BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia22_contig00003995
         (3664 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...  1146   0.0  
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...  1134   0.0  
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1130   0.0  
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...  1125   0.0  
emb|CBI21038.3| unnamed protein product [Vitis vinifera]             1122   0.0  
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...  1122   0.0  
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1120   0.0  
ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prun...  1114   0.0  
ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma ca...  1096   0.0  
gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]      1095   0.0  
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu...  1088   0.0  
ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1084   0.0  
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...  1079   0.0  
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]    1075   0.0  
ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1071   0.0  
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]  1071   0.0  
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1071   0.0  
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    1069   0.0  
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1059   0.0  
gb|AGU69384.1| RNA-dependendent RNA polymerase 6-like protein [L...  1057   0.0  

>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1200

 Score = 1146 bits (2964), Expect = 0.0
 Identities = 535/685 (78%), Positives = 607/685 (88%)
 Frame = +2

Query: 1610 SNSFPQKTSVFKRVKAILTDGFHLCGRKYSFLAFSSNQLRDRSAWFFAENDKVSVLDIKS 1789
            SNSFPQKT +FKRV++ILT+GF+LCGR+YSFLAFS+NQLRD+SAWFF+E   +SVLD+KS
Sbjct: 481  SNSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKS 540

Query: 1790 WMGKFTNRNIAKCAARMGQCFSSTYATVEVSALEVDEELPDINRNGYVFSDGIGMITLDL 1969
            WMGKFTNRNIAKCAARMGQCFSSTYAT+EV   EV+ +LPDI RNGYVFSDGIG+IT DL
Sbjct: 541  WMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDL 600

Query: 1970 AMEVAEKLKLDVNPPSAYQIRYAGCKGVVACWPGKDDGIRLSLRHSMNKFQSKHTTLEIC 2149
            A EVAEKLKLD++PP AYQIRYAGCKGVVACWPGK DG+RLSLR SMNKFQS HTTLEIC
Sbjct: 601  AREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEIC 660

Query: 2150 SWTRFQPGFLNRQIITLLSTLNVPDEIFWKMQASMVSKLNQMLVDTDVAFDVITASCAEQ 2329
            SWTRFQPGFLNRQIITLLSTLNVPD +FWKMQ +MVSKLNQM V++DVAFDV+TASCA+Q
Sbjct: 661  SWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQ 720

Query: 2330 GNTGAIMLSAGFKPQTEPHLRGMLTCIRAAQLWGLREKARIFVHSGRWLMGCLDELGVLE 2509
            GN  AIMLSAGFKP  EPHLRGMLTC+RAAQLW LREK RIFV SGRWLMGCLDELG+LE
Sbjct: 721  GNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLE 780

Query: 2510 HGQCFIQVSTPSLENCFLKHGSRFSETKKNVEVIKGIVAIAKNPCLHPGDIRILEAVDAP 2689
             GQCFIQVS  SLE CF+KHG++FSE +KN++VIKG V IAKNPCLHPGD+R+LEAVD P
Sbjct: 781  QGQCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVP 840

Query: 2690 GLHHLVDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLVPPGKKSWMPMLYDPVEAK 2869
            GLHHL DCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENL+PP K+SW+PM YD  EAK
Sbjct: 841  GLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAK 900

Query: 2870 LLTRQVNQVDIIDFFAKNMVNESLGKICNAHVVHADHSEYGAQDEDCLKLAELAATAVDF 3049
            LL R VN  DII+FFAKNMVN++LG ICNAHVVHAD SEYGA D++CL LAELAATAVDF
Sbjct: 901  LLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATAVDF 960

Query: 3050 PKTGKLVTMPPHLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDEDLVTSAEQSFV 3229
            PKTGK+V+MPP+LKPK+YPDFMGKEE+QSYKS KILGRLYR IKDAYDED+  S+E + V
Sbjct: 961  PKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNLV 1020

Query: 3230 PGDIPYDKDLEVSGSADFVKVAWDCKCSYAGQLNALMGQYKVSREEEIVTGHVWSMPKYN 3409
            PGDIPYD DLEV G++D++  AWD KCSY GQLN L+ QYKV REEE+VTGH+WSMPKY+
Sbjct: 1021 PGDIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPKYS 1080

Query: 3410 SNKQGDLMERLKHAYNALRKEFRLLFEKMDSNLGENSVDEKNRIYEQKASAWYQVTYHPE 3589
            S KQG+L +RLKH+YN+L+KEFR +FEKMD    +    EKN++YEQKASAWYQV YHP 
Sbjct: 1081 SRKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHPH 1140

Query: 3590 WVKKSLNMKEPDGDGEKIILSFAWI 3664
            WVKKSL +++PDG G  ++LSFAWI
Sbjct: 1141 WVKKSLELQDPDGAGTSVMLSFAWI 1165



 Score =  639 bits (1648), Expect = e-180
 Identities = 310/457 (67%), Positives = 372/457 (81%), Gaps = 6/457 (1%)
 Frame = +3

Query: 219  MESEGR-EEDLVVQVSLGGFDCYVTAKVLTDYLEDAIGLVWRCRLKTSSTPPESYPNFEI 395
            ME+EG  +E +V QVS+GGFD +VTAK L +YL+ AIGLVWRCRLKTS TPPESYPNFEI
Sbjct: 1    MEAEGSAKETVVTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEI 60

Query: 396  VDVNKIQRTDDYKKVEPHAFVHFVSHASVTAAQDAAGRCELFFNDKPLKASFG--NPFLI 569
             D+ KI+RT+DY++V PHAFVHF    S T A +A+GRCELF N+K LK S G  NPF +
Sbjct: 61   TDITKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTL 120

Query: 570  NQKTRTTTPYNFKDVYVEIGGLVSRGEYFVAWKGPATGVDFVVDPFDGTCKFLFTKDTVF 749
            NQ+ RTTTP+   DV  EIG LVSR E+FV W+GP +GVDF+VDPFDGTCKF F+++T F
Sbjct: 121  NQRRRTTTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAF 180

Query: 750  SFKGKGKHAVIKCDFKVEFLVRDINEVKEYKDMLSFVILLQLASSPVLYYRTADDDIEES 929
            S K   +HAVIKCDFKVEFLVRDINE+ +Y +    V+LLQLAS+P ++YRTADDDIE  
Sbjct: 181  SLKSTSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAW 240

Query: 930  ATFDLMDDEDPWIRTTDFTPSGAIGRCNTYKISIPARHGRRLKEAMDYLRRQRVPV---G 1100
              FDL+DD+DPWIRTTDFT SGAIGRC++Y++SIP RHG +L++A+ YL+ +RV V    
Sbjct: 241  VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEE 300

Query: 1101 KLWQQLMIWNEPDFGMPVSDPFFCIQHETGITFDVLFLVNAVMHKGIINQHQLSERFYNL 1280
               +++ I +EPDFGMP+SDPFFCI H+ GI F+VLFLVNAVMHKGI NQHQLS  F++L
Sbjct: 301  NHRRRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDL 360

Query: 1281 LRSQPGEVNIAALKHICSYRRPVFDAYDRLKLVQEWLLKNPKLRKIPKQLDDIVEVRRLA 1460
            LR+Q  EVN++ALKHIC+YRRPVF+AY RLK VQEWLLKNP L K PKQL D+VE+RRL 
Sbjct: 361  LRNQHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLV 420

Query: 1461 ITPTKAYCLPPEVELSNRVLRNYKEFADRFLRVTFMD 1571
            ITPTKAYCLPPEVELSNRVLR YK+ ADRFLRVTFMD
Sbjct: 421  ITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMD 457


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score = 1134 bits (2933), Expect = 0.0
 Identities = 547/691 (79%), Positives = 601/691 (86%), Gaps = 6/691 (0%)
 Frame = +2

Query: 1610 SNSFPQKTSVFKRVKAILTDGFHLCGRKYSFLAFSSNQLRDRSAWFFAENDKVSVLDIKS 1789
            SNSF QKT +FKRVK+ILTDGF+LCGRKYSFLAFSSNQLRDRSAWFFAE+ K SV  I++
Sbjct: 478  SNSFSQKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRN 537

Query: 1790 WMGKFTNRNIAKCAARMGQCFSSTYATVEVSALEVDEELPDINRNGYVFSDGIGMITLDL 1969
            WMGKFTNRNIAKCAARMGQCFSSTYATVEV + E   +LPDI RN Y+FSDGIGMIT DL
Sbjct: 538  WMGKFTNRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDL 597

Query: 1970 AMEVAEKLKLDVNPPSAYQIRYAGCKGVVACWPGKDDGIRLSLRHSMNKFQSKHTTLEIC 2149
            A EVAEKLKL+VNPP AYQIRYAGCKGVVACWP   DGIRLSLR SMNKF S HTTLEIC
Sbjct: 598  AKEVAEKLKLEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEIC 657

Query: 2150 SWTRFQPGFLNRQIITLLSTLNVPDEIFWKMQASMVSKLNQMLVDTDVAFDVITASCAEQ 2329
            SWTRFQPGFLNRQIITLLSTL+VPDEIFWKMQ  MVSKLNQM +D DVAFDV+TASCAEQ
Sbjct: 658  SWTRFQPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQ 717

Query: 2330 GNTGAIMLSAGFKPQTEPHLRGMLTCIRAAQLWGLREKARIFVHSGRWLMGCLDELGVLE 2509
            GNT AIMLSAGF P+TEPHL GMLTCIRAAQLWGLREK RIFV SGRWLMGCLDELGVLE
Sbjct: 718  GNTAAIMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLE 777

Query: 2510 HGQCFIQVSTPSLENCFLKHGSRFSETKKNVEVIKGIVAIAKNPCLHPGDIRILEAVDAP 2689
            HGQCFIQVS PSLE+CF KHGSRFSE+KK ++V+KG V +AKNPCLHPGDIRILEAVDAP
Sbjct: 778  HGQCFIQVSNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAP 837

Query: 2690 GLHHLVDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLVPPGKKSWMPMLYDPVEAK 2869
             LHHL DCLVFPQKG+RPHTNEASGSDLDGDLYFVTWDENL+PP K+SW+PM YD  EAK
Sbjct: 838  ELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAK 897

Query: 2870 LLTRQVNQVDIIDFFAKNMVNESLGKICNAHVVHADHSEYGAQDEDCLKLAELAATAVDF 3049
             L R VN  DIIDFFAKNMVNE+LG ICNAHVVHAD SEYGA DE+C+KLAELAATAVDF
Sbjct: 898  QLNRPVNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDF 957

Query: 3050 PKTGKLVTMPPHLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAY------DEDLVTS 3211
            PKTGKLVTMPPHLKPKLYPDFMGKE++QSY SNKILGRLYR +KD Y      D+D  TS
Sbjct: 958  PKTGKLVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDAATS 1017

Query: 3212 AEQSFVPGDIPYDKDLEVSGSADFVKVAWDCKCSYAGQLNALMGQYKVSREEEIVTGHVW 3391
            +E + V GDIPYDKDLEVSGS+D++  AWD KCSY GQL  L+ QYKV REEE+VTGH+W
Sbjct: 1018 SELNLVRGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIW 1077

Query: 3392 SMPKYNSNKQGDLMERLKHAYNALRKEFRLLFEKMDSNLGENSVDEKNRIYEQKASAWYQ 3571
            SMPK NS KQG+L ERLK +Y++L+KEFR +FEKMDS+  + + DEKN +YEQKASAWYQ
Sbjct: 1078 SMPKCNSRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQ 1137

Query: 3572 VTYHPEWVKKSLNMKEPDGDGEKIILSFAWI 3664
            V YHP+WV KS+ ++EPD  G   +LSFAWI
Sbjct: 1138 VAYHPKWVNKSMELQEPDAAGCASMLSFAWI 1168



 Score =  638 bits (1646), Expect = e-180
 Identities = 308/454 (67%), Positives = 371/454 (81%), Gaps = 3/454 (0%)
 Frame = +3

Query: 219  MESEGREEDLVV-QVSLGGFDCYVTAKVLTDYLEDAIGLVWRCRLKTSSTPPESYPNFEI 395
            ME++ RE++ VV QVS GGFD  VTA+ L  YL++ IG VWRCRLKTS TPPESYPNFEI
Sbjct: 1    METKRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEI 60

Query: 396  VDVNKIQRTDDYKKVEPHAFVHFVSHASVTAAQDAAGRCELFFNDKPLKASFG--NPFLI 569
             D   IQR D Y++VEPHAFVHF S  S T A++AAG CELFFN +P+K S G  NPF +
Sbjct: 61   TDTAVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHL 120

Query: 570  NQKTRTTTPYNFKDVYVEIGGLVSRGEYFVAWKGPATGVDFVVDPFDGTCKFLFTKDTVF 749
            NQ+ RTT P+   DV+VEIG LVSR E+ V W+GP +GVDF+VDPFDG CKF FT+DT F
Sbjct: 121  NQRRRTTIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAF 180

Query: 750  SFKGKGKHAVIKCDFKVEFLVRDINEVKEYKDMLSFVILLQLASSPVLYYRTADDDIEES 929
            SFKG  +HAVI+CDFK+EFLVRDINE+K+Y D    VILLQLAS+P ++YRTADDDIE  
Sbjct: 181  SFKGTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVL 240

Query: 930  ATFDLMDDEDPWIRTTDFTPSGAIGRCNTYKISIPARHGRRLKEAMDYLRRQRVPVGKLW 1109
              FDL+DD+DPWIRTTDFTPSGAIGRCN+Y++SIP RHG +LK A+++LR +RV    L 
Sbjct: 241  VPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLR 300

Query: 1110 QQLMIWNEPDFGMPVSDPFFCIQHETGITFDVLFLVNAVMHKGIINQHQLSERFYNLLRS 1289
            + L +  EP++ MP+SDPFFCI HE G+ F+++FLVNAVMHKGI NQHQLS+ F++LLR+
Sbjct: 301  RPLHVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRN 360

Query: 1290 QPGEVNIAALKHICSYRRPVFDAYDRLKLVQEWLLKNPKLRKIPKQLDDIVEVRRLAITP 1469
            QP +VNIAAL+HICSY+ PVFDA+ RLK VQ+WLLKNPKL +  KQLDDIVE+RRLAITP
Sbjct: 361  QPLDVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITP 420

Query: 1470 TKAYCLPPEVELSNRVLRNYKEFADRFLRVTFMD 1571
            T+AYCLPPEVELSNRVLR YK+ AD+FLRVTFMD
Sbjct: 421  TRAYCLPPEVELSNRVLRRYKDIADQFLRVTFMD 454


>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp.
            vesca]
          Length = 1197

 Score = 1130 bits (2923), Expect = 0.0
 Identities = 537/684 (78%), Positives = 594/684 (86%)
 Frame = +2

Query: 1613 NSFPQKTSVFKRVKAILTDGFHLCGRKYSFLAFSSNQLRDRSAWFFAENDKVSVLDIKSW 1792
            N+FPQKT V+ R++AIL +GFHLCGRKYSFLAFSSNQLRDRSAWFFAE+  +S+  IK+W
Sbjct: 479  NTFPQKTKVYVRIRAILMNGFHLCGRKYSFLAFSSNQLRDRSAWFFAEDKTISIQGIKNW 538

Query: 1793 MGKFTNRNIAKCAARMGQCFSSTYATVEVSALEVDEELPDINRNGYVFSDGIGMITLDLA 1972
            MG+FTNRN+AKCAARMGQCFSSTYATVEV + +V+ ELPDI RNGYVFSDGIG IT DLA
Sbjct: 539  MGRFTNRNVAKCAARMGQCFSSTYATVEVPSTQVNHELPDIERNGYVFSDGIGRITPDLA 598

Query: 1973 MEVAEKLKLDVNPPSAYQIRYAGCKGVVACWPGKDDGIRLSLRHSMNKFQSKHTTLEICS 2152
            MEVAEKLKLD +PPSAYQIRY GCKGVVACWP   DG RLSLR SMNKF S HTTLEICS
Sbjct: 599  MEVAEKLKLDRDPPSAYQIRYGGCKGVVACWPSTGDGFRLSLRRSMNKFASDHTTLEICS 658

Query: 2153 WTRFQPGFLNRQIITLLSTLNVPDEIFWKMQASMVSKLNQMLVDTDVAFDVITASCAEQG 2332
            WTR QPGFLNRQIITLLS LNVPDEIFW MQ +MVSKL QMLVDTDVAFDV+TASCAEQG
Sbjct: 659  WTRLQPGFLNRQIITLLSALNVPDEIFWTMQETMVSKLKQMLVDTDVAFDVLTASCAEQG 718

Query: 2333 NTGAIMLSAGFKPQTEPHLRGMLTCIRAAQLWGLREKARIFVHSGRWLMGCLDELGVLEH 2512
            N+ AIMLSAGFKPQTEPHLRGMLTCI+AAQLWGLREK RIFV SGRWLMGCLDELGVLE 
Sbjct: 719  NSAAIMLSAGFKPQTEPHLRGMLTCIQAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEQ 778

Query: 2513 GQCFIQVSTPSLENCFLKHGSRFSETKKNVEVIKGIVAIAKNPCLHPGDIRILEAVDAPG 2692
            GQCF+QVSTPSLENCF KHGSRF +T KN++VIKG V +AKNPCLHPGDIRILEAVDAPG
Sbjct: 779  GQCFVQVSTPSLENCFAKHGSRFDQTDKNLQVIKGFVVVAKNPCLHPGDIRILEAVDAPG 838

Query: 2693 LHHLVDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLVPPGKKSWMPMLYDPVEAKL 2872
            LHHL DCLVFPQKG RPHT+EASGSDLDGDLYFVTWDENL+PP KKSW PM Y+P EAKL
Sbjct: 839  LHHLHDCLVFPQKGHRPHTDEASGSDLDGDLYFVTWDENLIPPRKKSWQPMEYEPAEAKL 898

Query: 2873 LTRQVNQVDIIDFFAKNMVNESLGKICNAHVVHADHSEYGAQDEDCLKLAELAATAVDFP 3052
              R V   D+I+FF +NMVNE+LG ICNAHVVH+D SEYGA DE+CLKLAELAA AVDFP
Sbjct: 899  SGRSVTSQDLIEFFVRNMVNENLGAICNAHVVHSDRSEYGAFDENCLKLAELAAVAVDFP 958

Query: 3053 KTGKLVTMPPHLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDEDLVTSAEQSFVP 3232
            KTGK+VTMPPHLKPKLYPDFMGK+++QSYKSNKILGRLYR I DAYDED+  S+EQ+ VP
Sbjct: 959  KTGKIVTMPPHLKPKLYPDFMGKQDYQSYKSNKILGRLYRKICDAYDEDVANSSEQNHVP 1018

Query: 3233 GDIPYDKDLEVSGSADFVKVAWDCKCSYAGQLNALMGQYKVSREEEIVTGHVWSMPKYNS 3412
             D+ YD DLEV  +ADF+  AW+ KCSY  QL  LM QYK+ REEEIVTGHVWSMPKY S
Sbjct: 1019 SDVKYDMDLEVPKAADFIADAWERKCSYDSQLRGLMTQYKIMREEEIVTGHVWSMPKYTS 1078

Query: 3413 NKQGDLMERLKHAYNALRKEFRLLFEKMDSNLGENSVDEKNRIYEQKASAWYQVTYHPEW 3592
             KQG+L ERLKH+Y+AL+KEFR  FEKMD+       D+KN  YEQKASAWYQVTYHP+W
Sbjct: 1079 RKQGELQERLKHSYSALKKEFRQFFEKMDTGFESLIDDQKNSFYEQKASAWYQVTYHPDW 1138

Query: 3593 VKKSLNMKEPDGDGEKIILSFAWI 3664
            VKKSL++  PDG G+ ++LSFAWI
Sbjct: 1139 VKKSLDLHGPDGPGDVVMLSFAWI 1162



 Score =  616 bits (1588), Expect = e-173
 Identities = 308/454 (67%), Positives = 356/454 (78%), Gaps = 3/454 (0%)
 Frame = +3

Query: 219  MESEGREEDLVV-QVSLGGFDCYVTAKVLTDYLEDAIGLVWRCRLKTSSTPPESYPNFEI 395
            ME E RE D VV QVS GGF  +VTAK L  YLED IGLV+RCRLKTS TPPES PNFEI
Sbjct: 1    MELEERENDTVVTQVSFGGFGSHVTAKELVSYLEDEIGLVFRCRLKTSWTPPESVPNFEI 60

Query: 396  VDVNKIQRTDDYKKVEPHAFVHFVSHASVTAAQDAAGRCELFFNDKPLKASFG--NPFLI 569
             D   I+ TDDY+KVEPHAFVHF S  SVTA  DA GRC+LFFN++ LKAS G  N F +
Sbjct: 61   SDAADIETTDDYRKVEPHAFVHFASPESVTAVMDAVGRCQLFFNNQALKASLGPENLFNM 120

Query: 570  NQKTRTTTPYNFKDVYVEIGGLVSRGEYFVAWKGPATGVDFVVDPFDGTCKFLFTKDTVF 749
            N++ RT  P+   DV +EIG LV   E+FVAWKGP  GVDFVVDPFDGTCKF F +DT F
Sbjct: 121  NKRRRTKIPFKLADVRLEIGSLVRLDEFFVAWKGPDHGVDFVVDPFDGTCKFCFRRDTAF 180

Query: 750  SFKGKGKHAVIKCDFKVEFLVRDINEVKEYKDMLSFVILLQLASSPVLYYRTADDDIEES 929
            SFKG  KHAVI CDFK EF VR+I E K Y + L  V+LL+L SSP + YRTADDDI++S
Sbjct: 181  SFKGLNKHAVITCDFKAEFQVREIGEFKHYTEPLYHVLLLRLVSSPWVSYRTADDDIDQS 240

Query: 930  ATFDLMDDEDPWIRTTDFTPSGAIGRCNTYKISIPARHGRRLKEAMDYLRRQRVPVGKLW 1109
              FDL+DD+DPWIRTTDFTP+GAIGRCN Y++ IP RHG +LK+AM YL+ +RV    + 
Sbjct: 241  VLFDLLDDDDPWIRTTDFTPTGAIGRCNYYRVLIPPRHGAKLKKAMIYLKERRVQELFIK 300

Query: 1110 QQLMIWNEPDFGMPVSDPFFCIQHETGITFDVLFLVNAVMHKGIINQHQLSERFYNLLRS 1289
            +   I +EP FG P+SD  F I ++  I+FD+LFLVNAVMHKGI+NQHQLSE F++LLR+
Sbjct: 301  KPPRIQDEPGFGNPMSDALFSIHYQKNISFDILFLVNAVMHKGILNQHQLSESFFDLLRN 360

Query: 1290 QPGEVNIAALKHICSYRRPVFDAYDRLKLVQEWLLKNPKLRKIPKQLDDIVEVRRLAITP 1469
            QP E+N+AALKH+CSY+ PVFDA  RLKLVQEWLL+NPKL K PK+LDDI EVRRL ITP
Sbjct: 361  QPEEINVAALKHLCSYKHPVFDASKRLKLVQEWLLRNPKLIKNPKRLDDIAEVRRLVITP 420

Query: 1470 TKAYCLPPEVELSNRVLRNYKEFADRFLRVTFMD 1571
            TKAYCLPPEVELSNRVLR YKE ADRFLRVTFMD
Sbjct: 421  TKAYCLPPEVELSNRVLRKYKEVADRFLRVTFMD 454


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1198

 Score = 1125 bits (2909), Expect = 0.0
 Identities = 539/686 (78%), Positives = 597/686 (87%), Gaps = 1/686 (0%)
 Frame = +2

Query: 1610 SNSFPQKTSVFKRVKAILTDGFHLCGRKYSFLAFSSNQLRDRSAWFFAENDKVSVLDIKS 1789
            S SFPQKT +FKRV++ILT+GF+LCGR+YSFLAFSSNQLRDRSAWFFAE+  ++V+ IKS
Sbjct: 478  SYSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKS 537

Query: 1790 WMGKFTNRNIAKCAARMGQCFSSTYATVEVSALEVDEELPDINRNGYVFSDGIGMITLDL 1969
            WMGKFTN+NIAKCAARMGQCFSSTYAT+EV   EV+ +LPDI RNGY FSDGIGMIT DL
Sbjct: 538  WMGKFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDL 597

Query: 1970 AMEVAEKLKLDVNPPSAYQIRYAGCKGVVACWPGKDDGIRLSLRHSMNKFQSKHTTLEIC 2149
            A EVAEKLK D +PP AYQIRYAGCKGVVACWP + DGIRLSLR SMNKFQS HT LEIC
Sbjct: 598  AREVAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEIC 657

Query: 2150 SWTRFQPGFLNRQIITLLSTLNVPDEIFWKMQASMVSKLNQMLVDTDVAFDVITASCAEQ 2329
            SWTRFQPGFLNRQIITLLS LNVPD +FWKMQ  MVSKLNQMLVD+DVAFDV+TASCAEQ
Sbjct: 658  SWTRFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQ 717

Query: 2330 GNTGAIMLSAGFKPQTEPHLRGMLTCIRAAQLWGLREKARIFVHSGRWLMGCLDELGVLE 2509
            GN  AIMLSAGFKPQ EPHLRGMLTC+RAAQLWGLREKARIFV SGRWLMGCLDELGVLE
Sbjct: 718  GNVAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLE 777

Query: 2510 HGQCFIQVSTPSLENCFLKHGSRFSETKKNVEVIKGIVAIAKNPCLHPGDIRILEAVDAP 2689
             GQCFIQVS   LENCF+KHGS+FSETKKN++V+KG V IAKNPCLHPGDIRILEAVDAP
Sbjct: 778  QGQCFIQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAP 837

Query: 2690 GLHHLVDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLVPPGKKSWMPMLYDPVEAK 2869
            GLHHL DCLVFPQKGERPH NEASGSDLDGDLYFVTWDENL+PP K+SW+PM YD  EAK
Sbjct: 838  GLHHLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAK 897

Query: 2870 LLTRQVNQVDIIDFFAKNMVNESLGKICNAHVVHADHSEYGAQDEDCLKLAELAATAVDF 3049
             LTR VN  DI++FFAKNM NE+LG ICNAHVV AD SEYGA DE CL LAELAATAVDF
Sbjct: 898  QLTRPVNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDF 957

Query: 3050 PKTGKLVTMPPHLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAY-DEDLVTSAEQSF 3226
            PKTGK+V+MP  LKPK+YPDFMGKEE QSYKS KILGRLYR IKDAY D+D+  S+E +F
Sbjct: 958  PKTGKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSELNF 1017

Query: 3227 VPGDIPYDKDLEVSGSADFVKVAWDCKCSYAGQLNALMGQYKVSREEEIVTGHVWSMPKY 3406
            V GDIPYD DLEV G+ DF+  AWD KCSY GQLN L+ QYKV REEE+VTGHVWSMPK 
Sbjct: 1018 VRGDIPYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKG 1077

Query: 3407 NSNKQGDLMERLKHAYNALRKEFRLLFEKMDSNLGENSVDEKNRIYEQKASAWYQVTYHP 3586
            +S KQGDL ERLKH+YN L++EFR +FEKMD + G+   DEKN +YE+KASAWYQVTYHP
Sbjct: 1078 SSRKQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHP 1137

Query: 3587 EWVKKSLNMKEPDGDGEKIILSFAWI 3664
             W++KSL +++ DG G  ++LSFAWI
Sbjct: 1138 HWIQKSLELQDSDGAGISVMLSFAWI 1163



 Score =  648 bits (1672), Expect = 0.0
 Identities = 315/454 (69%), Positives = 371/454 (81%), Gaps = 3/454 (0%)
 Frame = +3

Query: 219  MESEGR-EEDLVVQVSLGGFDCYVTAKVLTDYLEDAIGLVWRCRLKTSSTPPESYPNFEI 395
            ME+EG  +E +V QVSLGGFD +VTAK L +YLE  IGLVWRCRLKTS TPPESYPNFEI
Sbjct: 1    METEGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEI 60

Query: 396  VDVNKIQRTDDYKKVEPHAFVHFVSHASVTAAQDAAGRCELFFNDKPLKASFG--NPFLI 569
             D+ KI RT+DY++VEPHAFVHF    S T A DAA RCELF N+K LKAS G  NPF +
Sbjct: 61   TDITKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTL 120

Query: 570  NQKTRTTTPYNFKDVYVEIGGLVSRGEYFVAWKGPATGVDFVVDPFDGTCKFLFTKDTVF 749
            NQ+ R TTP+    V VEIG LVSR E+FV W+GP TGVDF+VDPFDGTC+F F+++T F
Sbjct: 121  NQRRRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAF 180

Query: 750  SFKGKGKHAVIKCDFKVEFLVRDINEVKEYKDMLSFVILLQLASSPVLYYRTADDDIEES 929
            SFK   +HAVIKCDFKVEFLVRDINE+K+Y +    V+LLQLAS+P ++YRTADDDIE S
Sbjct: 181  SFKSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVS 240

Query: 930  ATFDLMDDEDPWIRTTDFTPSGAIGRCNTYKISIPARHGRRLKEAMDYLRRQRVPVGKLW 1109
              FDL+DD+DPWIRTTDFT SGAIGRC++Y++SIP RHG +L++A+D+L+ +RV    L 
Sbjct: 241  VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLR 300

Query: 1110 QQLMIWNEPDFGMPVSDPFFCIQHETGITFDVLFLVNAVMHKGIINQHQLSERFYNLLRS 1289
            + + I +EPDFGMP++DPFFCI H+ GI FDVLFLVNAVMHKGI NQHQLS  F++LLR+
Sbjct: 301  RPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRN 360

Query: 1290 QPGEVNIAALKHICSYRRPVFDAYDRLKLVQEWLLKNPKLRKIPKQLDDIVEVRRLAITP 1469
            QP EVN+AALKHI  YRRPVFDAY +LK+ QEWLLKNPK  K  K+LDDI E+RRL ITP
Sbjct: 361  QPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITP 420

Query: 1470 TKAYCLPPEVELSNRVLRNYKEFADRFLRVTFMD 1571
            TKAYCLPPEVELSNRVLR YK+ ADRFLRVTFMD
Sbjct: 421  TKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMD 454


>emb|CBI21038.3| unnamed protein product [Vitis vinifera]
          Length = 1035

 Score = 1122 bits (2901), Expect = 0.0
 Identities = 546/686 (79%), Positives = 603/686 (87%), Gaps = 1/686 (0%)
 Frame = +2

Query: 1610 SNSFPQKTSVFKRVKAILTDGFHLCGRKYSFLAFSSNQLRDRSAWFFAENDKVSVLDIKS 1789
            SNSFPQKT VFKRVK ILTDGF+LCGRKYSFLAFSSNQLRDRSAWFFAE+ K SV  IKS
Sbjct: 318  SNSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKS 377

Query: 1790 WMGKFTNRNIAKCAARMGQCFSSTYATVEVSALEVDEELPDINRNGYVFSDGIGMITLDL 1969
            WMGKFTNRN+AKCAARMGQCFSSTYATVEV + EV +ELPDI RNGY FSDGIG I  DL
Sbjct: 378  WMGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEV-KELPDIKRNGYDFSDGIGKIVPDL 436

Query: 1970 AMEVAEKLKLDVNPPSAYQIRYAGCKGVVACWPGKDDGIRLSLRHSMNKFQSKHTTLEIC 2149
            AMEVAEKLKL+   PSAYQIRYAGCKGVVACWP  +DGIRLS R SMNKF S HT LEIC
Sbjct: 437  AMEVAEKLKLE-GTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEIC 495

Query: 2150 SWTRFQPGFLNRQIITLLSTLNVPDEIFWKMQASMVSKLNQMLVDTDVAFDVITASCAEQ 2329
            SWTRFQPGFLNRQI+TLLS LNVPD+IFWKMQ SM+SKLNQML DTDVAFDV+ ASCAEQ
Sbjct: 496  SWTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQ 555

Query: 2330 GNTGAIMLSAGFKPQTEPHLRGMLTCIRAAQLWGLREKARIFVHSGRWLMGCLDELGVLE 2509
            GNT AIMLSAGFKPQTEPHL+GMLTCIRAAQ WGLREKARIFV SGRWLMGCLDELGVLE
Sbjct: 556  GNTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLE 615

Query: 2510 HGQCFIQVSTPSLENCFLKHGSRFSETKKNVEVIKGIVAIAKNPCLHPGDIRILEAVDAP 2689
             GQCFIQVS+PSLENCFLKHGSRFS  +KN++VIKGIVAIAKNPCLHPGD+RILEAVDAP
Sbjct: 616  QGQCFIQVSSPSLENCFLKHGSRFS-AQKNLKVIKGIVAIAKNPCLHPGDVRILEAVDAP 674

Query: 2690 GLHHLVDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLVPPGKKSWMPMLYDPVEAK 2869
            GL HLVDCLVFPQKG+RPH+NEASGSDLDGDLYFVTW+E L+PP K+SW PM YD  EAK
Sbjct: 675  GLEHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAK 734

Query: 2870 LLTRQVNQVDIIDFFAKNMVNESLGKICNAHVVHADHSEYGAQDEDCLKLAELAATAVDF 3049
             L R+V  +DIIDFF KNMVNE+LG ICNAHVVHAD SEYGA DE CL LAE AATAVDF
Sbjct: 735  ALAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDF 794

Query: 3050 PKTGKLVTMPPHLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDEDLVTSAEQSFV 3229
            PKTGKLVT+PP+LKPK+YPDFMGKEEFQ+Y+SNKILG++YR IKDAY+ED+  S+EQ F 
Sbjct: 795  PKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFG 854

Query: 3230 PGDIPYDKDLEVSGSADFVKVAWDCKCSYAGQLNALMGQYKVSREEEIVTGHVWSMPKYN 3409
               +P+D+DL + GSADF+  AW  KCSY GQLN L+GQYKV REEE+VTGHVWSMPKY 
Sbjct: 855  ADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYK 914

Query: 3410 SNKQGDLMERLKHAYNALRKEFRLLFEKMDSNLGENSVDEKNRIYEQKASAWYQVTYHPE 3589
            S KQG+L ERLKHAY++L+KEFR +FEKM+S+  + + DEKNR+YEQKASAWYQVTYHP 
Sbjct: 915  SRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPT 974

Query: 3590 WVKKSLNMKEPDG-DGEKIILSFAWI 3664
            WVKKSL ++ PD   GE+++LSFAWI
Sbjct: 975  WVKKSLELQNPDEVFGERVMLSFAWI 1000



 Score =  371 bits (953), Expect = 1e-99
 Identities = 180/236 (76%), Positives = 207/236 (87%), Gaps = 3/236 (1%)
 Frame = +3

Query: 873  LASSPVLYYRTADDDIEESATFDLMDDEDPWIRTTDFTPSGAIGRCNTYKISIPARHGRR 1052
            L+SSP +YYRTADDDIEE+  FDL+DD+DPWIRTTDFT SGAIGRCN+Y+ISIP R+G +
Sbjct: 60   LSSSPFVYYRTADDDIEETVPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAK 119

Query: 1053 LKEAMDYLRRQRVPV---GKLWQQLMIWNEPDFGMPVSDPFFCIQHETGITFDVLFLVNA 1223
            LK+AMDYLR +RV V      WQ L + +EPDFG+P+SDPFFCIQH+ GI F V+FLVNA
Sbjct: 120  LKKAMDYLRARRVNVLEDSPKWQ-LRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNA 178

Query: 1224 VMHKGIINQHQLSERFYNLLRSQPGEVNIAALKHICSYRRPVFDAYDRLKLVQEWLLKNP 1403
            VMHKGIINQHQLS++F++LLRSQ  ++NIAALKHICSYR PVFDAY RLKLV +WLLKNP
Sbjct: 179  VMHKGIINQHQLSDKFFDLLRSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNP 238

Query: 1404 KLRKIPKQLDDIVEVRRLAITPTKAYCLPPEVELSNRVLRNYKEFADRFLRVTFMD 1571
            KL K PK+LDDIVEVRRL ITP+KAYCLPPEVELSNRVLRNYKE +DRFLRVTFMD
Sbjct: 239  KLLKSPKELDDIVEVRRLVITPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMD 294


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score = 1122 bits (2901), Expect = 0.0
 Identities = 546/686 (79%), Positives = 603/686 (87%), Gaps = 1/686 (0%)
 Frame = +2

Query: 1610 SNSFPQKTSVFKRVKAILTDGFHLCGRKYSFLAFSSNQLRDRSAWFFAENDKVSVLDIKS 1789
            SNSFPQKT VFKRVK ILTDGF+LCGRKYSFLAFSSNQLRDRSAWFFAE+ K SV  IKS
Sbjct: 480  SNSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKS 539

Query: 1790 WMGKFTNRNIAKCAARMGQCFSSTYATVEVSALEVDEELPDINRNGYVFSDGIGMITLDL 1969
            WMGKFTNRN+AKCAARMGQCFSSTYATVEV + EV +ELPDI RNGY FSDGIG I  DL
Sbjct: 540  WMGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEV-KELPDIKRNGYDFSDGIGKIVPDL 598

Query: 1970 AMEVAEKLKLDVNPPSAYQIRYAGCKGVVACWPGKDDGIRLSLRHSMNKFQSKHTTLEIC 2149
            AMEVAEKLKL+   PSAYQIRYAGCKGVVACWP  +DGIRLS R SMNKF S HT LEIC
Sbjct: 599  AMEVAEKLKLE-GTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEIC 657

Query: 2150 SWTRFQPGFLNRQIITLLSTLNVPDEIFWKMQASMVSKLNQMLVDTDVAFDVITASCAEQ 2329
            SWTRFQPGFLNRQI+TLLS LNVPD+IFWKMQ SM+SKLNQML DTDVAFDV+ ASCAEQ
Sbjct: 658  SWTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQ 717

Query: 2330 GNTGAIMLSAGFKPQTEPHLRGMLTCIRAAQLWGLREKARIFVHSGRWLMGCLDELGVLE 2509
            GNT AIMLSAGFKPQTEPHL+GMLTCIRAAQ WGLREKARIFV SGRWLMGCLDELGVLE
Sbjct: 718  GNTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLE 777

Query: 2510 HGQCFIQVSTPSLENCFLKHGSRFSETKKNVEVIKGIVAIAKNPCLHPGDIRILEAVDAP 2689
             GQCFIQVS+PSLENCFLKHGSRFS  +KN++VIKGIVAIAKNPCLHPGD+RILEAVDAP
Sbjct: 778  QGQCFIQVSSPSLENCFLKHGSRFS-AQKNLKVIKGIVAIAKNPCLHPGDVRILEAVDAP 836

Query: 2690 GLHHLVDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLVPPGKKSWMPMLYDPVEAK 2869
            GL HLVDCLVFPQKG+RPH+NEASGSDLDGDLYFVTW+E L+PP K+SW PM YD  EAK
Sbjct: 837  GLEHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAK 896

Query: 2870 LLTRQVNQVDIIDFFAKNMVNESLGKICNAHVVHADHSEYGAQDEDCLKLAELAATAVDF 3049
             L R+V  +DIIDFF KNMVNE+LG ICNAHVVHAD SEYGA DE CL LAE AATAVDF
Sbjct: 897  ALAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDF 956

Query: 3050 PKTGKLVTMPPHLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDEDLVTSAEQSFV 3229
            PKTGKLVT+PP+LKPK+YPDFMGKEEFQ+Y+SNKILG++YR IKDAY+ED+  S+EQ F 
Sbjct: 957  PKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFG 1016

Query: 3230 PGDIPYDKDLEVSGSADFVKVAWDCKCSYAGQLNALMGQYKVSREEEIVTGHVWSMPKYN 3409
               +P+D+DL + GSADF+  AW  KCSY GQLN L+GQYKV REEE+VTGHVWSMPKY 
Sbjct: 1017 ADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYK 1076

Query: 3410 SNKQGDLMERLKHAYNALRKEFRLLFEKMDSNLGENSVDEKNRIYEQKASAWYQVTYHPE 3589
            S KQG+L ERLKHAY++L+KEFR +FEKM+S+  + + DEKNR+YEQKASAWYQVTYHP 
Sbjct: 1077 SRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPT 1136

Query: 3590 WVKKSLNMKEPDG-DGEKIILSFAWI 3664
            WVKKSL ++ PD   GE+++LSFAWI
Sbjct: 1137 WVKKSLELQNPDEVFGERVMLSFAWI 1162



 Score =  678 bits (1750), Expect = 0.0
 Identities = 335/457 (73%), Positives = 388/457 (84%), Gaps = 6/457 (1%)
 Frame = +3

Query: 219  MESEGREEDLVV-QVSLGGFDCYVTAKVLTDYLEDAIGLVWRCRLKTSSTPPESYPNFEI 395
            MESEG E+D+VV Q+S+GGFD YVTA  LT YLED IG V RCRLKTSSTPPESYP+FEI
Sbjct: 1    MESEGSEKDMVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPDFEI 60

Query: 396  VDVNKIQRTDDYKKVEPHAFVHFVSHASVTAAQDAAGRCELFFNDKPLKASFG--NPFLI 569
            +D  KI+RT+DYKKVEPHAFVHFVS  + T A DAAG+ ELF + KPLK S G   PF +
Sbjct: 61   IDTAKIERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHL 120

Query: 570  NQKTRTTTPYNFKDVYVEIGGLVSRGEYFVAWKGPATGVDFVVDPFDGTCKFLFTKDTVF 749
            NQ+ RTT P+ F DV +EIG LVSR EYF  W+GP++GVDF+VDPFDGTCKFLFTKDT F
Sbjct: 121  NQRRRTTFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAF 180

Query: 750  SFKGKGKHAVIKCDFKVEFLVRDINEVKEYKDMLSFVILLQLASSPVLYYRTADDDIEES 929
            SFKG  KHAVIKC+FKVEFLVR+INEV++ +DM S ++LLQL+SSP +YYRTADDDIEE+
Sbjct: 181  SFKGMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEET 240

Query: 930  ATFDLMDDEDPWIRTTDFTPSGAIGRCNTYKISIPARHGRRLKEAMDYLRRQRVPV---G 1100
              FDL+DD+DPWIRTTDFT SGAIGRCN+Y+ISIP R+G +LK+AMDYLR +RV V    
Sbjct: 241  VPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDS 300

Query: 1101 KLWQQLMIWNEPDFGMPVSDPFFCIQHETGITFDVLFLVNAVMHKGIINQHQLSERFYNL 1280
              W QL + +EPDFG+P+SDPFFCIQH+ GI F V+FLVNAVMHKGIINQHQLS++F++L
Sbjct: 301  PKW-QLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDL 359

Query: 1281 LRSQPGEVNIAALKHICSYRRPVFDAYDRLKLVQEWLLKNPKLRKIPKQLDDIVEVRRLA 1460
            LRSQ  ++NIAALKHICSYR PVFDAY RLKLV +WLLKNPKL K PK+LDDIVEVRRL 
Sbjct: 360  LRSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLV 419

Query: 1461 ITPTKAYCLPPEVELSNRVLRNYKEFADRFLRVTFMD 1571
            ITP+KAYCLPPEVELSNRVLRNYKE +DRFLRVTFMD
Sbjct: 420  ITPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMD 456


>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
            sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
            sinensis]
          Length = 1197

 Score = 1120 bits (2897), Expect = 0.0
 Identities = 546/685 (79%), Positives = 601/685 (87%), Gaps = 1/685 (0%)
 Frame = +2

Query: 1613 NSFPQKTSVFKRVKAILTDGFHLCGRKYSFLAFSSNQLRDRSAWFFAENDKVSVLDIKSW 1792
            NSF QKT VFKRV++IL+ GF+LCGRK+SFLAFSS+QLRD SAWFF+E+ K SVLDIK W
Sbjct: 479  NSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKW 538

Query: 1793 MGKFTNRNIAKCAARMGQCFSSTYATVEVSALEVDEELPDINRNGYVFSDGIGMITLDLA 1972
            MG+FT++NIAKCAARMGQCFSSTYATVEV   EVD ELPDI RNGYVFSDGIG IT DLA
Sbjct: 539  MGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLA 598

Query: 1973 MEVAEKLKLDVNPPS-AYQIRYAGCKGVVACWPGKDDGIRLSLRHSMNKFQSKHTTLEIC 2149
            MEVA+KLKLDVNPP  AYQIRYAGCKGVVACWP K DGIR+SLR SMNKFQS HTTLEIC
Sbjct: 599  MEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEIC 658

Query: 2150 SWTRFQPGFLNRQIITLLSTLNVPDEIFWKMQASMVSKLNQMLVDTDVAFDVITASCAEQ 2329
            SWTRFQPGFLNRQIITLLSTLNVPDE+FW MQ SM+SKLNQMLVD+DVAF+V+TA+CAEQ
Sbjct: 659  SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQ 718

Query: 2330 GNTGAIMLSAGFKPQTEPHLRGMLTCIRAAQLWGLREKARIFVHSGRWLMGCLDELGVLE 2509
            GNT AIMLSAGF PQTEPHLRGMLTCIRAAQLWGLREKARIFV +GRWLMGCLDELGVLE
Sbjct: 719  GNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLE 778

Query: 2510 HGQCFIQVSTPSLENCFLKHGSRFSETKKNVEVIKGIVAIAKNPCLHPGDIRILEAVDAP 2689
             GQCFIQVS P L NCF KHGSRF+ETKK ++VIKG V IAKNPCLHPGDIRILEAVD P
Sbjct: 779  GGQCFIQVSEPFLGNCFSKHGSRFAETKK-LQVIKGFVVIAKNPCLHPGDIRILEAVDHP 837

Query: 2690 GLHHLVDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLVPPGKKSWMPMLYDPVEAK 2869
             LHHL DCLVFPQKG+RPHTNEASGSDLDGDLYFVTWDENL+PP KKSW PM Y+  EAK
Sbjct: 838  ELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAK 897

Query: 2870 LLTRQVNQVDIIDFFAKNMVNESLGKICNAHVVHADHSEYGAQDEDCLKLAELAATAVDF 3049
             LTR V+Q DII+FFAK+MVNE+LG ICNAHVVHADHSEYGA DE+C+ LAELAATAVDF
Sbjct: 898  TLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDF 957

Query: 3050 PKTGKLVTMPPHLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDEDLVTSAEQSFV 3229
            PKTGK+VTMP HLKPKLYPDFMGKE +QSYKSNKILGRLYR  KDAYDED+  S+E    
Sbjct: 958  PKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDIN 1017

Query: 3230 PGDIPYDKDLEVSGSADFVKVAWDCKCSYAGQLNALMGQYKVSREEEIVTGHVWSMPKYN 3409
            P DI YD DLEV  S DF+  AW+ KCSY GQLN L+ QYKV+REEE+VTGH+WSMPKYN
Sbjct: 1018 PVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYN 1077

Query: 3410 SNKQGDLMERLKHAYNALRKEFRLLFEKMDSNLGENSVDEKNRIYEQKASAWYQVTYHPE 3589
            S KQG+L ERLKH+Y+ALRKEFR +FEKMDS+    S DEKN ++E+KASAWYQVTYHPE
Sbjct: 1078 SRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPE 1137

Query: 3590 WVKKSLNMKEPDGDGEKIILSFAWI 3664
            WVKKSL+++E D     ++LSFAWI
Sbjct: 1138 WVKKSLDLQEQDSARSVVLLSFAWI 1162



 Score =  607 bits (1565), Expect = e-170
 Identities = 301/454 (66%), Positives = 358/454 (78%), Gaps = 3/454 (0%)
 Frame = +3

Query: 219  MESEGREEDLV-VQVSLGGFDCYVTAKVLTDYLEDAIGLVWRCRLKTSSTPPESYPNFEI 395
            ME EGRE+ LV  QVS GGFD  V A  L  YLE+ +G VWRCRLKTS TP ESYP+F +
Sbjct: 1    MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFSV 60

Query: 396  VDVNKIQRTDDYKKVEPHAFVHFVSHASVTAAQDAAGRCELFFNDKPLKASFG--NPFLI 569
             +  ++++TDDY+KVEPHAFVHF     VT A DAAGR ELF N + LK S G  NPF +
Sbjct: 61   TNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENPFRL 120

Query: 570  NQKTRTTTPYNFKDVYVEIGGLVSRGEYFVAWKGPATGVDFVVDPFDGTCKFLFTKDTVF 749
            NQ+ RT+TP+   DV VEIG LVSR E+FVAW+GPA+G DF+VDPFDGTCKF FT+D  F
Sbjct: 121  NQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAF 180

Query: 750  SFKGKGKHAVIKCDFKVEFLVRDINEVKEYKDMLSFVILLQLASSPVLYYRTADDDIEES 929
            + K   +HAVIKC+FKVEFLVR+IN VK+Y +     ILLQLASSP ++YRTADDDI   
Sbjct: 181  ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL 240

Query: 930  ATFDLMDDEDPWIRTTDFTPSGAIGRCNTYKISIPARHGRRLKEAMDYLRRQRVPVGKLW 1109
              FD++DD+DPWIRTTDFTPSGAIGRCN+Y+ISI +RH  +L + + YL  +RV V  L 
Sbjct: 241  VPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLS 300

Query: 1110 QQLMIWNEPDFGMPVSDPFFCIQHETGITFDVLFLVNAVMHKGIINQHQLSERFYNLLRS 1289
            + + I  EPDF +P+SDPFFCI +E GI+F+++FLVNAVMHKGIINQHQLS+ F++LLR 
Sbjct: 301  RPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRG 360

Query: 1290 QPGEVNIAALKHICSYRRPVFDAYDRLKLVQEWLLKNPKLRKIPKQLDDIVEVRRLAITP 1469
            Q  EVN+AALKHI SY+ PVFDA  RLKLVQEWLLK+P+L K PKQ+DDIVEVRRL ITP
Sbjct: 361  QSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITP 420

Query: 1470 TKAYCLPPEVELSNRVLRNYKEFADRFLRVTFMD 1571
            TKAYCLPPEVELSNRVLR YK+ ADRFLRVTFMD
Sbjct: 421  TKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMD 454


>ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
            gi|462422376|gb|EMJ26639.1| hypothetical protein
            PRUPE_ppa000422mg [Prunus persica]
          Length = 1196

 Score = 1114 bits (2882), Expect = 0.0
 Identities = 538/686 (78%), Positives = 599/686 (87%), Gaps = 1/686 (0%)
 Frame = +2

Query: 1610 SNSFPQKTSVFKRVKAILTDGFHLCGRKYSFLAFSSNQLRDRSAWFFAENDKVSVLDIKS 1789
            SNSF QKT+VFKR + IL DGF+LCGRKY+FLAFSSNQLRDRSAWFFAE   +SV  I S
Sbjct: 477  SNSFLQKTNVFKRFRTILNDGFYLCGRKYTFLAFSSNQLRDRSAWFFAECVNISVGKITS 536

Query: 1790 WMGKFTNRNIAKCAARMGQCFSSTYATVEVSALEVDEELPDINRNGYVFSDGIGMITLDL 1969
            WMGKF N+N+AKCAARMGQCFSSTYATVEV++ EV++ +PDI RNGYVFSDGIGMIT DL
Sbjct: 537  WMGKFNNKNVAKCAARMGQCFSSTYATVEVTSSEVND-IPDIKRNGYVFSDGIGMITPDL 595

Query: 1970 AMEVAEKLKLDVNPPSAYQIRYAGCKGVVACWPGKDDGIRLSLRHSMNKFQSKHTTLEIC 2149
            A+EVAEKLKLD NPP AYQIR+AGCKGVVACWP K DG RLSLR SMNKF+SKHTTLEIC
Sbjct: 596  ALEVAEKLKLDRNPPCAYQIRFAGCKGVVACWPSKGDGFRLSLRTSMNKFESKHTTLEIC 655

Query: 2150 SWTRFQPGFLNRQIITLLSTLNVPDEIFWKMQASMVSKLNQMLVDTDVAFDVITASCAEQ 2329
            SWTR+QPGFLNRQIITLLSTLNV DEIFW+MQ  MV KLNQMLVDTDVAFDV+TASCAEQ
Sbjct: 656  SWTRYQPGFLNRQIITLLSTLNVEDEIFWRMQEKMVLKLNQMLVDTDVAFDVLTASCAEQ 715

Query: 2330 GNTGAIMLSAGFKPQTEPHLRGMLTCIRAAQLWGLREKARIFVHSGRWLMGCLDELGVLE 2509
            GN  AIMLSAGFKPQTEPHLRGMLTCI+AAQLWGLREKARIFVHSGRWLMG LDELGVLE
Sbjct: 716  GNAAAIMLSAGFKPQTEPHLRGMLTCIQAAQLWGLREKARIFVHSGRWLMGVLDELGVLE 775

Query: 2510 HGQCFIQVSTPSLENCFLKHGSRFSETKKNVEVIKGIVAIAKNPCLHPGDIRILEAVDAP 2689
             GQCF+QVSTP LE+CF KHGS F++ ++N++VIKG V IAKNPCLHPGDIRILEAVDAP
Sbjct: 776  QGQCFVQVSTPLLESCFAKHGSSFAQIERNLQVIKGHVVIAKNPCLHPGDIRILEAVDAP 835

Query: 2690 GLHHLVDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLVPPGKKSWMPMLYDPVEAK 2869
            GLHHL DCLVFPQKG+RPHT+EASGSDLDGDLYFVTWDENL+PP KKSWMPM YDP EAK
Sbjct: 836  GLHHLYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSKKSWMPMQYDPAEAK 895

Query: 2870 LLTRQVNQVDIIDFFAKNMVNESLGKICNAHVVHADHSEYGAQDEDCLKLAELAATAVDF 3049
            L  R V Q DIIDFF KNM NE+LG ICNAHVVHAD S+YGA D +CLKLAELAA AVDF
Sbjct: 896  LQGRPVTQQDIIDFFVKNMTNENLGPICNAHVVHADRSDYGALDVNCLKLAELAALAVDF 955

Query: 3050 PKTGKLVTMPPHLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDEDLVTSAEQSFV 3229
            PKTGK+V++P HLKP+LYPDF+GKE+ QSYKS KILGRLYR ++DAYDED  TS+E  + 
Sbjct: 956  PKTGKIVSLPQHLKPRLYPDFLGKEDNQSYKSTKILGRLYRKVRDAYDEDAATSSELHYF 1015

Query: 3230 PGDIPYDKDLEVSGSADFVKVAWDCKCSYAGQLNALMGQYKVSREEEIVTGHVWSMPKYN 3409
            P DIPYD DLEV G+ADFV  AW+ KCSY GQL  LMGQYKV REEEIVTGHVWS+PK N
Sbjct: 1016 PSDIPYDMDLEVPGAADFVFDAWEKKCSYDGQLKGLMGQYKVKREEEIVTGHVWSIPKSN 1075

Query: 3410 SNKQGDLMERLKHAYNALRKEFRLLFEKMDSNLGENSVDEKNRIYEQKASAWYQVTYHPE 3589
            S KQG+L ERL H+YNAL+KEFR +FE +DSNL   + DEKN + E+KASAWYQVTYHP+
Sbjct: 1076 SKKQGELKERLSHSYNALKKEFRQMFENLDSNLEALTDDEKNLLCEKKASAWYQVTYHPK 1135

Query: 3590 WVKKSLNMKEPDGDGEKII-LSFAWI 3664
            WVK+S  ++EPDG G+ ++ LSFAWI
Sbjct: 1136 WVKQSPPLQEPDGPGDVVVMLSFAWI 1161



 Score =  635 bits (1638), Expect = e-179
 Identities = 312/454 (68%), Positives = 368/454 (81%), Gaps = 3/454 (0%)
 Frame = +3

Query: 219  MESEGREEDLVV-QVSLGGFDCYVTAKVLTDYLEDAIGLVWRCRLKTSSTPPESYPNFEI 395
            ME EG E   VV QVS GGF  +  AK L  YLED IGLV+RCRLKTS TPPES+PNFEI
Sbjct: 1    MEFEGSENGSVVTQVSFGGFQHHARAKDLVTYLEDEIGLVYRCRLKTSWTPPESFPNFEI 60

Query: 396  VDVNKIQRTDDYKKVEPHAFVHFVSHASVTAAQDAAGRCELFFNDKPLKASFG--NPFLI 569
             +   ++RTDDY +VEPHAFVHFVS  SVT A DAAGRCELFFN++PLK S G  NP+ +
Sbjct: 61   -NTADVKRTDDYSRVEPHAFVHFVSPDSVTFAMDAAGRCELFFNNEPLKVSLGPENPYFL 119

Query: 570  NQKTRTTTPYNFKDVYVEIGGLVSRGEYFVAWKGPATGVDFVVDPFDGTCKFLFTKDTVF 749
            N++ RT TP+   DV+VEIG LV + E+F +W+GP  GVDF+VDPFDGTCKF FT DT F
Sbjct: 120  NRRRRTKTPFKLSDVHVEIGSLVRQDEFFASWRGPPYGVDFIVDPFDGTCKFCFTMDTAF 179

Query: 750  SFKGKGKHAVIKCDFKVEFLVRDINEVKEYKDMLSFVILLQLASSPVLYYRTADDDIEES 929
            SFKG  KHAVIKCDFKVEFLVR+I E+K+Y D    VILL+L SSP + YRTADDDI++S
Sbjct: 180  SFKGTKKHAVIKCDFKVEFLVREIAEIKQYTDTSYLVILLRLTSSPWVSYRTADDDIDQS 239

Query: 930  ATFDLMDDEDPWIRTTDFTPSGAIGRCNTYKISIPARHGRRLKEAMDYLRRQRVPVGKLW 1109
              FDL+DD+DPWIRTTDFTPSGAIGRCN+Y++ IP RHG +LK+AM+YLR +RV    + 
Sbjct: 240  VPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVLIPPRHGAKLKKAMNYLRERRVKEVCIK 299

Query: 1110 QQLMIWNEPDFGMPVSDPFFCIQHETGITFDVLFLVNAVMHKGIINQHQLSERFYNLLRS 1289
                I +EPDFGM  ++PFF IQ+E GI+F+++FLVNAVMHKG +NQHQLS+ F++LLRS
Sbjct: 300  WPPKIQDEPDFGMSNTEPFFSIQYEEGISFEIMFLVNAVMHKGTVNQHQLSDSFFHLLRS 359

Query: 1290 QPGEVNIAALKHICSYRRPVFDAYDRLKLVQEWLLKNPKLRKIPKQLDDIVEVRRLAITP 1469
            QP E+N+AALKH+CSYR PVFDA +RLK+VQ+WLLKNPKL K PK+LDDI EVRRL ITP
Sbjct: 360  QPKEINVAALKHLCSYRSPVFDACERLKVVQDWLLKNPKLVKDPKRLDDIAEVRRLVITP 419

Query: 1470 TKAYCLPPEVELSNRVLRNYKEFADRFLRVTFMD 1571
            TKAYCLPPEVELSNRVLR YKE ADRFLRVTFMD
Sbjct: 420  TKAYCLPPEVELSNRVLRKYKEVADRFLRVTFMD 453


>ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
            gi|508782234|gb|EOY29490.1| RNA-dependent RNA polymerase
            6 [Theobroma cacao]
          Length = 1197

 Score = 1096 bits (2834), Expect = 0.0
 Identities = 530/685 (77%), Positives = 592/685 (86%)
 Frame = +2

Query: 1610 SNSFPQKTSVFKRVKAILTDGFHLCGRKYSFLAFSSNQLRDRSAWFFAENDKVSVLDIKS 1789
            S  F QKT VFKRV++ILTDGF+LCGRKYSFLAFS+NQLRD SAWFFAE+ K SVL I  
Sbjct: 478  STFFSQKTGVFKRVRSILTDGFYLCGRKYSFLAFSANQLRDSSAWFFAEDGKTSVLQILR 537

Query: 1790 WMGKFTNRNIAKCAARMGQCFSSTYATVEVSALEVDEELPDINRNGYVFSDGIGMITLDL 1969
            WMGKFTNRNIAKCAARMGQCFSSTYATVEV + EV+  LPDI RNGYVFSDGIG IT DL
Sbjct: 538  WMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTEVNPFLPDIERNGYVFSDGIGKITPDL 597

Query: 1970 AMEVAEKLKLDVNPPSAYQIRYAGCKGVVACWPGKDDGIRLSLRHSMNKFQSKHTTLEIC 2149
            A EVA+KLKLD+NPP AYQIRYAGCKGVVACWP + DG+RLSLR SMNKF S HTTLEIC
Sbjct: 598  AKEVAQKLKLDLNPPCAYQIRYAGCKGVVACWPEEGDGVRLSLRCSMNKFFSDHTTLEIC 657

Query: 2150 SWTRFQPGFLNRQIITLLSTLNVPDEIFWKMQASMVSKLNQMLVDTDVAFDVITASCAEQ 2329
            SWTRFQPGFLNRQIITLLST  VPDE+FW+MQ +MVSKLN++LVDTDVAF+V+T+SC+EQ
Sbjct: 658  SWTRFQPGFLNRQIITLLSTQYVPDEVFWEMQNTMVSKLNKILVDTDVAFEVLTSSCSEQ 717

Query: 2330 GNTGAIMLSAGFKPQTEPHLRGMLTCIRAAQLWGLREKARIFVHSGRWLMGCLDELGVLE 2509
            GN  AIMLSAGFKPQTEPHLRG+LTC+RA+QL GLREKARIFV SGRWLMG LDELGVLE
Sbjct: 718  GNAAAIMLSAGFKPQTEPHLRGILTCVRASQLCGLREKARIFVPSGRWLMGVLDELGVLE 777

Query: 2510 HGQCFIQVSTPSLENCFLKHGSRFSETKKNVEVIKGIVAIAKNPCLHPGDIRILEAVDAP 2689
             GQCFIQVS PS+ENCFLKHGSRF+ETKKN EVI+G+V IAKNPCLHPGDIRILEAVDAP
Sbjct: 778  QGQCFIQVSNPSVENCFLKHGSRFAETKKNFEVIQGLVVIAKNPCLHPGDIRILEAVDAP 837

Query: 2690 GLHHLVDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLVPPGKKSWMPMLYDPVEAK 2869
            GLHHL DCLVFPQKGERPHTNEASGSDLDGDLYFVTW++ L+PPGKKSW PM YDP E K
Sbjct: 838  GLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWEDLLIPPGKKSWPPMQYDPGETK 897

Query: 2870 LLTRQVNQVDIIDFFAKNMVNESLGKICNAHVVHADHSEYGAQDEDCLKLAELAATAVDF 3049
             + R+VN  DIIDFFAKNMVNE LG ICNAHVVHAD SEYGA DE C+ LAELAATAVDF
Sbjct: 898  EIQREVNHKDIIDFFAKNMVNEHLGTICNAHVVHADLSEYGALDEKCIHLAELAATAVDF 957

Query: 3050 PKTGKLVTMPPHLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDEDLVTSAEQSFV 3229
            PKTGK+V+MP +LKPKLYPDFMGKEE+QSYKS KILGRLYR+IKD YDEDL  S+E +  
Sbjct: 958  PKTGKIVSMPANLKPKLYPDFMGKEEYQSYKSRKILGRLYRHIKDVYDEDLSESSEINLD 1017

Query: 3230 PGDIPYDKDLEVSGSADFVKVAWDCKCSYAGQLNALMGQYKVSREEEIVTGHVWSMPKYN 3409
              DI YD DLEV+GSAD++  AW  KCSY  QL  L+GQYKV REEE+VTGH+WSMPKY 
Sbjct: 1018 SPDINYDTDLEVTGSADYIDDAWVKKCSYDRQLIGLLGQYKVKREEEVVTGHIWSMPKYT 1077

Query: 3410 SNKQGDLMERLKHAYNALRKEFRLLFEKMDSNLGENSVDEKNRIYEQKASAWYQVTYHPE 3589
            S K GDL E+L H+Y ALRKEFR +FE MDS + + + DE+N +YE+KASAWYQVTYHP+
Sbjct: 1078 SRKLGDLKEKLGHSYGALRKEFRQIFESMDSEIEQLNEDERNELYERKASAWYQVTYHPK 1137

Query: 3590 WVKKSLNMKEPDGDGEKIILSFAWI 3664
            WV+K L +++ DG    ++LSFAWI
Sbjct: 1138 WVEKKLELQKSDGADPVVMLSFAWI 1162



 Score =  640 bits (1652), Expect = e-180
 Identities = 312/454 (68%), Positives = 370/454 (81%), Gaps = 3/454 (0%)
 Frame = +3

Query: 219  MESEGREEDLVV-QVSLGGFDCYVTAKVLTDYLEDAIGLVWRCRLKTSSTPPESYPNFEI 395
            MES+G E+D VV QVS+GGF  +V AK L +Y ++ +G+VWRCRLKTS TPPESYPNFEI
Sbjct: 1    MESQGSEKDTVVTQVSVGGFGRHVAAKDLMEYFDNEVGVVWRCRLKTSWTPPESYPNFEI 60

Query: 396  VDVNKIQRTDDYKKVEPHAFVHFVSHASVTAAQDAAGRCELFFNDKPLKASFG--NPFLI 569
            +D   IQRTDDYKKVEPHAFVHF S  + T A DAAGR EL FN++ LK S G  NP+ +
Sbjct: 61   LDSTVIQRTDDYKKVEPHAFVHFASPLTATWAVDAAGRTELVFNNQLLKVSLGPENPYYL 120

Query: 570  NQKTRTTTPYNFKDVYVEIGGLVSRGEYFVAWKGPATGVDFVVDPFDGTCKFLFTKDTVF 749
            N++ R TTP+   DV ++IGG+VSR E+FV W+GP  GVDF+VDPFDGTCKF F++DT F
Sbjct: 121  NRRRRNTTPFKLSDVCLDIGGMVSRDEFFVGWRGPPFGVDFLVDPFDGTCKFCFSRDTAF 180

Query: 750  SFKGKGKHAVIKCDFKVEFLVRDINEVKEYKDMLSFVILLQLASSPVLYYRTADDDIEES 929
            SFKG  ++AVIKCDFKVEFLVRDINE+K+Y +    V+ LQLASSP ++YRTADD+IEES
Sbjct: 181  SFKGTTEYAVIKCDFKVEFLVRDINEIKQYTEPSGLVVFLQLASSPRVWYRTADDEIEES 240

Query: 930  ATFDLMDDEDPWIRTTDFTPSGAIGRCNTYKISIPARHGRRLKEAMDYLRRQRVPVGKLW 1109
              FDL+DD+D WIRTTDFTPSGAIGRCNTY++ I  RHG +LK+A+DYLR QRVP+  + 
Sbjct: 241  VPFDLLDDDDQWIRTTDFTPSGAIGRCNTYRVVIRPRHGAKLKKALDYLREQRVPMDYVR 300

Query: 1110 QQLMIWNEPDFGMPVSDPFFCIQHETGITFDVLFLVNAVMHKGIINQHQLSERFYNLLRS 1289
              L I +EPDFG  +SDPF+CI ++ GI F+++FLVNAVMHKGI NQHQLSE F+NLLR 
Sbjct: 301  WPLRISDEPDFGRSMSDPFYCIDYKEGIPFEIMFLVNAVMHKGIFNQHQLSEDFFNLLRD 360

Query: 1290 QPGEVNIAALKHICSYRRPVFDAYDRLKLVQEWLLKNPKLRKIPKQLDDIVEVRRLAITP 1469
            QP EVN+AALKHI SYRRPVFDAY RLK V +WLL+NP L K PKQLDDIVE+RRL ITP
Sbjct: 361  QPREVNVAALKHIYSYRRPVFDAYKRLKTVHDWLLRNPILFKSPKQLDDIVEIRRLVITP 420

Query: 1470 TKAYCLPPEVELSNRVLRNYKEFADRFLRVTFMD 1571
            TKA+CL PEVELSNRVLR YKE ADRFLRVTFMD
Sbjct: 421  TKAHCLLPEVELSNRVLRKYKEVADRFLRVTFMD 454


>gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
          Length = 1194

 Score = 1095 bits (2833), Expect = 0.0
 Identities = 528/686 (76%), Positives = 590/686 (86%), Gaps = 1/686 (0%)
 Frame = +2

Query: 1610 SNSFPQKTSVFKRVKAILTDGFHLCGRKYSFLAFSSNQLRDRSAWFFAENDKVSVLDIKS 1789
            SNS  QKT VFKRVK++LTDGF+LCG++YSFLAFSSNQLRDRSAWFFAE+ K++V  IK 
Sbjct: 474  SNSTSQKTKVFKRVKSLLTDGFYLCGQRYSFLAFSSNQLRDRSAWFFAEDGKITVNGIKK 533

Query: 1790 WMGKFTNRNIAKCAARMGQCFSSTYATVEVSALEVDEELPDINRNGYVFSDGIGMITLDL 1969
            WMG+F NRNIAKCAARMGQCFSSTYATVEV   EV+ +L +I RN YVFSDGIGMIT DL
Sbjct: 534  WMGRFNNRNIAKCAARMGQCFSSTYATVEVPLTEVNFDLEEIERNTYVFSDGIGMITPDL 593

Query: 1970 AMEVAEKLKLDVNPPSAYQIRYAGCKGVVACWPGKDDGIRLSLRHSMNKFQSKHTTLEIC 2149
            A EVAEKLKLD+NPPSAYQIRYAGCKGVVACWP K DGIRLSLR SMNKF SKHT LEIC
Sbjct: 594  AKEVAEKLKLDINPPSAYQIRYAGCKGVVACWPPKGDGIRLSLRRSMNKFDSKHTILEIC 653

Query: 2150 SWTRFQPGFLNRQIITLLSTLNVPDEIFWKMQASMVSKLNQMLVDTDVAFDVITASCAEQ 2329
            SWTRFQPGFLNRQI+TLLSTLNV DEIFWKMQ +M+ KLNQML D DVAF+V+TASC EQ
Sbjct: 654  SWTRFQPGFLNRQIVTLLSTLNVRDEIFWKMQETMLFKLNQMLTDADVAFNVLTASCPEQ 713

Query: 2330 GNTGAIMLSAGFKPQTEPHLRGMLTCIRAAQLWGLREKARIFVHSGRWLMGCLDELGVLE 2509
            GN GAIMLSAGFKPQ+EPHL+GMLTCIRAAQLWGLREKARIFV  GRWLMGCLDELGVLE
Sbjct: 714  GNVGAIMLSAGFKPQSEPHLQGMLTCIRAAQLWGLREKARIFVPLGRWLMGCLDELGVLE 773

Query: 2510 HGQCFIQVSTPSLENCFLKHGSRFSETKKNVEVIKGIVAIAKNPCLHPGDIRILEAVDAP 2689
             GQCFIQVSTPSLENCF KHGSRFSETK N+EVIKG V IAKNPCLHPGDIRILEAVD P
Sbjct: 774  QGQCFIQVSTPSLENCFSKHGSRFSETKNNLEVIKGFVVIAKNPCLHPGDIRILEAVDVP 833

Query: 2690 GLHHLVDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLVPPGKKSWMPMLYDPVEAK 2869
            GLHHL DCLVFPQKG+RPH NEASGSDLDGDLYFVTWDENL+PP KKSW PM YDP + +
Sbjct: 834  GLHHLYDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKKSWNPMQYDPAKPR 893

Query: 2870 LLTRQVNQVDIIDFFAKNMVNESLGKICNAHVVHADHSEYGAQDEDCLKLAELAATAVDF 3049
             L R V Q DIIDFF++NMVNESLG ICNAHVVHAD S+YGA DE CL LAELAA AVDF
Sbjct: 894  TLPRDVTQKDIIDFFSRNMVNESLGAICNAHVVHADLSDYGALDEKCLSLAELAAIAVDF 953

Query: 3050 PKTGKLVTMPPHLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDEDLVTSAEQSFV 3229
            PKTG +VTMP HLKPK+YPDFMGKEE+QSYKS KI+GRLYR IKD Y +D+  S+E + V
Sbjct: 954  PKTGIIVTMPAHLKPKIYPDFMGKEEYQSYKSTKIMGRLYRQIKDEYSDDVSPSSELNIV 1013

Query: 3230 PGDIPYDKDLEVSGSADFVKVAWDCKCSYAGQLNALMGQYKVSREEEIVTGHVWSMPKYN 3409
              +IP+D DLEV G+ADF+  AW+ KCSY GQL  LM QYKV REEE+VTG +WSMPK+N
Sbjct: 1014 SSNIPFDTDLEVPGAADFLDDAWEKKCSYDGQLKGLMIQYKVKREEEVVTGQIWSMPKHN 1073

Query: 3410 SNKQGDLMERLKHAYNALRKEFRLLFEKMDSNLGENSVDEKNRIYEQKASAWYQVTYHPE 3589
            S K+GDL ERLKH+Y  LRKEFR +FEK+DS+  + + DEKN +YE++ASAWYQ+TYHP+
Sbjct: 1074 SRKEGDLKERLKHSYTGLRKEFRQVFEKVDSDFEQLTDDEKNVLYEKRASAWYQITYHPK 1133

Query: 3590 WVKKSLNMKEPDGDGEKII-LSFAWI 3664
            WVKKS +M +   + + ++ LSFAWI
Sbjct: 1134 WVKKSQDMHDQLEEVKNVVMLSFAWI 1159



 Score =  572 bits (1475), Expect = e-160
 Identities = 284/454 (62%), Positives = 347/454 (76%), Gaps = 3/454 (0%)
 Frame = +3

Query: 219  MESEGREEDLVV-QVSLGGFDCYVTAKVLTDYLEDAIGLVWRCRLKTSSTPPESYPNFEI 395
            ME EG E+D VV Q+S+GGFD +V AK L D+LE  +G+V+RCRLKTS T  ESYP FE 
Sbjct: 1    MELEGSEKDTVVTQISIGGFDRHVKAKDLMDFLEYEVGIVYRCRLKTSCTARESYPTFEN 60

Query: 396  VDVNKIQRTDDYKKVEPHAFVHFVSHASVTAAQDAAGRCELFFNDKPLKASFGNPFL--I 569
            ++   I  + D ++VEPHAFVHF S  SV           L  N++ LK + G   L  +
Sbjct: 61   INSENIMESIDIRQVEPHAFVHFASPESVNWTLSNP----LMLNNQTLKVTLGPETLYRM 116

Query: 570  NQKTRTTTPYNFKDVYVEIGGLVSRGEYFVAWKGPATGVDFVVDPFDGTCKFLFTKDTVF 749
            NQ+ RTTTP    DV VEIG LV R E+FVAW+GP+ GVDF+VDPFDG CKF FT+DT F
Sbjct: 117  NQRRRTTTPIKLADVIVEIGNLVRRDEFFVAWRGPSYGVDFLVDPFDGLCKFCFTRDTAF 176

Query: 750  SFKGKGKHAVIKCDFKVEFLVRDINEVKEYKDMLSFVILLQLASSPVLYYRTADDDIEES 929
            SFK   K A++KCDFKVEFLVRDINE+K+Y D    V+LL LASSP ++YRTADDDIE S
Sbjct: 177  SFKDMAKLAMMKCDFKVEFLVRDINEIKQYTDTSHLVVLLLLASSPRVWYRTADDDIEVS 236

Query: 930  ATFDLMDDEDPWIRTTDFTPSGAIGRCNTYKISIPARHGRRLKEAMDYLRRQRVPVGKLW 1109
              FDL+DD+DPWIRTTDFTPSGAIGRCN+Y++SIP RHG +LK+AM YLR +RV    L 
Sbjct: 237  VPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGSKLKKAMSYLRERRVQETPLR 296

Query: 1110 QQLMIWNEPDFGMPVSDPFFCIQHETGITFDVLFLVNAVMHKGIINQHQLSERFYNLLRS 1289
            + L I +EPDF +P+SDP F +  + GI F+++FL+N ++HKGI NQH +S+  ++L R+
Sbjct: 297  KALRIQSEPDFAVPMSDPIFYVHGKHGIPFEIMFLLNVIVHKGIFNQHNISDGLFDLFRN 356

Query: 1290 QPGEVNIAALKHICSYRRPVFDAYDRLKLVQEWLLKNPKLRKIPKQLDDIVEVRRLAITP 1469
            QP E+N+AALKHI SY+RPVFDAY +LK VQEWLL+NPKL KIP+QLDDI EVRRL ITP
Sbjct: 357  QPREINLAALKHISSYKRPVFDAYAKLKNVQEWLLRNPKLLKIPRQLDDIAEVRRLVITP 416

Query: 1470 TKAYCLPPEVELSNRVLRNYKEFADRFLRVTFMD 1571
            T+AYCLPPEVELSNRVLR YKE +DRFLRVTFMD
Sbjct: 417  TRAYCLPPEVELSNRVLRKYKEVSDRFLRVTFMD 450


>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
            gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
            6 [Gossypium hirsutum]
          Length = 1196

 Score = 1088 bits (2815), Expect = 0.0
 Identities = 526/685 (76%), Positives = 588/685 (85%)
 Frame = +2

Query: 1610 SNSFPQKTSVFKRVKAILTDGFHLCGRKYSFLAFSSNQLRDRSAWFFAENDKVSVLDIKS 1789
            S SF QKT VFKRVK+ILTDGF+LCGRKYSFLAFS+NQLRDR+AWFFAE+ K++VL I  
Sbjct: 477  STSFSQKTGVFKRVKSILTDGFYLCGRKYSFLAFSANQLRDRAAWFFAEDGKINVLQIIG 536

Query: 1790 WMGKFTNRNIAKCAARMGQCFSSTYATVEVSALEVDEELPDINRNGYVFSDGIGMITLDL 1969
            WMGKFTNRNIAKCAARMGQCFSSTYATVEV + +V+  LPDI RNGY FSDGIG IT DL
Sbjct: 537  WMGKFTNRNIAKCAARMGQCFSSTYATVEVPSGQVNMHLPDIKRNGYDFSDGIGKITPDL 596

Query: 1970 AMEVAEKLKLDVNPPSAYQIRYAGCKGVVACWPGKDDGIRLSLRHSMNKFQSKHTTLEIC 2149
            AMEVA+KLKLD+NPP AYQIRYAGCKGVVACWP + D IRLSLR SM KF S HTTLEIC
Sbjct: 597  AMEVAQKLKLDLNPPCAYQIRYAGCKGVVACWPEEGDRIRLSLRSSMIKFFSHHTTLEIC 656

Query: 2150 SWTRFQPGFLNRQIITLLSTLNVPDEIFWKMQASMVSKLNQMLVDTDVAFDVITASCAEQ 2329
            SWTRFQPGFLNRQIITLLSTL VPDE+FW MQ SMVSKL+++LVDTD AF+V+ +SC EQ
Sbjct: 657  SWTRFQPGFLNRQIITLLSTLGVPDEVFWGMQNSMVSKLDKVLVDTDAAFEVVISSCGEQ 716

Query: 2330 GNTGAIMLSAGFKPQTEPHLRGMLTCIRAAQLWGLREKARIFVHSGRWLMGCLDELGVLE 2509
            G+T AIMLSAGFKPQTEPHLRGMLTC+RA+QLWGLREK+RIF+HSGRWLMG LDELGVLE
Sbjct: 717  GHTPAIMLSAGFKPQTEPHLRGMLTCVRASQLWGLREKSRIFIHSGRWLMGVLDELGVLE 776

Query: 2510 HGQCFIQVSTPSLENCFLKHGSRFSETKKNVEVIKGIVAIAKNPCLHPGDIRILEAVDAP 2689
             GQCFIQVS PSL+NCFLKHGSRF+ETKKN EVIKG+V IAKNPCLHPGDIRILEAVDAP
Sbjct: 777  QGQCFIQVSNPSLQNCFLKHGSRFAETKKNFEVIKGLVVIAKNPCLHPGDIRILEAVDAP 836

Query: 2690 GLHHLVDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLVPPGKKSWMPMLYDPVEAK 2869
            GLHHL DCLVFPQKGERPHTNEASGSDLDGDLYFVTW+E L+PP KKS  PM YD    +
Sbjct: 837  GLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWEEALIPPSKKSSQPMQYDLDAPR 896

Query: 2870 LLTRQVNQVDIIDFFAKNMVNESLGKICNAHVVHADHSEYGAQDEDCLKLAELAATAVDF 3049
             L R V   DII+FF+KNMVNE LG ICNAHVVH+D SE+GA DE C+ LAELAA AVDF
Sbjct: 897  ELNRSVTHKDIIEFFSKNMVNEHLGSICNAHVVHSDLSEHGASDEKCIHLAELAAIAVDF 956

Query: 3050 PKTGKLVTMPPHLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDEDLVTSAEQSFV 3229
            PKTGK+V+MP  LKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYD+D+  S+E +F 
Sbjct: 957  PKTGKIVSMPAQLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDKDVSESSELNFG 1016

Query: 3230 PGDIPYDKDLEVSGSADFVKVAWDCKCSYAGQLNALMGQYKVSREEEIVTGHVWSMPKYN 3409
              DI YD DLE++GSAD++  AW  KCSY GQL  L+ QYKV REEE+VTG +WSMPKY 
Sbjct: 1017 ASDINYDADLEITGSADYITDAWAKKCSYDGQLIGLLKQYKVKREEEVVTGQIWSMPKYA 1076

Query: 3410 SNKQGDLMERLKHAYNALRKEFRLLFEKMDSNLGENSVDEKNRIYEQKASAWYQVTYHPE 3589
            S K GDL E+L H+Y +LRKEFR LFE MDS   + + DEKN++YE+KASAWYQVTYHPE
Sbjct: 1077 SKKLGDLKEKLGHSYGSLRKEFRQLFENMDSEFEQLNEDEKNKLYERKASAWYQVTYHPE 1136

Query: 3590 WVKKSLNMKEPDGDGEKIILSFAWI 3664
            WV+K L  ++PDGD   ++LSFAWI
Sbjct: 1137 WVQKKLEFQKPDGDEGVVMLSFAWI 1161



 Score =  605 bits (1560), Expect = e-170
 Identities = 303/454 (66%), Positives = 359/454 (79%), Gaps = 3/454 (0%)
 Frame = +3

Query: 219  MESEGR-EEDLVVQVSLGGFDCYVTAKVLTDYLEDAIGLVWRCRLKTSSTPPESYPNFEI 395
            ME EG  +E +V QVS+GGFD +V A+ L  YLE+ +GLVWRCRLKTS TPPESYPNFEI
Sbjct: 1    MELEGSVKETVVTQVSVGGFDRHVKARDLMKYLENEVGLVWRCRLKTSWTPPESYPNFEI 60

Query: 396  VDVNKIQRTDDYKKVEPHAFVHFVSHASVTAAQDAAGRCELFFNDKPLKASFG--NPFLI 569
             D   IQR D+YKKVEPHAFVHF S  +VT A DAAGR EL FN++ LK S G  NP+ +
Sbjct: 61   TDTTVIQRKDNYKKVEPHAFVHFASPQAVTWAVDAAGRTELAFNNQLLKVSLGPENPYYL 120

Query: 570  NQKTRTTTPYNFKDVYVEIGGLVSRGEYFVAWKGPATGVDFVVDPFDGTCKFLFTKDTVF 749
            N++ R TTP+   DV +EIG L S  E+ V W+GP +GV+F+VDPFD TCKF F++DT F
Sbjct: 121  NRRRRDTTPFKLPDVSLEIGTLASCDEFIVGWRGPPSGVEFLVDPFDCTCKFCFSRDTAF 180

Query: 750  SFKGKGKHAVIKCDFKVEFLVRDINEVKEYKDMLSFVILLQLASSPVLYYRTADDDIEES 929
            SFKG  +HAVIKCDFKVEFLVR+INEVK+Y +   FV+LLQLASSP ++YRTADDD E++
Sbjct: 181  SFKGTNEHAVIKCDFKVEFLVREINEVKQYSEPTGFVVLLQLASSPWVWYRTADDDFEKT 240

Query: 930  ATFDLMDDEDPWIRTTDFTPSGAIGRCNTYKISIPARHGRRLKEAMDYLRRQRVPVGKLW 1109
              F L+DD+D WIRTTDFT SGAIGRCNTY++ +  RHG +LK+AMDYLR +RVPV  L 
Sbjct: 241  VPFGLLDDDDQWIRTTDFTASGAIGRCNTYRVLVRPRHGLKLKKAMDYLRERRVPVEDLR 300

Query: 1110 QQLMIWNEPDFGMPVSDPFFCIQHETGITFDVLFLVNAVMHKGIINQHQLSERFYNLLRS 1289
             QL I +EPDFG  +SD F+ I  E GI F+++FLVNAV+HKGI NQHQLS  F+ LLR+
Sbjct: 301  SQLRIRDEPDFGRSMSDHFYYIYKE-GIPFEIMFLVNAVLHKGIFNQHQLSMDFFRLLRN 359

Query: 1290 QPGEVNIAALKHICSYRRPVFDAYDRLKLVQEWLLKNPKLRKIPKQLDDIVEVRRLAITP 1469
            Q  EVN+AALKHI SYR PV+DAY+RLK V +WLLKNPKL K P QLDDIVE+RRL ITP
Sbjct: 360  QSMEVNVAALKHIYSYRHPVYDAYERLKDVHDWLLKNPKLFKSPPQLDDIVEIRRLVITP 419

Query: 1470 TKAYCLPPEVELSNRVLRNYKEFADRFLRVTFMD 1571
            TKAYCL PEVELSNRVLR YK+ ADRFLRVTFMD
Sbjct: 420  TKAYCLLPEVELSNRVLRKYKDVADRFLRVTFMD 453


>ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine
            max] gi|571449461|ref|XP_006578148.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Glycine
            max]
          Length = 1204

 Score = 1084 bits (2803), Expect = 0.0
 Identities = 529/692 (76%), Positives = 590/692 (85%), Gaps = 7/692 (1%)
 Frame = +2

Query: 1610 SNSFPQKTSVFKRVKAILTDGFHLCGRKYSFLAFSSNQLRDRSAWFFAENDKVSVLDIKS 1789
            SNSF QKT ++KRVK IL +GF+ CGRKYSFLAFSSNQLRDRSAWFFAE DK+   DI++
Sbjct: 480  SNSFSQKTKIYKRVKTILEEGFYFCGRKYSFLAFSSNQLRDRSAWFFAE-DKIRCDDIRN 538

Query: 1790 WMGKFTNRNIAKCAARMGQCFSSTYATVEVSALEVDEELPDINRNGYVFSDGIGMITLDL 1969
            WMGKF  RN+AKCAARMGQCFSSTYATVEV+A EV+  LPD+ RN Y+FSDGIG+IT DL
Sbjct: 539  WMGKFNQRNVAKCAARMGQCFSSTYATVEVAANEVNSMLPDVERNNYIFSDGIGVITHDL 598

Query: 1970 AMEVAEKLKLDVNPPSAYQIRYAGCKGVVACWPGKDDGIRLSLRHSMNKFQSKHTTLEIC 2149
            A EVAEKLKLD N PSAYQIRYAG KGVVA WP K DG+RLSLR SMNKFQS H  LEIC
Sbjct: 599  AREVAEKLKLD-NVPSAYQIRYAGFKGVVASWPAKGDGVRLSLRPSMNKFQSTHNILEIC 657

Query: 2150 SWTRFQPGFLNRQIITLLSTLNVPDEIFWKMQASMVSKLNQMLVDTDVAFDVITASCAEQ 2329
            +WTRFQPGFLNRQIITLLS L VPDEIFW+MQ +M+ KLNQMLVD D+AFDV+T SCAE 
Sbjct: 658  AWTRFQPGFLNRQIITLLSALGVPDEIFWQMQEAMLLKLNQMLVDADIAFDVLTKSCAEH 717

Query: 2330 GNTGAIMLSAGFKPQTEPHLRGMLTCIRAAQLWGLREKARIFVHSGRWLMGCLDELGVLE 2509
            GN  AIMLS GF P TEPHLRGMLT  RAAQLWGLREK+RIFV SGRWLMG LDELGVLE
Sbjct: 718  GNAAAIMLSCGFSPLTEPHLRGMLTSTRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLE 777

Query: 2510 HGQCFIQVSTPSLENCFLKHGSRFSETKKNVEVIKGIVAIAKNPCLHPGDIRILEAVDAP 2689
             GQCF+QVSTPSLENCF KHGSRFSETK N+ V+KG V IAKNPCLHPGD+R+LEAVDAP
Sbjct: 778  QGQCFVQVSTPSLENCFSKHGSRFSETK-NLHVVKGFVVIAKNPCLHPGDVRVLEAVDAP 836

Query: 2690 GLHHLVDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLVPPGKKSWMPMLYDPVEAK 2869
             LHHL DCLVFPQKG+RPHTNEASGSDLDGDLYFVTWDENL+PP K+SW+PM Y P E+K
Sbjct: 837  DLHHLNDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMEYAPQESK 896

Query: 2870 LLTRQVNQVDIIDFFAKNMVNESLGKICNAHVVHADHSEYGAQDEDCLKLAELAATAVDF 3049
            LLTRQV   DII+FF +NMVNE LG ICNAHVVHAD S+YGA DE C+ LAELAATAVDF
Sbjct: 897  LLTRQVMTRDIIEFFVRNMVNEHLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDF 956

Query: 3050 PKTGKLVTMPPHLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDEDLVTSAEQSFV 3229
            PKTGKLVTMPPHLKPKLYPDFMGKE  QSY+SNKILGRLYR+IKDAYDED + +   +FV
Sbjct: 957  PKTGKLVTMPPHLKPKLYPDFMGKERHQSYRSNKILGRLYRHIKDAYDED-IEAPYLNFV 1015

Query: 3230 PGDIPYDKDLEVSGSADFVKVAWDCKCSYAGQLNALMGQYKVSREEEIVTGHVWSMPKYN 3409
             GDIPYDKDLEV GSADF+  AW+ KCSY GQL+ L+GQYKV REEE+VTG +WSMPKYN
Sbjct: 1016 TGDIPYDKDLEVPGSADFIADAWEQKCSYDGQLSGLIGQYKVKREEEVVTGQIWSMPKYN 1075

Query: 3410 SNKQGDLMERLKHAYNALRKEFRLLFEKMDSNLGENSVDEKNRIYEQKASAWYQVTYHPE 3589
            S KQG+L ERLKH+Y+AL+KEFR  FEK++S++GE S +EKN +YEQKASAWYQVTYHPE
Sbjct: 1076 SRKQGELKERLKHSYSALKKEFRYTFEKLNSDVGELSEEEKNLLYEQKASAWYQVTYHPE 1135

Query: 3590 WVKKSLNM-------KEPDGDGEKIILSFAWI 3664
            WVKKSL++       +E D  G  ++LSF WI
Sbjct: 1136 WVKKSLDLQDKSSENQEADSLGSTVMLSFPWI 1167



 Score =  619 bits (1597), Expect = e-174
 Identities = 303/456 (66%), Positives = 367/456 (80%), Gaps = 5/456 (1%)
 Frame = +3

Query: 219  MESEGREEDLVV-QVSLGGFDCYVTAKVLTDYLEDAIGLVWRCRLKTSSTPPESYPNFEI 395
            M+ EG E+  VV Q+S+GGF   V A  L +YLED IGLV+RCRLKTS TPPESYP F+I
Sbjct: 1    MDLEGSEKGSVVTQISIGGFGSEVKASDLLNYLEDKIGLVYRCRLKTSWTPPESYPEFKI 60

Query: 396  VDVNKIQRTDDYKKVEPHAFVHFVSHASVTAAQDAAGRCELFFNDKPLKASFG--NPFLI 569
            +D  KI+RT+DYKKVEPHAFVHF S  SVTAA +A+G C+LF  ++PLK S G  NP+ +
Sbjct: 61   IDTAKIRRTEDYKKVEPHAFVHFASPESVTAALNASGCCDLFLKNQPLKVSCGPKNPYFL 120

Query: 570  NQKTRTTTPYNFKDVYVEIGGLVSRGEYFVAWKGPATGVDFVVDPFDGTCKFLFTKDTVF 749
            NQ+ RTTTP+   DV VEIG LVS GE+FV+W+GP  GV F+VDPFDG C+F F++DT F
Sbjct: 121  NQRRRTTTPFKMSDVLVEIGTLVSPGEFFVSWRGPDKGVKFLVDPFDGMCRFCFSRDTAF 180

Query: 750  SFKGKGKHAVIKCDFKVEFLVRDINEVKEYKDMLSFVILLQLASSPVLYYRTADDDIEES 929
            SFKG  K AVIKCDF+V FLVRDINE++ Y D    V+LL LASSP ++YRTADDDIEES
Sbjct: 181  SFKGIDKKAVIKCDFQVGFLVRDINEIRRYNDTSYLVVLLHLASSPWVWYRTADDDIEES 240

Query: 930  ATFDLMDDEDPWIRTTDFTPSGAIGRCNTYKISIPARHGRRLKEAMDYLRRQRVPVGK-- 1103
              FDL+DD+DPWIRTTDFTPSGAIGRCN Y+ISIP RHG +L +AM YL+ QRV + +  
Sbjct: 241  VPFDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMLYLKGQRVQIQELP 300

Query: 1104 LWQQLMIWNEPDFGMPVSDPFFCIQHETGITFDVLFLVNAVMHKGIINQHQLSERFYNLL 1283
            L Q L   NEPDFGMP+SD FF +  +  I FD++FLVNA++HKGI NQH+LS+RF+ LL
Sbjct: 301  LKQTLRTQNEPDFGMPMSDAFFYVHFQKDIAFDIMFLVNAIVHKGIFNQHRLSDRFFELL 360

Query: 1284 RSQPGEVNIAALKHICSYRRPVFDAYDRLKLVQEWLLKNPKLRKIPKQLDDIVEVRRLAI 1463
            R+QP E+N+AALKH+CSY+RPVFDA  RLK+VQEWLL+NPKL +I KQLDDIVEVRRL +
Sbjct: 361  RNQPKELNVAALKHLCSYKRPVFDATKRLKIVQEWLLRNPKLYQISKQLDDIVEVRRLVV 420

Query: 1464 TPTKAYCLPPEVELSNRVLRNYKEFADRFLRVTFMD 1571
            TP+KAYC+PPEVELSNRVLR ++E +D FLRVTFMD
Sbjct: 421  TPSKAYCIPPEVELSNRVLRKFREVSDCFLRVTFMD 456


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score = 1079 bits (2791), Expect = 0.0
 Identities = 517/685 (75%), Positives = 588/685 (85%)
 Frame = +2

Query: 1610 SNSFPQKTSVFKRVKAILTDGFHLCGRKYSFLAFSSNQLRDRSAWFFAENDKVSVLDIKS 1789
            SNS PQ+T++F+RVK+IL+ GFHLCGRKYSFLAFS+NQLRDRSAWFFAE+ K+ V  I S
Sbjct: 478  SNSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIIS 537

Query: 1790 WMGKFTNRNIAKCAARMGQCFSSTYATVEVSALEVDEELPDINRNGYVFSDGIGMITLDL 1969
            WMG+F+NRN+AKCAARMGQCFSSTYATVEV + EV+ ELPDI RNGYVFSDGIGMI+ DL
Sbjct: 538  WMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADL 597

Query: 1970 AMEVAEKLKLDVNPPSAYQIRYAGCKGVVACWPGKDDGIRLSLRHSMNKFQSKHTTLEIC 2149
            A+EVAEKL L VNPPSAYQIRYAGCKGVVACWP K+DGI LSLR SM KF S HT LEIC
Sbjct: 598  ALEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEIC 657

Query: 2150 SWTRFQPGFLNRQIITLLSTLNVPDEIFWKMQASMVSKLNQMLVDTDVAFDVITASCAEQ 2329
            SWTRFQPGFLNRQI+TLLS+L+V D IFW+MQ  M+S LN+MLVD+DVAFDVITASCAE 
Sbjct: 658  SWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLNKMLVDSDVAFDVITASCAEA 717

Query: 2330 GNTGAIMLSAGFKPQTEPHLRGMLTCIRAAQLWGLREKARIFVHSGRWLMGCLDELGVLE 2509
            GNT AIMLSAGFKPQ+EPHLRGML+ IRA+QL  LR KARIFV SGRWLMGCLDELG LE
Sbjct: 718  GNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELE 777

Query: 2510 HGQCFIQVSTPSLENCFLKHGSRFSETKKNVEVIKGIVAIAKNPCLHPGDIRILEAVDAP 2689
             GQCFIQVS+PSLENCF+KHG +FS+ KKN++V+KG+V IAKNPCLHPGD+RILEAVD P
Sbjct: 778  QGQCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVP 837

Query: 2690 GLHHLVDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLVPPGKKSWMPMLYDPVEAK 2869
            GLHHL DCLVFPQKG+RPH+NEASGSDLDGDLYFVTWDENL+PP KKSW+PM Y+P E K
Sbjct: 838  GLHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVK 897

Query: 2870 LLTRQVNQVDIIDFFAKNMVNESLGKICNAHVVHADHSEYGAQDEDCLKLAELAATAVDF 3049
             L RQVN +DIIDFF+KNMV ESLG+ICNAHVVHAD SE+GA DE CLKLAELAA AVDF
Sbjct: 898  QLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDF 957

Query: 3050 PKTGKLVTMPPHLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDEDLVTSAEQSFV 3229
            PKTGKLVTMP  LKPK+YPDFMGKEEFQSYKS KILG+LYR +KD  D +   SA    V
Sbjct: 958  PKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELV 1017

Query: 3230 PGDIPYDKDLEVSGSADFVKVAWDCKCSYAGQLNALMGQYKVSREEEIVTGHVWSMPKYN 3409
            P DIPYD  LE+ GS  F+  AW+CKCSY GQL+ L+GQYKV+REEE+VTGH+WSMPKY+
Sbjct: 1018 PNDIPYDSSLEIPGSTVFMGDAWNCKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYS 1077

Query: 3410 SNKQGDLMERLKHAYNALRKEFRLLFEKMDSNLGENSVDEKNRIYEQKASAWYQVTYHPE 3589
            + KQG+L ERLKHAYN LRKEFR +FE+MD +      DEKN +YE+KASAWYQVTY+P 
Sbjct: 1078 AKKQGELKERLKHAYNMLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPH 1137

Query: 3590 WVKKSLNMKEPDGDGEKIILSFAWI 3664
            WV +SL ++ PD     ++LSFAWI
Sbjct: 1138 WVARSLELQLPDAVSSTVMLSFAWI 1162



 Score =  570 bits (1469), Expect = e-159
 Identities = 285/456 (62%), Positives = 353/456 (77%), Gaps = 5/456 (1%)
 Frame = +3

Query: 219  MESEGREEDLVV-QVSLGGFDCYVTAKVLTDYLEDAIGLVWRCRLKTSSTPPESYPNFEI 395
            M SEG E+DLVV Q+S+GGFD  V AK+L++YLE+ +G VWRCRLK S+TPP+SYP ++ 
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYD- 59

Query: 396  VDVNKIQRTDDYKKVEPHAFVHFVSHASVTAAQDAAGRCELFFNDKPLKASFG--NPFLI 569
            VD  ++ R  DY+KV PHAFVHF S  S   A  AAG   L    KPL  S G  NP+ +
Sbjct: 60   VDAARVHRMKDYEKVVPHAFVHFASSESAKYALAAAGGNGLILGKKPLIVSLGPENPYRL 119

Query: 570  NQKTRTTTPYNFKDVYVEIGGLVSRGEYFVAWKGPATGVDFVVDPFDGTCKFLFTKDTVF 749
            NQ+ RTT P+ F DV VE+G LVS+ ++ V W+GP TGVDF VDPF+G CK LFTKDT F
Sbjct: 120  NQRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACKILFTKDTAF 179

Query: 750  SFKGKGKHAVIKCDFKVEFLVRDINEVKEYKDMLSFVILLQLASSPVLYYRTADDDIEES 929
            SF+G+ KHA+IKC+FK+EF+VR+INE+K++KD  S VILLQLASSP+++YRTADDDIEES
Sbjct: 180  SFRGEAKHAIIKCNFKIEFMVREINEIKKFKDFTSLVILLQLASSPLVFYRTADDDIEES 239

Query: 930  ATFDLMDDEDPWIRTTDFTPSGAIGRCNTYKISIPARHGRRLKEAMDYLRRQRVPVGKLW 1109
              FDL+DD+D WIRTTD T SGAIGRCNTY+ISI  R+G   ++AM Y    RVP+ ++ 
Sbjct: 240  VAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMC 299

Query: 1110 --QQLMIWNEPDFGMPVSDPFFCIQHETGITFDVLFLVNAVMHKGIINQHQLSERFYNLL 1283
              + L + +EPDFG+ +SDPFFC Q+E GI+F V+FLVNAV+HKGI+NQHQ++  F+ LL
Sbjct: 300  NRKMLRVRDEPDFGVSMSDPFFCFQNE-GISFKVMFLVNAVLHKGIVNQHQMTNEFFYLL 358

Query: 1284 RSQPGEVNIAALKHICSYRRPVFDAYDRLKLVQEWLLKNPKLRKIPKQLDDIVEVRRLAI 1463
            RS   EVN+AALKH+ SY+ PV DA  +L  +Q+WLLKNPKL +   +LDDIVEVRRL I
Sbjct: 359  RSHQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVI 418

Query: 1464 TPTKAYCLPPEVELSNRVLRNYKEFADRFLRVTFMD 1571
            TPTKAYCLPP VELSNRVLRNYK  ADRFLRVTFMD
Sbjct: 419  TPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMD 454


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score = 1075 bits (2781), Expect = 0.0
 Identities = 514/685 (75%), Positives = 588/685 (85%)
 Frame = +2

Query: 1610 SNSFPQKTSVFKRVKAILTDGFHLCGRKYSFLAFSSNQLRDRSAWFFAENDKVSVLDIKS 1789
            SNS PQ+T++F+RVK+IL+ GFHLCGRKYSFLAFS+NQLRDRSAWFFAE+ K+ V  I S
Sbjct: 478  SNSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIIS 537

Query: 1790 WMGKFTNRNIAKCAARMGQCFSSTYATVEVSALEVDEELPDINRNGYVFSDGIGMITLDL 1969
            WMG+F+NRN+AKCAARMGQCFSSTYATVEV + EV+ ELPDI RNGYVFSDGIGMI+ DL
Sbjct: 538  WMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADL 597

Query: 1970 AMEVAEKLKLDVNPPSAYQIRYAGCKGVVACWPGKDDGIRLSLRHSMNKFQSKHTTLEIC 2149
            A+EVAEKL L VNPPSAYQIRYAGCKGVVACWP K+DGIRLSLR SM KF S HT LEIC
Sbjct: 598  AVEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEIC 657

Query: 2150 SWTRFQPGFLNRQIITLLSTLNVPDEIFWKMQASMVSKLNQMLVDTDVAFDVITASCAEQ 2329
            SWTRFQPGFLNRQI+TLLS+L+V D IFW+MQ  M+S L++MLVD+DVAFDVITASCAE 
Sbjct: 658  SWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEA 717

Query: 2330 GNTGAIMLSAGFKPQTEPHLRGMLTCIRAAQLWGLREKARIFVHSGRWLMGCLDELGVLE 2509
            GNT AIMLSAGFKPQ+EPHLRGML+ IRA+QL  LR KARIFV SGRWLMGCLDELG LE
Sbjct: 718  GNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELE 777

Query: 2510 HGQCFIQVSTPSLENCFLKHGSRFSETKKNVEVIKGIVAIAKNPCLHPGDIRILEAVDAP 2689
             GQCFIQVS+PSLENCF+KHG +FS+ KKN++V+KG+V IAKNPCLHPGD+RILEAVD P
Sbjct: 778  QGQCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVP 837

Query: 2690 GLHHLVDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLVPPGKKSWMPMLYDPVEAK 2869
            GLHHL DCLVFPQKG+RPH+NEASGSDLDGDLYFVTWDENL+PP KKSW+PM Y+P E K
Sbjct: 838  GLHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVK 897

Query: 2870 LLTRQVNQVDIIDFFAKNMVNESLGKICNAHVVHADHSEYGAQDEDCLKLAELAATAVDF 3049
             + RQVN +DIIDFF+KNMV ESLG+ICNAHVVHAD SE+GA DE CLKLAELAA AVDF
Sbjct: 898  QMGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDF 957

Query: 3050 PKTGKLVTMPPHLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDEDLVTSAEQSFV 3229
            PKTGKLVTMP  LKPK+YPDFMGKEEFQSYKS KILG+LYR +KD  D +   SA    V
Sbjct: 958  PKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELV 1017

Query: 3230 PGDIPYDKDLEVSGSADFVKVAWDCKCSYAGQLNALMGQYKVSREEEIVTGHVWSMPKYN 3409
            P DIPYD  LE+ GS  F+  AW+ KCSY GQL+ L+GQYKV+REEE+VTGH+WSMPKY+
Sbjct: 1018 PNDIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYS 1077

Query: 3410 SNKQGDLMERLKHAYNALRKEFRLLFEKMDSNLGENSVDEKNRIYEQKASAWYQVTYHPE 3589
            + KQG+L ERLKHAYN LRKEFR +FE+M+ +      DEKN +YE+KASAWYQVTY+P 
Sbjct: 1078 AKKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYNPH 1137

Query: 3590 WVKKSLNMKEPDGDGEKIILSFAWI 3664
            WV +SL ++ PD     ++LSFAWI
Sbjct: 1138 WVARSLELQLPDAVSSTVMLSFAWI 1162



 Score =  574 bits (1480), Expect = e-161
 Identities = 287/456 (62%), Positives = 355/456 (77%), Gaps = 5/456 (1%)
 Frame = +3

Query: 219  MESEGREEDLVV-QVSLGGFDCYVTAKVLTDYLEDAIGLVWRCRLKTSSTPPESYPNFEI 395
            M SEG E+DLVV Q+S+GGFD  V AK+L++YLE+ +G VWRCRLK SSTPP+SYP F+ 
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTFD- 59

Query: 396  VDVNKIQRTDDYKKVEPHAFVHFVSHASVTAAQDAAGRCELFFNDKPLKASFG--NPFLI 569
            VD  ++QR  DY+KV PHAFVHF S  S   A  AAG  EL    KPL  S G  NP+ +
Sbjct: 60   VDAERVQRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRL 119

Query: 570  NQKTRTTTPYNFKDVYVEIGGLVSRGEYFVAWKGPATGVDFVVDPFDGTCKFLFTKDTVF 749
            NQ+ RTT P+ F DV +E+G LVS+ ++ V W+GP TGVDF+VDPF+G CK LFTKDT F
Sbjct: 120  NQRRRTTMPFKFSDVSIEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGACKILFTKDTAF 179

Query: 750  SFKGKGKHAVIKCDFKVEFLVRDINEVKEYKDMLSFVILLQLASSPVLYYRTADDDIEES 929
            SF+G+ +HA+IKC+FK+EFLVR+INE+K+ KD  S VILLQLASSP+++YRTADDDIEES
Sbjct: 180  SFRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEES 239

Query: 930  ATFDLMDDEDPWIRTTDFTPSGAIGRCNTYKISIPARHGRRLKEAMDYLRRQRVPVGKLW 1109
              FDL+DD+D WIRTTD T SGAIGRCNTY+ISI  R+G   ++AM Y    RVP+ ++ 
Sbjct: 240  VAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMC 299

Query: 1110 --QQLMIWNEPDFGMPVSDPFFCIQHETGITFDVLFLVNAVMHKGIINQHQLSERFYNLL 1283
              + L + +EPDFG+ +SDPFFC Q+E GI+F V+FLVNAV+HKGI+NQHQ++  F+ LL
Sbjct: 300  NRKMLRVRDEPDFGVSMSDPFFCFQNE-GISFKVMFLVNAVLHKGIVNQHQMTNEFFYLL 358

Query: 1284 RSQPGEVNIAALKHICSYRRPVFDAYDRLKLVQEWLLKNPKLRKIPKQLDDIVEVRRLAI 1463
            RS   EVN+AALKH+ SY+ PV DA  +L  +++WLLKNPKL +   +LDDIVEVRRL I
Sbjct: 359  RSHQEEVNLAALKHMFSYKWPVNDAIQKLVGIRKWLLKNPKLLERTGELDDIVEVRRLVI 418

Query: 1464 TPTKAYCLPPEVELSNRVLRNYKEFADRFLRVTFMD 1571
            TPTKAYCLPP VELSNRVLRNYK  ADRFLRVTFMD
Sbjct: 419  TPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMD 454


>ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine
            max] gi|571459266|ref|XP_006581359.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Glycine
            max]
          Length = 1204

 Score = 1072 bits (2771), Expect(2) = 0.0
 Identities = 524/692 (75%), Positives = 584/692 (84%), Gaps = 7/692 (1%)
 Frame = +2

Query: 1610 SNSFPQKTSVFKRVKAILTDGFHLCGRKYSFLAFSSNQLRDRSAWFFAENDKVSVLDIKS 1789
            SNSF Q+T ++KRVK IL  GF+ CGRKYSFLAFSSNQLRDRSAWFFAE DK+   DI++
Sbjct: 480  SNSFSQRTKIYKRVKTILEQGFYFCGRKYSFLAFSSNQLRDRSAWFFAE-DKIRCDDIRN 538

Query: 1790 WMGKFTNRNIAKCAARMGQCFSSTYATVEVSALEVDEELPDINRNGYVFSDGIGMITLDL 1969
            WMGKF  RN+AKCAARMGQCFSSTYATVEV+A EV+  LPD+ RN Y+FSDGIG+IT DL
Sbjct: 539  WMGKFNQRNVAKCAARMGQCFSSTYATVEVAANEVNSMLPDVERNNYIFSDGIGVITHDL 598

Query: 1970 AMEVAEKLKLDVNPPSAYQIRYAGCKGVVACWPGKDDGIRLSLRHSMNKFQSKHTTLEIC 2149
            A EVAEKLKLD N PSAYQIRYAG KGVVA WP K DG+RLSLR SMNKFQS H  LEIC
Sbjct: 599  AREVAEKLKLD-NVPSAYQIRYAGFKGVVASWPAKGDGVRLSLRPSMNKFQSTHNILEIC 657

Query: 2150 SWTRFQPGFLNRQIITLLSTLNVPDEIFWKMQASMVSKLNQMLVDTDVAFDVITASCAEQ 2329
            +WTRFQPGFLNRQIITLLS L VPDE+FW+MQ +M+ KLNQMLVD D+AFDV+T SCAE 
Sbjct: 658  AWTRFQPGFLNRQIITLLSALGVPDEVFWQMQEAMLLKLNQMLVDADIAFDVLTKSCAEH 717

Query: 2330 GNTGAIMLSAGFKPQTEPHLRGMLTCIRAAQLWGLREKARIFVHSGRWLMGCLDELGVLE 2509
            GN  AIMLS GF P TEPHLRGMLT  RAAQLWGLREK+RIFV SGRWLMG LDE GVLE
Sbjct: 718  GNAAAIMLSCGFSPLTEPHLRGMLTSTRAAQLWGLREKSRIFVSSGRWLMGVLDESGVLE 777

Query: 2510 HGQCFIQVSTPSLENCFLKHGSRFSETKKNVEVIKGIVAIAKNPCLHPGDIRILEAVDAP 2689
             GQCF+QVSTPSLENCF KHGSRFSETK N+ V+KG V IAKNPCLHPGD+R+LEAVDAP
Sbjct: 778  QGQCFVQVSTPSLENCFSKHGSRFSETK-NLHVVKGFVIIAKNPCLHPGDVRVLEAVDAP 836

Query: 2690 GLHHLVDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLVPPGKKSWMPMLYDPVEAK 2869
             LHHL DCLVFPQKG+RPHTNEASGSDLDGDLYFVTWDENL+PP K+SW+PM Y P E+K
Sbjct: 837  DLHHLNDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMEYAPQESK 896

Query: 2870 LLTRQVNQVDIIDFFAKNMVNESLGKICNAHVVHADHSEYGAQDEDCLKLAELAATAVDF 3049
            L TRQV   DII+FF +NMVNE LG ICNAHVVHAD S+YGA DE C+ LAELAATAVDF
Sbjct: 897  LKTRQVMTRDIIEFFVRNMVNEHLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDF 956

Query: 3050 PKTGKLVTMPPHLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDEDLVTSAEQSFV 3229
            PKTGKLVTMPPHLKPKLYPDFMGKE  QSY+S KILGRLYR IKDAYDED + +   +FV
Sbjct: 957  PKTGKLVTMPPHLKPKLYPDFMGKERHQSYRSKKILGRLYRRIKDAYDED-IDAPYLNFV 1015

Query: 3230 PGDIPYDKDLEVSGSADFVKVAWDCKCSYAGQLNALMGQYKVSREEEIVTGHVWSMPKYN 3409
             GDIPYDKDLEV GSADF+  AW+ KCSY GQL+ L+GQYKV REEE+VTG +WSMPKYN
Sbjct: 1016 TGDIPYDKDLEVPGSADFIADAWEQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPKYN 1075

Query: 3410 SNKQGDLMERLKHAYNALRKEFRLLFEKMDSNLGENSVDEKNRIYEQKASAWYQVTYHPE 3589
            S KQG+L ERLKH+Y+AL+KEFR  FEK++S++GE S +EKN  YEQKASAWYQVTYHPE
Sbjct: 1076 SRKQGELKERLKHSYSALKKEFRHTFEKLNSDVGELSEEEKNLFYEQKASAWYQVTYHPE 1135

Query: 3590 WVKKSLNM-------KEPDGDGEKIILSFAWI 3664
            WVKKSL++       +E D  G  ++LSF WI
Sbjct: 1136 WVKKSLDLQDKSSENQEADSLGSTVMLSFPWI 1167



 Score =  618 bits (1593), Expect(2) = 0.0
 Identities = 304/456 (66%), Positives = 366/456 (80%), Gaps = 5/456 (1%)
 Frame = +3

Query: 219  MESEGREEDLVV-QVSLGGFDCYVTAKVLTDYLEDAIGLVWRCRLKTSSTPPESYPNFEI 395
            M+ EG E+D VV Q+S+GGF   V A  L +YLED IGLV+RCRLKTS TPPESYP F I
Sbjct: 1    MDLEGSEKDSVVTQISIGGFGSEVKASDLVNYLEDKIGLVYRCRLKTSWTPPESYPEFNI 60

Query: 396  VDVNKIQRTDDYKKVEPHAFVHFVSHASVTAAQDAAGRCELFFNDKPLKASFG--NPFLI 569
            +D   I+RTD+YKKVEPHAFVHF S  SVTAA +A+G C+LF  ++PLK S G  NP+ +
Sbjct: 61   IDTANIRRTDNYKKVEPHAFVHFASPESVTAALNASGCCDLFLKNQPLKVSCGPENPYFL 120

Query: 570  NQKTRTTTPYNFKDVYVEIGGLVSRGEYFVAWKGPATGVDFVVDPFDGTCKFLFTKDTVF 749
            NQ+ RTTTP+   DV VEIG LVS GE+FV+W+GP  GV F+VDPFDG C+F F++DT F
Sbjct: 121  NQRRRTTTPFKMSDVLVEIGTLVSPGEFFVSWRGPDKGVKFLVDPFDGMCRFCFSRDTAF 180

Query: 750  SFKGKGKHAVIKCDFKVEFLVRDINEVKEYKDMLSFVILLQLASSPVLYYRTADDDIEES 929
            SFKG  K AVIKCDF+V FLVRDINE+K Y D    V+LL LASSP ++YRTADDDIEES
Sbjct: 181  SFKGIEKKAVIKCDFQVGFLVRDINEIKRYNDTSYLVVLLHLASSPWVWYRTADDDIEES 240

Query: 930  ATFDLMDDEDPWIRTTDFTPSGAIGRCNTYKISIPARHGRRLKEAMDYLRRQRVPVGK-- 1103
              FDL+DD+DPWIRTTDFTPSGAIGRCN Y+ISIP RHG +L +AM YL+ QRV + +  
Sbjct: 241  VPFDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMLYLKGQRVQMQELA 300

Query: 1104 LWQQLMIWNEPDFGMPVSDPFFCIQHETGITFDVLFLVNAVMHKGIINQHQLSERFYNLL 1283
            L Q L   NEPDFG+P+SD FF I  +  I FD++FLVNA++HKGI NQH+LS+RF+ LL
Sbjct: 301  LKQTLRTLNEPDFGVPMSDAFFYIHFQKDIAFDIMFLVNAIVHKGIFNQHRLSDRFFELL 360

Query: 1284 RSQPGEVNIAALKHICSYRRPVFDAYDRLKLVQEWLLKNPKLRKIPKQLDDIVEVRRLAI 1463
            ++QP E+N+AALKH+CSY+RPVFDA  RLK+VQEWLL+NPKL +I KQLDDIVEVRRL I
Sbjct: 361  KNQPKELNVAALKHLCSYKRPVFDATKRLKIVQEWLLRNPKLYQISKQLDDIVEVRRLVI 420

Query: 1464 TPTKAYCLPPEVELSNRVLRNYKEFADRFLRVTFMD 1571
            TP+KAYC+PPEVELSNRVLR ++E +D FLRVTFMD
Sbjct: 421  TPSKAYCIPPEVELSNRVLRKFREVSDCFLRVTFMD 456


>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score = 1071 bits (2770), Expect(2) = 0.0
 Identities = 512/685 (74%), Positives = 587/685 (85%)
 Frame = +2

Query: 1610 SNSFPQKTSVFKRVKAILTDGFHLCGRKYSFLAFSSNQLRDRSAWFFAENDKVSVLDIKS 1789
            SNS PQ+T++F+RVK+IL+ GFHLCGRKYSFLAFS+NQLRDRSAWFFAE+ K+ V  I S
Sbjct: 478  SNSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIIS 537

Query: 1790 WMGKFTNRNIAKCAARMGQCFSSTYATVEVSALEVDEELPDINRNGYVFSDGIGMITLDL 1969
            WMG+F+NRN+AKCAARMGQCFSSTYATVEV + EV+ ELPDI RNGYVFSDGIGMI+ DL
Sbjct: 538  WMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADL 597

Query: 1970 AMEVAEKLKLDVNPPSAYQIRYAGCKGVVACWPGKDDGIRLSLRHSMNKFQSKHTTLEIC 2149
            A+EVAEKL L VNPP+AYQIRYAGCKGVVACWP K+DGIRLSLR SM KF S HT LEIC
Sbjct: 598  AIEVAEKLHLSVNPPAAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEIC 657

Query: 2150 SWTRFQPGFLNRQIITLLSTLNVPDEIFWKMQASMVSKLNQMLVDTDVAFDVITASCAEQ 2329
            SWTRFQPGFLNRQI+TLLS+L+V D IFW+MQ  M++ L++MLVD+DVAFDVITASCAE 
Sbjct: 658  SWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAFDVITASCAEA 717

Query: 2330 GNTGAIMLSAGFKPQTEPHLRGMLTCIRAAQLWGLREKARIFVHSGRWLMGCLDELGVLE 2509
            GNT A+MLSAGFKPQ+EPHLRGML+ IRA+QL  LR KARIFV SGRWLMGCLDELG LE
Sbjct: 718  GNTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELE 777

Query: 2510 HGQCFIQVSTPSLENCFLKHGSRFSETKKNVEVIKGIVAIAKNPCLHPGDIRILEAVDAP 2689
             GQCFIQVS+PSLENCF+KHGS+FS+ KKN++V+KG+V IAKNPCLHPGD+RILEAVD P
Sbjct: 778  QGQCFIQVSSPSLENCFVKHGSKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVP 837

Query: 2690 GLHHLVDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLVPPGKKSWMPMLYDPVEAK 2869
             L HL DCLVFPQKG+RPH+NEASGSDLDGDLYFVTWDEN++PP KKSW+PM Y+P E K
Sbjct: 838  SLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENIIPPSKKSWIPMNYEPAEVK 897

Query: 2870 LLTRQVNQVDIIDFFAKNMVNESLGKICNAHVVHADHSEYGAQDEDCLKLAELAATAVDF 3049
             L RQVN +DIIDFF+KNMV ESLG+ICNAHVVHAD SE+GA DE CLKLAELAA AVDF
Sbjct: 898  QLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDF 957

Query: 3050 PKTGKLVTMPPHLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDEDLVTSAEQSFV 3229
            PKTGKLVTMP  LKPK+YPDFMGKEEFQSYKS KILG+LYR +KD  D +   SA    V
Sbjct: 958  PKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVV 1017

Query: 3230 PGDIPYDKDLEVSGSADFVKVAWDCKCSYAGQLNALMGQYKVSREEEIVTGHVWSMPKYN 3409
            P DIPYD  LE+ GS  F+  AW+ KCSY GQLN L+GQYKV+REEE+VTGH+WSMPKY+
Sbjct: 1018 PKDIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYS 1077

Query: 3410 SNKQGDLMERLKHAYNALRKEFRLLFEKMDSNLGENSVDEKNRIYEQKASAWYQVTYHPE 3589
            + KQG+L ERLKHAYN LRKEFR +FE+M+ +      DEKN +YE+KASAWYQVTYHP 
Sbjct: 1078 AKKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPH 1137

Query: 3590 WVKKSLNMKEPDGDGEKIILSFAWI 3664
            WV +SL ++ PD     ++LSFAWI
Sbjct: 1138 WVARSLELQIPDAVSSTVMLSFAWI 1162



 Score =  575 bits (1481), Expect(2) = 0.0
 Identities = 288/456 (63%), Positives = 357/456 (78%), Gaps = 5/456 (1%)
 Frame = +3

Query: 219  MESEGREEDLVV-QVSLGGFDCYVTAKVLTDYLEDAIGLVWRCRLKTSSTPPESYPNFEI 395
            M SEG E++LVV Q+S+GGFD  V AK+L++YLE+ +G VWRCRLK SSTPP+SYP ++I
Sbjct: 1    MGSEGSEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 396  VDVNKIQRTDDYKKVEPHAFVHFVSHASVTAAQDAAGRCELFFNDKPLKASFG--NPFLI 569
             D  ++QR ++Y+KV PHAFVHF S  S   A  AAG  EL    KPL  S G  NP+ +
Sbjct: 61   -DAERVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELVLGKKPLIVSLGPENPYRL 119

Query: 570  NQKTRTTTPYNFKDVYVEIGGLVSRGEYFVAWKGPATGVDFVVDPFDGTCKFLFTKDTVF 749
            NQ+ RTT P+ F DV VE+G LVS+ ++ V W+GP TGVDF+VDPF+GTCK LFTKDTVF
Sbjct: 120  NQRRRTTMPFKFSDVSVEMGVLVSKHDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTVF 179

Query: 750  SFKGKGKHAVIKCDFKVEFLVRDINEVKEYKDMLSFVILLQLASSPVLYYRTADDDIEES 929
            SF+G+ +HA+IKC+FK+EFLVR+INE+K+ KD +S VILLQLASSP+++YRTADDDIEES
Sbjct: 180  SFRGEARHAIIKCNFKIEFLVREINEIKKCKDFMSLVILLQLASSPLVFYRTADDDIEES 239

Query: 930  ATFDLMDDEDPWIRTTDFTPSGAIGRCNTYKISIPARHGRRLKEAMDYLRRQRVPVGKLW 1109
              FDL+DD+D WIRTTD T SGAIGRCNTY+ISI  R+G   ++AM Y    RVP+ ++ 
Sbjct: 240  VAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMC 299

Query: 1110 --QQLMIWNEPDFGMPVSDPFFCIQHETGITFDVLFLVNAVMHKGIINQHQLSERFYNLL 1283
              + L + +EPDFG+ +SDPFFC Q+E GI+F VLFL NAV+HKGI+NQHQ+   F+ LL
Sbjct: 300  NRKMLRVRDEPDFGVSMSDPFFCFQNE-GISFKVLFLANAVLHKGIVNQHQMINEFFYLL 358

Query: 1284 RSQPGEVNIAALKHICSYRRPVFDAYDRLKLVQEWLLKNPKLRKIPKQLDDIVEVRRLAI 1463
            RS   EVN+AALKH+ SY+ PV DA  +L  +Q+WLLKNPKL +   +LDDIVEVRRL I
Sbjct: 359  RSHQEEVNLAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLERTGELDDIVEVRRLVI 418

Query: 1464 TPTKAYCLPPEVELSNRVLRNYKEFADRFLRVTFMD 1571
            TPTKAYCLPP VELSNRVLRNYK  ADRFLRVTFMD
Sbjct: 419  TPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMD 454


>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1071 bits (2770), Expect(2) = 0.0
 Identities = 514/685 (75%), Positives = 586/685 (85%)
 Frame = +2

Query: 1610 SNSFPQKTSVFKRVKAILTDGFHLCGRKYSFLAFSSNQLRDRSAWFFAENDKVSVLDIKS 1789
            SNS PQ+T++F+RVK+IL+ GFHLCGRKYSFLAFS+NQLRDRSAWFFAE+ K+ V  I S
Sbjct: 478  SNSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIIS 537

Query: 1790 WMGKFTNRNIAKCAARMGQCFSSTYATVEVSALEVDEELPDINRNGYVFSDGIGMITLDL 1969
            WMG+F+NRN+AKCAARMGQCFSSTYATVEV + EV+ ELPDI RNGYVFSDGIGMI+ DL
Sbjct: 538  WMGRFSNRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADL 597

Query: 1970 AMEVAEKLKLDVNPPSAYQIRYAGCKGVVACWPGKDDGIRLSLRHSMNKFQSKHTTLEIC 2149
            A+EVAEKL L VNPPSAYQIRYAGCKGVVACWP K+DGIRLSLR SM KF S HT LEIC
Sbjct: 598  AIEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEIC 657

Query: 2150 SWTRFQPGFLNRQIITLLSTLNVPDEIFWKMQASMVSKLNQMLVDTDVAFDVITASCAEQ 2329
            SWTRFQPGFLNRQI+TLLS+L+V D IFW+MQ  M+S L++MLVD+DVAFDVITASCAE 
Sbjct: 658  SWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEA 717

Query: 2330 GNTGAIMLSAGFKPQTEPHLRGMLTCIRAAQLWGLREKARIFVHSGRWLMGCLDELGVLE 2509
            GNT AIMLSAGFKPQ+EPHLRGML+ IRA+QL  LR KARIFV SGRWLMGCLDELG LE
Sbjct: 718  GNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELE 777

Query: 2510 HGQCFIQVSTPSLENCFLKHGSRFSETKKNVEVIKGIVAIAKNPCLHPGDIRILEAVDAP 2689
             GQCFIQVS+PSLENCF+KHG +FS+ K+N++V+KG+V IAKNPCLHPGD+RILEAVD P
Sbjct: 778  QGQCFIQVSSPSLENCFVKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVP 837

Query: 2690 GLHHLVDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLVPPGKKSWMPMLYDPVEAK 2869
             L HL DCLVFPQKG+RPH+NEASGSDLDGDLYFVTWDENL+PP KKSW+PM Y+P E K
Sbjct: 838  SLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVK 897

Query: 2870 LLTRQVNQVDIIDFFAKNMVNESLGKICNAHVVHADHSEYGAQDEDCLKLAELAATAVDF 3049
             L RQVN +DIIDFF+KNMV ESLG+ICNAHVVHAD SE+GA DE CLKLAELAA AVDF
Sbjct: 898  QLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDF 957

Query: 3050 PKTGKLVTMPPHLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDEDLVTSAEQSFV 3229
            PKTGKLVTMP  LKPK+YPDFMGKEEFQSYKS KILG+LYR +KD  D +   SA    V
Sbjct: 958  PKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVV 1017

Query: 3230 PGDIPYDKDLEVSGSADFVKVAWDCKCSYAGQLNALMGQYKVSREEEIVTGHVWSMPKYN 3409
            P DIPYD  LE+ GS  F+  AW+ KCSY GQL+ L+GQYKV+REEE+VTGH+WSMPKY+
Sbjct: 1018 PKDIPYDSTLEILGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYS 1077

Query: 3410 SNKQGDLMERLKHAYNALRKEFRLLFEKMDSNLGENSVDEKNRIYEQKASAWYQVTYHPE 3589
            + KQG+L ERLKHAYN LRKEFR +FE+MD +      DEKN +YE+KASAWYQVTYHP 
Sbjct: 1078 AKKQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYHPH 1137

Query: 3590 WVKKSLNMKEPDGDGEKIILSFAWI 3664
            WV +SL ++ PD     ++LSFAWI
Sbjct: 1138 WVARSLELQLPDAVSNTVMLSFAWI 1162



 Score =  570 bits (1469), Expect(2) = 0.0
 Identities = 287/456 (62%), Positives = 354/456 (77%), Gaps = 5/456 (1%)
 Frame = +3

Query: 219  MESEGREEDLVV-QVSLGGFDCYVTAKVLTDYLEDAIGLVWRCRLKTSSTPPESYPNFEI 395
            M SEG E++LVV Q+S GGFD  V AK+L++YLE+ +G VWRCRLK SSTPP+SYP ++I
Sbjct: 1    MGSEGSEKELVVTQISGGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 396  VDVNKIQRTDDYKKVEPHAFVHFVSHASVTAAQDAAGRCELFFNDKPLKASFG--NPFLI 569
             D  K+QR ++Y+KV PHAFVHF S  S   A  AAG  EL    KPL  S G  NP+ +
Sbjct: 61   -DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRL 119

Query: 570  NQKTRTTTPYNFKDVYVEIGGLVSRGEYFVAWKGPATGVDFVVDPFDGTCKFLFTKDTVF 749
            NQ+ RTT P+ F DV VE+G LVS+ ++ V W+GP TGVDF VDPF+GTCK LFTKDT F
Sbjct: 120  NQRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGTCKILFTKDTAF 179

Query: 750  SFKGKGKHAVIKCDFKVEFLVRDINEVKEYKDMLSFVILLQLASSPVLYYRTADDDIEES 929
            SF+G+ +HA+IKC+FK+EF+VR+INE+K+ KD  S VILLQLASSP+++YRTADDDIEES
Sbjct: 180  SFRGEARHAIIKCNFKIEFMVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEES 239

Query: 930  ATFDLMDDEDPWIRTTDFTPSGAIGRCNTYKISIPARHGRRLKEAMDYLRRQRVPVGKLW 1109
              FDL+DD+D WIRTTD T SGAIGRCNTY+ISI  R+G   ++AM Y    RVP+ ++ 
Sbjct: 240  VAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMC 299

Query: 1110 --QQLMIWNEPDFGMPVSDPFFCIQHETGITFDVLFLVNAVMHKGIINQHQLSERFYNLL 1283
              + L + +EPDFG+ +SDPFFC Q+E GI+F V+FLVNAV+HKGI+NQHQ++  F+ LL
Sbjct: 300  NRKMLRVKDEPDFGVSMSDPFFCFQNE-GISFKVMFLVNAVLHKGIVNQHQMTNEFFYLL 358

Query: 1284 RSQPGEVNIAALKHICSYRRPVFDAYDRLKLVQEWLLKNPKLRKIPKQLDDIVEVRRLAI 1463
            RS+  EVN AALKH+ SY+ PV DA  +L  +Q+WLLKNPKL     +LDDIVEVRRL I
Sbjct: 359  RSRQEEVNSAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLDRTGELDDIVEVRRLVI 418

Query: 1464 TPTKAYCLPPEVELSNRVLRNYKEFADRFLRVTFMD 1571
            TPTKAYCLPP VELSNRVLRNYK  ADRFLRVTFMD
Sbjct: 419  TPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMD 454


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1069 bits (2764), Expect(2) = 0.0
 Identities = 513/685 (74%), Positives = 585/685 (85%)
 Frame = +2

Query: 1610 SNSFPQKTSVFKRVKAILTDGFHLCGRKYSFLAFSSNQLRDRSAWFFAENDKVSVLDIKS 1789
            SNS PQ+T++F+RVK+IL+ GFHLCGRKYSFLAFS+NQLRDRSAWFFAE+ K+ V  I S
Sbjct: 478  SNSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIIS 537

Query: 1790 WMGKFTNRNIAKCAARMGQCFSSTYATVEVSALEVDEELPDINRNGYVFSDGIGMITLDL 1969
            WMG+F+NRN+AKCAARMGQCFSSTYATVEV + EV+ ELPDI RNGYVFSDGIGMI+ DL
Sbjct: 538  WMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADL 597

Query: 1970 AMEVAEKLKLDVNPPSAYQIRYAGCKGVVACWPGKDDGIRLSLRHSMNKFQSKHTTLEIC 2149
            A+EVAEKL L VNPPSAYQIRYAGCKGVVACWP K+DGIRLSLR SM KF S HT LEIC
Sbjct: 598  AIEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEIC 657

Query: 2150 SWTRFQPGFLNRQIITLLSTLNVPDEIFWKMQASMVSKLNQMLVDTDVAFDVITASCAEQ 2329
            SWTRFQPGFLNRQI+TLLS+L+V D IFW+MQ  M+S L++MLVD+DVAFDVITASCAE 
Sbjct: 658  SWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEA 717

Query: 2330 GNTGAIMLSAGFKPQTEPHLRGMLTCIRAAQLWGLREKARIFVHSGRWLMGCLDELGVLE 2509
            GNT A+MLSAGFKPQ+EPHLRGML+ IRA+QL  LR KARIFV SGRWLMGCLDELG LE
Sbjct: 718  GNTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELE 777

Query: 2510 HGQCFIQVSTPSLENCFLKHGSRFSETKKNVEVIKGIVAIAKNPCLHPGDIRILEAVDAP 2689
             GQCFIQVS+PSLENCF+KHG +FS+ KKN++V+KG+V IAKNPCLHPGD+RILEAVD P
Sbjct: 778  QGQCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVP 837

Query: 2690 GLHHLVDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLVPPGKKSWMPMLYDPVEAK 2869
             L HL DCLVFPQKG+RPH+NEASGSDLDGDLYFVTWDENL+PP KKSW+PM Y+P E K
Sbjct: 838  SLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVK 897

Query: 2870 LLTRQVNQVDIIDFFAKNMVNESLGKICNAHVVHADHSEYGAQDEDCLKLAELAATAVDF 3049
             L RQVN +DIIDFF+KNMV ESLG+ICNAHVVHAD SE+GA DE CLKLAELAA AVDF
Sbjct: 898  QLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDF 957

Query: 3050 PKTGKLVTMPPHLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDEDLVTSAEQSFV 3229
            PKTGKLVTMP  LKPK+YPDFMGKEEFQSYKS KILG+LYR +KD  D +   SA    V
Sbjct: 958  PKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVV 1017

Query: 3230 PGDIPYDKDLEVSGSADFVKVAWDCKCSYAGQLNALMGQYKVSREEEIVTGHVWSMPKYN 3409
            P DIPYD  LE+ GS  F+  AW+ KCSY GQLN L+GQYKV+REEE+VTG++WSMPKYN
Sbjct: 1018 PKDIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGYIWSMPKYN 1077

Query: 3410 SNKQGDLMERLKHAYNALRKEFRLLFEKMDSNLGENSVDEKNRIYEQKASAWYQVTYHPE 3589
            + KQG+L ERLKHAYN LRKEFR +FE+M+ +      DEKN +YE+KASAWYQVTYHP 
Sbjct: 1078 AKKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPH 1137

Query: 3590 WVKKSLNMKEPDGDGEKIILSFAWI 3664
            WV +SL ++  D     ++LSFAWI
Sbjct: 1138 WVARSLELQLADAVSNTVMLSFAWI 1162



 Score =  572 bits (1474), Expect(2) = 0.0
 Identities = 288/456 (63%), Positives = 355/456 (77%), Gaps = 5/456 (1%)
 Frame = +3

Query: 219  MESEGREEDLVV-QVSLGGFDCYVTAKVLTDYLEDAIGLVWRCRLKTSSTPPESYPNFEI 395
            M SEG E++LVV Q+S+GGFD  V AK+L++YLE+ +G VWRCRLK SSTPP+SYP ++I
Sbjct: 1    MGSEGCEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 396  VDVNKIQRTDDYKKVEPHAFVHFVSHASVTAAQDAAGRCELFFNDKPLKASFG--NPFLI 569
             D  K+QR ++Y+KV PHAFVHF S  S   A  AAG  EL    KPL  S G  NP+ +
Sbjct: 61   -DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRL 119

Query: 570  NQKTRTTTPYNFKDVYVEIGGLVSRGEYFVAWKGPATGVDFVVDPFDGTCKFLFTKDTVF 749
            NQ+ RTT P+ F DV VE+G LVS+ ++ V W+GP TGVDF+VDPF+GTCK LFTKDT F
Sbjct: 120  NQRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAF 179

Query: 750  SFKGKGKHAVIKCDFKVEFLVRDINEVKEYKDMLSFVILLQLASSPVLYYRTADDDIEES 929
            SF+G+ +HA+IKC+FK+EFLVR+INE+K+ KD  S VIL QLASSP+++YRTADDDIEES
Sbjct: 180  SFRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEES 239

Query: 930  ATFDLMDDEDPWIRTTDFTPSGAIGRCNTYKISIPARHGRRLKEAMDYLRRQRVPVGKLW 1109
              FDL+DD+D WIRTTD T SGAIGRCNTY+ISI  R+G   ++AM Y   +RVP+ ++ 
Sbjct: 240  VAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMC 299

Query: 1110 --QQLMIWNEPDFGMPVSDPFFCIQHETGITFDVLFLVNAVMHKGIINQHQLSERFYNLL 1283
              + L + +EPDFG+ +SDPFFC Q+E GI+F VLFLVNAV+HKGI+NQHQ++  F+ LL
Sbjct: 300  NRKMLRVKDEPDFGVSMSDPFFCFQNE-GISFRVLFLVNAVLHKGIVNQHQMANEFFYLL 358

Query: 1284 RSQPGEVNIAALKHICSYRRPVFDAYDRLKLVQEWLLKNPKLRKIPKQLDDIVEVRRLAI 1463
            RS   EVN AALKH+ SY+ PV DA  +L  +Q+WLLKNPKL     +LDDIVEVRRL I
Sbjct: 359  RSHQEEVNSAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLDRTGELDDIVEVRRLVI 418

Query: 1464 TPTKAYCLPPEVELSNRVLRNYKEFADRFLRVTFMD 1571
            TPTKAYCLPP VELSNRVLRNYK  ADRFLRVTFMD
Sbjct: 419  TPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMD 454


>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1059 bits (2739), Expect(2) = 0.0
 Identities = 510/685 (74%), Positives = 584/685 (85%)
 Frame = +2

Query: 1610 SNSFPQKTSVFKRVKAILTDGFHLCGRKYSFLAFSSNQLRDRSAWFFAENDKVSVLDIKS 1789
            SNS PQ+T++F+RVK+IL+ GFHLCGRKYSFLAFS+NQLRDRSAWFFAE+ K+ V  I S
Sbjct: 478  SNSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIIS 537

Query: 1790 WMGKFTNRNIAKCAARMGQCFSSTYATVEVSALEVDEELPDINRNGYVFSDGIGMITLDL 1969
            WMG+F+NRN+AKCAARMGQCFSSTYATVEV + EV+ ELPDI RNGYVFSDGIGMI+ DL
Sbjct: 538  WMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADL 597

Query: 1970 AMEVAEKLKLDVNPPSAYQIRYAGCKGVVACWPGKDDGIRLSLRHSMNKFQSKHTTLEIC 2149
            A+EVAEKL L+VNPPSAYQIRYAG KGVVACWP K+DGI LSLR SM KF S HT LEIC
Sbjct: 598  AIEVAEKLHLNVNPPSAYQIRYAGYKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEIC 657

Query: 2150 SWTRFQPGFLNRQIITLLSTLNVPDEIFWKMQASMVSKLNQMLVDTDVAFDVITASCAEQ 2329
            SWTRFQPGFLNRQI+TLLS+L+V D IFW+MQ  M+S L++MLVD+DVAFDVITASCAE 
Sbjct: 658  SWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEA 717

Query: 2330 GNTGAIMLSAGFKPQTEPHLRGMLTCIRAAQLWGLREKARIFVHSGRWLMGCLDELGVLE 2509
            GNT A+MLSAGFKPQ+EPHLRGML+ IRA+QL  LR KARIFV SGRWLMGCLDELG LE
Sbjct: 718  GNTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELE 777

Query: 2510 HGQCFIQVSTPSLENCFLKHGSRFSETKKNVEVIKGIVAIAKNPCLHPGDIRILEAVDAP 2689
             GQCFIQVS+PSLENCF+KHG +FS+ KKN++V+KG+V IAKNPCLHPGD+RILEAVD P
Sbjct: 778  QGQCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVP 837

Query: 2690 GLHHLVDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLVPPGKKSWMPMLYDPVEAK 2869
             L HL DCLVFPQKG+RPH+NEASGSDLDGDLYFVTWDENL+PP KKSW+PM Y+P E K
Sbjct: 838  SLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVK 897

Query: 2870 LLTRQVNQVDIIDFFAKNMVNESLGKICNAHVVHADHSEYGAQDEDCLKLAELAATAVDF 3049
             L RQVN +DIIDFF+KNMV ESLG+ICNAHVVHAD SE+GA DE CLKLAELAA AVDF
Sbjct: 898  QLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDF 957

Query: 3050 PKTGKLVTMPPHLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDEDLVTSAEQSFV 3229
            PKTGKLVTMP  LKPK+YPDFMGKEEFQSYKS KILG+LYR +KD  D +   SA    V
Sbjct: 958  PKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVV 1017

Query: 3230 PGDIPYDKDLEVSGSADFVKVAWDCKCSYAGQLNALMGQYKVSREEEIVTGHVWSMPKYN 3409
            P DIPYD  L + GS  F+  AW+ KCSY GQL+ L+GQYKV+REEE+VTGH+WSMPKY+
Sbjct: 1018 PKDIPYDTTLVIPGSTVFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYS 1077

Query: 3410 SNKQGDLMERLKHAYNALRKEFRLLFEKMDSNLGENSVDEKNRIYEQKASAWYQVTYHPE 3589
            + KQG+L ERLKHAYN LRKEFR +FE+MD +      DEKN +YE+KASAWYQVTY+P 
Sbjct: 1078 AKKQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPH 1137

Query: 3590 WVKKSLNMKEPDGDGEKIILSFAWI 3664
            WV +SL ++ PD     ++LSFAWI
Sbjct: 1138 WVARSLELQLPDAISSTVMLSFAWI 1162



 Score =  573 bits (1477), Expect(2) = 0.0
 Identities = 286/456 (62%), Positives = 356/456 (78%), Gaps = 5/456 (1%)
 Frame = +3

Query: 219  MESEGREEDLVV-QVSLGGFDCYVTAKVLTDYLEDAIGLVWRCRLKTSSTPPESYPNFEI 395
            M SEG E+DLVV Q+S+GGFD  V AK+L++YLE+ +G VWRCRLK S+TPP+SYP ++I
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDI 60

Query: 396  VDVNKIQRTDDYKKVEPHAFVHFVSHASVTAAQDAAGRCELFFNDKPLKASFG--NPFLI 569
             D  ++ R  DY+KV PHAFVHF S  S   A  AAG  EL    KPL  S G  NP+ +
Sbjct: 61   -DAERVHRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRL 119

Query: 570  NQKTRTTTPYNFKDVYVEIGGLVSRGEYFVAWKGPATGVDFVVDPFDGTCKFLFTKDTVF 749
            NQ+ RTT P+ F DV VE+G LVS+ ++ V W+GP TGVDF+VDPF+GTCK LFTKDT F
Sbjct: 120  NQRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAF 179

Query: 750  SFKGKGKHAVIKCDFKVEFLVRDINEVKEYKDMLSFVILLQLASSPVLYYRTADDDIEES 929
            SF+G+ +HA+IKC+FK+EFLVR+INE+K+ KD  S VIL QLASSP+++YRTADDDIEES
Sbjct: 180  SFRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEES 239

Query: 930  ATFDLMDDEDPWIRTTDFTPSGAIGRCNTYKISIPARHGRRLKEAMDYLRRQRVPVGKLW 1109
              FDL+DD+D WIRTTD T SGAIGRCNTY+ISI  R+G   ++AM Y   +RVP+ ++ 
Sbjct: 240  VAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMC 299

Query: 1110 --QQLMIWNEPDFGMPVSDPFFCIQHETGITFDVLFLVNAVMHKGIINQHQLSERFYNLL 1283
              + L + +EPDFG+ +SDPFFC Q+E GI+F V+FLVNAV+HKGI+NQHQ++  F+ LL
Sbjct: 300  NRKMLRVKDEPDFGVSMSDPFFCFQNE-GISFKVMFLVNAVLHKGIVNQHQMTNEFFYLL 358

Query: 1284 RSQPGEVNIAALKHICSYRRPVFDAYDRLKLVQEWLLKNPKLRKIPKQLDDIVEVRRLAI 1463
            RS+  EVN+AALKH+ SY+ PV DA  +L  +Q+WLLKNPKL +   +LDDIVEVRRL I
Sbjct: 359  RSRQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVI 418

Query: 1464 TPTKAYCLPPEVELSNRVLRNYKEFADRFLRVTFMD 1571
            TPTKAYCLPP VELSNRVLRNYK  ADRFLRVTFMD
Sbjct: 419  TPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMD 454


>gb|AGU69384.1| RNA-dependendent RNA polymerase 6-like protein [Lotus japonicus]
          Length = 1201

 Score = 1057 bits (2734), Expect(2) = 0.0
 Identities = 515/692 (74%), Positives = 582/692 (84%), Gaps = 7/692 (1%)
 Frame = +2

Query: 1610 SNSFPQKTSVFKRVKAILTDGFHLCGRKYSFLAFSSNQLRDRSAWFFAENDKVSVLDIKS 1789
            SNSFPQKT ++KRVK IL +GFH C RKY+FLAFSSNQLRDRSAWFFAE+DK+    I+ 
Sbjct: 478  SNSFPQKTRIYKRVKTILEEGFHFCDRKYAFLAFSSNQLRDRSAWFFAEDDKIKCDGIRD 537

Query: 1790 WMGKFTNRNIAKCAARMGQCFSSTYATVEVSALEVDEELPDINRNGYVFSDGIGMITLDL 1969
            WMG+F+NRN+AKCAARMGQCFSSTYATVEV A EV+  LPDI RN YVFSDGIG+IT DL
Sbjct: 538  WMGRFSNRNVAKCAARMGQCFSSTYATVEVPATEVNSMLPDIERNKYVFSDGIGIITPDL 597

Query: 1970 AMEVAEKLKLDVNPPSAYQIRYAGCKGVVACWPGKDDGIRLSLRHSMNKFQSKHTTLEIC 2149
            A EVAEKLKLD+  PSAYQIRYAG KGVVA WP K DGIRLSLR SMNKFQS HTTLEIC
Sbjct: 598  AGEVAEKLKLDI-APSAYQIRYAGFKGVVASWPAKGDGIRLSLRTSMNKFQSSHTTLEIC 656

Query: 2150 SWTRFQPGFLNRQIITLLSTLNVPDEIFWKMQASMVSKLNQMLVDTDVAFDVITASCAEQ 2329
            +WTRFQPGFLNRQIITLLS L V DE+FWKMQ  M+SKLNQMLV+ DVAFDV+T SCAE 
Sbjct: 657  AWTRFQPGFLNRQIITLLSALEVSDEVFWKMQEVMISKLNQMLVNADVAFDVLTKSCAEH 716

Query: 2330 GNTGAIMLSAGFKPQTEPHLRGMLTCIRAAQLWGLREKARIFVHSGRWLMGCLDELGVLE 2509
            GN  AIMLS GF PQTEPHL+GMLT IRAAQLWGLREK+RIFV SGRWLMG LDELGVLE
Sbjct: 717  GNAAAIMLSCGFSPQTEPHLKGMLTSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLE 776

Query: 2510 HGQCFIQVSTPSLENCFLKHGSRFSETKKNVEVIKGIVAIAKNPCLHPGDIRILEAVDAP 2689
             GQCF+QVSTPSLENCF KHGSRFSET K+++V+KG V IAKNPCLHPGD+RILEA+D+P
Sbjct: 777  QGQCFVQVSTPSLENCFSKHGSRFSET-KSLQVVKGYVVIAKNPCLHPGDVRILEAIDSP 835

Query: 2690 GLHHLVDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLVPPGKKSWMPMLYDPVEAK 2869
             LHHL DCLVFPQKG+RPHTNEASGSDLDGDLYFVTWD+NL+PP K+SW+PM YD  E+K
Sbjct: 836  DLHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDDNLIPPSKRSWIPMEYDAQESK 895

Query: 2870 LLTRQVNQVDIIDFFAKNMVNESLGKICNAHVVHADHSEYGAQDEDCLKLAELAATAVDF 3049
            L TR+V   DIIDFF +NMVNE+LG ICNAHVVHAD S+YGA DE C+ LAE AA AVDF
Sbjct: 896  LQTRKVTSRDIIDFFVRNMVNENLGAICNAHVVHADSSDYGALDEKCIILAEKAAAAVDF 955

Query: 3050 PKTGKLVTMPPHLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDEDLVTSAEQSFV 3229
            PKTGKLV MP  LKPKLYPDFMGK++  SYKS KILGRLYR IKDAYD+D + + E ++V
Sbjct: 956  PKTGKLVIMPSELKPKLYPDFMGKDQHMSYKSKKILGRLYRRIKDAYDKD-IDAPELNYV 1014

Query: 3230 PGDIPYDKDLEVSGSADFVKVAWDCKCSYAGQLNALMGQYKVSREEEIVTGHVWSMPKYN 3409
             G IPYD +LEV GSADF+  AW  KCSY GQL+ L+GQYKV REEE+VTG +WSMPKYN
Sbjct: 1015 TGAIPYDTELEVPGSADFIADAWKQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPKYN 1074

Query: 3410 SNKQGDLMERLKHAYNALRKEFRLLFEKMDSNLGENSVDEKNRIYEQKASAWYQVTYHPE 3589
            S KQG+L ERLKH+Y+AL+KEFR  FEK+DS++ E   +EKN +YE+KASAWYQVTYHP 
Sbjct: 1075 SRKQGELKERLKHSYSALKKEFRQTFEKLDSDVRELGEEEKNLLYEKKASAWYQVTYHPT 1134

Query: 3590 WVKKSLNMK-------EPDGDGEKIILSFAWI 3664
            WVKKSL ++       E +  GE ++LSF WI
Sbjct: 1135 WVKKSLELQDKSPENLESNSLGETVMLSFPWI 1166



 Score =  582 bits (1501), Expect(2) = 0.0
 Identities = 286/447 (63%), Positives = 347/447 (77%), Gaps = 2/447 (0%)
 Frame = +3

Query: 237  EEDLVVQVSLGGFDCYVTAKVLTDYLEDAIGLVWRCRLKTSSTPPESYPNFEIVDVNKIQ 416
            +E +V QVS+GGFD  V A  L ++LE+ IGLV+RCRLKTS TPPESYP F + D   ++
Sbjct: 8    KESVVTQVSIGGFDSEVKAHDLAEFLENRIGLVYRCRLKTSWTPPESYPEFNVADTALVK 67

Query: 417  RTDDYKKVEPHAFVHFVSHASVTAAQDAAGRCELFFNDKPLKASFG--NPFLINQKTRTT 590
            RTDDYKKVEPHAFVHF    SVT A DA+G C+L +  KPLK   G  NP+ +NQ+ R  
Sbjct: 68   RTDDYKKVEPHAFVHFALPESVTEALDASGSCDLMWEGKPLKVISGPQNPYFLNQRRRKE 127

Query: 591  TPYNFKDVYVEIGGLVSRGEYFVAWKGPATGVDFVVDPFDGTCKFLFTKDTVFSFKGKGK 770
            TP+   DV VEIG LVS  E+ VAW+GP  GV+ +VDPFD  C+  F++DT FS K   K
Sbjct: 128  TPFKLSDVLVEIGTLVSPEEFVVAWRGPEKGVNLLVDPFDRMCRLRFSRDTAFSIKQNEK 187

Query: 771  HAVIKCDFKVEFLVRDINEVKEYKDMLSFVILLQLASSPVLYYRTADDDIEESATFDLMD 950
             AVIKCDFKVEF+VRDI EV+ Y D    V+LL LASSP+++YRTADDDIEES +FDL+D
Sbjct: 188  KAVIKCDFKVEFMVRDIYEVRRYDDTSYRVVLLHLASSPLVWYRTADDDIEESVSFDLLD 247

Query: 951  DEDPWIRTTDFTPSGAIGRCNTYKISIPARHGRRLKEAMDYLRRQRVPVGKLWQQLMIWN 1130
            D+DPWIRTTDFTPSGAIGRCN Y+ISIP RHG +L +AM YL  QRV    L + L I +
Sbjct: 248  DDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMAYLNFQRVQEFPLKRPLRIQD 307

Query: 1131 EPDFGMPVSDPFFCIQHETGITFDVLFLVNAVMHKGIINQHQLSERFYNLLRSQPGEVNI 1310
            EP+FG+P+SD FF I  + GITFD++FLVNAV+HKGI+N + LS+RF+ +LR+QP EVN+
Sbjct: 308  EPNFGVPMSDDFFYIHCQEGITFDIMFLVNAVIHKGILNPYSLSDRFFEVLRNQPQEVNV 367

Query: 1311 AALKHICSYRRPVFDAYDRLKLVQEWLLKNPKLRKIPKQLDDIVEVRRLAITPTKAYCLP 1490
            AALKH+CSY+RPVFDA  RLK VQEWLL+NPKL +  KQ DDIVEVRRL ITPT+AYC+P
Sbjct: 368  AALKHLCSYKRPVFDAAKRLKTVQEWLLRNPKLYQSSKQADDIVEVRRLVITPTRAYCVP 427

Query: 1491 PEVELSNRVLRNYKEFADRFLRVTFMD 1571
            PE ELSNRVLR Y+E ++RFLRVTFMD
Sbjct: 428  PEHELSNRVLRRYREVSNRFLRVTFMD 454