPPEIDPKVVYSLFKNMSDEDCELL 238

Query: 786  YLADRPEKLIITSIAVPPTVIRPSVLV-GGTRSNENDITERLKRIIQANARVRTMLDGTN 962
            YL+DRPEKL++TSI VPP  IRPSV V GGT+SNENDITERLKRIIQANA +   +  ++
Sbjct: 239  YLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEMSDSS 298

Query: 963  --RSQTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVE 1136
              +S   W  LQ+EVAQYINS  +GVP  MQ PRPLSGF QRLKGKQGRFR NLS KRVE
Sbjct: 299  PVKSLNQWIDLQMEVAQYINSDVRGVPLQMQPPRPLSGFTQRLKGKQGRFRGNLSGKRVE 358

Query: 1137 FTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAKFLA 1316
            +TGRTVISPDPNLKITEV +PILMAQ LT+PERV+ HNIEKLRQCVRNG NKYPGAKF+ 
Sbjct: 359  YTGRTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIR 418

Query: 1317 FPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPW 1496
             PDG+++SLMF  RKRYADELK GYIVDRHLEDGD+VLFNRQPSLHRMSIMSHRA+IMPW
Sbjct: 419  HPDGNEMSLMFSSRKRYADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPW 478

Query: 1497 RTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQ 1676
            RTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL LMGVQNNLCTPK+GEILVASTQ
Sbjct: 479  RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQ 538

Query: 1677 DFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVR 1856
            DFLTSSFLITRKDTFY+RA+FSL+CSYMGD MD  DLP+P   KP+ELWTGKQLF VL+R
Sbjct: 539  DFLTSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQLFHVLLR 598

Query: 1857 PNASLRVYVNLTVTEKTFTKSWKREKTMCPNDGFVYFRNSELISGQLGKATLGNGDKN 2030
            P + +RVYVNLT+TEK+++    + +TMC +DGFVYFRNSELISGQLGKATLGNG+K+
Sbjct: 599  PYSKMRVYVNLTLTEKSYS---GKGETMCSSDGFVYFRNSELISGQLGKATLGNGNKD 653


>ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arabidopsis lyrata subsp.
            lyrata] gi|297310500|gb|EFH40924.1| hypothetical protein
            ARALYDRAFT_496142 [Arabidopsis lyrata subsp. lyrata]
          Length = 1376

 Score =  892 bits (2306), Expect = 0.0
 Identities = 449/662 (67%), Positives = 524/662 (79%), Gaps = 10/662 (1%)
 Frame = +3

Query: 75   ETQQTTLFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGL 254
            ET+    FTK+PYIED GP K+ SI FS+ S+ E+ K AEVQ+WK  YY+ + KP E+GL
Sbjct: 2    ETKMEIEFTKQPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWKNNYYETNLKPYENGL 61

Query: 255  LDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRI 434
            LD+RMGPPNK  IC TC G+F  CPGHYGYL L+LPVYNVG+ N I +ILKCICK CS +
Sbjct: 62   LDARMGPPNKKSICTTCDGNFQNCPGHYGYLKLDLPVYNVGFFNFILDILKCICKRCSNM 121

Query: 435  LLAEIPRKDYLRRMRTQKIAQ-KKTDMQKIIIKTCNTPGLKN---CSRCGYVNGIVKKAT 602
            LL E   +D+LR+MR  K+   KKT++ K ++K C+T   +    C +CGY+NG+VKK  
Sbjct: 122  LLDEKLYEDHLRKMRNPKMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIA 181

Query: 603  GMLGI--IHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDC 776
              +GI   HDRSKI    V+EC++A+SH KE +R    + Y+L P  VL LFK M D+DC
Sbjct: 182  AQMGIGISHDRSKIHGGEVDECKSAISHTKESTRAINPLTYVLDPNLVLGLFKGMSDKDC 241

Query: 777  EVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVRTMLDG 956
            E+LY+A RPE LI T + VPP  IRPSV++GGTRSNENDITERLK IIQ NA +  +L  
Sbjct: 242  ELLYIAHRPENLITTCMLVPPLSIRPSVMIGGTRSNENDITERLKLIIQNNACLHRILSQ 301

Query: 957  TNRSQTD---WEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAK 1127
               S  +   W+ +Q EVA+YINS  +GV  +     PLSG +QRLKGKQGRFR NLS K
Sbjct: 302  PTTSPKNMQVWDTVQSEVAKYINSEVRGVQ-NQPEKTPLSGLLQRLKGKQGRFRANLSGK 360

Query: 1128 RVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAK 1307
            RVE+TGRTVISPDPNLKITEVG+PILMA+ LTFPE V+ HNIEKLRQCVRNG NKYPGA+
Sbjct: 361  RVEYTGRTVISPDPNLKITEVGIPILMARILTFPECVSRHNIEKLRQCVRNGPNKYPGAR 420

Query: 1308 FLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKI 1487
             + +PDGS  +L+   RKR ADEL IG IVDRHLE+GD VLFNRQPSLHRMSIM HRA+I
Sbjct: 421  NVRYPDGSSRTLVGDYRKRIADELTIGCIVDRHLEEGDAVLFNRQPSLHRMSIMCHRARI 480

Query: 1488 MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVA 1667
            MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+TLMGVQNNLCTPKNGEILVA
Sbjct: 481  MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVA 540

Query: 1668 STQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSV 1847
            STQDFLT+SFLITRKDTFYDRAAFSL+CSYMGDGMD +DLPTPTI KPIELWTGKQLFSV
Sbjct: 541  STQDFLTTSFLITRKDTFYDRAAFSLICSYMGDGMDAIDLPTPTILKPIELWTGKQLFSV 600

Query: 1848 LVRPNASLRVYVNLTVTEKTFTKSWKR-EKTMCPNDGFVYFRNSELISGQLGKATLGNGD 2024
            L+RPNAS+RVYV L V EK F K     ++TMC NDG+VYFRNSELISGQLGKATLGNG+
Sbjct: 601  LLRPNASVRVYVTLNVKEKNFKKGEHGFDETMCVNDGWVYFRNSELISGQLGKATLGNGN 660

Query: 2025 KN 2030
            K+
Sbjct: 661  KD 662


>ref|XP_006400888.1| hypothetical protein EUTSA_v10012446mg [Eutrema salsugineum]
            gi|557101978|gb|ESQ42341.1| hypothetical protein
            EUTSA_v10012446mg [Eutrema salsugineum]
          Length = 1375

 Score =  888 bits (2294), Expect = 0.0
 Identities = 444/663 (66%), Positives = 529/663 (79%), Gaps = 11/663 (1%)
 Frame = +3

Query: 75   ETQQTTLFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGL 254
            ET+    FTK+PYIED GP K+ SI FS+ S+ EI K AEVQ+W+  YY+ + KP+E GL
Sbjct: 2    ETKMEIEFTKQPYIEDVGPLKIKSINFSIFSDLEIMKAAEVQVWRNNYYESNFKPVEGGL 61

Query: 255  LDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRI 434
            LD RMGPPNK  ICATCH DF  CPGH+GYL L+LPVYNVG+LN I +ILKCICK CS I
Sbjct: 62   LDPRMGPPNKKSICATCHADFQNCPGHFGYLKLDLPVYNVGFLNYILDILKCICKRCSNI 121

Query: 435  LLAEIPRKDYLRRMRTQKIAQ-KKTDMQKIIIKTCN---TPGLKNCSRCGYVNGIVKKAT 602
            L+ E   +D+L++MR  K+   KKT++ K ++K C+   +  +  C  CGY+NG+VKK  
Sbjct: 122  LIDEKLYEDHLKKMRNPKMEPLKKTELAKAVVKKCSMMASQRIITCKNCGYLNGMVKKVA 181

Query: 603  ---GMLGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVN-MVYMLTPAKVLSLFKKMLDE 770
               G++GI HDRSKI    V+E ++A+SH +E S G++N + Y+L P  VL LFK M D+
Sbjct: 182  AQMGIIGISHDRSKIHGGEVDEFKSAISHTRE-STGAINPLTYVLDPNLVLGLFKGMSDK 240

Query: 771  DCEVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVRTML 950
            DCE+LY+A RPE L I  + VPP   RPSV +GGT+SNEND+TER+K+I+Q NA  + +L
Sbjct: 241  DCELLYIAHRPENLFIICMFVPPLPTRPSVRIGGTQSNENDLTERVKKILQDNASCKKIL 300

Query: 951  DGTNRSQTD---WEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLS 1121
            +    S  +   W+ +Q EVAQYINS  +G+P    + +PLSG +QRLKGKQGRFR NLS
Sbjct: 301  NQATTSPKNMQVWDTVQSEVAQYINSEVRGIPNQPDS-KPLSGILQRLKGKQGRFRANLS 359

Query: 1122 AKRVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPG 1301
             KRVE+TGRTVISPDPNLKITEVG+PILMA+ LTFPE V+ HNIEKLRQCVRNG NKYPG
Sbjct: 360  GKRVEYTGRTVISPDPNLKITEVGIPILMARILTFPECVSRHNIEKLRQCVRNGPNKYPG 419

Query: 1302 AKFLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRA 1481
            A+ + +PDGS  +L+   RKR ADEL IG IVDRHLE+GD VLFNRQPSLHRMSIM HRA
Sbjct: 420  ARSVRYPDGSSRTLVGDYRKRIADELTIGCIVDRHLEEGDAVLFNRQPSLHRMSIMCHRA 479

Query: 1482 KIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEIL 1661
            +IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+TLMGVQNNLCTPKNGEIL
Sbjct: 480  RIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEIL 539

Query: 1662 VASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLF 1841
            VASTQDFLTSS+LITRKDTFYDRAAFSL+CSYMGD MD +DLPTPTI KPIELWTGKQ+F
Sbjct: 540  VASTQDFLTSSYLITRKDTFYDRAAFSLICSYMGDAMDAIDLPTPTILKPIELWTGKQVF 599

Query: 1842 SVLVRPNASLRVYVNLTVTEKTFTKSWKREKTMCPNDGFVYFRNSELISGQLGKATLGNG 2021
            SVL+RPNAS+RVYV L V EK F K  K ++TMC NDG+VYFRNSELISGQLGKATLGNG
Sbjct: 600  SVLLRPNASVRVYVTLNVKEKNFKKG-KYDETMCTNDGWVYFRNSELISGQLGKATLGNG 658

Query: 2022 DKN 2030
            +K+
Sbjct: 659  NKD 661


>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
            sativus]
          Length = 1400

 Score =  888 bits (2294), Expect = 0.0
 Identities = 453/658 (68%), Positives = 522/658 (79%), Gaps = 12/658 (1%)
 Frame = +3

Query: 93   LFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGLLDSRMG 272
            +FTK+PYIED GPRK+ S++F+  S AEI K AEVQ++K  YYD ++KPI+ GLLD RMG
Sbjct: 10   VFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDGGLLDPRMG 69

Query: 273  PPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRILLAEIP 452
            P NK   CATCH +F  CPGHYGY+ L LPV+NVGY   I  ILKCICKSCSRILL E  
Sbjct: 70   PANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEKL 129

Query: 453  RKDYLRRMRTQKI-AQKKTDMQKIIIKTCNTPGLKN----CSRCGYVNGIVKKATGMLGI 617
             KD+LR+MR  K+ A +K D+ K IIK C+T    N    CSRCGY+NG VKKA  MLGI
Sbjct: 130  FKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGSVKKAVSMLGI 189

Query: 618  IHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVY-MLTPAKVLSLFKKMLDEDCEVLYLA 794
            +H R++  D  V         + E  R   N+   +L P +VL LF++M DEDCE+L+L+
Sbjct: 190  LHYRARSKDAGV---------VSEDLRAPYNVSNDILNPFRVLCLFQRMSDEDCELLFLS 240

Query: 795  DRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVRTMLDGTN---R 965
            +RPEKLIIT++ VPP  IRPSV++ G++SNENDITERLKRIIQ NA V   L  +N   +
Sbjct: 241  NRPEKLIITNVLVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQAK 300

Query: 966  SQTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTG 1145
                W+ LQ EVAQ INS  +G+P  MQ  +PL+GFVQRLKGKQGRFR NL  KRVEFTG
Sbjct: 301  CLESWDMLQSEVAQLINSDVRGIPFSMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTG 360

Query: 1146 RTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAKFLAFPD 1325
            RTVISPDPNLKITEV VPI MA+ LT+PERVT HNIEKLRQCV NG +KYPGA+ L   D
Sbjct: 361  RTVISPDPNLKITEVAVPIHMARILTYPERVTRHNIEKLRQCVSNGPDKYPGARMLRHLD 420

Query: 1326 GSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRTL 1505
            GS  SLM  GRKR ADELK G IV+RHLEDGDVVLFNRQPSLHRMSIM HR ++MPWRTL
Sbjct: 421  GSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL 480

Query: 1506 RFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFL 1685
            RFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+ LMGVQNNLCTPKNGEILVASTQDFL
Sbjct: 481  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFL 540

Query: 1686 TSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNA 1865
            TSSFLITRKDTFYDRAAFSLMCSYMGDGMD VDLPTP + KPIELWTGKQLFSVLVRP+A
Sbjct: 541  TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALVKPIELWTGKQLFSVLVRPHA 600

Query: 1866 SLRVYVNLTVTEKTFTK---SWKREKTMCPNDGFVYFRNSELISGQLGKATLGNGDKN 2030
            S++VY+NLTV EK+++K   + K  +TMCPNDGFVYFRNSELISGQ+GKATLGNG+K+
Sbjct: 601  SMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKD 658


>ref|XP_006279465.1| hypothetical protein CARUB_v10025743mg [Capsella rubella]
            gi|482548169|gb|EOA12363.1| hypothetical protein
            CARUB_v10025743mg [Capsella rubella]
          Length = 1376

 Score =  885 bits (2287), Expect = 0.0
 Identities = 443/662 (66%), Positives = 525/662 (79%), Gaps = 10/662 (1%)
 Frame = +3

Query: 75   ETQQTTLFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGL 254
            ET+    +TK+PYIED G  K+ SI FS+ S+ E+ K AEVQ+WK +YYD + KP E GL
Sbjct: 2    ETKMEIEYTKKPYIEDVGSLKIKSINFSMLSDLEVMKAAEVQVWKNSYYDPNCKPFEGGL 61

Query: 255  LDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRI 434
            LD RMGPPNK  IC TC G+F  CPGHYGYL L+LPVYN+GY N I +ILKCICK CS +
Sbjct: 62   LDPRMGPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNIGYFNFILDILKCICKCCSNM 121

Query: 435  LLAEIPRKDYLRRMRTQKIAQ-KKTDMQKIIIKTCNTPGLKN---CSRCGYVNGIVKKAT 602
            LL E   +D+LR+MR  K+   KKT++ K ++K C+T   +    C +CGY+NG+VKK  
Sbjct: 122  LLDEKLYEDHLRKMRNPKMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIP 181

Query: 603  GMLGI--IHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDC 776
              +GI   HDRSKI    V+E +AA+SHIKE ++    + Y+L P  VL LFK M D+DC
Sbjct: 182  AQMGIGISHDRSKIHGGEVDEFKAAISHIKESTQAINPLTYVLDPNVVLGLFKGMSDKDC 241

Query: 777  EVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVRTMLDG 956
            E+LY+A RPE LIIT + VPP  IRPSV+VGG++SNEND++ RLK+IIQ NA +  +L  
Sbjct: 242  ELLYIAHRPENLIITCMLVPPLSIRPSVMVGGSQSNENDLSARLKQIIQDNASLHRILSQ 301

Query: 957  TNRSQTD---WEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAK 1127
               S  +   W+ +Q EVA+YINS  +GV     + +P+SG +QRLKGKQGRFR NLS K
Sbjct: 302  PTTSAKNMQVWDTVQSEVAKYINSEVRGVQNQPDS-KPMSGILQRLKGKQGRFRANLSGK 360

Query: 1128 RVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAK 1307
            RVE+TGRTVISPDPNLKITEVG+PILMA+ LTFPE V+ HNIEKLRQCVRNG NKYPGA+
Sbjct: 361  RVEYTGRTVISPDPNLKITEVGIPILMARILTFPECVSRHNIEKLRQCVRNGPNKYPGAR 420

Query: 1308 FLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKI 1487
             + +PDGS  +L+   RKR ADEL IG IVDRHLE+GD VLFNRQPSLHRMSIM HRA+I
Sbjct: 421  NVRYPDGSSRALVGDYRKRIADELAIGCIVDRHLEEGDAVLFNRQPSLHRMSIMCHRARI 480

Query: 1488 MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVA 1667
            MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+TLMGVQNNLCTPKNGEILVA
Sbjct: 481  MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVA 540

Query: 1668 STQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSV 1847
            STQDFLTSSFLITRKDTFYDRAAFSL+CSYMGDGMD +DLPTPT+ KPIELWTGKQ+FSV
Sbjct: 541  STQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDAIDLPTPTVLKPIELWTGKQIFSV 600

Query: 1848 LVRPNASLRVYVNLTVTEKTFTK-SWKREKTMCPNDGFVYFRNSELISGQLGKATLGNGD 2024
            L+RPNAS+RVYV L V EK F K +   ++TMC NDG+VYFRNSELISGQLGKATLGNG+
Sbjct: 601  LLRPNASVRVYVTLNVKEKNFKKGNHGFDETMCTNDGWVYFRNSELISGQLGKATLGNGN 660

Query: 2025 KN 2030
            K+
Sbjct: 661  KD 662


>dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Arabidopsis thaliana]
          Length = 1383

 Score =  885 bits (2286), Expect = 0.0
 Identities = 443/662 (66%), Positives = 520/662 (78%), Gaps = 10/662 (1%)
 Frame = +3

Query: 75   ETQQTTLFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGL 254
            ET+    FTK+PYIED GP K+ SI FS+ S+ E+ K AEVQ+W    YD S KP E+GL
Sbjct: 2    ETKMEIEFTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGL 61

Query: 255  LDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRI 434
            LD RMGPPNK  IC TC G+F  CPGHYGYL L+LPVYNVGY N I +ILKCICK CS +
Sbjct: 62   LDPRMGPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNM 121

Query: 435  LLAEIPRKDYLRRMRTQKIAQ-KKTDMQKIIIKTCNTPGLKN---CSRCGYVNGIVKKAT 602
            LL E   +D+LR+MR  ++   KKT++ K ++K C+T   +    C +CGY+NG+VKK  
Sbjct: 122  LLDEKLYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIA 181

Query: 603  GM--LGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDC 776
                +GI HDRSKI    ++EC++A+SH K+ +     + Y+L P  VL LFK+M D+DC
Sbjct: 182  AQFGIGISHDRSKIHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVLGLFKRMSDKDC 241

Query: 777  EVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVRTMLDG 956
            E+LY+A RPE LIIT + VPP  IRPSV++GG +SNEND+T RLK+II  NA +  +L  
Sbjct: 242  ELLYIAYRPENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQ 301

Query: 957  TNRSQTD---WEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAK 1127
               S  +   W+ +QIEVA+YINS  +G   +     PLSG +QRLKGK GRFR NLS K
Sbjct: 302  PTSSPKNMQVWDTVQIEVARYINSEVRGCQ-NQPEEHPLSGILQRLKGKGGRFRANLSGK 360

Query: 1128 RVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAK 1307
            RVEFTGRTVISPDPNLKITEVG+PILMAQ LTFPE V+ HNIEKLRQCVRNG NKYPGA+
Sbjct: 361  RVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGAR 420

Query: 1308 FLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKI 1487
             + +PDGS  +L+   RKR ADEL IG IVDRHL++GDVVLFNRQPSLHRMSIM HRA+I
Sbjct: 421  NVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARI 480

Query: 1488 MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVA 1667
            MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+TLMGVQNNLCTPKNGEILVA
Sbjct: 481  MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVA 540

Query: 1668 STQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSV 1847
            STQDFLTSSFLITRKDTFYDRAAFSL+CSYMGDGMD +DLPTPTI KPIELWTGKQ+FSV
Sbjct: 541  STQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWTGKQIFSV 600

Query: 1848 LVRPNASLRVYVNLTVTEKTFTKSWKR-EKTMCPNDGFVYFRNSELISGQLGKATLGNGD 2024
            L+RPNAS+RVYV L V EK F K     ++TMC NDG+VYFRNSELISGQLGKATLGNG+
Sbjct: 601  LLRPNASIRVYVTLNVKEKNFKKGEHGFDETMCINDGWVYFRNSELISGQLGKATLGNGN 660

Query: 2025 KN 2030
            K+
Sbjct: 661  KD 662


>ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana]
            gi|332009886|gb|AED97269.1| nuclear RNA polymerase C1
            [Arabidopsis thaliana]
          Length = 1376

 Score =  885 bits (2286), Expect = 0.0
 Identities = 443/662 (66%), Positives = 520/662 (78%), Gaps = 10/662 (1%)
 Frame = +3

Query: 75   ETQQTTLFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGL 254
            ET+    FTK+PYIED GP K+ SI FS+ S+ E+ K AEVQ+W    YD S KP E+GL
Sbjct: 2    ETKMEIEFTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGL 61

Query: 255  LDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRI 434
            LD RMGPPNK  IC TC G+F  CPGHYGYL L+LPVYNVGY N I +ILKCICK CS +
Sbjct: 62   LDPRMGPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNM 121

Query: 435  LLAEIPRKDYLRRMRTQKIAQ-KKTDMQKIIIKTCNTPGLKN---CSRCGYVNGIVKKAT 602
            LL E   +D+LR+MR  ++   KKT++ K ++K C+T   +    C +CGY+NG+VKK  
Sbjct: 122  LLDEKLYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIA 181

Query: 603  GM--LGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDC 776
                +GI HDRSKI    ++EC++A+SH K+ +     + Y+L P  VL LFK+M D+DC
Sbjct: 182  AQFGIGISHDRSKIHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVLGLFKRMSDKDC 241

Query: 777  EVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVRTMLDG 956
            E+LY+A RPE LIIT + VPP  IRPSV++GG +SNEND+T RLK+II  NA +  +L  
Sbjct: 242  ELLYIAYRPENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQ 301

Query: 957  TNRSQTD---WEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAK 1127
               S  +   W+ +QIEVA+YINS  +G   +     PLSG +QRLKGK GRFR NLS K
Sbjct: 302  PTSSPKNMQVWDTVQIEVARYINSEVRGCQ-NQPEEHPLSGILQRLKGKGGRFRANLSGK 360

Query: 1128 RVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAK 1307
            RVEFTGRTVISPDPNLKITEVG+PILMAQ LTFPE V+ HNIEKLRQCVRNG NKYPGA+
Sbjct: 361  RVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGAR 420

Query: 1308 FLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKI 1487
             + +PDGS  +L+   RKR ADEL IG IVDRHL++GDVVLFNRQPSLHRMSIM HRA+I
Sbjct: 421  NVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARI 480

Query: 1488 MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVA 1667
            MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+TLMGVQNNLCTPKNGEILVA
Sbjct: 481  MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVA 540

Query: 1668 STQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSV 1847
            STQDFLTSSFLITRKDTFYDRAAFSL+CSYMGDGMD +DLPTPTI KPIELWTGKQ+FSV
Sbjct: 541  STQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWTGKQIFSV 600

Query: 1848 LVRPNASLRVYVNLTVTEKTFTKSWKR-EKTMCPNDGFVYFRNSELISGQLGKATLGNGD 2024
            L+RPNAS+RVYV L V EK F K     ++TMC NDG+VYFRNSELISGQLGKATLGNG+
Sbjct: 601  LLRPNASIRVYVTLNVKEKNFKKGEHGFDETMCINDGWVYFRNSELISGQLGKATLGNGN 660

Query: 2025 KN 2030
            K+
Sbjct: 661  KD 662


>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1394

 Score =  884 bits (2283), Expect = 0.0
 Identities = 446/661 (67%), Positives = 523/661 (79%), Gaps = 12/661 (1%)
 Frame = +3

Query: 84   QTTLFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGLLDS 263
            Q  ++TK+PYIED GPR++ SI+FS  S ++I K +E Q+    YYD +KK I  GLLD+
Sbjct: 6    QDIIYTKQPYIEDVGPRRIKSIQFSTMSGSDILKASECQVHLGQYYDANKKAIVGGLLDT 65

Query: 264  RMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRILLA 443
            RMG PNK+G C TC G FT CPGH+GYL L LPVYNVGYL+ I +ILKCICKSCSR+L+ 
Sbjct: 66   RMGAPNKHGTCQTCGGSFTDCPGHFGYLNLVLPVYNVGYLSTILDILKCICKSCSRVLVD 125

Query: 444  EIPRKDYLRRMRTQKIAQ-KKTDMQKIIIKTCNTPGLKN---CSRCGYVNGIVKKATGML 611
            E  RK YL+RMR  +    KK ++ K I+K C++        C RCGY+NG+VKKA  ++
Sbjct: 126  EKLRKSYLKRMRNPRTEPLKKNELMKEIVKKCSSMASSKAVKCLRCGYMNGMVKKAGSVV 185

Query: 612  GIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEVLYL 791
            GIIHDRSK+ D  +EEC++A+ H +E         Y+L P +VLSLF++M++EDCE+LYL
Sbjct: 186  GIIHDRSKLIDGYLEECKSAIGHTREARAPIGLATYILNPVRVLSLFQRMVEEDCELLYL 245

Query: 792  ADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVRT-MLDGTN-- 962
              RPEKLIIT+IAVPP  IRPSV   G++SNENDITERLK+IIQ NA++R  +L+G    
Sbjct: 246  QGRPEKLIITTIAVPPISIRPSVFTEGSQSNENDITERLKQIIQFNAKLRLELLEGRRTG 305

Query: 963  -RSQTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEF 1139
             +    W+ LQ  V  YINS  + +P  MQ  RPLSGFVQRL GKQGRFRQNL+ KRVEF
Sbjct: 306  IKYLIGWDELQAVVTLYINSDVR-IPLDMQVGRPLSGFVQRLTGKQGRFRQNLAGKRVEF 364

Query: 1140 TGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAKFLAF 1319
            TGRTVISPDPNLKITEV +PI MA+ LT+PERVT HNIEKLRQCV NGS KYPGA+ + +
Sbjct: 365  TGRTVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCVNNGSYKYPGARMVTY 424

Query: 1320 PDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWR 1499
            PDGS   L    RKR A+ELK G IV RHLEDGDVVLFNRQPSLHRMSIM HRA+IMPWR
Sbjct: 425  PDGSSKMLTGNYRKRIAEELKSGCIVHRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWR 484

Query: 1500 TLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQD 1679
            TLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA  LMGVQNNLCTPKNGEILVASTQD
Sbjct: 485  TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAFLLMGVQNNLCTPKNGEILVASTQD 544

Query: 1680 FLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRP 1859
            FLTSSFLITRKDTFYDRAAFSLMCSYM DGMD VDLPTP++ KPIELWTGKQLFSVL+RP
Sbjct: 545  FLTSSFLITRKDTFYDRAAFSLMCSYMNDGMDLVDLPTPSVLKPIELWTGKQLFSVLLRP 604

Query: 1860 NASLRVYVNLTVTEKTFTKSWKREK----TMCPNDGFVYFRNSELISGQLGKATLGNGDK 2027
            +A++RVYVNL + EK +++  K  K    TMCPNDG+VYFRNSELISGQLGKATLGNG+K
Sbjct: 605  HANVRVYVNLILKEKNYSRPNKEHKKERETMCPNDGYVYFRNSELISGQLGKATLGNGNK 664

Query: 2028 N 2030
            +
Sbjct: 665  D 665


>ref|XP_004505923.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Cicer arietinum]
          Length = 1399

 Score =  874 bits (2259), Expect = 0.0
 Identities = 441/660 (66%), Positives = 515/660 (78%), Gaps = 5/660 (0%)
 Frame = +3

Query: 66   VNPETQQTTLFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIE 245
            +N    +  +FTKEP+IED GPRK+  I +S  SEAEI K  EVQ+WK  YYD  +KP  
Sbjct: 1    MNRSRTEGLVFTKEPFIEDLGPRKIAGITYSTLSEAEISKIGEVQVWKGTYYDAFRKPEA 60

Query: 246  SGLLDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSC 425
             GLLDSRMGP NK+ +CATCHG+F  C GHYGYLPL  PV+NVGYLN +  ILKCICK C
Sbjct: 61   DGLLDSRMGPANKSLVCATCHGNFADCQGHYGYLPLVQPVFNVGYLNTMVKILKCICKGC 120

Query: 426  SRILLAEIPRKDYLRRMRTQKIAQ-KKTDMQKIIIKTCNTPGLKNCSRCGYVNGIVKKAT 602
            + ILL E  RK YL++MR  K+ + +K  + + I+K   +     C RCGY+NGIVK   
Sbjct: 121  AGILLDEDTRKKYLKKMRNSKLDELQKIQLLESIMKRFRSAKFIKCQRCGYINGIVKLTR 180

Query: 603  GMLGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEV 782
              L I+HD S   +  V E ++A+SH+KE    +      L P  V SLF KM DEDC +
Sbjct: 181  STLRIVHDCSHGKNDVVSELQSALSHMKEYRATNDLASRNLDPKSVHSLFTKMSDEDCAL 240

Query: 783  LYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVRTMLDGTN 962
            LYLA+RPEKLIIT+IAVPP VIRPSV++ G++SNENDITE+L++IIQANA +   L+ + 
Sbjct: 241  LYLAERPEKLIITNIAVPPIVIRPSVIMDGSQSNENDITEKLRKIIQANAALHKELEEST 300

Query: 963  RSQTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFT 1142
            + Q  +E LQ  VAQYINS  KG P  MQA +PL+GFVQR+KGKQGRFR NLS KRVE+T
Sbjct: 301  KFQGGFEMLQFLVAQYINSDVKGGPYSMQASKPLTGFVQRIKGKQGRFRSNLSGKRVEYT 360

Query: 1143 GRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAKFLAFP 1322
            GRTVISPDPNLKITEV +PI MA+ LT+PERVT HNIEKLRQC+RNG +KYPGAK L   
Sbjct: 361  GRTVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCLRNGPDKYPGAKLLRHA 420

Query: 1323 DGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRT 1502
             G+  +L    RKR ADEL+ G IVDRHLEDGDVVLFNRQPSLHRMS+M HRA+IMPWRT
Sbjct: 421  GGTTWNLKVSCRKRLADELRFGDIVDRHLEDGDVVLFNRQPSLHRMSMMCHRARIMPWRT 480

Query: 1503 LRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDF 1682
            LRFNESVCNPYNADFDGDEMN+HVPQTE+ARTEAL LM VQNNLCTPKNGEILVASTQDF
Sbjct: 481  LRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALLLMTVQNNLCTPKNGEILVASTQDF 540

Query: 1683 LTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPN 1862
            LTSSFLITRKDTFYDR+ FSL+CSYMGDGMD +DLPTP I KP+ELW+GKQLFS+L+RP+
Sbjct: 541  LTSSFLITRKDTFYDRSTFSLICSYMGDGMDPIDLPTPAIIKPVELWSGKQLFSILLRPH 600

Query: 1863 ASLRVYVNLTVTEKTFTKSW---KRE-KTMCPNDGFVYFRNSELISGQLGKATLGNGDKN 2030
            A++RVYVNLTV EKT        KRE KTMCPNDGFVYFRNSELISGQLGK TLGNG+K+
Sbjct: 601  ANVRVYVNLTVKEKTHNAKLDDRKREMKTMCPNDGFVYFRNSELISGQLGKVTLGNGNKD 660


>ref|XP_007132141.1| hypothetical protein PHAVU_011G070100g [Phaseolus vulgaris]
            gi|561005141|gb|ESW04135.1| hypothetical protein
            PHAVU_011G070100g [Phaseolus vulgaris]
          Length = 1392

 Score =  874 bits (2258), Expect = 0.0
 Identities = 441/653 (67%), Positives = 525/653 (80%), Gaps = 8/653 (1%)
 Frame = +3

Query: 96   FTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGLLDSRMGP 275
            FTKEP++EDAGPRK+ ++KFS+ S++EI K  EVQ+WK +YYD  KKPI  GLLD RMGP
Sbjct: 11   FTKEPFMEDAGPRKIKNMKFSMLSDSEISKLGEVQVWKGSYYDSFKKPIHGGLLDPRMGP 70

Query: 276  PNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRILLAEIPR 455
             NK+  CATCHG+F  CPGHYGYL L LPV+NVGYL  I  ILKCICK C+RILL E  R
Sbjct: 71   ANKSLGCATCHGNFHDCPGHYGYLNLALPVFNVGYLGSIVEILKCICKGCARILLDEDTR 130

Query: 456  KDYLRRMRTQKIAQ-KKTDMQKI-IIKTCNTPGLKNCSRCGYVNGIVKKATGMLGIIHDR 629
            K +L++MR+ K ++  K D  K+ IIK C+   + NC RCGY+NG VKK    L I+HD 
Sbjct: 131  KKHLKKMRSSKKSELDKMDFVKVRIIKDCSK--VVNCPRCGYINGSVKKLPASLIIMHDC 188

Query: 630  SKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEVLYLADRPEK 809
            SK  +  VEE  + +S IK+    +     +L P +VLSLF+KMLDEDCE+LY+A+RPEK
Sbjct: 189  SKCKNNIVEELESTLSRIKDSKATANVSNRILNPFQVLSLFRKMLDEDCELLYVAERPEK 248

Query: 810  LIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVRTMLDGTNRSQT---DW 980
            LIIT+I VPP  IRPSV++  + SNENDITERLK IIQANA +R  L  ++ S      W
Sbjct: 249  LIITNIVVPPIAIRPSVVMDESLSNENDITERLKNIIQANAVLRQELQESSVSSKFLDGW 308

Query: 981  EYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTGRTVIS 1160
            E LQ EVAQ+INS  +G+P +MQ+ + L+GFVQRLKGK GRFR NLS KRVE+TGRTVIS
Sbjct: 309  EILQNEVAQFINSEVRGIPFYMQSTKQLAGFVQRLKGKHGRFRGNLSGKRVEYTGRTVIS 368

Query: 1161 PDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAKFLAFPDGSKVS 1340
            PDPNLKI+EV +PILMA  LT+PERVT HNIEKLRQCVRNG +KYPGA+ L    G   S
Sbjct: 369  PDPNLKISEVAIPILMASILTYPERVTHHNIEKLRQCVRNGPDKYPGARMLRRDGGHSWS 428

Query: 1341 LMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNES 1520
            L    RKR ADEL+IG IVDRHLEDGD+VLFNRQPSLHRMSIMSHRA+IMPWRTLRFNES
Sbjct: 429  LKVLCRKRAADELRIGDIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNES 488

Query: 1521 VCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSFL 1700
            VCNPYNADFDGDEMN+HVPQTE+ARTEA+ LMGVQNNLCTPKNGEILVASTQDFLTSSFL
Sbjct: 489  VCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFLTSSFL 548

Query: 1701 ITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNASLRVY 1880
            +TRKDTFYDR+AF+ +C+++GDG+D +DLPTP I KP+ELW+GKQLFS+L+RP+A+ +VY
Sbjct: 549  VTRKDTFYDRSAFTNICTFIGDGLDLIDLPTPAIVKPVELWSGKQLFSLLLRPHANFKVY 608

Query: 1881 VNLTVTEKTFTK--SWKRE-KTMCPNDGFVYFRNSELISGQLGKATLGNGDKN 2030
            VNLTV EKT+TK    KRE KT+CPNDGFVYFRN+ELISGQ+GK TLGNG+K+
Sbjct: 609  VNLTVKEKTYTKLDDKKRELKTLCPNDGFVYFRNTELISGQIGKVTLGNGNKD 661


>gb|EYU39043.1| hypothetical protein MIMGU_mgv1a000232mg [Mimulus guttatus]
          Length = 1394

 Score =  870 bits (2249), Expect = 0.0
 Identities = 436/657 (66%), Positives = 523/657 (79%), Gaps = 9/657 (1%)
 Frame = +3

Query: 87   TTLFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGLLDSR 266
            T  FTK PY+ED GPR++ SI+FS  S AE+ K  EV++ K AYYD+++KPI++GLLD R
Sbjct: 6    TIQFTKRPYVEDVGPRRIESIQFSTFSAAEVLKAGEVEVNKIAYYDENRKPIDNGLLDQR 65

Query: 267  MGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRILLAE 446
            MGP NK+ +C TC G F  CPGHYGYLPL LPVYNVG+   I +ILKCICK+CSR+LLA+
Sbjct: 66   MGPANKSILCKTCGGKFVDCPGHYGYLPLALPVYNVGFFLTIIDILKCICKNCSRVLLAD 125

Query: 447  IPRKDYLRRMRTQKIAQ-KKTDMQKIIIKTCNT-PGLKN---CSRCGYVNGIVKKATGML 611
               + +L++MR  K    KK ++QK ++K CN+  G K    CSRCGY+NG+VKKA   L
Sbjct: 126  KDHQVFLKQMRNPKCETLKKIEIQKRVVKKCNSLAGSKRAVKCSRCGYINGMVKKAKEPL 185

Query: 612  GIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEVLYL 791
             I HDR+K+ D  ++E R+A++H K+  +G+  ++  + P     L + MLDEDCE+LYL
Sbjct: 186  KIQHDRAKVVDNCLDERRSALAHTKD-IKGNPVVISTIDPKTAYHLLENMLDEDCELLYL 244

Query: 792  ADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARV-RTMLDGTNRS 968
             DRPEKLI+T+I VPP  IRPSV      SNENDIT RLK+IIQ NA V + M D +++S
Sbjct: 245  HDRPEKLIVTNILVPPIAIRPSVFSTRAMSNENDITSRLKQIIQINAAVLQEMSDQSSQS 304

Query: 969  QT---DWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEF 1139
            Q+   +W+ LQ+EVAQYINS  +    + +  +PLSGFVQRLKGKQGRFR NLS KRVEF
Sbjct: 305  QSLTNNWDSLQVEVAQYINSDVRVPLQYSENTKPLSGFVQRLKGKQGRFRGNLSGKRVEF 364

Query: 1140 TGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAKFLAF 1319
            TGRTVISPDPNLKI EV VPILMAQ L++PERV+ HNIE+LRQCVRNG  KYPGAKF+  
Sbjct: 365  TGRTVISPDPNLKINEVAVPILMAQILSYPERVSHHNIERLRQCVRNGPTKYPGAKFIKH 424

Query: 1320 PDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWR 1499
            PDG+++SL    R R AD+LK GYIV RHL+DGD++LFNRQPSLHRMSIMSHRA+IMPWR
Sbjct: 425  PDGTEISLTGKIRHRAADDLKYGYIVCRHLQDGDIILFNRQPSLHRMSIMSHRARIMPWR 484

Query: 1500 TLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQD 1679
            TLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL LMGVQNNLCTPKNGEILVASTQD
Sbjct: 485  TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQD 544

Query: 1680 FLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRP 1859
            FLTSS+LITRKDTFYDRA+FSL+CSYMGD MD +DLPTP + KP+ELWTGKQLFS+L+RP
Sbjct: 545  FLTSSYLITRKDTFYDRASFSLICSYMGDAMDPIDLPTPALVKPVELWTGKQLFSILLRP 604

Query: 1860 NASLRVYVNLTVTEKTFTKSWKREKTMCPNDGFVYFRNSELISGQLGKATLGNGDKN 2030
            +A +RVYVNLTV EK + KS    +TMCP DGFVY RNSELISGQLGKATLGNG K+
Sbjct: 605  HAKMRVYVNLTVAEKNYGKS---GETMCPKDGFVYIRNSELISGQLGKATLGNGSKD 658


>ref|NP_001190573.1| nuclear RNA polymerase C1 [Arabidopsis thaliana]
            gi|332009887|gb|AED97270.1| nuclear RNA polymerase C1
            [Arabidopsis thaliana]
          Length = 1391

 Score =  870 bits (2247), Expect = 0.0
 Identities = 443/679 (65%), Positives = 520/679 (76%), Gaps = 27/679 (3%)
 Frame = +3

Query: 75   ETQQTTLFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGL 254
            ET+    FTK+PYIED GP K+ SI FS+ S+ E+ K AEVQ+W    YD S KP E+GL
Sbjct: 2    ETKMEIEFTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGL 61

Query: 255  LDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICK----- 419
            LD RMGPPNK  IC TC G+F  CPGHYGYL L+LPVYNVGY N I +ILKCICK     
Sbjct: 62   LDPRMGPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKVTELA 121

Query: 420  -----SCSRILLAEIPRKDYLRRMRTQKIAQ-KKTDMQKIIIKTCNTPGLKN---CSRCG 572
                  CS +LL E   +D+LR+MR  ++   KKT++ K ++K C+T   +    C +CG
Sbjct: 122  DYVSLRCSNMLLDEKLYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCG 181

Query: 573  YVNGIVKKATGM--LGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLS 746
            Y+NG+VKK      +GI HDRSKI    ++EC++A+SH K+ +     + Y+L P  VL 
Sbjct: 182  YLNGMVKKIAAQFGIGISHDRSKIHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVLG 241

Query: 747  LFKKMLDEDCEVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQA 926
            LFK+M D+DCE+LY+A RPE LIIT + VPP  IRPSV++GG +SNEND+T RLK+II  
Sbjct: 242  LFKRMSDKDCELLYIAYRPENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILG 301

Query: 927  NARVRTMLDGTNRSQTD---WEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQ 1097
            NA +  +L     S  +   W+ +QIEVA+YINS  +G   +     PLSG +QRLKGK 
Sbjct: 302  NASLHKILSQPTSSPKNMQVWDTVQIEVARYINSEVRGCQ-NQPEEHPLSGILQRLKGKG 360

Query: 1098 GRFRQNLSAKRVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVR 1277
            GRFR NLS KRVEFTGRTVISPDPNLKITEVG+PILMAQ LTFPE V+ HNIEKLRQCVR
Sbjct: 361  GRFRANLSGKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVR 420

Query: 1278 NGSNKYPGAKFLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHR 1457
            NG NKYPGA+ + +PDGS  +L+   RKR ADEL IG IVDRHL++GDVVLFNRQPSLHR
Sbjct: 421  NGPNKYPGARNVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHR 480

Query: 1458 MSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLC 1637
            MSIM HRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+TLMGVQNNLC
Sbjct: 481  MSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLC 540

Query: 1638 TPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIE 1817
            TPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL+CSYMGDGMD +DLPTPTI KPIE
Sbjct: 541  TPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIE 600

Query: 1818 LWTGKQLFSVLVRPNASLRVYVNLTVTEKTFTKSWKR-EKTMCPNDGFVYFRNSELISGQ 1994
            LWTGKQ+FSVL+RPNAS+RVYV L V EK F K     ++TMC NDG+VYFRNSELISGQ
Sbjct: 601  LWTGKQIFSVLLRPNASIRVYVTLNVKEKNFKKGEHGFDETMCINDGWVYFRNSELISGQ 660

Query: 1995 LGKAT-------LGNGDKN 2030
            LGKAT       LGNG+K+
Sbjct: 661  LGKATLALDIFPLGNGNKD 679


>ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Glycine
            max]
          Length = 1391

 Score =  869 bits (2246), Expect = 0.0
 Identities = 439/657 (66%), Positives = 526/657 (80%), Gaps = 12/657 (1%)
 Frame = +3

Query: 96   FTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGLLDSRMGP 275
            FTKEP++ED GPRK+ ++KFS  SE+EI K AEVQ+WK +YYD  KKPI  GLLD RMGP
Sbjct: 11   FTKEPFMEDTGPRKIKNMKFSTLSESEISKIAEVQVWKGSYYDSFKKPIHGGLLDPRMGP 70

Query: 276  PNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRILLAEIPR 455
             NK+ +CATC G+F  CPGHYGYL L LPV+NVGYL+ I  ILKCICK C+RILL E  R
Sbjct: 71   ANKSLVCATCDGNFHDCPGHYGYLNLALPVFNVGYLSTIVEILKCICKGCARILLDEDTR 130

Query: 456  KDYLRRMRTQKIAQ-KKTDMQKI-IIKTCNTPGLKNCSRCGYVNGIVKKATGMLGIIHDR 629
            K +L++MR+ K ++  K D  K+ +IK C+   + NC RCGY+NG VKK    L IIHD 
Sbjct: 131  KKHLKKMRSSKKSELDKIDFVKVRVIKDCSK--VVNCPRCGYINGSVKKLPASLTIIHDC 188

Query: 630  SKIADKSVEECRAAVSHIKEQSRGSVNMVY-MLTPAKVLSLFKKMLDEDCEVLYLADRPE 806
            SK  +  VEE  +A+S +K+ SR + N+   +L P +VLSLFK+MLDEDCE+LY+A+RPE
Sbjct: 189  SKCRNYIVEELDSALSRMKD-SRATTNVSNRILNPFQVLSLFKRMLDEDCELLYVAERPE 247

Query: 807  KLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVRTMLDGTNRSQT---D 977
            KLI+T++ VPP  IRPSV++  + SNENDITERLK IIQANA +R  L  +  S      
Sbjct: 248  KLIMTNVVVPPIAIRPSVVMDESLSNENDITERLKNIIQANAVLRQELQESTFSSKFLDG 307

Query: 978  WEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTGRTVI 1157
            W+ LQ EVAQ+INS  +G+P +MQ  + L+GFVQRLKGK GRFR NLS KRVE+TGRTVI
Sbjct: 308  WDILQNEVAQFINSDVRGIPFYMQPTKQLAGFVQRLKGKHGRFRGNLSGKRVEYTGRTVI 367

Query: 1158 SPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAKFLAFPDGSKV 1337
            SPDPNLKI+EV +PI MA+ LT+PERVT HNIEKLRQCVRNG +KYPGA+ L    G   
Sbjct: 368  SPDPNLKISEVAIPIHMARILTYPERVTHHNIEKLRQCVRNGPDKYPGARMLRRDGGHSW 427

Query: 1338 SLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNE 1517
            SL    RKR ADEL+IG IVDRHLEDGD+VLFNRQPSLHRMSIM HRA+IMPWRTLRFNE
Sbjct: 428  SLKVLCRKRAADELRIGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRTLRFNE 487

Query: 1518 SVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSF 1697
            SVCNPYNADFDGDEMN+HVPQTE+ARTEA+ LMGV+NNLCTPKNGEILVASTQDFLTSSF
Sbjct: 488  SVCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVENNLCTPKNGEILVASTQDFLTSSF 547

Query: 1698 LITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNASLRV 1877
            LITRKDTFYDR+ FSL+CSY+GDGMD +DLPTP I KP+ELW+GKQLFS+++RP+A++RV
Sbjct: 548  LITRKDTFYDRSTFSLICSYIGDGMDPIDLPTPAIVKPVELWSGKQLFSIILRPHANMRV 607

Query: 1878 YVNLTVTEKTFTKSWKRE------KTMCPNDGFVYFRNSELISGQLGKATLGNGDKN 2030
            YVNLTV E+ +T+  K +      KT+CPNDGFVYFRNSELISGQ+GK TLGNG+K+
Sbjct: 608  YVNLTVKERNYTEDKKIKDKKIEWKTLCPNDGFVYFRNSELISGQVGKVTLGNGNKD 664