BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia22_contig00004311
         (3438 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   909   0.0  
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   865   0.0  
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     858   0.0  
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     845   0.0  
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        838   0.0  
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   820   0.0  
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   815   0.0  
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]   813   0.0  
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     789   0.0  
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   777   0.0  
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   776   0.0  
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   761   0.0  
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi...   743   0.0  
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar...   743   0.0  
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]         735   0.0  
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi...   728   0.0  
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop...   712   0.0  
gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidop...   704   0.0  
gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]      694   0.0  
emb|CAN66323.1| hypothetical protein VITISV_007384 [Vitis vinifera]   669   0.0  

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  909 bits (2348), Expect = 0.0
 Identities = 471/890 (52%), Positives = 595/890 (66%), Gaps = 31/890 (3%)
 Frame = -2

Query: 3437 RTKGILDYIHSDVWGPSRVTSQGGKRWFVTFIDDFSRRVWVYTMRQKSEVREIFIKWKAL 3258
            RTKG LDYIHSD WGP RV S GG R+FV+ IDD+SR  WVY M+ KSE  + F +WK L
Sbjct: 465  RTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKIL 524

Query: 3257 VEKQTGRAVKRIRSDNGGEYTEDPLKEFCEQHGIARHFTVKGTPQQNGVAERMNRTLLEK 3078
            +E QTG+ +KR+R+DNG E+      +FC+  GIARH TV+ TPQQNGVAERMN+TLLE+
Sbjct: 525  MENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAERMNQTLLER 584

Query: 3077 ARCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRIFGCPA 2898
            ARCM SNAGL + +WAEAV+TACYLINR P T I  KTPME+W+G    Y NL+ FGC A
Sbjct: 585  ARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGKAADYSNLKAFGCTA 644

Query: 2897 YYHITEDKIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMANVQRFTGW 2718
            YYH++E K+  RA K +F+GY +GVKG+R+W    K++++SR+V FDE+ +         
Sbjct: 645  YYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEKRVIMSRNVVFDESPLLRTIV---- 700

Query: 2717 DSPTENSELSRDVDDDQVEYIAPRTSRPIRDPESVSDSDMGQTSPSQGEISTDLEGNGTD 2538
              PT  SE      D QVE+   +    +++PE        +T   +             
Sbjct: 701  -KPTTTSETGSL--DKQVEFQVIQNESDLKEPEEEDQEPQTETDIPES------------ 745

Query: 2537 LDXXXXXXXXXXXXXXEPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXRFGYEE---YASC 2367
                             P   H         S+A+            R+G+E+   YA  
Sbjct: 746  ----------------MPSDIHQ--------SIAQDRPRRVGVRPPTRYGFEDMVGYALQ 781

Query: 2366 AFIAYDEEEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGKKPIGCKWVF 2187
                 D  EP+TY+ A+ SS S +W  AM +E++SLHKN+TW+LV  P G+K I CKWVF
Sbjct: 782  VAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVF 841

Query: 2186 VVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRILLALVAQYDM 2007
              K+GI  +    +GV+YKAR+VA+G+ Q+EGVDYNEIFSPVV+HTSIR+LLA+VA  ++
Sbjct: 842  KKKEGISPA----EGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNL 897

Query: 2006 ELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSPRQWYLRFDR 1827
            ELEQ+DVKTAFLHG+LEE+IYM+QPDGF V GKE+HVCKLKKSLYGLKQSPRQWY RFD 
Sbjct: 898  ELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDS 957

Query: 1826 FMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSK----------------- 1698
            +MVK  Y RS YD CVYY +LN  S+IYL+LYVDDMLIAAK K                 
Sbjct: 958  YMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMK 1017

Query: 1697 -----------XXXXXRKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTPLGAQFRLTALQS 1551
                            R+  +L +SQR Y++KVL+RFGMS SKP+ TP  A   LTA+ +
Sbjct: 1018 DLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFA 1077

Query: 1550 PTTEVEKEYMANVPYASAVGSLMYAMVCTRPDIAHAVSMVSRYMSNPGKQHWLAVKWVLR 1371
            P +E EKEYM+ VPYASAVGSLMYAMVCTRPD+AHAVS+VSR+M  PG++HW AVK + R
Sbjct: 1078 PQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFR 1137

Query: 1370 YLRGTVSKGLVYQRTTRPCIRGFVDADYAGDLDRRRSTTGFSFVLGDGPICWRSMLQSVV 1191
            YLRGT   GL+Y   T+  + G+ D+DYAGD+D RRS TG+ F LG   + W++ LQ  V
Sbjct: 1138 YLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKATLQPTV 1197

Query: 1190 ALSTTEAEYMAVTEAVKEAIWLQNLISELGVRQQVISVSCDNQSAIHLAKNQVHHARTKH 1011
             LSTTEAEYMA+TEA KE IWL+ L+S+LG+     +V CD+ SAI LAK+QVHH RTKH
Sbjct: 1198 TLSTTEAEYMALTEAAKEGIWLKGLVSDLGLHHDQATVYCDSLSAICLAKDQVHHERTKH 1257

Query: 1010 IDVRYHFIRDEIEKKIVHLEKVDTADNPADMLTKVVGGVKFEHCLNLLHI 861
            IDVRYHF+R E   K + ++KV TADNPADM TK V   KF+HCL+LL+I
Sbjct: 1258 IDVRYHFLRSE---KRIKVKKVGTADNPADMFTKPVPQSKFQHCLDLLNI 1304


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  865 bits (2235), Expect = 0.0
 Identities = 461/898 (51%), Positives = 599/898 (66%), Gaps = 38/898 (4%)
 Frame = -2

Query: 3434 TKGILDYIHSDVWGPSRVTSQGGKRWFVTFIDDFSRRVWVYTMRQKSEVREIFIKWKALV 3255
            T+GILDY+HSD+WGP+R TS GG R+ +T +DD+SR+VW Y ++ K +  ++F +WK +V
Sbjct: 695  TEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMV 754

Query: 3254 EKQTGRAVKRIRSDNGGEYTEDPLKEFCEQHGIARHFTVKGTPQQNGVAERMNRTLLEKA 3075
            E+QT R VK +R+DNG E+     K +C+  GI RH+TV  TPQQNGVAERMNRT++ KA
Sbjct: 755  ERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKA 814

Query: 3074 RCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRIFGCPAY 2895
            RC+ SNAGL K +WAEAV+TACYLINRSPS AI  KTP+EVW+G+P  Y +LR+FGC AY
Sbjct: 815  RCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAY 874

Query: 2894 YHITEDKIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMANVQRFTGWD 2715
             H+   K+  RA+K IFLGYP GVKGY+LWC  TKK+V+SR+V F E+VM +       D
Sbjct: 875  AHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLH-------D 927

Query: 2714 SPTENSEL-SRDVDDDQVEYIAPRTSRPIRDPESV---------SDSDMGQTSPSQGEIS 2565
             P+ N  + S++    QVE++      P ++  ++         S+S + Q SP +    
Sbjct: 928  KPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDEPVIEDSNSSIVQQSPKRSIAK 987

Query: 2564 TDLEGNGTDLDXXXXXXXXXXXXXXEPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXRFGY 2385
               + N                   +P Q++ EE      +L+                 
Sbjct: 988  DRPKRN------------------IKPPQRYIEEANIVAYALSVA--------------- 1014

Query: 2384 EEYASCAFIAYDEEEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGKKPI 2205
            EE    A       EP+TY  A+ S     W  AM +E++SL KN TWELVK+PK KKPI
Sbjct: 1015 EEIEGNA-------EPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPI 1067

Query: 2204 GCKWVFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRILLAL 2025
             CKW+F  K+GI  S    D  RYKARL+AKGY+Q  G+D+N++FSPVVKH+SIR LL++
Sbjct: 1068 RCKWIFKRKEGISSS----DEARYKARLIAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSI 1123

Query: 2024 VAQYDMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSPRQW 1845
            VA +D ELEQMDVKTAFLHG+LEEDIYM QP GFVV GKE+ VC+LKKSLYGLKQSPRQW
Sbjct: 1124 VAMHDYELEQMDVKTAFLHGELEEDIYMEQPKGFVVPGKENLVCRLKKSLYGLKQSPRQW 1183

Query: 1844 YLRFDRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSKXXXXXRK---- 1677
            Y RFD FM+ Q+++RS YD CVY K ++ GS IYLLLYVDDMLIAAK K      K    
Sbjct: 1184 YKRFDSFMLSQKFRRSNYDSCVYLKVVD-GSAIYLLLYVDDMLIAAKDKSEIAKLKAQLS 1242

Query: 1676 -------LG-----------------RLTVSQRDYVEKVLSRFGMSDSKPVTTPLGAQFR 1569
                   LG                 +L +SQ+ Y+EKVL RF M D+KPV+TPL A FR
Sbjct: 1243 SEFEMKDLGAAKKILGMEITRKRHSFKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFR 1302

Query: 1568 LTALQSPTTEVEKEYMANVPYASAVGSLMYAMVCTRPDIAHAVSMVSRYMSNPGKQHWLA 1389
            L++   P ++ + EYM+ VPY+SAVGSLMYAMVC+RPD++HA+S+VSRYM+NPGK+HW A
Sbjct: 1303 LSSDLCPQSDYDIEYMSRVPYSSAVGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKA 1362

Query: 1388 VKWVLRYLRGTVSKGLVYQRTTRPCIRGFVDADYAGDLDRRRSTTGFSFVLGDGPICWRS 1209
            V+W+ RYLRGT S  L + R +R  + G+VD+D+AGDLDR RS  G+ F +G   + W++
Sbjct: 1363 VQWIFRYLRGTSSACLQFGR-SRDGLVGYVDSDFAGDLDRGRSLAGYVFTIGGCAVSWKA 1421

Query: 1208 MLQSVVALSTTEAEYMAVTEAVKEAIWLQNLISELGVRQQVISVSCDNQSAIHLAKNQVH 1029
             LQ+ VALSTTEAEYMA++EA KEAIWL+ L + L      I++ CD+QSAI L K+Q+ 
Sbjct: 1422 SLQATVALSTTEAEYMAISEACKEAIWLRGLYTVLCAVTSCINIFCDSQSAICLTKDQMF 1481

Query: 1028 HARTKHIDVRYHFIRDEIEKKIVHLEKVDTADNPADMLTKVVGGVKFEHCLNLLHISD 855
            H RTKHIDVRYHFIR  I +  V + K+   DNPADM+TK V   KFE C +L+ +SD
Sbjct: 1482 HERTKHIDVRYHFIRGLIAEGDVKICKISIHDNPADMMTKPVPATKFELCSSLVILSD 1539


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  858 bits (2217), Expect = 0.0
 Identities = 456/885 (51%), Positives = 579/885 (65%), Gaps = 35/885 (3%)
 Frame = -2

Query: 3437 RTKGILDYIHSDVWGPSRVTSQGGKRWFVTFIDDFSRRVWVYTMRQKSEVREIFIKWKAL 3258
            ++KG+LDYIH+DVWGPS   S+GG R+FV+FIDDFSR+VW++ M+ K+EV   F +WKA 
Sbjct: 448  KSKGVLDYIHTDVWGPSATISKGGARYFVSFIDDFSRKVWIFFMKTKNEVFTKFKEWKAE 507

Query: 3257 VEKQTGRAVKRIRSDNGGEYTEDPLKEFCEQHGIARHFTVKGTPQQNGVAERMNRTLLEK 3078
            V  QTGR +K +RSDNGGEY +    + C+  GI RHFTVK +PQQNGVAERMNRTL+EK
Sbjct: 508  VGNQTGRKIKCLRSDNGGEYRDKKFLQLCKDEGITRHFTVKKSPQQNGVAERMNRTLMEK 567

Query: 3077 ARCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRIFGCPA 2898
             R MR +AGL + +WAEA N ACYLINRSPS AI  K   EVW+G P  Y NLR+FGC A
Sbjct: 568  ERSMRFHAGLPEEFWAEAANHACYLINRSPSRAINFKCAEEVWSGKPVDYSNLRVFGCSA 627

Query: 2897 YYHITED---KIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMANVQRF 2727
            Y HI +D   K+  ++++ +F+G+ +GVKGY+LW +  +K V+S                
Sbjct: 628  YAHIPKDERTKLEPKSLECLFIGFEKGVKGYKLWDIVNEKKVIS---------------- 671

Query: 2726 TGWDSPTENSELSRDVDDDQVEYIAPRTSRPIRDPESVSDSDMGQTSPSQG--EISTDLE 2553
                         RDV  D+ E I+   ++P     SV+DS+       QG  E++ +  
Sbjct: 672  -------------RDVVFDEREAISISLAKP-----SVADSEAQVEQNEQGNDEVAIEEP 713

Query: 2552 GNGTDLDXXXXXXXXXXXXXXEPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXRFGYE-EY 2376
             +                    PI Q  E  ++   S+A             RFG+E E 
Sbjct: 714  EHQQQPTVMAQVEQSPQRGQNSPIPQAPESFKR---SIA-LDKPKRNRKPIQRFGFEPEE 769

Query: 2375 ASCAFIAYDEEEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGKKPIGCK 2196
                 ++  + +PTTY  A+ S  SA W  AM+EE++SLHKN  WELV  PK +K +GCK
Sbjct: 770  DVSRALSISQGDPTTYEDAIESVESAGWIGAMTEEMESLHKNSVWELVPKPKERKLVGCK 829

Query: 2195 WVFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRILLALVAQ 2016
            WVF  K+GI +     D + YKARLVAKGY+QKEGVDY+EIFSPVVKHTSIR+LL++ AQ
Sbjct: 830  WVFRKKEGIHED----DAITYKARLVAKGYSQKEGVDYDEIFSPVVKHTSIRLLLSIAAQ 885

Query: 2015 YDMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSPRQWYLR 1836
            YDME+EQMDVKTAFLHGDLEEDIYMSQP+GFV  GKE+ VC+LKKSLYGLKQSPRQWY  
Sbjct: 886  YDMEIEQMDVKTAFLHGDLEEDIYMSQPEGFVETGKENLVCRLKKSLYGLKQSPRQWYKP 945

Query: 1835 FDRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSK-------------- 1698
            FD +M+K  Y R +YD CVYY     G  I LLLYVDDMLIA +                
Sbjct: 946  FDTYMLKIGYTRCQYDCCVYYHVFEDGKVILLLLYVDDMLIACRDMLQIQKLKKKLGAEF 1005

Query: 1697 --------------XXXXXRKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTPLGAQFRLTA 1560
                               R  G++ +SQ  Y+ K+L RF M+++K V+ PL A FRL+A
Sbjct: 1006 DMKDLGAAQKILGIEIRRDRNAGKIWLSQEKYIMKILERFNMAEAKVVSIPLAAHFRLSA 1065

Query: 1559 LQSPTTEVEKEYMANVPYASAVGSLMYAMVCTRPDIAHAVSMVSRYMSNPGKQHWLAVKW 1380
             Q P+ + E + M NVPYASAVG LMYAM+CTRPD+A A+S+VS+YMSNPGK+HW AVKW
Sbjct: 1066 EQRPSDQKEIDMMKNVPYASAVGCLMYAMICTRPDLAQAMSVVSKYMSNPGKRHWEAVKW 1125

Query: 1379 VLRYLRGTVSKGLVYQRTT-RPCIRGFVDADYAGDLDRRRSTTGFSFVLGDGPICWRSML 1203
            + +YL+ T   G++++R     C+ GFVD+D+AGDLDRRRST G+ F  G GP+ W++ L
Sbjct: 1126 IFKYLKNTRQLGIMFERRQGEACVAGFVDSDFAGDLDRRRSTAGYVFTCGGGPVSWKATL 1185

Query: 1202 QSVVALSTTEAEYMAVTEAVKEAIWLQNLISELGVRQQVISVSCDNQSAIHLAKNQVHHA 1023
            Q+V ALSTTEAEYMA+TEA KEAIWL  L  +LGV Q+ + V CD+QSAIHLAKNQV HA
Sbjct: 1186 QAVTALSTTEAEYMALTEASKEAIWLNGLAGQLGVHQEGVVVKCDSQSAIHLAKNQVFHA 1245

Query: 1022 RTKHIDVRYHFIRDEIEKKIVHLEKVDTADNPADMLTKVVGGVKF 888
            RTKHID RYH IRD +E  ++ +EKV T DN AD LTK V   K+
Sbjct: 1246 RTKHIDARYHRIRDWVEAGVIIVEKVHTDDNAADFLTKPVSVEKY 1290


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  845 bits (2184), Expect = 0.0
 Identities = 451/897 (50%), Positives = 591/897 (65%), Gaps = 38/897 (4%)
 Frame = -2

Query: 3434 TKGILDYIHSDVWGPSRVTSQGGKRWFVTFIDDFSRRVWVYTMRQKSEVREIFIKWKALV 3255
            T+GILDY+HSD+WGP+R TS GG R+ +T +DD+SR+VW Y ++ K +  ++F +WK +V
Sbjct: 397  TEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMV 456

Query: 3254 EKQTGRAVKRIRSDNGGEYTEDPLKEFCEQHGIARHFTVKGTPQQNGVAERMNRTLLEKA 3075
            E+QT R VK +R+DNG E      K +C+  GI RH+TV  TPQQNGVAERMNRT++ KA
Sbjct: 457  ERQTERKVKILRTDNGMELCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKA 516

Query: 3074 RCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRIFGCPAY 2895
            RCM SNA L K +WAEAV+TACYLINRSPS AI  KTP+EVW+G+P  Y +LR+FGC AY
Sbjct: 517  RCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAY 576

Query: 2894 YHITEDKIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMANVQRFTGWD 2715
             H+   K+  R +K IFLGY  GVKGY+LWC  TKK+V+SR+V F E++M +       D
Sbjct: 577  AHVDNGKLEPRVIKCIFLGYLSGVKGYKLWCPETKKVVISRNVVFHESIMLH-------D 629

Query: 2714 SPTENSEL-SRDVDDDQVEYIAPRTSRPIRDPESV---------SDSDMGQTSPSQGEIS 2565
             P+ N  + S++    QVE++      P ++  ++         SDS + Q SP +  I+
Sbjct: 630  KPSTNVPVESQEKVSVQVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVQQSPKR-SIA 688

Query: 2564 TDLEGNGTDLDXXXXXXXXXXXXXXEPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXRFGY 2385
             D     T                 +P +++ EE      +L                  
Sbjct: 689  KDRPKRNT-----------------KPPRRYIEEANIVAYAL------------------ 713

Query: 2384 EEYASCAFIAYDEEEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGKKPI 2205
                S A       EP+TY  A+ S     W  AM +E++SL KN +WEL K+PK KKPI
Sbjct: 714  ----SVAEEIEGNAEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHSWELEKLPKEKKPI 769

Query: 2204 GCKWVFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRILLAL 2025
             CKW+F  K+G+  S    D  RYKARLVAKGY+Q  G+D+N++FSPVVKH+SIR LL++
Sbjct: 770  RCKWIFKRKEGMSPS----DEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSI 825

Query: 2024 VAQYDMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSPRQW 1845
            VA +D ELEQMDVKTAFLHG+LEEDIYM QP+GFVV GKE+ VC+LKKSLYGLKQSPRQW
Sbjct: 826  VAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQW 885

Query: 1844 YLRFDRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSK----------- 1698
            Y RFD FM+ Q+++RS YD CVY K ++ GS IYLLLYVDDMLIAAK K           
Sbjct: 886  YKRFDSFMLSQKFRRSNYDSCVYLKVVD-GSAIYLLLYVDDMLIAAKDKSEIAKLKAQLS 944

Query: 1697 -----------------XXXXXRKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTPLGAQFR 1569
                                  R  G+L +SQ+ Y+EKVL RF M D+K V+T L A FR
Sbjct: 945  SEFEMKDLGAAKKILGMEITRERHSGKLYLSQKCYIEKVLHRFNMHDAKLVSTLLAAHFR 1004

Query: 1568 LTALQSPTTEVEKEYMANVPYASAVGSLMYAMVCTRPDIAHAVSMVSRYMSNPGKQHWLA 1389
            L++   P +  + EYM+ VPY+SAV SLMYAMVC+RPD++HA+S+VSRYM+NPGK+HW A
Sbjct: 1005 LSSDLCPQSAYDIEYMSRVPYSSAVSSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKA 1064

Query: 1388 VKWVLRYLRGTVSKGLVYQRTTRPCIRGFVDADYAGDLDRRRSTTGFSFVLGDGPICWRS 1209
            V+W+ RYLRGT S  L + R++   + G+VD+D+AGDLDRRRS TG+ F +G   + W++
Sbjct: 1065 VQWIFRYLRGTSSACLQFGRSSDGLV-GYVDSDFAGDLDRRRSLTGYVFTVGGCAVSWKA 1123

Query: 1208 MLQSVVALSTTEAEYMAVTEAVKEAIWLQNLISELGVRQQVISVSCDNQSAIHLAKNQVH 1029
             LQ+ VALSTTEAEYMA++EA KE IWL+ L +EL      I++ CD+QSAI L K+Q+ 
Sbjct: 1124 SLQATVALSTTEAEYMAISEACKEVIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMF 1183

Query: 1028 HARTKHIDVRYHFIRDEIEKKIVHLEKVDTADNPADMLTKVVGGVKFEHCLNLLHIS 858
            H RTKHID+RYHFIR  I +  V + K+ T DNP DM+TK V   KFE C +L+ ++
Sbjct: 1184 HERTKHIDLRYHFIRGVIAEGDVKVCKISTHDNPVDMMTKPVPATKFELCSSLVGVT 1240


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  838 bits (2165), Expect = 0.0
 Identities = 440/894 (49%), Positives = 579/894 (64%), Gaps = 36/894 (4%)
 Frame = -2

Query: 3434 TKGILDYIHSDVWGPSRVTSQGGKRWFVTFIDDFSRRVWVYTMRQKSEVREIFIKWKALV 3255
            +K +LDY H D WGP++V S  G R+F++ IDD+SR+VW+Y ++ K +  E F  WK+LV
Sbjct: 478  SKQVLDYAHIDHWGPAQVPSLSGGRYFMSLIDDYSRKVWIYILKIKDQALEKFKVWKSLV 537

Query: 3254 EKQTGRAVKRIRSDNGGEYTEDPLKEFCEQHGIARHFTVKGTPQQNGVAERMNRTLLEKA 3075
            E Q+   +K +R+DNG E+     +E+C++HGI RH TV+ TPQQNG+AERMNRTL++K 
Sbjct: 538  ENQSDFKLKCLRTDNGLEFCSKVFEEYCQKHGIKRHKTVRFTPQQNGLAERMNRTLVDKT 597

Query: 3074 RCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRIFGCPAY 2895
            RCM  N+ L + +WAEAVNTA YL+NRSPS+AIG KTP E+W G P  Y NLR+FGCPAY
Sbjct: 598  RCMLINSKLPRSFWAEAVNTASYLVNRSPSSAIGFKTPEELWNGKPANYQNLRVFGCPAY 657

Query: 2894 YHITEDKIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMA--NVQRFTG 2721
             HI + K+  RA+K +F+GYP+GVKGY++WC    K +VSRDV F E+V+   + +   G
Sbjct: 658  LHINQGKLEARALKGVFVGYPDGVKGYKIWCKDQGKCIVSRDVVFHESVLLKESAEHDAG 717

Query: 2720 W-DSPTENSELSRDVDDDQVEYIAPRTSRPIRDPESVSDSDMGQTSPSQGEISTDLEGNG 2544
              D+P  N     +     VE +  ++S    + E+ SD +       + E+S   E   
Sbjct: 718  LQDNPAANKRSGSETSKVNVELLTDKSS----EKEAASDDERATAESEEHEVS---ELPQ 770

Query: 2543 TDLDXXXXXXXXXXXXXXEPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXRFGYEEYASCA 2364
             DL                P++                            +GY +  + A
Sbjct: 771  ADLQNYQLARDRVRREVRAPVR----------------------------YGYADLIAYA 802

Query: 2363 FIAYDE---EEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGKKPIGCKW 2193
             +  DE   EEP  +  A+ S H  +W +AM +E++SL +N+TW L+  P  K+ I CKW
Sbjct: 803  LLCADEVTIEEPANFSEAMESVHCDKWLEAMQDEMESLQRNQTWTLIPNPGNKRLINCKW 862

Query: 2192 VFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRILLALVAQY 2013
            +F   +GIPD    V+  +YKARLVA+G+ Q+EGVD+NEIFSPVVKH+SIRILLA+VA  
Sbjct: 863  IFKRNEGIPD----VEPPKYKARLVARGFTQREGVDFNEIFSPVVKHSSIRILLAMVALL 918

Query: 2012 DMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSPRQWYLRF 1833
            D+ELEQMDVKTAFLHG+LEE I M+QP+GF    KED+VC L KSLYGLKQSPRQWY RF
Sbjct: 919  DLELEQMDVKTAFLHGNLEEQILMAQPEGFECKDKEDYVCLLHKSLYGLKQSPRQWYRRF 978

Query: 1832 DRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSKXXXXX---------- 1683
            D FMV + Y+RS YD CVY+   + G   YLLLYVDDMLIA+K K               
Sbjct: 979  DDFMVSKGYRRSRYDSCVYFGGSDQGGVAYLLLYVDDMLIASKYKSEIERLKNLLKAEFE 1038

Query: 1682 ------------------RKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTPLGAQFRLTAL 1557
                              R  G L +SQ  Y++KVL RF M D KPV TPLG QF+L+A 
Sbjct: 1039 MKDLGNAKRILGMDIIRDRSAGTLFLSQGKYIKKVLERFEMQDCKPVQTPLGPQFKLSAA 1098

Query: 1556 QSPTTEVEKEYMANVPYASAVGSLMYAMVCTRPDIAHAVSMVSRYMSNPGKQHWLAVKWV 1377
               TT  ++  M   PYA AVGSLMYAMVCTR DIA+AVS+VSRY+S PGK HW AVKW+
Sbjct: 1099 ---TTSEDESQMNEFPYAQAVGSLMYAMVCTRSDIAYAVSVVSRYLSCPGKVHWNAVKWI 1155

Query: 1376 LRYLRGTVSKGLVYQRTTRPCIR--GFVDADYAGDLDRRRSTTGFSFVLGDGPICWRSML 1203
            +RYL+G+ + GL+Y +T    I   GFVD+D+AGDLDRR+ST+ + FVL    I W+S L
Sbjct: 1156 MRYLKGSSTCGLLYGKTKSDKIEVMGFVDSDFAGDLDRRKSTSRYMFVLNSCLISWKSSL 1215

Query: 1202 QSVVALSTTEAEYMAVTEAVKEAIWLQNLISELGVRQQVISVSCDNQSAIHLAKNQVHHA 1023
            QS  ALS+TEAE++A TEAVKEA+WL+ L++EL + Q+++ V CDNQ+AIHL KNQ++H 
Sbjct: 1216 QSGGALSSTEAEFIATTEAVKEAMWLRGLLNELWLNQKIVQVFCDNQNAIHLVKNQMYHE 1275

Query: 1022 RTKHIDVRYHFIRDEIEKKIVHLEKVDTADNPADMLTKVVGGVKFEHCLNLLHI 861
            RTKHIDV+  FIRDE+ K  V + K+ T+ NPAD LTK +   KFE C+NL+ I
Sbjct: 1276 RTKHIDVKLQFIRDEVGKGTVVVSKIHTSVNPADALTKSLPTAKFEFCVNLMGI 1329


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  820 bits (2117), Expect = 0.0
 Identities = 443/900 (49%), Positives = 564/900 (62%), Gaps = 45/900 (5%)
 Frame = -2

Query: 3434 TKGILDYIHSDVWGPSRVTSQGGKRWFVTFIDDFSRRVWVYTMRQKSEVREIFIKWKALV 3255
            T G+L+YIHSD+WGPS V S  G R++VTFIDDFSR+VWVY ++ K EV   F +WK +V
Sbjct: 800  TNGVLEYIHSDLWGPSPVESHSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTMV 859

Query: 3254 EKQTGRAVKRIRSDNGGEYTEDPLKEFCEQHGIARHFTVKGTPQQNGVAERMNRTLLEKA 3075
            EK+TG+ VK +R+DNG E+      EFC + GI RH TV+ TPQQNGVAERMN+TL+++A
Sbjct: 860  EKRTGKVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQTLVQRA 919

Query: 3074 RCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRIFGCPAY 2895
            RCMR +AGLSK +WAEAVNTA YL+NRSPSTAI  KTP EVW+G P+ Y  L+IFGCPAY
Sbjct: 920  RCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAY 979

Query: 2894 YHITEDKIGKRAMKSIFLGYPEGVKGYRLWCL--TTKKIVVSRDVKFDETVMANVQRFTG 2721
             H+++ K+  RAMK IFLGY  GVKGYRLWC    T K ++SRDV FDE+ M   ++  G
Sbjct: 980  AHVSDGKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTFDESAMFGQRKEFG 1039

Query: 2720 WDSPTENSELSRDVDDDQVEYIAPRTSRPIRDPESVSDSDMGQTSPSQGEISTDLEGNGT 2541
                                           D    S +D+G     + E+   +E NG 
Sbjct: 1040 -------------------------------DLAGTSKTDLGANQKVEFEVDAPME-NGV 1067

Query: 2540 DLDXXXXXXXXXXXXXXEPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXRFGYEEYASC-- 2367
            D                +  ++    DQ D  S+A                   Y  C  
Sbjct: 1068 D----------------DTSEEQPVIDQNDSQSIAAXRPRREIRRPM------RYVDCVS 1105

Query: 2366 ---------AFIAYDE---EEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVP 2223
                     A    +E   EEP +Y+ A+ S  S +W  +M +E+ SL KN+TWELV +P
Sbjct: 1106 ANITNPVAFALAVAEEIGREEPRSYKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLP 1165

Query: 2222 KGKKPIGCKWVFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSI 2043
            +G KP+ CKW+F +KDGI +     +  +YK+RLVAK            +FSPVVKH SI
Sbjct: 1166 EGVKPVDCKWLFKIKDGISED----EPPKYKSRLVAK------------VFSPVVKHKSI 1209

Query: 2042 RILLALVAQYDMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLK 1863
            R+LLA+V+ +++EL+Q+DVKTAFLHG+LEE+IYM QP+GFV + K DHVC LKKSLYGLK
Sbjct: 1210 RVLLAMVSVFNLELDQLDVKTAFLHGNLEEEIYMKQPEGFVDSEKSDHVCFLKKSLYGLK 1269

Query: 1862 QSPRQWYLRFDRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSK----- 1698
            QSPRQWY RFD FMV   + R++YD CVY+K L  GS+IYLLLYVDDMLIAAK++     
Sbjct: 1270 QSPRQWYKRFDAFMVSHEFMRNQYDSCVYFKTLPDGSFIYLLLYVDDMLIAAKNRAEINK 1329

Query: 1697 -----------------------XXXXXRKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTP 1587
                                        R  G L VSQ+ Y+EK++  F M  SKPV+TP
Sbjct: 1330 LKQLLSSEFEMKDLGAAKKILGMEIWRDRDAGLLYVSQQKYIEKLMQAFHMDHSKPVSTP 1389

Query: 1586 LGAQFRLTALQSPTTEVEKEYMANVPYASAVGSLMYAMVCTRPDIAHAVSMVSRYMSNPG 1407
            L   F+      P+T+ E EYM +VPY+S VGSLMYAMVCTRPD+A AVS+VSR+MSNPG
Sbjct: 1390 LAQHFKFDHSTLPSTDEEVEYMKSVPYSSVVGSLMYAMVCTRPDLAFAVSVVSRFMSNPG 1449

Query: 1406 KQHWLAVKWVLRYLRGTVSKGLVY-QRTTRPCIRGFVDADYAGDLDRRRSTTGFSFVLGD 1230
            K HW AVKW++RYL+G+ S  LVY        + GF D+D+ GDL +RRS T + F L  
Sbjct: 1450 KAHWEAVKWIMRYLKGSSSVCLVYGNGDVSSGLVGFTDSDHGGDLMKRRSLTCYIFTLFG 1509

Query: 1229 GPICWRSMLQSVVALSTTEAEYMAVTEAVKEAIWLQNLISELGVRQQVISVSCDNQSAIH 1050
              I WR+ LQ  VALSTTEAEYM++TE VKE +WL   +  LG+      + CD+QSA+ 
Sbjct: 1510 CAISWRASLQPTVALSTTEAEYMSLTEGVKEGMWLNGFLGSLGLNLSKPVIYCDSQSALC 1569

Query: 1049 LAKNQVHHARTKHIDVRYHFIRDEIEKKIVHLEKVDTADNPADMLTKVVGGVKFEHCLNL 870
            LAKN V+H RTKHIDVR +FIRD IE+K+  +EKV T  NPADMLTK +   KF+H L L
Sbjct: 1570 LAKNPVYHERTKHIDVRLNFIRDVIEEKLFSIEKVATEVNPADMLTKPITTEKFKHSLGL 1629


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  815 bits (2106), Expect = 0.0
 Identities = 429/891 (48%), Positives = 570/891 (63%), Gaps = 32/891 (3%)
 Frame = -2

Query: 3437 RTKGILDYIHSDVWGPSRVTSQGGKRWFVTFIDDFSRRVWVYTMRQKSEVREIFIKWKAL 3258
            RTKGILDY+H+D+WGPSR  S GG R+ +T IDD+SR+ W Y ++ K +    F + K +
Sbjct: 480  RTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKEWPYFLKHKDDTFAAFKERKVM 539

Query: 3257 VEKQTGRAVKRIRSDNGGEYTEDPLKEFCEQHGIARHFTVKGTPQQNGVAERMNRTLLEK 3078
            +E+QT + VK + +DNGGE+  D   ++C + GI RH T+  TPQQNGVAERMNRT++ K
Sbjct: 540  IERQTEKEVKVLCTDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISK 599

Query: 3077 ARCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRIFGCPA 2898
            ARCM SNA ++K +WAEA NTACYLINRSPS  +  KTP+E+W+G P  Y  LR+FGC A
Sbjct: 600  ARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEIWSGMPADYSQLRVFGCTA 659

Query: 2897 YYHITEDKIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMANVQRFTGW 2718
            Y H+   K+  RA+K +FLGY  GVKGY+LW   T K  +SR+V F+E VM N       
Sbjct: 660  YAHVDNGKLEPRAIKCLFLGYGSGVKGYKLWNPETNKTFMSRNVIFNEFVMFN------- 712

Query: 2717 DSPTENSELSRDV----DDDQVEYIAPRTSRPIRDPESVSDSDMGQTSPSQGEISTDLEG 2550
                    L  DV     D++ +Y++ +        E V D +            T++ G
Sbjct: 713  ------DSLPTDVIPGGSDEEQQYVSVQV-------EHVDDQE------------TEIVG 747

Query: 2549 NGTDLDXXXXXXXXXXXXXXEPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXRFGYEEYAS 2370
            N  D++              EPI  H    +  G   A              F Y E   
Sbjct: 748  N--DVNDTVQHSPSVLQPQDEPIA-HRRTKRSCG---APVRLIEECDMVYYAFSYAEQVE 801

Query: 2369 CAFIAYDEEEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGKKPIGCKWV 2190
                     EP TY  A+ S    +W  A+ EE+QSL KN TWELV +PK KKP+ CKW+
Sbjct: 802  NTL------EPATYTEAVVSGDREKWISAIQEEMQSLEKNGTWELVHLPKQKKPVRCKWI 855

Query: 2189 FVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRILLALVAQYD 2010
            F  K+G+  S    +  R+K RLVAKG++Q  GVDYN++FSPVVKH+SIR   ++V  +D
Sbjct: 856  FKRKEGLSPS----EPPRFKVRLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVTMHD 911

Query: 2009 MELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSPRQWYLRFD 1830
            +ELEQ+DVKT FLHG+LEE+IYM QP+GF+V GKED+VCKLK+SLYGLKQSPRQWY RFD
Sbjct: 912  LELEQLDVKTTFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFD 971

Query: 1829 RFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSKXXXXX----------- 1683
             FM+   +KRSE+D CVY K +N GS IYLLLYVDDMLIAAKSK                
Sbjct: 972  SFMLSHGFKRSEFDSCVYIKFVN-GSPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDM 1030

Query: 1682 -----------------RKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTPLGAQFRLTALQ 1554
                             R  G L +SQ+ Y++KVL RF M D+KPV+TP+   F+L+ALQ
Sbjct: 1031 KDLGAAKKILGMEITRDRNSGLLFLSQQSYIKKVLQRFNMHDAKPVSTPIAPHFKLSALQ 1090

Query: 1553 SPTTEVEKEYMANVPYASAVGSLMYAMVCTRPDIAHAVSMVSRYMSNPGKQHWLAVKWVL 1374
              +T+ + EYM+ VPY+SAVGSLMYAMVC+ PD++HA+S+VSRYM+NPGK+HW AV+W+ 
Sbjct: 1091 CASTDEDVEYMSRVPYSSAVGSLMYAMVCSWPDLSHAMSLVSRYMANPGKEHWKAVQWIF 1150

Query: 1373 RYLRGTVSKGLVYQRTTRPCIRGFVDADYAGDLDRRRSTTGFSFVLGDGPICWRSMLQSV 1194
            RYLRGT    L + R  +  + G+VD+D+A DLD+RRS TG+ F +G   + W++ LQ V
Sbjct: 1151 RYLRGTADACLKFGRIDKGLV-GYVDSDFAADLDKRRSLTGYVFTIGSCAVSWKATLQPV 1209

Query: 1193 VALSTTEAEYMAVTEAVKEAIWLQNLISELGVRQQVISVSCDNQSAIHLAKNQVHHARTK 1014
            VA STTEAEYMA+ EA KE++WL+ L +EL      I++ CD+QSAI L K+Q+ H RTK
Sbjct: 1210 VAQSTTEAEYMAIAEACKESVWLKGLFAELCGVDSCINLFCDSQSAICLTKDQMFHERTK 1269

Query: 1013 HIDVRYHFIRDEIEKKIVHLEKVDTADNPADMLTKVVGGVKFEHCLNLLHI 861
            HID++YH++RD + +  + + K+   DNPADM+TK +   KFE C +L+ I
Sbjct: 1270 HIDIKYHYVRDIVAQGKLKVCKISIHDNPADMMTKPIPVAKFELCSSLVGI 1320


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score =  813 bits (2101), Expect = 0.0
 Identities = 434/865 (50%), Positives = 553/865 (63%), Gaps = 21/865 (2%)
 Frame = -2

Query: 3434 TKGILDYIHSDVWGPSRVTSQGGKRWFVTFIDDFSRRVWVYTMRQKSEVREIFIKWKALV 3255
            T G+L+YIHSD+WGPS V S  G R++VTFIDDFSR+VWVY ++ K EV   F +WK +V
Sbjct: 587  TNGVLEYIHSDLWGPSPVESHSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTMV 646

Query: 3254 EKQTGRAVKRIRSDNGGEYTEDPLKEFCEQHGIARHFTVKGTPQQNGVAERMNRTLLEKA 3075
            EK+TG+ VK +R+DNG E+      EFC + GI RH TV+ TPQQNGVAERMN+TL+++A
Sbjct: 647  EKRTGKVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQTLVQRA 706

Query: 3074 RCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRIFGCPAY 2895
            RCMR +AGLSK +WAEAVNTA YL+NRSPSTAI  KTP EVW+G P+ Y  L+IFGCPAY
Sbjct: 707  RCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAY 766

Query: 2894 YHITEDKIGKRAMKSIFLGYPEGVKGYRLWCLT--TKKIVVSRDVKFDETVMANVQRFTG 2721
             H+++ K+  RAMK IFLGY  GVKGYRLWC    T K ++SRDV FDE+ M   ++  G
Sbjct: 767  AHVSDGKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTFDESAMFGQRKEFG 826

Query: 2720 WDSPTENSELSRDVDDDQVEYIAPRTSRPIRDPESVSDSDMGQTSPSQGEISTDLEGNGT 2541
                                           D    S +D+G     + E+   +E NG 
Sbjct: 827  -------------------------------DLAGTSKTDLGANQKVEFEVDAPME-NGV 854

Query: 2540 DLDXXXXXXXXXXXXXXEPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXRFGYEEYASC-- 2367
            D                +  ++    DQ D  S+A                   Y  C  
Sbjct: 855  D----------------DTSEEQPVIDQNDSQSIAAHRPRREIRRPM------RYVDCVS 892

Query: 2366 ---------AFIAYDE---EEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVP 2223
                     A    +E   EEP +Y+ A+ S  S +W  +M +E+ SL KN+TWELV +P
Sbjct: 893  ANITNPVAFALAVAEEIGREEPRSYKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLP 952

Query: 2222 KGKKPIGCKWVFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSI 2043
            +G KP+ CKW+F +KDGI       +  +YK+RLVAKG++QKEG+DYNE+FSPVVKH SI
Sbjct: 953  EGVKPVDCKWLFKIKDGISXD----EPPKYKSRLVAKGFSQKEGIDYNEVFSPVVKHKSI 1008

Query: 2042 RILLALVAQYDMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLK 1863
            R+LLA+V+ +++EL+Q+DVKTAFLHG+LEE+IYM QP+GFV + K DHVC LKKSLYGLK
Sbjct: 1009 RVLLAMVSVFNLELDQLDVKTAFLHGNLEEEIYMKQPEGFVDSEKSDHVCFLKKSLYGLK 1068

Query: 1862 QSPRQWYLRFDRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSKXXXXX 1683
            QSPRQWY RFD FMV   + R++YD CVY+K L  GS+IYLLLYVDDMLIAAK++     
Sbjct: 1069 QSPRQWYKRFDAFMVSHEFMRNQYDSCVYFKTLPDGSFIYLLLYVDDMLIAAKNRAEINK 1128

Query: 1682 RKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTPLGAQF----RLTALQSPTTEVEKEYMAN 1515
             K            + + S F M D       LG +            P+T+ E EYM +
Sbjct: 1129 LK------------QLLSSEFEMKDLGAAKKILGMEIWRDRDAXLFTLPSTDEEVEYMKS 1176

Query: 1514 VPYASAVGSLMYAMVCTRPDIAHAVSMVSRYMSNPGKQHWLAVKWVLRYLRGTVSKGLVY 1335
            VPY+S VGSLMYAMVCTRPD+A AVS+VSR+MSNPGK HW AVKW++RYL+G+ S  LVY
Sbjct: 1177 VPYSSVVGSLMYAMVCTRPDLAFAVSVVSRFMSNPGKAHWEAVKWIMRYLKGSSSVCLVY 1236

Query: 1334 -QRTTRPCIRGFVDADYAGDLDRRRSTTGFSFVLGDGPICWRSMLQSVVALSTTEAEYMA 1158
                    + GF D+D+ GDL +RRS T + F L    I WR+ LQ  VALSTTEAEYM+
Sbjct: 1237 GNGDVSSGLVGFTDSDHGGDLMKRRSLTCYIFTLFGCAISWRASLQPTVALSTTEAEYMS 1296

Query: 1157 VTEAVKEAIWLQNLISELGVRQQVISVSCDNQSAIHLAKNQVHHARTKHIDVRYHFIRDE 978
            +TE VKE +WL   +  LG+      + CD+QSA+ LAKN V+H RTKHIDVR +FIRD 
Sbjct: 1297 LTEGVKEGMWLNGFLGSLGLNLSKPVIYCDSQSALCLAKNPVYHERTKHIDVRLNFIRDV 1356

Query: 977  IEKKIVHLEKVDTADNPADMLTKVV 903
            IE+K+  +EKV T  NPADMLTK +
Sbjct: 1357 IEEKLFSIEKVATEVNPADMLTKPI 1381


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  789 bits (2038), Expect = 0.0
 Identities = 419/837 (50%), Positives = 550/837 (65%), Gaps = 38/837 (4%)
 Frame = -2

Query: 3434 TKGILDYIHSDVWGPSRVTSQGGKRWFVTFIDDFSRRVWVYTMRQKSEVREIFIKWKALV 3255
            T+GILDY+HSD+WGP+  TS GG R+ +T +DD+SR+VW Y ++ K +  + F +WK +V
Sbjct: 460  TEGILDYVHSDLWGPAHKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDGFKEWKTMV 519

Query: 3254 EKQTGRAVKRIRSDNGGEYTEDPLKEFCEQHGIARHFTVKGTPQQNGVAERMNRTLLEKA 3075
            E+QT R VK +R+DNG E+     K +C+  GI  H+T   TPQQN VAERMNRT++ KA
Sbjct: 520  ERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVCHYTAPHTPQQNDVAERMNRTIISKA 579

Query: 3074 RCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRIFGCPAY 2895
            RCM SNAGL K +WAEAV+TACYLINRSP  AI  KTP+EVW+G+PT Y +LR+FGC AY
Sbjct: 580  RCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPIEVWSGSPTNYSDLRVFGCTAY 639

Query: 2894 YHITEDKIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMANVQRFTGWD 2715
             H+   K+  RA+K IFLGY  GVKGY+LWC  TKK+V+SR+V F E+V+ +       D
Sbjct: 640  AHVDNGKLEPRAIKCIFLGYASGVKGYKLWCPETKKVVISRNVVFHESVILH-------D 692

Query: 2714 SPTENSEL-SRDVDDDQVEYIAPRTSRPIRDPESV---------SDSDMGQTSPSQGEIS 2565
             P+ N  + S++    QVE++      P ++  ++         SDS +   SP +    
Sbjct: 693  KPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVHQSPKRSIAK 752

Query: 2564 TDLEGNGTDLDXXXXXXXXXXXXXXEPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXRFGY 2385
               + N                   +P +++ EE +    +L                  
Sbjct: 753  DKPKRN------------------IKPPRRYIEEAKIVAYAL------------------ 776

Query: 2384 EEYASCAFIAYDEEEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGKKPI 2205
                S A       EP+TY  A+ S     W  AM +E++SL KN TWELVK+PK KKPI
Sbjct: 777  ----SVAEKIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPI 832

Query: 2204 GCKWVFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRILLAL 2025
             CKW+F  K+G+  S    D  RYKARLVAKGY+Q  G+D+N++FSPVVKH+SIR LL +
Sbjct: 833  RCKWIFKRKEGMSPS----DEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLGI 888

Query: 2024 VAQYDMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSPRQW 1845
            VA +D ELEQM+VKTAFLHG+LEEDIYM QP+GFVV GKE+ VC+LKKSLYGLKQSPRQW
Sbjct: 889  VAMHDYELEQMNVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQW 948

Query: 1844 YLRFDRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSK----------- 1698
            Y RFD FM+ Q+++ S YD CVY K ++ GS IYLLLYVDDMLIAAK K           
Sbjct: 949  YKRFDSFMLSQKFRISNYDSCVYLKVVD-GSVIYLLLYVDDMLIAAKDKSEIEKLKAQLS 1007

Query: 1697 -----------------XXXXXRKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTPLGAQFR 1569
                                  R  G+L +SQ+ Y+EKVL RF M D+KPV+TPL A FR
Sbjct: 1008 SEFEMKDLGAAKKILGMEITRERHSGKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFR 1067

Query: 1568 LTALQSPTTEVEKEYMANVPYASAVGSLMYAMVCTRPDIAHAVSMVSRYMSNPGKQHWLA 1389
            L++   P ++ + EYM+ VPY+SAVGSLMYAMVC RPD++HA+S+V+RYM+NPGK+HW A
Sbjct: 1068 LSSDLCPLSDYDIEYMSRVPYSSAVGSLMYAMVCCRPDLSHALSVVNRYMANPGKEHWKA 1127

Query: 1388 VKWVLRYLRGTVSKGLVYQRTTRPCIRGFVDADYAGDLDRRRSTTGFSFVLGDGPICWRS 1209
            V+W+ RYLRGT S  L ++R +R  + G+VD+D+AGDLDRRRS TG+ F +G   + W++
Sbjct: 1128 VQWIFRYLRGTSSACLQFER-SRDGLVGYVDSDFAGDLDRRRSITGYVFTIGGCAVSWKA 1186

Query: 1208 MLQSVVALSTTEAEYMAVTEAVKEAIWLQNLISELGVRQQVISVSCDNQSAIHLAKN 1038
             LQ+ VALSTTEAEYMA+ EA KEAIWL+ L +EL      I++ CD+QSAI+L K+
Sbjct: 1187 SLQATVALSTTEAEYMAIFEACKEAIWLRGLYTELCGVTSCINIFCDSQSAIYLTKD 1243


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  777 bits (2006), Expect = 0.0
 Identities = 418/899 (46%), Positives = 548/899 (60%), Gaps = 39/899 (4%)
 Frame = -2

Query: 3434 TKGILDYIHSDVWG-PSRVTSQGGKRWFVTFIDDFSRRVWVYTMRQKSEVREIFIKWKAL 3258
            TK  L Y+HSD+WG P    S G  ++F++F+DD+SR+VW+Y +R+K E  E F++WK +
Sbjct: 469  TKEKLAYVHSDLWGSPHNPASLGNSQYFISFVDDYSRKVWIYFLRKKDEAFEKFVEWKKM 528

Query: 3257 VEKQTGRAVKRIRSDNGGEYTEDPLKEFCEQHGIARHFTVKGTPQQNGVAERMNRTLLEK 3078
            VE Q+ R VK++R+DNG EY     ++FC++ GI RH T   TPQQNG+AER+NRT+++K
Sbjct: 529  VENQSDRKVKKLRTDNGLEYCNHYFEKFCKEEGIVRHKTCAYTPQQNGIAERLNRTIMDK 588

Query: 3077 ARCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRIFGCPA 2898
             R M S +G+ K +WAEA +TA YLINRSPSTAI    P E WTG      +LR FGC A
Sbjct: 589  VRSMLSRSGMEKKFWAEAASTAVYLINRSPSTAINFDLPEEKWTGALPDLSSLRKFGCLA 648

Query: 2897 YYHITEDKIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMANVQRFTGW 2718
            Y H  + K+  R+ K IF  YPEGVKGY++W L  KK V+SR+V F E VM     F   
Sbjct: 649  YIHADQGKLNPRSKKGIFTSYPEGVKGYKVWVLEDKKCVISRNVIFREQVM-----FKDL 703

Query: 2717 DSPTENSELSRDVDDDQVEYIAPRTSRPIRDPESVSDSDMGQTSPSQGEISTDLEGNGTD 2538
               ++N+    D++D        R +  + D E        Q + +  E +T        
Sbjct: 704  KGDSQNTISESDLED-------LRVNPDMNDQEFTDQGGATQDNSNPSEATTS------- 749

Query: 2537 LDXXXXXXXXXXXXXXEPIQQHDEEDQQ------DGLSLAEXXXXXXXXXXXXRFGYEEY 2376
                             P    DEE ++      + LS  +               Y E 
Sbjct: 750  ----------HNPVLNSPTHSQDEESEEEDSDAVEDLSTYQLVRDRVRRTIKANPKYNES 799

Query: 2375 ASCAFIAYDEE----EPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGKKP 2208
                F  Y E+    EP +Y+ AL      +W  AM EE+ S+ KN TW+LV  P+  K 
Sbjct: 800  NMVGFAYYSEDDGKPEPKSYQEALLDPDWEKWNAAMKEEMVSMSKNHTWDLVTKPEKVKL 859

Query: 2207 IGCKWVFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRILLA 2028
            IGC+WVF  K GIP     V+  R+ ARLVAKG+ QKEGVDYNEIFSPVVKH SIR LL+
Sbjct: 860  IGCRWVFTRKAGIPG----VEAPRFIARLVAKGFTQKEGVDYNEIFSPVVKHVSIRYLLS 915

Query: 2027 LVAQYDMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSPRQ 1848
            +V  Y+MEL+QMDVKTAFLHG LEE+IYM+QP+GF +    + VC LK+SLYGLKQSPRQ
Sbjct: 916  MVVHYNMELQQMDVKTAFLHGFLEEEIYMAQPEGFEIKRGSNKVCLLKRSLYGLKQSPRQ 975

Query: 1847 WYLRFDRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSK---------- 1698
            W LRFD FM   +Y RS YD CVY+KK N  +YIYLLLYVDDMLIA+ +K          
Sbjct: 976  WNLRFDEFMRGIKYTRSAYDSCVYFKKCNGDTYIYLLLYVDDMLIASANKSEVNELKQLL 1035

Query: 1697 ------------------XXXXXRKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTPLGAQF 1572
                                   R  G LT+SQ  YV+KVL  F M ++KPV+TPLG  F
Sbjct: 1036 SREFEMKDLGDAKKILGMEISRDRDAGLLTLSQEGYVKKVLRSFQMDNAKPVSTPLGIHF 1095

Query: 1571 RLTALQSPTTEVEKEYMANVPYASAVGSLMYAMVCTRPDIAHAVSMVSRYMSNPGKQHWL 1392
            +L A      E + E M  VPYA+ +GS+MY+M+ TRPD+A+++ ++SR+MS P K HW 
Sbjct: 1096 KLKAATDKEYEEQFERMKIVPYANTIGSIMYSMIGTRPDLAYSLGVISRFMSKPLKDHWQ 1155

Query: 1391 AVKWVLRYLRGTVSKGLVYQRTTRPCIRGFVDADYAGDLDRRRSTTGFSFVLGDGPICWR 1212
            AVKWVLRY+RGT  K L +++     +RG+ D+DY  + D RRS TG+ F +G   I W+
Sbjct: 1156 AVKWVLRYMRGTEKKKLCFRKQEDFLLRGYCDSDYGSNFDTRRSITGYVFTVGGNTISWK 1215

Query: 1211 SMLQSVVALSTTEAEYMAVTEAVKEAIWLQNLISELGVRQQVISVSCDNQSAIHLAKNQV 1032
            S LQ VVA+S+TEAEYMA+TEAVKEA+WL+   +ELG  Q  + V  D+QSAI LAKN V
Sbjct: 1216 SKLQKVVAISSTEAEYMALTEAVKEALWLKGFAAELGHSQDYVEVHSDSQSAITLAKNSV 1275

Query: 1031 HHARTKHIDVRYHFIRDEIEKKIVHLEKVDTADNPADMLTKVVGGVKFEHCLNLLHISD 855
            HH RTKHID+R HFIRD I   ++ + K+ T  NPA++ TK V   KFE  LN+L +++
Sbjct: 1276 HHERTKHIDIRLHFIRDIICAGLIKVVKIATECNPANIFTKTVPLAKFEGALNMLRVTE 1334


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
            protein product [Nicotiana tabacum]
          Length = 1328

 Score =  776 bits (2003), Expect = 0.0
 Identities = 421/889 (47%), Positives = 553/889 (62%), Gaps = 32/889 (3%)
 Frame = -2

Query: 3437 RTKGILDYIHSDVWGPSRVTSQGGKRWFVTFIDDFSRRVWVYTMRQKSEVREIFIKWKAL 3258
            R   ILD ++SDV GP  + S GG ++FVTFIDD SR++WVY ++ K +V ++F K+ AL
Sbjct: 476  RKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHAL 535

Query: 3257 VEKQTGRAVKRIRSDNGGEYTEDPLKEFCEQHGIARHFTVKGTPQQNGVAERMNRTLLEK 3078
            VE++TGR +KR+RSDNGGEYT    +E+C  HGI    TV GTPQ NGVAERMNRT++EK
Sbjct: 536  VERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEK 595

Query: 3077 ARCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRIFGCPA 2898
             R M   A L K +W EAV TACYLINRSPS  +  + P  VWT    +Y +L++FGC A
Sbjct: 596  VRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRA 655

Query: 2897 YYHITED---KIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMANVQRF 2727
            + H+ ++   K+  +++  IF+GY +   GYRLW    KK++ SRDV F E+    V+  
Sbjct: 656  FAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRES---EVRTA 712

Query: 2726 TGWDSPTENSELSRDVDDDQVEYIAPRTSRPIRDPESVSDSDMGQTSPSQGEISTDLEGN 2547
                   +N  +   V         P TS      ES +D         QGE   ++   
Sbjct: 713  ADMSEKVKNGIIPNFVT-------IPSTSNNPTSAESTTDE-----VSEQGEQPGEVIEQ 760

Query: 2546 GTDLDXXXXXXXXXXXXXXEPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXRFGYEEYASC 2367
            G  LD               P Q    E+Q   L  +E                  Y S 
Sbjct: 761  GEQLDEGVEEVEH-------PTQG---EEQHQPLRRSERPRVES----------RRYPST 800

Query: 2366 AFIAY-DEEEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGKKPIGCKWV 2190
             ++   D+ EP + +  L      +  +AM EE++SL KN T++LV++PKGK+P+ CKWV
Sbjct: 801  EYVLISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWV 860

Query: 2189 FVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRILLALVAQYD 2010
            F +K       G    VRYKARLV KG+ QK+G+D++EIFSPVVK TSIR +L+L A  D
Sbjct: 861  FKLK-----KDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLD 915

Query: 2009 MELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSPRQWYLRFD 1830
            +E+EQ+DVKTAFLHGDLEE+IYM QP+GF VAGK+  VCKL KSLYGLKQ+PRQWY++FD
Sbjct: 916  LEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFD 975

Query: 1829 RFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSKXXXXXRK--------- 1677
             FM  Q Y ++  D CVY+K+ +  ++I LLLYVDDMLI  K K      K         
Sbjct: 976  SFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDM 1035

Query: 1676 --LG-----------------RLTVSQRDYVEKVLSRFGMSDSKPVTTPLGAQFRLTALQ 1554
              LG                 +L +SQ  Y+E+VL RF M ++KPV+TPL    +L+   
Sbjct: 1036 KDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKM 1095

Query: 1553 SPTTEVEKEYMANVPYASAVGSLMYAMVCTRPDIAHAVSMVSRYMSNPGKQHWLAVKWVL 1374
             PTT  EK  MA VPY+SAVGSLMYAMVCTRPDIAHAV +VSR++ NPGK+HW AVKW+L
Sbjct: 1096 CPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWIL 1155

Query: 1373 RYLRGTVSKGLVYQRTTRPCIRGFVDADYAGDLDRRRSTTGFSFVLGDGPICWRSMLQSV 1194
            RYLRGT    L +  +  P ++G+ DAD AGD+D R+S+TG+ F    G I W+S LQ  
Sbjct: 1156 RYLRGTTGDCLCFGGSD-PILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKC 1214

Query: 1193 VALSTTEAEYMAVTEAVKEAIWLQNLISELGVRQQVISVSCDNQSAIHLAKNQVHHARTK 1014
            VALSTTEAEY+A TE  KE IWL+  + ELG+ Q+   V CD+QSAI L+KN ++HARTK
Sbjct: 1215 VALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTK 1274

Query: 1013 HIDVRYHFIRDEIEKKIVHLEKVDTADNPADMLTKVVGGVKFEHCLNLL 867
            HIDVRYH+IR+ ++ + + + K+ T +NPADMLTKVV   KFE C  L+
Sbjct: 1275 HIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELV 1323


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  761 bits (1964), Expect = 0.0
 Identities = 403/853 (47%), Positives = 532/853 (62%), Gaps = 32/853 (3%)
 Frame = -2

Query: 3437 RTKGILDYIHSDVWGPSRVTSQGGKRWFVTFIDDFSRRVWVYTMRQKSEVREIFIKWKAL 3258
            RTKGILDY+H+D+WGPSR  S GG R+ +T IDD+SR+VW Y ++ K +    F +WK +
Sbjct: 480  RTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVM 539

Query: 3257 VEKQTGRAVKRIRSDNGGEYTEDPLKEFCEQHGIARHFTVKGTPQQNGVAERMNRTLLEK 3078
            +E+QT + VK +R+DN GE+  D   ++C + GI RH T+  TPQQNGVAERMNRT++ K
Sbjct: 540  IERQTEKEVKVLRTDNAGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISK 599

Query: 3077 ARCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRIFGCPA 2898
            ARCM SNA ++K +WAEA NTACYLINRSPS  +  KTP+E+W+G P  Y  LR+FGC A
Sbjct: 600  ARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEIWSGMPADYSQLRVFGCTA 659

Query: 2897 YYHITEDKIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMANVQRFTGW 2718
            Y H+  +K+  RA+K +FLGY  GVKGY+LW   T K  +SR V F+E+VM N       
Sbjct: 660  YAHVDNEKLEPRAIKCLFLGYGLGVKGYKLWNPETNKTFMSRSVVFNESVMFN------- 712

Query: 2717 DSPTENSELSRDV----DDDQVEYIAPRTSRPIRDPESVSDSDMGQTSPSQGEISTDLEG 2550
                    L  DV     D++ +Y++ +        E V D +            T++ G
Sbjct: 713  ------DSLPTDVIPGGSDEEQQYVSVQV-------EHVDDQE------------TEIVG 747

Query: 2549 NGTDLDXXXXXXXXXXXXXXEPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXRFGYEEYAS 2370
            N  +                 P+ Q  +E      +                  Y    S
Sbjct: 748  NDVN----------DTVQHSPPVLQPQDEPIAHRRTKRSCGAPVRLIEECDMVYYA--FS 795

Query: 2369 CAFIAYDEEEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGKKPIGCKWV 2190
            CA    +  EP TY  A+ S    +W  AM EE+QSL KN TWELV +PK KKP+ CKW+
Sbjct: 796  CAEQVENTLEPATYTEAVVSGDREKWISAMQEEMQSLEKNGTWELVHLPKQKKPVRCKWI 855

Query: 2189 FVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRILLALVAQYD 2010
            F  K+G+  S    +  R+KARLVAKG++Q  GVDYN++FSPVVKH+SIR   ++VA +D
Sbjct: 856  FKRKEGLSPS----EPPRFKARLVAKGFSQIVGVDYNDVFSPVVKHSSIRTFFSIVAMHD 911

Query: 2009 MELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSPRQWYLRFD 1830
            +ELEQ+DVKTAFLHG+LEE+IYM QP+GF+V GKED+VCKLK+SLYGLKQSPRQWY RFD
Sbjct: 912  LELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFD 971

Query: 1829 RFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSKXXXXXRK--------- 1677
             FM+   +KRSE+D CVY K +N GS IYLLLYVDD+LIAAKSK      K         
Sbjct: 972  SFMLSHGFKRSEFDSCVYIKFVN-GSPIYLLLYVDDILIAAKSKEQITTLKKQLSSEFDM 1030

Query: 1676 -------------------LGRLTVSQRDYVEKVLSRFGMSDSKPVTTPLGAQFRLTALQ 1554
                                G L +SQ+ Y++KVL  F M D+KPV+TP+   F+L+ALQ
Sbjct: 1031 KDLGAAKKILGMEITRDKNSGLLFLSQQSYIKKVLQCFNMHDAKPVSTPIAPHFKLSALQ 1090

Query: 1553 SPTTEVEKEYMANVPYASAVGSLMYAMVCTRPDIAHAVSMVSRYMSNPGKQHWLAVKWVL 1374
               T+ + EYM+ VPY+SAVGSLMYAMVC+RPD++HA+S+VSRYM+NPGK+HW AV+W+ 
Sbjct: 1091 CANTDEDVEYMSRVPYSSAVGSLMYAMVCSRPDLSHAMSLVSRYMTNPGKEHWKAVQWIF 1150

Query: 1373 RYLRGTVSKGLVYQRTTRPCIRGFVDADYAGDLDRRRSTTGFSFVLGDGPICWRSMLQSV 1194
            RYLRGT    L + RT +  I G+VD+D+A DLD+RRS T                    
Sbjct: 1151 RYLRGTADACLKFGRTDKGLI-GYVDSDFAADLDKRRSLT-------------------- 1189

Query: 1193 VALSTTEAEYMAVTEAVKEAIWLQNLISELGVRQQVISVSCDNQSAIHLAKNQVHHARTK 1014
                    EYMA+ E  KE++WL+ L +EL      I++ CD+QSAI L K+Q+ H RTK
Sbjct: 1190 --------EYMAIAETCKESVWLKGLFAELCGVDSCINLFCDSQSAICLTKDQMFHERTK 1241

Query: 1013 HIDVRYHFIRDEI 975
            HID++YH++RD +
Sbjct: 1242 HIDIKYHYVRDVV 1254


>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  743 bits (1919), Expect = 0.0
 Identities = 405/893 (45%), Positives = 542/893 (60%), Gaps = 35/893 (3%)
 Frame = -2

Query: 3434 TKGILDYIHSDVWGPSRVTSQGGK-RWFVTFIDDFSRRVWVYTMRQKSEVREIFIKWKAL 3258
            TK  L+YIHSD+WG   V    GK ++F++ IDDF+R+VWVY M+ K E  E F++W  L
Sbjct: 493  TKEKLEYIHSDLWGAPFVPLSLGKCQYFMSIIDDFTRKVWVYFMKTKDEAFEKFVEWVNL 552

Query: 3257 VEKQTGRAVKRIRSDNGGEYTEDPLKEFCEQHGIARHFTVKGTPQQNGVAERMNRTLLEK 3078
            VE QT R VK +R+DNG E+       FCE  GI RH T   TPQQNGVAERMNRT++EK
Sbjct: 553  VENQTDRRVKTLRTDNGLEFCNKLFDGFCESIGIHRHRTCAYTPQQNGVAERMNRTIMEK 612

Query: 3077 ARCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRIFGCPA 2898
             R M S++GL K +WAEA +T   LIN++PS+A+  + P + W+G P  Y  LR +GC A
Sbjct: 613  VRSMLSDSGLPKRFWAEATHTTVLLINKTPSSALNFEIPDKKWSGNPPVYSYLRRYGCVA 672

Query: 2897 YYHITEDKIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMANVQRFTGW 2718
            + H  + K+  RA K + +GYP GVKGY++W L  +K VVSR++ F E  +         
Sbjct: 673  FVHTDDGKLEPRAKKGVLIGYPVGVKGYKVWILDERKCVVSRNIIFQENAVYK------- 725

Query: 2717 DSPTENSELSRDVDDDQVEYIAPRTSRPIRDPESVSDSDMGQT--SPSQGEISTDLEGNG 2544
            D       +S + DD    Y+        RD  S  D +M  T  +P    +ST    + 
Sbjct: 726  DLMQRQENVSTEEDDQTGSYLEFDLEAE-RDVISGGDQEMVNTIPAPESPVVSTPTTQDT 784

Query: 2543 TDLDXXXXXXXXXXXXXXEPIQQHDEEDQQDGLS--LAEXXXXXXXXXXXXRFGYEEYAS 2370
             D                      D +  Q  LS  L                  + YA 
Sbjct: 785  ND--------------------DEDSDVNQSPLSYHLVRDRDKREIRAPRRFDDEDYYAE 824

Query: 2369 CAFIAYDEE--EPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGKKPIGCK 2196
              +   D E  EP  YR A   ++  +WK AM EEI S  KN TW +V  P+ ++ IGC+
Sbjct: 825  ALYTTEDGEAVEPENYRKAKLDANFDKWKLAMDEEIDSQEKNNTWTIVTRPENQRIIGCR 884

Query: 2195 WVFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRILLALVAQ 2016
            W+F  K GI      V+  R+KARLVAKGYAQKEG+DY+EIF+PVVKH SIR+LL++VAQ
Sbjct: 885  WIFKYKLGILG----VEEPRFKARLVAKGYAQKEGIDYHEIFAPVVKHVSIRVLLSIVAQ 940

Query: 2015 YDMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSPRQWYLR 1836
             D+ELEQ+DVKTAFLHG+L+E IYMS P+G+    K + VC L K+LYGLKQ+P+QW  +
Sbjct: 941  EDLELEQLDVKTAFLHGELKEKIYMSPPEGYESMFKANEVCLLNKALYGLKQAPKQWNEK 1000

Query: 1835 FDRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSKXXXXX--------- 1683
            FD FM +  + +S YD C Y K L  GS +YLL+YVDD+L+A+K+K              
Sbjct: 1001 FDNFMKEICFVKSAYDSCAYTKVLPDGSVMYLLIYVDDILVASKNKEAITALKANLGMRF 1060

Query: 1682 -------------------RKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTPLGAQFRLTA 1560
                               R LG L +SQ  Y+ K+L  + M+++KP  TPLGA F+  A
Sbjct: 1061 EMKDLGAAKKILGMEIIRDRTLGVLWLSQEGYLNKILETYNMAEAKPAMTPLGAHFKFQA 1120

Query: 1559 LQSPTTEVEKEYMANVPYASAVGSLMYAMVCTRPDIAHAVSMVSRYMSNPGKQHWLAVKW 1380
                    ++++M +VPY+SAVGS+MYAM+ TRPD+A+ V ++SR+MS P K+HWL VKW
Sbjct: 1121 ATEQKLIRDEDFMKSVPYSSAVGSIMYAMLGTRPDLAYPVGIISRFMSQPIKEHWLGVKW 1180

Query: 1379 VLRYLRGTVSKGLVYQRTTRPCIRGFVDADYAGDLDRRRSTTGFSFVLGDGPICWRSMLQ 1200
            VLRY++GT+   L Y++++   I G+ DADYA DLD+RRS TG  F LG   I W+S LQ
Sbjct: 1181 VLRYIKGTLKTRLCYKKSSSFSIVGYCDADYAADLDKRRSITGLVFTLGGNTISWKSGLQ 1240

Query: 1199 SVVALSTTEAEYMAVTEAVKEAIWLQNLISELGVRQQVISVSCDNQSAIHLAKNQVHHAR 1020
             VVA STTE+EYM++TEAVKEAIWL+ L+ + G  Q+ + + CD+QSAI L+KN VHH R
Sbjct: 1241 RVVAQSTTESEYMSLTEAVKEAIWLKGLLKDFGYEQKSVEIFCDSQSAIALSKNNVHHER 1300

Query: 1019 TKHIDVRYHFIRDEIEKKIVHLEKVDTADNPADMLTKVVGGVKFEHCLNLLHI 861
            TKHIDV+YHFIR+ I    V + K+ T  NPAD+ TKV+   KF+  LNLL +
Sbjct: 1301 TKHIDVKYHFIREIISDGTVEVLKISTEKNPADIFTKVLAVSKFQAALNLLRV 1353


>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  743 bits (1917), Expect = 0.0
 Identities = 392/892 (43%), Positives = 545/892 (61%), Gaps = 38/892 (4%)
 Frame = -2

Query: 3422 LDYIHSDVWGPSRVT-SQGGKRWFVTFIDDFSRRVWVYTMRQKSEVREIFIKWKALVEKQ 3246
            L Y+H+D+WG   VT S  GK++F++ IDD +R+VW+Y ++ K E  + F +WK+LVE Q
Sbjct: 496  LSYVHADLWGSPNVTPSISGKQYFLSIIDDKTRKVWLYFLKSKDETFDKFCEWKSLVENQ 555

Query: 3245 TGRAVKRIRSDNGGEYTEDPLKEFCEQHGIARHFTVKGTPQQNGVAERMNRTLLEKARCM 3066
              + VK +R+DNG E+       +C++HGI RH T   TPQQNGVAERMNRT++EK RC+
Sbjct: 556  VNKKVKCLRTDNGLEFCNSRFDSYCKEHGIERHRTCTYTPQQNGVAERMNRTIMEKVRCL 615

Query: 3065 RSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRIFGCPAYYHI 2886
             + +G+ + +WAEA  TA YLINRSP++AI    P E+W      Y +LR FG  AY H 
Sbjct: 616  LNKSGVEEVFWAEAAATAAYLINRSPASAINHNVPEEMWLNRKPGYKHLRKFGSIAYVHQ 675

Query: 2885 TEDKIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMANVQRFTGWDSPT 2706
             + K+  RA+K  FLGYP G KGY++W L  +K V+SR+V F E+V+    +    D+  
Sbjct: 676  DQGKLKPRALKGFFLGYPAGTKGYKVWLLEEEKCVISRNVVFQESVVYRDLKVKEDDTDN 735

Query: 2705 ENSELSRDVDDDQVEYIAPRTSRPI----RDPESVSDSDMGQTSPSQGEISTDLEGNGTD 2538
             N + +   + +Q ++     S  +     D E +++ +    S  + E S         
Sbjct: 736  LNQKETTSSEVEQNKFAEASGSGGVIQLQSDSEPITEGEQSSDSEEEVEYS--------- 786

Query: 2537 LDXXXXXXXXXXXXXXEPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXRFGYEEYASCAFI 2358
                               ++  E  ++ GL+  +               + E +S  F 
Sbjct: 787  -------------------EKTQETPKRTGLTTYKLARDRVRRNINPPTRFTEESSVTFA 827

Query: 2357 AYDEE-----EPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGKKPIGCKW 2193
                E     EP +Y+ A+ S    +W  A  +E+ SL KN TW+LV  PK +K IGC+W
Sbjct: 828  LVVVENCIVQEPQSYQEAMESQDCEKWDMATHDEMDSLMKNGTWDLVDKPKDRKIIGCRW 887

Query: 2192 VFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRILLALVAQY 2013
            +F +K GIP     V+  R+KARLVAKGY Q+EGVDY EIF+PVVKH SIRIL++LV   
Sbjct: 888  LFKLKSGIPG----VEPTRFKARLVAKGYTQREGVDYQEIFAPVVKHVSIRILMSLVVDK 943

Query: 2012 DMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSPRQWYLRF 1833
            D+ELEQMDVKT FLHGDLEE++YM QP+GFV    E+ VC+LKKSLYGLKQSPRQW  RF
Sbjct: 944  DLELEQMDVKTTFLHGDLEEELYMEQPEGFVSDSSENKVCRLKKSLYGLKQSPRQWNKRF 1003

Query: 1832 DRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSKXXXXX---------- 1683
            DRFM  Q++ RSE+D CVY K ++   +IYLLLYVDDMLIA  SK               
Sbjct: 1004 DRFMSSQQFIRSEHDACVYVKHVSEHDFIYLLLYVDDMLIAGASKAEINRVKEQLSTEFE 1063

Query: 1682 ------------------RKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTPLGAQFRLTAL 1557
                              RK G L +SQ  Y+ KVL RF MS +K    P+GA F+L A+
Sbjct: 1064 MKDMGGASRILGIDIYRDRKGGVLKLSQEIYIRKVLDRFNMSGAKMTNAPVGAHFKLAAV 1123

Query: 1556 QSPTTEVEKEYMANVPYASAVGSLMYAMVCTRPDIAHAVSMVSRYMSNPGKQHWLAVKWV 1377
            +     V+ +    VPY+SAVGS+MYAM+ TRPD+A+A+ ++SRYMS PG  HW AVKWV
Sbjct: 1124 REEDECVDTDV---VPYSSAVGSIMYAMLGTRPDLAYAICLISRYMSKPGSMHWEAVKWV 1180

Query: 1376 LRYLRGTVSKGLVYQRTTRPCIRGFVDADYAGDLDRRRSTTGFSFVLGDGPICWRSMLQS 1197
            +RYL+G     LV+ +     + G+ D++YA DLDRRRS +G+ F +G   + W++ LQ 
Sbjct: 1181 MRYLKGAQDLNLVFTKEKDFTVTGYCDSNYAADLDRRRSISGYVFTIGGNTVSWKASLQP 1240

Query: 1196 VVALSTTEAEYMAVTEAVKEAIWLQNLISELGVRQQVISVSCDNQSAIHLAKNQVHHART 1017
            VVA+STTEAEY+A+ EA KEA+W++ L+ ++G++Q  + + CD+QSAI L+KN V+H RT
Sbjct: 1241 VVAMSTTEAEYIALAEAAKEAMWIKGLLQDMGMQQDKVKIWCDSQSAICLSKNSVYHERT 1300

Query: 1016 KHIDVRYHFIRDEIEKKIVHLEKVDTADNPADMLTKVVGGVKFEHCLNLLHI 861
            KHIDVR+++IRD +E   V + K+ T+ NP D LTK +   KF+  L +L +
Sbjct: 1301 KHIDVRFNYIRDVVESGDVDVLKIHTSRNPVDALTKCIPVNKFKSALGVLKL 1352


>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
          Length = 1363

 Score =  735 bits (1897), Expect = 0.0
 Identities = 396/890 (44%), Positives = 537/890 (60%), Gaps = 32/890 (3%)
 Frame = -2

Query: 3434 TKGILDYIHSDVWG-PSRVTSQGGKRWFVTFIDDFSRRVWVYTMRQKSEVREIFIKWKAL 3258
            TK  L+Y+HSD+WG P+   S G  ++F++FIDD++R+VWVY ++ K E  E F+ W +L
Sbjct: 500  TKKKLEYVHSDLWGAPTVPMSLGNCQYFISFIDDYTRKVWVYFLKTKDEAFEKFVSWISL 559

Query: 3257 VEKQTGRAVKRIRSDNGGEYTEDPLKEFCEQHGIARHFTVKGTPQQNGVAERMNRTLLEK 3078
            VE Q+G  VK +R+DNG E+       FCE+ G  RH T   TPQQNGV ERMNRT++EK
Sbjct: 560  VENQSGERVKTLRTDNGLEFCNRMFDGFCEEKGFQRHRTCAYTPQQNGVVERMNRTIMEK 619

Query: 3077 ARCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRIFGCPA 2898
             R M  ++GL K +WAEA +TA  LIN++P +AI  + P + W+G    Y  LR +GC  
Sbjct: 620  VRSMLCDSGLPKRFWAEATHTAVLLINKTPCSAINFEFPDKRWSGKAPIYSYLRRYGCVT 679

Query: 2897 YYHITEDKIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMANVQRFTGW 2718
            + H    K+  RA K + +GYP GVKGY++W +  KK VVSR+V F E  +         
Sbjct: 680  FVHTDGGKLNLRAKKGVLIGYPSGVKGYKVWLIEEKKCVVSRNVSFQENAVYK------- 732

Query: 2717 DSPTENSELSRDVDDDQVEYIAPRTSRPIRDPESVSDSDMGQTSPS-QGEISTDLEGNGT 2541
            D      ++S + DD    YI        +D  S  +    Q +P+ +G +++      T
Sbjct: 733  DLMQRKEQVSCEEDDHAGSYIDLDLEAD-KDNSSGGEQSQAQVTPATRGAVTSTPPRYET 791

Query: 2540 DLDXXXXXXXXXXXXXXEPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXRFGYEEYASCAF 2361
            D                  I++ D         L                  + YA   +
Sbjct: 792  D-----------------DIEETDVHQSPLSYHLVRDRERREIRAPRRFDDEDYYAEALY 834

Query: 2360 IAYDEE--EPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGKKPIGCKWVF 2187
               D +  EP  Y+ A+R  +  +W+ AM+EEI+S  KN TW  V  P+ ++ IG +W++
Sbjct: 835  TTEDGDAVEPADYKEAVRDENWDKWRLAMNEEIESQLKNDTWTTVTRPEKQRIIGSRWIY 894

Query: 2186 VVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRILLALVAQYDM 2007
              K GIP     V+  R+KARLVAKGYAQ+EGVDY+EIF+PVVKH SIRILL++VAQ ++
Sbjct: 895  KYKQGIPG----VEEPRFKARLVAKGYAQREGVDYHEIFAPVVKHVSIRILLSIVAQENL 950

Query: 2006 ELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSPRQWYLRFDR 1827
            ELEQ+DVKTAFLHG+L+E IYM  P+G     KE+ VC L KSLYGLKQ+PRQW  +F+ 
Sbjct: 951  ELEQLDVKTAFLHGELKEKIYMMPPEGCESLFKENEVCLLNKSLYGLKQAPRQWNEKFNH 1010

Query: 1826 FMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSKXXXXX------------ 1683
            +M +  +KRS+YD C Y KKL+  S +YLL YVDDML+AA +                  
Sbjct: 1011 YMTEIGFKRSDYDSCAYTKKLSDDSTMYLLFYVDDMLVAANNMQAIDALKKELSIKFEMK 1070

Query: 1682 ----------------RKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTPLGAQFRLTALQS 1551
                            R+ G L +SQ  Y+ KVL  F M +SKP  TPLGA  ++ +   
Sbjct: 1071 DLGAAKKILGIEIIIDREAGVLWLSQESYLNKVLKTFNMLESKPALTPLGAHLKMKSATE 1130

Query: 1550 PTTEVEKEYMANVPYASAVGSLMYAMVCTRPDIAHAVSMVSRYMSNPGKQHWLAVKWVLR 1371
                 E+EYM +VPY+SAVGS+MYAM+ TRPD+A+ V +VSR+MS P K+HWL VKWVLR
Sbjct: 1131 EKLSTEEEYMNSVPYSSAVGSIMYAMIGTRPDLAYPVGVVSRFMSQPAKEHWLGVKWVLR 1190

Query: 1370 YLRGTVSKGLVYQRTTRPCIRGFVDADYAGDLDRRRSTTGFSFVLGDGPICWRSMLQSVV 1191
            Y++GTV   L Y+R +   I G+ DADYA DLD+RRS TG  F LG   I W+S LQ VV
Sbjct: 1191 YIKGTVDTRLCYKRNSDFSICGYCDADYAADLDKRRSITGLVFTLGGNTISWKSGLQRVV 1250

Query: 1190 ALSTTEAEYMAVTEAVKEAIWLQNLISELGVRQQVISVSCDNQSAIHLAKNQVHHARTKH 1011
            A S+TE EYM++TEAVKEAIWL+ L+ + G  Q+ + + CD+QSAI L+KN VHH RTKH
Sbjct: 1251 AQSSTECEYMSLTEAVKEAIWLKGLLKDFGYEQKNVEIFCDSQSAIALSKNNVHHERTKH 1310

Query: 1010 IDVRYHFIRDEIEKKIVHLEKVDTADNPADMLTKVVGGVKFEHCLNLLHI 861
            IDV++HFIR+ I    V + K+ T  NPAD+ TKV+   KF+  L+ L +
Sbjct: 1311 IDVKFHFIREIIADGKVEVSKISTEKNPADIFTKVLPVNKFQTALDFLRV 1360


>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1333

 Score =  728 bits (1880), Expect = 0.0
 Identities = 400/894 (44%), Positives = 548/894 (61%), Gaps = 36/894 (4%)
 Frame = -2

Query: 3434 TKGILDYIHSDVWG-PSRVTSQGGKRWFVTFIDDFSRRVWVYTMRQKSEVREIFIKWKAL 3258
            T+  L+Y+HSD+WG PS   S G  ++F++FIDD++R+V +Y ++ K E  + F++W  L
Sbjct: 471  TREKLEYVHSDLWGAPSVPFSLGKCQYFISFIDDYTRKVRIYFLKTKDEAFDKFVEWANL 530

Query: 3257 VEKQTGRAVKRIRSDNGGEYTEDPLKEFCEQHGIARHFTVKGTPQQNGVAERMNRTLLEK 3078
            VE QT + +K +R+DNG E+      EFC Q GI  H T   TPQQNGVAERMNRTL+EK
Sbjct: 531  VENQTDKRIKTLRTDNGLEFCNRSFDEFCSQKGILWHRTCAYTPQQNGVAERMNRTLMEK 590

Query: 3077 ARCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRIFGCPA 2898
             R M S++GL K +WAEA +T   LIN++PS+A+  + P + W+G    Y  LR FGC A
Sbjct: 591  VRSMLSDSGLPKKFWAEATHTTAILINKTPSSALNYEVPDKRWSGKSPIYSYLRRFGCIA 650

Query: 2897 YYHITEDKIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMANVQRFTGW 2718
            + H  + K+  RA K I +GYP GVKGY++W L  KK VVSR+V F E            
Sbjct: 651  FVHTDDGKLNPRAKKGILVGYPIGVKGYKIWLLEEKKCVVSRNVIFQENASYK-DMMQSK 709

Query: 2717 DSPTENSELSR----DVDDDQVEYIAPRTSRPIRDPESVSDSDMGQTSPSQGEISTDLEG 2550
            D+  + +E       D+D D  E I      PI + +S         +PS     T  EG
Sbjct: 710  DAEKDENEAPPSSYLDLDLDHEEVITSGGDDPIVEAQS-------PFNPSPATTQTYSEG 762

Query: 2549 NGTDLDXXXXXXXXXXXXXXEPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXRFGYEEYAS 2370
              ++ D               P+      D+      A              F  E+Y +
Sbjct: 763  VNSETDIIQS-----------PLSYQLVRDRDRRTIRAPVR-----------FDDEDYLA 800

Query: 2369 CAFIAYDEE---EPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGKKPIGC 2199
             A    ++    EP  Y  A RS +  +WK AM+EE++S  KN TW +VK P+ +K IG 
Sbjct: 801  EALYTTEDSGEIEPADYSEAKRSMNWNKWKLAMNEEMESQIKNHTWTVVKRPQHQKVIGS 860

Query: 2198 KWVFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRILLALVA 2019
            +W++  K GIP   G+ +G R+KARLVAKGYAQ++G+DY+EIF+PVVKH SIRIL+++VA
Sbjct: 861  RWIYKFKLGIP---GVEEG-RFKARLVAKGYAQRKGIDYHEIFAPVVKHVSIRILMSIVA 916

Query: 2018 QYDMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSPRQWYL 1839
            Q D+ELEQ+DVKTAFLHG+L+E IYM  P+G+    KED VC L KSLYGLKQ+P+QW  
Sbjct: 917  QEDLELEQLDVKTAFLHGELKEKIYMVPPEGYEEMFKEDEVCLLNKSLYGLKQAPKQWNE 976

Query: 1838 RFDRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSK------------- 1698
            +F+ +M +  + RS YD C Y K+L+ GS +YLLLYVDDML+AAK+K             
Sbjct: 977  KFNAYMSEIGFIRSLYDSCAYIKELSDGSRVYLLLYVDDMLVAAKNKEDISQLKEELSQR 1036

Query: 1697 ---------------XXXXXRKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTPLGAQFRLT 1563
                                R+   L +SQ  Y+ K+L  + M++SK V TPLGA  ++ 
Sbjct: 1037 FDMKDLGAAKRILGMEIIRNREENTLWLSQNGYLNKILETYNMAESKHVVTPLGAHLKMR 1096

Query: 1562 ALQSPTTEVEKEYMANVPYASAVGSLMYAMVCTRPDIAHAVSMVSRYMSNPGKQHWLAVK 1383
            A      E +++YM ++PY+SAVGS+MYAM+ TRPD+A+ V ++SRYMS P ++HWL VK
Sbjct: 1097 AATVEKQEQDEDYMKSIPYSSAVGSIMYAMIGTRPDLAYPVGIISRYMSQPAREHWLGVK 1156

Query: 1382 WVLRYLRGTVSKGLVYQRTTRPCIRGFVDADYAGDLDRRRSTTGFSFVLGDGPICWRSML 1203
            WVLRY++G++   L Y+R++   + G+ DAD+A   DRRRS TG  F LG   I W+S  
Sbjct: 1157 WVLRYIKGSLGTKLQYKRSSDFKVVGYCDADHAACKDRRRSITGLVFTLGGSTISWKSGQ 1216

Query: 1202 QSVVALSTTEAEYMAVTEAVKEAIWLQNLISELGVRQQVISVSCDNQSAIHLAKNQVHHA 1023
            Q VVALSTTEAEYM++TEAVKEA+W++ L+ E G  Q+ + + CD+QSAI L+KN VHH 
Sbjct: 1217 QRVVALSTTEAEYMSLTEAVKEAVWMKGLLKEFGYEQKSVEIFCDSQSAIALSKNNVHHE 1276

Query: 1022 RTKHIDVRYHFIRDEIEKKIVHLEKVDTADNPADMLTKVVGGVKFEHCLNLLHI 861
            RTKHIDVRY +IRD I      + K+DT  NPAD+ TK+V   KF+  L LL +
Sbjct: 1277 RTKHIDVRYQYIRDIIANGDGDVVKIDTEKNPADIFTKIVPVNKFQAALTLLQV 1330


>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1166

 Score =  712 bits (1837), Expect = 0.0
 Identities = 376/801 (46%), Positives = 508/801 (63%), Gaps = 7/801 (0%)
 Frame = -2

Query: 3377 SQGGKRWFVTFIDDFSRRVWVYTMRQKSEVREIFIKWKALVEKQTGRAVKRIRSDNGGEY 3198
            S GG R+FV+FIDDFS++VWVY ++ K E    F +WK  VE QTG+ +K +R+DNG E+
Sbjct: 396  SLGGCRYFVSFIDDFSKKVWVYFLKTKDEAYHKFREWKQAVENQTGKKIKYLRTDNGLEF 455

Query: 3197 TEDPLKEFCEQHGIARHFTVKGTPQQNGVAERMNRTLLEKARCMRSNAGLSKFWWAEAVN 3018
                    C++ GI RH T   TPQQNGV+ERMN+T+++  R M +  G+S+ +WAEA +
Sbjct: 456  YNTQFDNLCKEDGIKRHRTCTYTPQQNGVSERMNKTIMDIVRSMLAETGMSQEFWAEATS 515

Query: 3017 TACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRIFGCPAYYHITEDKIGKRAMKSIFLG 2838
            TA YLINR+P++ IG K P EVWTGT     +LR FGC AY H+T+DK   RA+K +F+G
Sbjct: 516  TAVYLINRTPNSFIGFKLPEEVWTGTKPDLSHLRRFGCSAYVHVTQDKTSPRAVKGVFMG 575

Query: 2837 YPEGVKGYRLWCLTTKKIVVSRDVKFDETVMANVQRFTGWDSPTENSELSRDVDDDQVEY 2658
            YP G+KGYR+W     K   SR+V F+ET +         D+ +   E   + + +  + 
Sbjct: 576  YPCGIKGYRVWLPKEGKCTTSRNVVFNETELYK-------DTLSSADERKEEAEKEYKKL 628

Query: 2657 IAPRT----SRPIRDPESVSDSDMGQTSPSQGEISTDLEGNGTDLDXXXXXXXXXXXXXX 2490
               R     S  +    S S  D+  +S   GE S+    +  +L+              
Sbjct: 629  KKARKRVSFSHDLLRGPSTSCCDLDDSSSQGGETSSSSSESSENLEESEMNEE------- 681

Query: 2489 EPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXRFGYEEYASCAFIA---YDEEEPTTYRAA 2319
              +   + E   D   LA             RF  E++ + A       +EEEP +Y  A
Sbjct: 682  --VVGSENEQSLDDYLLARDMKRRSNIRPPSRFEDEDFVAYALATAEDLEEEEPKSYEEA 739

Query: 2318 LRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGKKPIGCKWVFVVKDGIPDSKGIVDGV 2139
            L+SS   +W+ AM EE+ S  K+ TW+L++ P+ +K IGCKW+F +K GIP     V+  
Sbjct: 740  LKSSKRKQWENAMKEEMDSHKKSHTWDLIEKPEKQKLIGCKWIFKLKPGIPG----VEKQ 795

Query: 2138 RYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRILLALVAQYDMELEQMDVKTAFLHGDL 1959
            RYKARLVAKG++Q+EG+DYNE+FS VVKH SIR++L+L+   D ELEQMDVKTAFLHG+L
Sbjct: 796  RYKARLVAKGFSQQEGIDYNEVFSLVVKHVSIRLMLSLMVNMDYELEQMDVKTAFLHGNL 855

Query: 1958 EEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSPRQWYLRFDRFMVKQRYKRSEYDHCV 1779
            EE I MSQP+GF+  G E+ VC L+KSLYGLKQSPR W  RFD FM  Q+++RS YD CV
Sbjct: 856  EERILMSQPEGFIQEGNENKVCLLRKSLYGLKQSPRLWNQRFDAFMKDQKFERSCYDPCV 915

Query: 1778 YYKKLNSGSYIYLLLYVDDMLIAAKSKXXXXXRKLGRLTVSQRDYVEKVLSRFGMSDSKP 1599
            Y +   +   IYLLLYVDDMLIA+           G + + Q +   K+       +S+P
Sbjct: 916  YMRDTQTDKAIYLLLYVDDMLIAS-----------GNMAIIQ-ELKNKL-------NSRP 956

Query: 1598 VTTPLGAQFRLTALQSPTTEVEKEYMANVPYASAVGSLMYAMVCTRPDIAHAVSMVSRYM 1419
            V TP  A F+  +L     + E  +M  +PYA+ VGSLMYAMV +RPD+A  V  +SR+M
Sbjct: 957  VITPTAAHFKFRSLSEEEKKTEAVHMERIPYANVVGSLMYAMVGSRPDLAFVVGFISRFM 1016

Query: 1418 SNPGKQHWLAVKWVLRYLRGTVSKGLVYQRTTRPCIRGFVDADYAGDLDRRRSTTGFSFV 1239
            S+PG++HW AVKWVLRYL+G  ++ L++++ ++ CI GF D+DYA DLDRRRS TG+ F 
Sbjct: 1017 SSPGREHWSAVKWVLRYLKGAYTQNLIFKKDSKFCIEGFSDSDYATDLDRRRSVTGYVFK 1076

Query: 1238 LGDGPICWRSMLQSVVALSTTEAEYMAVTEAVKEAIWLQNLISELGVRQQVISVSCDNQS 1059
            +G   I W+S LQSVVALSTTEAEYMA+TEAVKEAIWL+ L SELG +Q  + V CD+QS
Sbjct: 1077 VGGNTISWKSSLQSVVALSTTEAEYMALTEAVKEAIWLKGLCSELGFKQDNVMVHCDSQS 1136

Query: 1058 AIHLAKNQVHHARTKHIDVRY 996
            A+ LAKN VHH RT+HID ++
Sbjct: 1137 ALALAKNSVHHERTEHIDTKF 1157


>gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1137

 Score =  704 bits (1816), Expect = 0.0
 Identities = 390/864 (45%), Positives = 516/864 (59%), Gaps = 36/864 (4%)
 Frame = -2

Query: 3341 DDFSRRVWVYTMRQKSEVREIFIKWKALVEKQTGRAVKRIRSDNGGEYTEDPLKEFCEQH 3162
            +D+SR+VWVY ++ K E    F +WK +VE Q+ R +K +R+DNG E+      E C++ 
Sbjct: 319  NDWSRKVWVYFLKTKDEAFASFTEWKKMVETQSERKLKHLRTDNGLEFCNHKFDEVCKKE 378

Query: 3161 GIARHFTVKGTPQQNGVAERMNRTLLEKARCMRSNAGLSKFWWAEAVNTACYLINRSPST 2982
            GI RH T   TPQQNGVAER+NRT++ K R M S +GL K +WA+A +TA YLINRSPS+
Sbjct: 379  GIVRHRTCTYTPQQNGVAERLNRTIMNKVRSMLSESGLDKKFWAKAASTAVYLINRSPSS 438

Query: 2981 AIGLKTPMEVWTGTPTTYDNLRIFGCPAYYHITEDKIGKRAMKSIFLGYPEGVKGYRLWC 2802
            +I  K P E+WT     +  L+ FGC  Y +  E K+  RA K +F+GYP GVKG+R+W 
Sbjct: 439  SIENKIPEELWTSAVPNFSGLKRFGCVVYVYSQEGKLDPRAKKGVFVGYPNGVKGFRVWM 498

Query: 2801 LTTKKIVVSRDVKFDETVMANV---QRFTG--WDSPTENSELSRDVDDDQVEYIAPRTSR 2637
            +  ++  +SR+V F E VM      Q  +G  +D P   + +         E    R   
Sbjct: 499  IEEERCSISRNVVFREDVMYKDILNQSTSGMSFDFPLATNRIP------SFECAGNRKED 552

Query: 2636 PIRDPESVSDSDMGQTSPSQGEISTDLEGNGTDLDXXXXXXXXXXXXXXEPIQQHDEEDQ 2457
             I     VSD D  Q+S  +  IST   G  +                  P +  D E  
Sbjct: 553  EISVQGGVSDDDTKQSS-EESPISTGSSGQNSGQRTYQIARDKPKRQTKIPDKLRDYELN 611

Query: 2456 QDGLSLAEXXXXXXXXXXXXRFGYEEYASCAFIAYDE---EEPTTYRAALRSSHSAEWKQ 2286
            ++ L                    +E A  A++  ++    EP  Y+ AL+ S    W +
Sbjct: 612  EEVL--------------------DEIAGYAYMITEDGGNPEPNDYQKALQDSDYKMWLK 651

Query: 2285 AMSEEIQSLHKNKTWELVKVPKGKKPIGCKWVFVVKDGIPDSKGIVDGVRYKARLVAKGY 2106
            A+ EEI+SL KN TW LV   + +KPIGCKWVF  K GI      V+  R+KARLV KGY
Sbjct: 652  AVDEEIESLLKNNTWVLVNRDQFQKPIGCKWVFKRKSGIVG----VEKPRFKARLVVKGY 707

Query: 2105 AQKEGVDYNEIFSPVVKHTSIRILLALVAQYDMELEQMDVKTAFLHGDLEEDIYMSQPDG 1926
            +QKEG+DY EIFSPVVKH SIR+LL++V   DMEL+QMDVKTAFLHG L+E IY+ QP+G
Sbjct: 708  SQKEGIDYQEIFSPVVKHVSIRLLLSMVTHCDMELQQMDVKTAFLHGYLDETIYIEQPEG 767

Query: 1925 FVVAGKEDHVCKLKKSLYGLKQSPRQWYLRFDRFMVKQRYKRSEYDHCVYYKKLNSGSYI 1746
            +V     D VC LK+SLYGL+QSPRQW  RF+ FM K  Y+RS+YD CVY+K+L SG YI
Sbjct: 768  YVHKRYPDKVCLLKRSLYGLRQSPRQWNNRFNEFMQKIGYERSKYDSCVYFKELQSGEYI 827

Query: 1745 YLLLYVDDMLIAAKSK----------------------------XXXXXRKLGRLTVSQR 1650
            YLLLYVDD+LIA++ K                                 RK G +++SQ 
Sbjct: 828  YLLLYVDDILIASRDKRTVCDLKALLNSEFEMKDLGDAKKILGMEIVRDRKAGTMSISQE 887

Query: 1649 DYVEKVLSRFGMSDSKPVTTPLGAQFRLTALQSPTTEVEKEYMANVPYASAVGSLMYAMV 1470
             Y+ KVL  FGM  +KPV TP+GA F+L          + E M  VPY SAVGSLMY+M+
Sbjct: 888  GYLLKVLGNFGMDQAKPVFTPMGAHFKLKPATDEEVMRQSEVMRAVPYQSAVGSLMYSMI 947

Query: 1469 CTRPDIAHAVSMVSRYMSNPGKQHWLAVKWVLRYLRGTVSKGLVYQRTTRPCIRGFVDAD 1290
             TRPD+AH+V +V R+MS P K+HW AVKW+LRY+RG++ + L Y+      + G+ D+D
Sbjct: 948  GTRPDLAHSVGLVCRFMSKPLKEHWQAVKWILRYIRGSIDRKLCYKNEGELILEGYCDSD 1007

Query: 1289 YAGDLDRRRSTTGFSFVLGDGPICWRSMLQSVVALSTTEAEYMAVTEAVKEAIWLQNLIS 1110
            YA D + RRST+G                  VVALS+TEAEYMA+T+  KEAIWL+  +S
Sbjct: 1008 YAADKEGRRSTSGV----------------KVVALSSTEAEYMALTDGAKEAIWLKGHVS 1051

Query: 1109 ELGVRQQVISVSCDNQSAIHLAKNQVHHARTKHIDVRYHFIRDEIEKKIVHLEKVDTADN 930
            ELG  Q+ +++ CD+QSAI LAKN V+H RTKHIDV+YHFIRD +    V + K+DT DN
Sbjct: 1052 ELGFVQKTVNIHCDSQSAIALAKNAVYHERTKHIDVKYHFIRDLVNNGEVQVLKIDTEDN 1111

Query: 929  PADMLTKVVGGVKFEHCLNLLHIS 858
            PAD+ TKV+   KF+  L LL +S
Sbjct: 1112 PADIFTKVLPVSKFQDALELLRVS 1135


>gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]
          Length = 1556

 Score =  694 bits (1791), Expect = 0.0
 Identities = 389/882 (44%), Positives = 521/882 (59%), Gaps = 30/882 (3%)
 Frame = -2

Query: 3425 ILDYIHSDVWGPSRVTSQGGKRWFVTFIDDFSRRVWVYTMRQKSEVREIFIKWKALVEKQ 3246
            +L+ +HSDV GP +V S  G  +FVTFIDD SR++WVY ++ K +V   F ++  LVE+Q
Sbjct: 473  LLELVHSDVCGPLKVKSFTGTIYFVTFIDDCSRKLWVYALKTKDQVLAKFKEFHVLVERQ 532

Query: 3245 TGRAVKRIRSDNGGEYTEDPLKEFCEQHGIARHFTVKGTPQQNGVAERMNRTLLEKARCM 3066
            +G+ +K IR+DNGGEY   P   +C+QHGI    T   TPQ NG+AERMNRTL+E+ RCM
Sbjct: 533  SGKKLKCIRTDNGGEYC-GPFDAYCKQHGIRHEKTPPKTPQLNGLAERMNRTLIERVRCM 591

Query: 3065 RSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRIFGCPAYYHI 2886
             S A L K +W EA+ TA ++IN SP+ A+  + P +VW G    YD+LR+FGC AY H 
Sbjct: 592  LSKAKLPKHFWGEALYTAVHVINLSPAIALNAEVPDKVWFGKNVKYDHLRVFGCKAYVH- 650

Query: 2885 TEDKIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMANVQRFTGWDSPT 2706
                                           KK V SRDVKF E            D   
Sbjct: 651  -------------------------------KKAVRSRDVKFME------------DQTI 667

Query: 2705 ENSELSRDVDDDQVEYIAPRTSRPIRDPESVSDSDMGQTSPSQGEISTDLEGNGTDLDXX 2526
            E        D D+ E I   T   + + + V   +         ++     G+  D+   
Sbjct: 668  E--------DIDKTEKITSETDNRLSNVDPVLSDEQ------HDDVDDQQLGDAFDV--- 710

Query: 2525 XXXXXXXXXXXXEPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXRFGY--EEYASCAFIAY 2352
                         PI   D+ +++ G+S  E               Y  ++Y +      
Sbjct: 711  -------------PI---DDSEEEHGMSQDEDLGDAPEPPQVQIRRYPSDDYVTLT---- 750

Query: 2351 DEEEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGKKPIGCKWVFVVKDG 2172
            DE EP  Y  A+ S    +W  AM +E++SLH N T++LVK+PK KK +  +W++ VK  
Sbjct: 751  DEGEPECYLEAMESEEKKKWLDAMQDEMKSLHDNHTFDLVKLPKDKKALENRWIYRVKQE 810

Query: 2171 IPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRILLALVAQYDMELEQM 1992
               +       RYKARLV KG+ Q++G+D+NEIFSPVVK +SIRI+L+L A  D+E+EQM
Sbjct: 811  SNSTSP-----RYKARLVVKGFRQRKGIDFNEIFSPVVKMSSIRIVLSLAATLDLEVEQM 865

Query: 1991 DVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSPRQWYLRFDRFMVKQ 1812
            DVKTAFLHGDLEE+IYM QPDGF+V GKEDHVC+L+KSLYGLKQ+PRQWY +F+  M +Q
Sbjct: 866  DVKTAFLHGDLEEEIYMKQPDGFLVEGKEDHVCRLRKSLYGLKQAPRQWYKKFESVMCEQ 925

Query: 1811 RYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSKXXXXXRK--------------- 1677
             YK++  DHCV+ KK  +  +I LLLYVDD+LI  K        K               
Sbjct: 926  GYKKTTSDHCVFVKKFANDDFIILLLYVDDILIVGKDISMINRLKKQLSESFAMKDMGAA 985

Query: 1676 ---LG----------RLTVSQRDYVEKVLSRFGMSDSKPVTTPLGAQFRLTALQSPTTEV 1536
               LG          +L +SQ +YV++VL RF M ++K V+TPL   F+L+  QSP+ E 
Sbjct: 986  KQILGIRIMRDRQEKKLWLSQENYVKRVLQRFQMENAKVVSTPLATHFKLSTKQSPSYEY 1045

Query: 1535 EKEYMANVPYASAVGSLMYAMVCTRPDIAHAVSMVSRYMSNPGKQHWLAVKWVLRYLRGT 1356
            EK  M  +PYASAVGSLMYAMVCTRPDIAH V  VSR+MSNPG++HW AVKW+LRYLRGT
Sbjct: 1046 EKSDMQRIPYASAVGSLMYAMVCTRPDIAHVVGTVSRFMSNPGREHWNAVKWILRYLRGT 1105

Query: 1355 VSKGLVYQRTTRPCIRGFVDADYAGDLDRRRSTTGFSFVLGDGPICWRSMLQSVVALSTT 1176
                L +    +P + G+ D+D  GD+D RRST+G+      G + W+S LQ  VALSTT
Sbjct: 1106 TCLRLCFGGD-KPTLVGYTDSDMGGDIDSRRSTSGYVIKFAGGAVAWQSRLQKCVALSTT 1164

Query: 1175 EAEYMAVTEAVKEAIWLQNLISELGVRQQVISVSCDNQSAIHLAKNQVHHARTKHIDVRY 996
            EAE++A+TEA KE +W++ L+ EL   Q    + CD+QSAI+L KN   H+R+KHIDVRY
Sbjct: 1165 EAEFIAITEACKELLWVKKLLQELSFVQDKYLLFCDSQSAIYLGKNSTFHSRSKHIDVRY 1224

Query: 995  HFIRDEIEKKIVHLEKVDTADNPADMLTKVVGGVKFEHCLNL 870
            H+IRD +E +++ L KV T DN ADM+TK +   K E C  +
Sbjct: 1225 HWIRDALEARLLELAKVHTDDNCADMMTKSLPRSKSETCCKI 1266


>emb|CAN66323.1| hypothetical protein VITISV_007384 [Vitis vinifera]
          Length = 1317

 Score =  669 bits (1725), Expect = 0.0
 Identities = 362/875 (41%), Positives = 536/875 (61%), Gaps = 19/875 (2%)
 Frame = -2

Query: 3437 RTKGILDYIHSDVWGPSRVTSQGGKRWFVTFIDDFSRRVWVYTMRQKSEVREIFIKWKAL 3258
            R  G+ D ++SDV GP +  + GG  +FVTFIDD SR++WVYT++ K +V ++F ++ AL
Sbjct: 425  RKPGMFDLVYSDVCGPMKTKTLGGSLYFVTFIDDHSRKIWVYTLKTKDQVLDVFKQFHAL 484

Query: 3257 VEKQTGRAVKRIRSDNGGEYTEDPLKEFCEQHGIARHFTVKGTPQQNGVAERMNRTLLEK 3078
            VE+Q+G  +K IR+DNGGEY+  P  E+C QH I    T   TPQ NG+AERMNRTL+E+
Sbjct: 485  VERQSGEKLKCIRTDNGGEYS-GPFDEYCRQHDIRHQKTPPKTPQLNGLAERMNRTLVER 543

Query: 3077 ARCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRIFGCPA 2898
             RC+ S + L + +W EA+NT  +++N +P   +       +W+    +YD+LR+FGC A
Sbjct: 544  VRCLLSQSQLPRSFWDEALNTVVHVLNLTPCVPLEFDVSDRIWSNNEISYDHLRVFGCKA 603

Query: 2897 YYHITEDKIGKRAMKS---IFLGYPEGVKGYRLWCLTTKKIVVSRDVKF-DETVMANVQR 2730
            + HI +D+  K  +K+   +F+GY +   GYR +    KK+V SRDV F ++  + ++++
Sbjct: 604  FVHIPKDERSKLDVKTRPCVFIGYGQDELGYRFYDPVQKKLVRSRDVVFMEDHTIQDIEK 663

Query: 2729 FTGWDS------------PTEN--SELSRDVDDDQVEYIAPRTSRPIRDPESVSDSDMGQ 2592
                +S            P +N  +++  +  DDQ +     T   + D       DMG 
Sbjct: 664  TNPMESQHSGDLIDLDLAPLKNLPTQVEDEAHDDQHDMGDVETPTQVEDETHDDQHDMGD 723

Query: 2591 TS-PSQGEISTDLEGNGTDLDXXXXXXXXXXXXXXEPIQQHDEEDQQDGLSLAEXXXXXX 2415
               P+Q E+  D+                           H++    +  S         
Sbjct: 724  VEIPTQVEVDDDV---------------------------HEQSPAAEAPSDIPLRRFTR 756

Query: 2414 XXXXXXRFGYEEYASCAFIAYDEEEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWEL 2235
                  R+  ++Y     +  D EEP +Y  A++  +  +W   M +E++SLH+N ++EL
Sbjct: 757  DRHPSTRYSVDDYV----LLTDGEEPESYVEAMKDENKMKWVDXMRDEMESLHENHSFEL 812

Query: 2234 VKVPKGKKPIGCKWVFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVK 2055
            VK+PKGK+ +  +WV+ VK     S+      RYKARLV KG+ QK+G+D++EIFSPVVK
Sbjct: 813  VKLPKGKRXLKNRWVYRVKQEEHTSQP-----RYKARLVVKGFNQKKGIDFDEIFSPVVK 867

Query: 2054 HTSIRILLALVAQYDMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSL 1875
             +SIR++L L A  D+E++QMDVKTAFLHGDL+++IYM QP+GFV+ GKED+VCKLKKSL
Sbjct: 868  MSSIRVVLGLAASLDLEIQQMDVKTAFLHGDLDKEIYMEQPEGFVLKGKEDYVCKLKKSL 927

Query: 1874 YGLKQSPRQWYLRFDRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSKX 1695
            YGLKQ+PRQWY +F+  M +     S  D+    KK  S S+    L     ++  + + 
Sbjct: 928  YGLKQAPRQWYKKFESVMGE---NVSRIDN---LKKQLSKSFAMKDLGPVKRILGIRIER 981

Query: 1694 XXXXRKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTPLGAQFRLTALQSPTTEVEKEYMAN 1515
                +KL  L   Q+ Y+EKVL++F MS +K V++PL + F+L++  +P+T+ EKE M  
Sbjct: 982  DRASKKLCML---QKQYIEKVLAKFNMSKAKVVSSPLASHFKLSSRHNPSTDKEKEDMRR 1038

Query: 1514 VPYASAVGSLMYAMVCTRPDIAHAVSMVSRYMSNPGKQHWLAVKWVLRYLRGTVSKGLVY 1335
            V YAS VGSL+Y MVC RPDIA+AV +VSR++SNPG+ HW AVKW++RYLRG +SK  + 
Sbjct: 1039 VLYASVVGSLIYVMVCIRPDIAYAVGVVSRFLSNPGRHHWEAVKWIMRYLRG-ISKLKLT 1097

Query: 1334 QRTTRPCIRGFVDADYAGDLDRRRSTTGFSFVLGDGPICWRSMLQSVVALSTTEAEYMAV 1155
              + +P + G+ D+D AGD+D RRST+ +      G + W+S LQ  VALSTTEAEY+A 
Sbjct: 1098 FGSGKPILVGYTDSDMAGDVDNRRSTSSYLMTFSGGAVSWQSRLQKCVALSTTEAEYIAA 1157

Query: 1154 TEAVKEAIWLQNLISELGVRQQVISVSCDNQSAIHLAKNQVHHARTKHIDVRYHFIRDEI 975
             EA KE +W++  + EL  +QQ   V CDNQ+AIHL+KN  +HAR+KHIDVRYH++RD +
Sbjct: 1158 AEACKELLWMKCFMQELXFKQQRYVVYCDNQNAIHLSKNSXYHARSKHIDVRYHWMRDAL 1217

Query: 974  EKKIVHLEKVDTADNPADMLTKVVGGVKFEHCLNL 870
               +  +EK+ T +N +DMLTK +   K   C ++
Sbjct: 1218 NNNLFEIEKIHTDNNGSDMLTKTLPREKLGVCCSI 1252