BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia22_contig00002339
         (3103 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004295686.1| PREDICTED: uncharacterized mitochondrial pro...   225   2e-64
gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]              252   9e-64
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni...   197   1e-56
ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group] g...   195   1e-56
gb|AAB82754.1| retrofit [Oryza longistaminata]                        197   2e-56
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  196   4e-56
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group...   196   4e-56
gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subc...   193   4e-56
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz...   192   6e-56
gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sa...   192   6e-56
gb|EEC76475.1| hypothetical protein OsI_14210 [Oryza sativa Indi...   192   6e-56
emb|CAN64288.1| hypothetical protein VITISV_022326 [Vitis vinifera]   192   2e-55
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...   190   2e-55
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p...   196   5e-55
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]                  194   1e-54
emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]   196   1e-54
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...   191   4e-54
emb|CAN83506.1| hypothetical protein VITISV_027576 [Vitis vinifera]   202   4e-54
gb|ABF96081.1| retrotransposon protein, putative, Ty1-copia subc...   187   6e-54
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...   186   9e-54

>ref|XP_004295686.1| PREDICTED: uncharacterized mitochondrial protein AtMg00810-like
            [Fragaria vesca subsp. vesca]
          Length = 261

 Score =  225 bits (573), Expect(2) = 2e-64
 Identities = 121/229 (52%), Positives = 156/229 (68%), Gaps = 12/229 (5%)
 Frame = +2

Query: 1604 LFSVMDLGPLNFFMGLEVVPTSFGIFFTQTKYTLDLLHRAKFQES----TPVQSGKK*SL 1771
            +FS+ DLG +++F+G+E        + TQ KY +DLL R K  ++    TP  +G+K SL
Sbjct: 1    MFSMKDLGRIHYFLGIEATYDGPSPYLTQKKYIVDLLTRTKMLDANPCATPAATGQKLSL 60

Query: 1772 YDGDPLSDPTKYRSVVGALQYLTLVL------ISLLCQFMHQLTT-HWITVKRILRYLKS 1930
            + G  LSDPT+YRSVVGALQYLTL        ++ +C+FMH  TT HWI VK ILRYLK 
Sbjct: 61   HSGKKLSDPTEYRSVVGALQYLTLTRPDISYSVNQVCKFMHSPTTIHWIAVKPILRYLKF 120

Query: 1931 TPDFGLLYKPGSLTLQGYSDADYAGDPDSRHSTGGFYIFLGSNLILRSSKKQLT-AHSST 2107
            + + GL Y+P SL +  Y DADYAGDPD+R STGG+ ++LG NLI  S K   T + S  
Sbjct: 121  SLNHGLKYQPSSLFISAYFDADYAGDPDNRQSTGGYCVYLGPNLISWSYKTHRTVSRSCA 180

Query: 2108 EVEYRQLAYTAAEISWLRSLLQDLRVFLTPSHIWCDNISSFSLASNPVF 2254
            E EYRQLA+TAAEISWLRS+  DL +FL    IWCD +S+ ++ASNPVF
Sbjct: 181  EAEYRQLAFTAAEISWLRSMFCDLSLFLQCPRIWCDYLSAIAIASNPVF 229



 Score = 50.8 bits (120), Expect(2) = 2e-64
 Identities = 20/29 (68%), Positives = 25/29 (86%)
 Frame = +1

Query: 2251 FHARTNHLEVDYHYIREKVVRKEIDVSYI 2337
            FHART H+EVDYHY REKVV KE++V ++
Sbjct: 229  FHARTKHVEVDYHYFREKVVNKELEVRFV 257


>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score =  252 bits (643), Expect = 9e-64
 Identities = 150/294 (51%), Positives = 184/294 (62%), Gaps = 13/294 (4%)
 Frame = +2

Query: 1604 LFSVMDLGPLNFFMGLEVVPTSFGIFFTQTKYTLDLLHRAKFQES----TPVQSGKK*SL 1771
            LFS+ DLG +++F+G+E V     +  TQ KY +DLL + K  +S    TPV SGKK S+
Sbjct: 1091 LFSMKDLGSVHYFLGIETVYNGDHLHLTQHKYIVDLLKKTKLHDSRPYPTPVLSGKKLSV 1150

Query: 1772 YDGDPLSDPTKYRSVVGALQYLTLV------LISLLCQFMHQLTT-HWITVKRILRYLKS 1930
            YDG  L DP++YRS+VGALQYLTL        ++ +CQFMH  T  HW+ VKRILRYLK 
Sbjct: 1151 YDGVKLEDPSEYRSIVGALQYLTLTRPDICYAVNQVCQFMHSPTNVHWVAVKRILRYLKY 1210

Query: 1931 TPDFGLLYKPGSLTLQGYSDADYAGDPDSRHSTGGFYIFLGSNLILRSSKKQLT-AHSST 2107
            T + GL+Y+PGS  L  YSDADYAGDPD RHSTGGF           SSKK  T + SS 
Sbjct: 1211 TLNHGLVYQPGSHKLVAYSDADYAGDPDDRHSTGGFC----------SSKKHKTVSRSSA 1260

Query: 2108 EVEYRQLAYTAAEISWLRSLLQDLRVFLTPSHIWCDNISSFSLASNPVFMLVQIIWRLTT 2287
            E EYRQLAYTAAE+SWLRSL +DL VFL+   IWCDNISS SLASNPVF        +  
Sbjct: 1261 EAEYRQLAYTAAELSWLRSLFRDLNVFLSCPRIWCDNISSISLASNPVFHSRTKHIEVDY 1320

Query: 2288 IISEKKLFARKLMLVTFVLIISFPTFSQKGLSTPQFRFLQDKLMVHC-PMNLWG 2446
                 K+  ++L +              KGLST +F+FL  KL V   P++L G
Sbjct: 1321 HYVRDKVVRQELAVSYVSTADQTADIFTKGLSTQRFQFLASKLPVRARPLSLRG 1374


>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108706314|gb|ABF94109.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1247

 Score =  197 bits (502), Expect(2) = 1e-56
 Identities = 117/236 (49%), Positives = 155/236 (65%), Gaps = 17/236 (7%)
 Frame = +2

Query: 1598 QQLFSVMDLGPLNFFMGLEVVPTSFGIFFTQTKYTLDLLHRAKFQE----STPVQSGKK* 1765
            Q+ F++ DLG L++F+G+EV   S GI  TQ KY  DLL R    +    STP+ + +K 
Sbjct: 954  QKEFALKDLGDLHYFLGIEVTKVSGGIVLTQDKYVNDLLRRVNMFDCKPVSTPLSTSEKL 1013

Query: 1766 SLYDGDPL--SDPTKYRSVVGALQYLTLVL------ISLLCQFMHQLTTH-WITVKRILR 1918
            S+ +GDPL  +D T YRSVVGALQYLTL        ++ +CQF+H  TTH W  VKRILR
Sbjct: 1014 SINEGDPLGPNDATHYRSVVGALQYLTLTRPDIAFPVNKVCQFLHAPTTHHWAAVKRILR 1073

Query: 1919 YLKSTPDFGL-LYKPGSLTLQGYSDADYAGDPDSRHSTGGFYIFLGSNLILRSSKKQLT- 2092
            YLK     GL L K  S+ +  YSDAD+AG  D R STGGF +FLG NL+  S++KQ T 
Sbjct: 1074 YLKQCTRLGLKLSKSRSMLVSAYSDADWAGSLDDRRSTGGFAVFLGDNLVSWSARKQATV 1133

Query: 2093 AHSSTEVEYRQLAYTAAEISWLRSLLQDLRVFLTPS--HIWCDNISSFSLASNPVF 2254
            + SSTE EY+ LA   AEI W+++LL +L+V  +PS   +WCDN+ +  L++NPVF
Sbjct: 1134 SRSSTESEYKALANATAEIMWVQTLLAELQV-ESPSMAKLWCDNLGAKYLSANPVF 1188



 Score = 52.4 bits (124), Expect(2) = 1e-56
 Identities = 21/41 (51%), Positives = 32/41 (78%)
 Frame = +1

Query: 2251 FHARTNHLEVDYHYIREKVVRKEIDVSYICSHYQLPDIFTK 2373
            FHART H+EVDYH++RE+V RK +++ ++ +  Q+ D FTK
Sbjct: 1188 FHARTKHIEVDYHFVRERVSRKLLEIDFVPTGDQVADGFTK 1228


>ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group]
            gi|255678617|dbj|BAH94406.1| Os08g0544300 [Oryza sativa
            Japonica Group]
          Length = 821

 Score =  195 bits (495), Expect(2) = 1e-56
 Identities = 115/241 (47%), Positives = 157/241 (65%), Gaps = 19/241 (7%)
 Frame = +2

Query: 1589 SLFQQL---FSVMDLGPLNFFMGLEVVPTSFGIFFTQTKYTLDLLHRAKFQE----STPV 1747
            +L Q+L   F++ DLG L++F+G+EV     G+  +Q KY  DLL R    E    STP+
Sbjct: 516  TLLQELSKDFALKDLGDLHYFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYECKPVSTPL 575

Query: 1748 QSGKK*SLYDGDPLS--DPTKYRSVVGALQYLTLVL------ISLLCQFMHQ-LTTHWIT 1900
             + +K S+ +G  L   D T+YRSVVGALQYLTL        I+ +CQF+H   TTHW  
Sbjct: 576  STSEKLSVNEGTLLGPQDSTQYRSVVGALQYLTLTRPDISFSINKVCQFLHAPTTTHWAA 635

Query: 1901 VKRILRYLKSTPDFGLLY-KPGSLTLQGYSDADYAGDPDSRHSTGGFYIFLGSNLILRSS 2077
            VKRILRY+K T D GL + +  SL + G+SDAD+AG PD R STGGF +FLG NL+  S+
Sbjct: 636  VKRILRYVKYTVDTGLKFCRNPSLLVSGFSDADWAGSPDDRRSTGGFAVFLGPNLVSWSA 695

Query: 2078 KKQLT-AHSSTEVEYRQLAYTAAEISWLRSLLQDLRV-FLTPSHIWCDNISSFSLASNPV 2251
            +KQ T + SSTE EY+ LA   AEI W+++LLQ+L V     + +WCDN+ +  L++NP+
Sbjct: 696  RKQATVSRSSTEAEYKALANATAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPI 755

Query: 2252 F 2254
            F
Sbjct: 756  F 756



 Score = 55.1 bits (131), Expect(2) = 1e-56
 Identities = 22/41 (53%), Positives = 33/41 (80%)
 Frame = +1

Query: 2251 FHARTNHLEVDYHYIREKVVRKEIDVSYICSHYQLPDIFTK 2373
            FHART H+EVD+H++RE+V RK ++++YI +  Q+ D FTK
Sbjct: 756  FHARTKHIEVDFHFVRERVARKLLEIAYISTKDQVADGFTK 796


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score =  197 bits (502), Expect(2) = 2e-56
 Identities = 111/232 (47%), Positives = 152/232 (65%), Gaps = 16/232 (6%)
 Frame = +2

Query: 1607 FSVMDLGPLNFFMGLEVVPTSFGIFFTQTKYTLDLLHRAKFQE----STPVQSGKK*SLY 1774
            F++ DLG L++F+G+EV   S G+  TQ KY  DLL R         STP+   +K +LY
Sbjct: 1155 FALKDLGDLHYFLGIEVTKVSNGVILTQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTLY 1214

Query: 1775 DGDPL--SDPTKYRSVVGALQYLTLVL------ISLLCQFMHQLTT-HWITVKRILRYLK 1927
            +G PL  +D  +YRS+VGALQYLTL        ++ +CQF+H  TT HWI VKRILRYL 
Sbjct: 1215 EGSPLGPNDAIQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTSHWIAVKRILRYLN 1274

Query: 1928 STPDFGL-LYKPGSLTLQGYSDADYAGDPDSRHSTGGFYIFLGSNLILRSSKKQLT-AHS 2101
                 GL ++K  S  + GYSDAD+AG  D R STGGF +FLGSNL+  S++KQ T + S
Sbjct: 1275 QCTSLGLHIHKSASTLVHGYSDADWAGSIDDRKSTGGFAVFLGSNLVSWSARKQPTVSRS 1334

Query: 2102 STEVEYRQLAYTAAEISWLRSLLQDLRV-FLTPSHIWCDNISSFSLASNPVF 2254
            STE EY+ +A T AE+ W+++LL++L +     + IWCDN+ +  L++NPVF
Sbjct: 1335 STEAEYKAVANTTAELIWVQTLLKELGIESPKAAKIWCDNLGAKYLSANPVF 1386



 Score = 52.0 bits (123), Expect(2) = 2e-56
 Identities = 21/41 (51%), Positives = 32/41 (78%)
 Frame = +1

Query: 2251 FHARTNHLEVDYHYIREKVVRKEIDVSYICSHYQLPDIFTK 2373
            FHART H+EVDYH++RE+V +K +++ ++ S  Q+ D FTK
Sbjct: 1386 FHARTKHIEVDYHFVRERVSQKLLEIDFVPSGDQVADGFTK 1426


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score =  196 bits (499), Expect(2) = 4e-56
 Identities = 111/232 (47%), Positives = 151/232 (65%), Gaps = 16/232 (6%)
 Frame = +2

Query: 1607 FSVMDLGPLNFFMGLEVVPTSFGIFFTQTKYTLDLLHRAKFQE----STPVQSGKK*SLY 1774
            F++ DLG L++F+G+EV     GI  TQ KY  DLL R         STP+   +K +LY
Sbjct: 1146 FALKDLGDLHYFLGIEVTKVPNGIVLTQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTLY 1205

Query: 1775 DGDPL--SDPTKYRSVVGALQYLTLVL------ISLLCQFMHQLTT-HWITVKRILRYLK 1927
            +G PL  +D T+YRS+VGALQYLTL        ++ +CQF+H  TT HW  VKRILRYL 
Sbjct: 1206 EGSPLGPNDATQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTDHWTAVKRILRYLN 1265

Query: 1928 STPDFGL-LYKPGSLTLQGYSDADYAGDPDSRHSTGGFYIFLGSNLILRSSKKQLT-AHS 2101
                 GL ++K  S  + GYSDAD+AG  D R STGGF +FLGSNL+  S++KQ T + S
Sbjct: 1266 QCTSLGLNIHKSASTLVHGYSDADWAGSVDDRKSTGGFAVFLGSNLVSWSARKQPTVSRS 1325

Query: 2102 STEVEYRQLAYTAAEISWLRSLLQDLRV-FLTPSHIWCDNISSFSLASNPVF 2254
            STE EY+ +A T AE+ W+++LL++L +     + IWCDN+ +  L++NPVF
Sbjct: 1326 STEAEYKAVANTTAELIWVQTLLRELGIDSPKAAKIWCDNLGAKYLSANPVF 1377



 Score = 52.0 bits (123), Expect(2) = 4e-56
 Identities = 21/41 (51%), Positives = 32/41 (78%)
 Frame = +1

Query: 2251 FHARTNHLEVDYHYIREKVVRKEIDVSYICSHYQLPDIFTK 2373
            FHART H+EVDYH++RE+V +K +++ ++ S  Q+ D FTK
Sbjct: 1377 FHARTKHIEVDYHFVRERVSQKLLEIDFVPSGDQVADGFTK 1417


>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1256

 Score =  196 bits (499), Expect(2) = 4e-56
 Identities = 113/235 (48%), Positives = 154/235 (65%), Gaps = 16/235 (6%)
 Frame = +2

Query: 1598 QQLFSVMDLGPLNFFMGLEVVPTSFGIFFTQTKYTLDLLHRAKFQE----STPVQSGKK* 1765
            Q+ F++ DLG L++F+G+EV   S GI  TQ KY  DLL R    +    STP+ + +K 
Sbjct: 963  QKDFALKDLGDLHYFLGIEVNKASSGIVLTQEKYVTDLLRRVGMTDCKPVSTPLSTSEKL 1022

Query: 1766 SLYDGDPL--SDPTKYRSVVGALQYLTLVL------ISLLCQFMHQLT-THWITVKRILR 1918
            +L++GD L  +D + YRSVVGALQYLTL        ++ +CQF+H  T  HW  +KRILR
Sbjct: 1023 TLHEGDLLGPNDASNYRSVVGALQYLTLTRPDIYFPVNKVCQFLHAPTIVHWAAMKRILR 1082

Query: 1919 YLKSTPDFGL-LYKPGSLTLQGYSDADYAGDPDSRHSTGGFYIFLGSNLILRSSKKQLTA 2095
            YLK     GL + K  S+ + GYSDAD+AG+ D R STGGF +FLG NL+  ++KKQ T 
Sbjct: 1083 YLKQCTKLGLKISKSKSMLVSGYSDADWAGNIDDRRSTGGFAVFLGDNLVSWNAKKQATV 1142

Query: 2096 -HSSTEVEYRQLAYTAAEISWLRSLLQDLRVFLTP-SHIWCDNISSFSLASNPVF 2254
              SSTE EY+ LA   AEI W+++LL++L V   P + +WCDN+ +  L+SNPVF
Sbjct: 1143 PRSSTESEYKALANATAEIMWIQTLLEELSVPSPPMARLWCDNLGAKYLSSNPVF 1197



 Score = 52.0 bits (123), Expect(2) = 4e-56
 Identities = 22/41 (53%), Positives = 32/41 (78%)
 Frame = +1

Query: 2251 FHARTNHLEVDYHYIREKVVRKEIDVSYICSHYQLPDIFTK 2373
            FHART H+EVDYH++RE++ RK ++V +I +  Q+ D FTK
Sbjct: 1197 FHARTKHIEVDYHFVRERMQRKLLEVEFIPTGDQVADGFTK 1237


>gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 932

 Score =  193 bits (491), Expect(2) = 4e-56
 Identities = 108/232 (46%), Positives = 153/232 (65%), Gaps = 16/232 (6%)
 Frame = +2

Query: 1607 FSVMDLGPLNFFMGLEVVPTSFGIFFTQTKYTLDLLHRAKFQ----ESTPVQSGKK*SLY 1774
            F++ DLG L++F+G+EV   S G+  +Q  Y  D+L RA        STP+ + +K S+ 
Sbjct: 644  FALKDLGDLHYFLGIEVKKVSQGLVLSQAWYASDILKRAGMSICKPASTPLSTTEKLSIE 703

Query: 1775 DGDPL--SDPTKYRSVVGALQYLTLV------LISLLCQFMHQLTT-HWITVKRILRYLK 1927
            DGD L  +D + YRS+VGALQYLTL       L++ +CQF+H  TT HW  VKRILRY+K
Sbjct: 704  DGDFLGQNDASHYRSIVGALQYLTLTRSDLSFLVNKVCQFLHSPTTVHWSAVKRILRYIK 763

Query: 1928 STPDFGLLY-KPGSLTLQGYSDADYAGDPDSRHSTGGFYIFLGSNLILRSSKKQLT-AHS 2101
             T +FGL + K  S+ +  +SDAD+AG  D R STGGF +FLG NLI  S++KQ T + S
Sbjct: 764  GTVEFGLRFGKSDSMLISAFSDADWAGCSDDRRSTGGFAVFLGPNLISWSARKQATVSRS 823

Query: 2102 STEVEYRQLAYTAAEISWLRSLLQDLRVFL-TPSHIWCDNISSFSLASNPVF 2254
            STE EY+ LA    E++W+R +L +LR+   + + +WCDN+ +  L++NPVF
Sbjct: 824  STEAEYKALANATTEVTWVRKILDELRIARPSVAQLWCDNLGATYLSANPVF 875



 Score = 55.1 bits (131), Expect(2) = 4e-56
 Identities = 22/41 (53%), Positives = 32/41 (78%)
 Frame = +1

Query: 2251 FHARTNHLEVDYHYIREKVVRKEIDVSYICSHYQLPDIFTK 2373
            FHART H+E+DYH++RE+V +K +D+ +I +  QL D FTK
Sbjct: 875  FHARTKHIEIDYHFVREQVAKKLLDIQFISTTDQLADGFTK 915


>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
            Group]
          Length = 1399

 Score =  192 bits (489), Expect(2) = 6e-56
 Identities = 114/241 (47%), Positives = 156/241 (64%), Gaps = 19/241 (7%)
 Frame = +2

Query: 1589 SLFQQL---FSVMDLGPLNFFMGLEVVPTSFGIFFTQTKYTLDLLHRAKFQE----STPV 1747
            +L Q+L   F++ DLG L++F+G+EV     G+  +Q KY  DLL R    E    STP+
Sbjct: 1094 TLLQELSKDFALKDLGDLHYFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYECKPVSTPL 1153

Query: 1748 QSGKK*SLYDGDPLS--DPTKYRSVVGALQYLTLVL------ISLLCQFMHQ-LTTHWIT 1900
             + +K S+ +G  L   D T+YRSVVGALQYLTL        I+ +CQF+H   TTHW  
Sbjct: 1154 STSEKLSVNEGTLLGPQDSTQYRSVVGALQYLTLTRPDISFSINKVCQFLHAPTTTHWAA 1213

Query: 1901 VKRILRYLKSTPDFGLLY-KPGSLTLQGYSDADYAGDPDSRHSTGGFYIFLGSNLILRSS 2077
            VKRILRY+K T D GL + +  SL + G+SDAD+AG PD R STGGF +FLG NL+  S+
Sbjct: 1214 VKRILRYVKYTVDTGLKFCRNPSLLVSGFSDADWAGSPDDRRSTGGFAVFLGPNLVSWSA 1273

Query: 2078 KKQLT-AHSSTEVEYRQLAYTAAEISWLRSLLQDLRV-FLTPSHIWCDNISSFSLASNPV 2251
            +KQ T + SS E EY+ LA   AEI W+++LLQ+L V     + +WCDN+ +  L++NP+
Sbjct: 1274 RKQATVSRSSIEAEYKALANATAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPI 1333

Query: 2252 F 2254
            F
Sbjct: 1334 F 1334



 Score = 55.1 bits (131), Expect(2) = 6e-56
 Identities = 22/41 (53%), Positives = 33/41 (80%)
 Frame = +1

Query: 2251 FHARTNHLEVDYHYIREKVVRKEIDVSYICSHYQLPDIFTK 2373
            FHART H+EVD+H++RE+V RK ++++YI +  Q+ D FTK
Sbjct: 1334 FHARTKHIEVDFHFVRERVARKLLEIAYISTKDQVADGFTK 1374


>gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|31433472|gb|AAP54977.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1031

 Score =  192 bits (487), Expect(2) = 6e-56
 Identities = 109/245 (44%), Positives = 156/245 (63%), Gaps = 16/245 (6%)
 Frame = +2

Query: 1568 IKGLKQESLFQQLFSVMDLGPLNFFMGLEVVPTSFGIFFTQTKYTLDLLHRAKFQE---- 1735
            +K L QE      F++ DLG L++F+G+EV   + GI  TQ KY +D+L R    +    
Sbjct: 733  LKNLNQE------FALKDLGRLHYFLGIEVKEVNDGIVLTQEKYAMDVLKRVNMSDCKAV 786

Query: 1736 STPVQSGKK*SLYDGDPLS--DPTKYRSVVGALQYLTLVL------ISLLCQFMHQLTT- 1888
            +TP+   +K S ++G+PL   D T+YRS+VGALQYLTL        ++ +CQ++H  TT 
Sbjct: 787  NTPLSISEKLSAHEGNPLGPEDSTRYRSLVGALQYLTLTRPDLSFSVNKVCQYLHAATTK 846

Query: 1889 HWITVKRILRYLKSTPDFGL-LYKPGSLTLQGYSDADYAGDPDSRHSTGGFYIFLGSNLI 2065
            HW+  KRILRYLK T   GL + K  SL +  +SDAD+AG  D R STGGF +F+G NL+
Sbjct: 847  HWVAAKRILRYLKHTVKLGLKISKSNSLLVSAFSDADWAGCLDDRRSTGGFAVFIGPNLV 906

Query: 2066 LRSSKKQLT-AHSSTEVEYRQLAYTAAEISWLRSLLQDLRVFLTP-SHIWCDNISSFSLA 2239
              S++KQ T + SSTE EY+ LA   AEI W+++LL +L + +   + +WCDNI +  + 
Sbjct: 907  SWSARKQATVSRSSTEAEYKALANATAEIMWIQTLLHELGIQVPKIAKVWCDNIGAKYMT 966

Query: 2240 SNPVF 2254
            +NPVF
Sbjct: 967  ANPVF 971



 Score = 55.8 bits (133), Expect(2) = 6e-56
 Identities = 24/41 (58%), Positives = 31/41 (75%)
 Frame = +1

Query: 2251 FHARTNHLEVDYHYIREKVVRKEIDVSYICSHYQLPDIFTK 2373
            FHART H+EVDYH++RE+V RK + V YI +  Q+ D FTK
Sbjct: 971  FHARTKHIEVDYHFVRERVARKLLQVEYISTKDQVADGFTK 1011


>gb|EEC76475.1| hypothetical protein OsI_14210 [Oryza sativa Indica Group]
          Length = 391

 Score =  192 bits (489), Expect(2) = 6e-56
 Identities = 114/241 (47%), Positives = 156/241 (64%), Gaps = 19/241 (7%)
 Frame = +2

Query: 1589 SLFQQL---FSVMDLGPLNFFMGLEVVPTSFGIFFTQTKYTLDLLHRAKFQE----STPV 1747
            +L Q+L   F++ DLG L++F+G+EV     G+  +Q KY  DLL R    E    STP+
Sbjct: 86   TLLQELSKDFALKDLGDLHYFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYECKPVSTPL 145

Query: 1748 QSGKK*SLYDGDPLS--DPTKYRSVVGALQYLTLVL------ISLLCQFMHQ-LTTHWIT 1900
             + +K S+ +G  L   D T+YRSVVGALQYLTL        I+ +CQF+H   TTHW  
Sbjct: 146  STSEKLSVNEGTLLGPQDSTQYRSVVGALQYLTLTRPDISFSINKVCQFLHAPTTTHWAA 205

Query: 1901 VKRILRYLKSTPDFGLLY-KPGSLTLQGYSDADYAGDPDSRHSTGGFYIFLGSNLILRSS 2077
            VKRILRY+K T D GL + +  SL + G+SDAD+AG PD R STGGF +FLG NL+  S+
Sbjct: 206  VKRILRYVKYTVDTGLKFCRNPSLLVSGFSDADWAGSPDDRRSTGGFAVFLGPNLVSWSA 265

Query: 2078 KKQLT-AHSSTEVEYRQLAYTAAEISWLRSLLQDLRV-FLTPSHIWCDNISSFSLASNPV 2251
            +KQ T + SS E EY+ LA   AEI W+++LLQ+L V     + +WCDN+ +  L++NP+
Sbjct: 266  RKQATVSRSSIEAEYKALANATAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPI 325

Query: 2252 F 2254
            F
Sbjct: 326  F 326



 Score = 55.1 bits (131), Expect(2) = 6e-56
 Identities = 22/41 (53%), Positives = 33/41 (80%)
 Frame = +1

Query: 2251 FHARTNHLEVDYHYIREKVVRKEIDVSYICSHYQLPDIFTK 2373
            FHART H+EVD+H++RE+V RK ++++YI +  Q+ D FTK
Sbjct: 326  FHARTKHIEVDFHFVRERVARKLLEIAYISTKDQVADGFTK 366


>emb|CAN64288.1| hypothetical protein VITISV_022326 [Vitis vinifera]
          Length = 1508

 Score =  192 bits (488), Expect(2) = 2e-55
 Identities = 108/235 (45%), Positives = 144/235 (61%), Gaps = 13/235 (5%)
 Frame = +2

Query: 1589 SLFQQLFSVMDLGPLNFFMGLEVVPTSFGIFFTQTKYTLDLLHRAKFQES----TPVQSG 1756
            S     F++ DLGPL++F+G++       +   Q KY  DLLHR + + S    TP   G
Sbjct: 1222 SYLHDKFALRDLGPLSYFLGIQAQQQGLVLHLNQQKYIADLLHRTQMEASKPAPTPGSLG 1281

Query: 1757 KK*SLYDGDPLSDPTKYRSVVGALQYLTLV------LISLLCQFMHQLT-THWITVKRIL 1915
            +  S  DG PL DP++YR +VGAL Y+TL        ++  CQFM + +  HW+  KRIL
Sbjct: 1282 RTLSQSDGVPLPDPSEYRRIVGALXYVTLTRXDIAFAVNKACQFMAKPSDVHWLAXKRIL 1341

Query: 1916 RYLKSTPDFGLLYKPG-SLTLQGYSDADYAGDPDSRHSTGGFYIFLGSNLILRSSKKQ-L 2089
            RYLK T   GL ++P  S+ LQGYSDAD+A  PD R ST G+ +FLGSNLI  SS KQ L
Sbjct: 1342 RYLKGTISLGLHFQPSTSMELQGYSDADWASCPDDRRSTSGYXVFLGSNLISWSSSKQRL 1401

Query: 2090 TAHSSTEVEYRQLAYTAAEISWLRSLLQDLRVFLTPSHIWCDNISSFSLASNPVF 2254
             + S  E EYR L    AE+ W++SLLQ+L +  +P  +WCDN S+  L +NPVF
Sbjct: 1402 VSKSXAESEYRGLVSLTAELVWIQSLLQELCLPTSPPVLWCDNQSAAHLVANPVF 1456



 Score = 53.9 bits (128), Expect(2) = 2e-55
 Identities = 22/41 (53%), Positives = 32/41 (78%)
 Frame = +1

Query: 2251 FHARTNHLEVDYHYIREKVVRKEIDVSYICSHYQLPDIFTK 2373
            FH+R+ H+E+D H+IREKV+R+E+ + Y+ S  QL DI TK
Sbjct: 1456 FHSRSKHIELDLHFIREKVLRQELQICYVSSTDQLADILTK 1496


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1431

 Score =  190 bits (483), Expect(2) = 2e-55
 Identities = 109/245 (44%), Positives = 154/245 (62%), Gaps = 16/245 (6%)
 Frame = +2

Query: 1568 IKGLKQESLFQQLFSVMDLGPLNFFMGLEVVPTSFGIFFTQTKYTLDLLHRAKFQE---- 1735
            +K L QE      F++ DLG L++F+G+EV   + GI  TQ KY +D+L R    +    
Sbjct: 1133 LKNLNQE------FALKDLGRLHYFLGIEVKEVNNGIVLTQEKYAMDVLKRVNMSDCKAV 1186

Query: 1736 STPVQSGKK*SLYDGDPLS--DPTKYRSVVGALQYLTLVL------ISLLCQFMHQLTT- 1888
            +TP+   +K S ++G+P    D T+YRS+VGALQYLTL        ++ +CQ++H  TT 
Sbjct: 1187 NTPLSISEKLSAHEGNPFGPEDSTRYRSLVGALQYLTLTRPDLSFSVNKVCQYLHAPTTK 1246

Query: 1889 HWITVKRILRYLKSTPDFGL-LYKPGSLTLQGYSDADYAGDPDSRHSTGGFYIFLGSNLI 2065
            HW   KRILRYLK T   GL + K  SL +  +SDAD+AG  D RHSTGGF +F+G NL+
Sbjct: 1247 HWAAAKRILRYLKHTVKLGLKISKSNSLLVSAFSDADWAGCLDDRHSTGGFAVFIGPNLV 1306

Query: 2066 LRSSKKQLT-AHSSTEVEYRQLAYTAAEISWLRSLLQDLRVFLTP-SHIWCDNISSFSLA 2239
              S++KQ T + SSTE EY+ LA   AEI W+++LL +L +     + +WCDNI +  + 
Sbjct: 1307 SWSARKQATVSRSSTEAEYKALANVTAEIMWIQTLLHELGIQAPKIAKVWCDNIGAKYMT 1366

Query: 2240 SNPVF 2254
            +NPVF
Sbjct: 1367 ANPVF 1371



 Score = 55.8 bits (133), Expect(2) = 2e-55
 Identities = 24/41 (58%), Positives = 31/41 (75%)
 Frame = +1

Query: 2251 FHARTNHLEVDYHYIREKVVRKEIDVSYICSHYQLPDIFTK 2373
            FHART H+EVDYH++RE+V RK + V YI +  Q+ D FTK
Sbjct: 1371 FHARTKHIEVDYHFVRERVARKFLQVEYISTKDQVADGFTK 1411


>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
            sativa Japonica Group]
          Length = 1448

 Score =  196 bits (497), Expect(2) = 5e-55
 Identities = 110/232 (47%), Positives = 152/232 (65%), Gaps = 16/232 (6%)
 Frame = +2

Query: 1607 FSVMDLGPLNFFMGLEVVPTSFGIFFTQTKYTLDLLHRAKFQE----STPVQSGKK*SLY 1774
            F++ DLG L++F+G+EV   S G+  TQ KY  D+L R         STP+   +K +LY
Sbjct: 1158 FTLKDLGDLHYFLGIEVTKVSNGVILTQEKYANDMLKRVNMSNCKPVSTPLSVSEKLTLY 1217

Query: 1775 DGDPL--SDPTKYRSVVGALQYLTLVL------ISLLCQFMHQLTT-HWITVKRILRYLK 1927
            +G PL  +D T+YRS+VGALQYLTL        ++ +CQF+H  TT HWI VKRILRYL 
Sbjct: 1218 EGSPLGPNDATQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTSHWIAVKRILRYLN 1277

Query: 1928 STPDFGL-LYKPGSLTLQGYSDADYAGDPDSRHSTGGFYIFLGSNLILRSSKKQLT-AHS 2101
                 GL ++K  S  + GYSDAD AG  D R STGGF +FLGSNL+  S++KQ T + S
Sbjct: 1278 QCTSLGLHVHKSASTLVHGYSDADGAGSIDDRKSTGGFAVFLGSNLVSWSARKQPTVSRS 1337

Query: 2102 STEVEYRQLAYTAAEISWLRSLLQDLRV-FLTPSHIWCDNISSFSLASNPVF 2254
            STE EY+ +A T AE+ W++++L++L +     + IWCDN+ +  L++NPVF
Sbjct: 1338 STEAEYKAVANTTAELIWVQTVLKELGIESPKAAKIWCDNLGAKYLSANPVF 1389



 Score = 48.9 bits (115), Expect(2) = 5e-55
 Identities = 19/41 (46%), Positives = 31/41 (75%)
 Frame = +1

Query: 2251 FHARTNHLEVDYHYIREKVVRKEIDVSYICSHYQLPDIFTK 2373
            FHA+T H+ VDYH++RE+V +K +++ ++ S  Q+ D FTK
Sbjct: 1389 FHAKTKHIHVDYHFVRERVSQKLLEIDFVPSGDQVADGFTK 1429


>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
          Length = 1448

 Score =  194 bits (494), Expect(2) = 1e-54
 Identities = 110/232 (47%), Positives = 152/232 (65%), Gaps = 16/232 (6%)
 Frame = +2

Query: 1607 FSVMDLGPLNFFMGLEVVPTSFGIFFTQTKYTLDLLHRAKFQESTPVQS----GKK*SLY 1774
            F++ DLG L++F+G+EV   S G+  TQ KY  D+L R      TPV +     +K +LY
Sbjct: 1158 FTLKDLGDLHYFLGIEVTKVSNGVILTQEKYANDMLKRVNMSNCTPVSTPLSVSEKLTLY 1217

Query: 1775 DGDPL--SDPTKYRSVVGALQYLTLVL------ISLLCQFMHQLTT-HWITVKRILRYLK 1927
            +G PL  +D T+YRS+VGALQYLTL        ++ +CQF+H  TT HWI VKRILRYL 
Sbjct: 1218 EGSPLGPNDATQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTSHWIAVKRILRYLN 1277

Query: 1928 STPDFGL-LYKPGSLTLQGYSDADYAGDPDSRHSTGGFYIFLGSNLILRSSKKQLT-AHS 2101
                 GL ++K  S  + GYSDAD AG  D R STGGF +FLGSNL+  S++KQ T + S
Sbjct: 1278 QCTSPGLHVHKSASTLVHGYSDADGAGSIDDRKSTGGFAVFLGSNLVSWSARKQPTVSRS 1337

Query: 2102 STEVEYRQLAYTAAEISWLRSLLQDLRV-FLTPSHIWCDNISSFSLASNPVF 2254
            STE EY+ +A T AE+ W++++L++L +     + IWCDN+ +  L++NPVF
Sbjct: 1338 STEAEYKAVANTTAELIWVQTVLKELGIESPKAAKIWCDNLGAKYLSANPVF 1389



 Score = 48.9 bits (115), Expect(2) = 1e-54
 Identities = 19/41 (46%), Positives = 31/41 (75%)
 Frame = +1

Query: 2251 FHARTNHLEVDYHYIREKVVRKEIDVSYICSHYQLPDIFTK 2373
            FHA+T H+ VDYH++RE+V +K +++ ++ S  Q+ D FTK
Sbjct: 1389 FHAKTKHIHVDYHFVRERVSQKLLEIDFVPSGDQVADGFTK 1429


>emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]
          Length = 1432

 Score =  196 bits (498), Expect(2) = 1e-54
 Identities = 108/231 (46%), Positives = 152/231 (65%), Gaps = 14/231 (6%)
 Frame = +2

Query: 1604 LFSVMDLGPLNFFMGLEVVPTSFGIFFTQTKYTLDLLHRAKFQESTPVQS----GKK*SL 1771
            +F++ DLG L+FF+G+EV      +  +QTKY  DLLHR +  ++ P  +    GK  S 
Sbjct: 1105 VFALRDLGQLSFFLGIEVSYNEGSMTLSQTKYISDLLHRTELFDTKPANTPGAVGKNLSK 1164

Query: 1772 YDGDPLSDPTKYRSVVGALQYLTLV------LISLLCQFMHQLTT-HWITVKRILRYLKS 1930
            +DGDP++D T YRSVVGALQY+TL        ++  CQFM Q TT HW++VKRILRYL+ 
Sbjct: 1165 FDGDPMTDVTHYRSVVGALQYVTLTRPDIAFAVNKACQFMQQPTTAHWLSVKRILRYLRG 1224

Query: 1931 TPDFGLLYKPGS-LTLQGYSDADYAGDPDSRHSTGGFYIFLGSNLILRSSKKQ-LTAHSS 2104
            T   GLL+ P S LT++G++DAD+    D R S+ G+ ++LG NL+  SS KQ + + SS
Sbjct: 1225 TMQDGLLFSPSSNLTIEGFTDADWGAHLDDRRSSSGYLVYLGGNLVSWSSTKQKVVSRSS 1284

Query: 2105 TEVEYRQLAYTAAEISWLRSLLQDLRVFLTP-SHIWCDNISSFSLASNPVF 2254
             E EYR L +  AEI W+++LLQ+L V +     +W DNIS++ +A NPVF
Sbjct: 1285 AESEYRGLVFATAEIVWMQALLQELCVPIPAIPLLWYDNISAYHMAKNPVF 1335



 Score = 47.4 bits (111), Expect(2) = 1e-54
 Identities = 22/51 (43%), Positives = 34/51 (66%)
 Frame = +1

Query: 2251 FHARTNHLEVDYHYIREKVVRKEIDVSYICSHYQLPDIFTKGAFHTTVSFF 2403
            FHART H+E+D H+IR++V+R +I + ++ +  Q  D+ TK   H T S F
Sbjct: 1335 FHARTKHIEIDLHFIRDQVMRGKIQLQFVPTEEQPVDLLTK---HLTSSRF 1382


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1447

 Score =  191 bits (484), Expect(2) = 4e-54
 Identities = 112/232 (48%), Positives = 148/232 (63%), Gaps = 16/232 (6%)
 Frame = +2

Query: 1607 FSVMDLGPLNFFMGLEVVPTSFGIFFTQTKYTLDLLHRAKFQE----STPVQSGKK*SLY 1774
            F++ DLG L++F+G+EV   +  I  TQ KY  DLL R    +    STP+ + +K S +
Sbjct: 1157 FALKDLGDLHYFLGIEVNKVTDEIILTQDKYACDLLRRVNMFDCKPVSTPLSTSEKLSAH 1216

Query: 1775 DGDPLS--DPTKYRSVVGALQYLTLVL------ISLLCQFMHQLTT-HWITVKRILRYLK 1927
            +GD L   D T YRSVVGALQYLTL        ++ +CQF+H  TT HW  VKRILRYLK
Sbjct: 1217 EGDLLGPLDATNYRSVVGALQYLTLTRPDIAFPVNKVCQFLHAPTTVHWAAVKRILRYLK 1276

Query: 1928 STPDFGL-LYKPGSLTLQGYSDADYAGDPDSRHSTGGFYIFLGSNLILRSSKKQLT-AHS 2101
                 GL L K  S+ +  YSDAD+AG  D R STGGF +FLG NL+   ++KQ T + S
Sbjct: 1277 QCTKLGLKLCKSKSMLVSAYSDADWAGSLDDRRSTGGFAVFLGDNLVSWCARKQATVSRS 1336

Query: 2102 STEVEYRQLAYTAAEISWLRSLLQDLRVFLTP-SHIWCDNISSFSLASNPVF 2254
            STE EY+ LA   AEI W+++LL +L+V   P + +WCDN+ +  L+SNPVF
Sbjct: 1337 STESEYKALANATAEIMWVQTLLTELQVQSPPMAKLWCDNLGAKYLSSNPVF 1388



 Score = 50.8 bits (120), Expect(2) = 4e-54
 Identities = 20/41 (48%), Positives = 32/41 (78%)
 Frame = +1

Query: 2251 FHARTNHLEVDYHYIREKVVRKEIDVSYICSHYQLPDIFTK 2373
            FHART H+EVDYH++RE+V +K +++ ++ +  Q+ D FTK
Sbjct: 1388 FHARTKHIEVDYHFVRERVSQKLLEIDFVPTGDQVADGFTK 1428


>emb|CAN83506.1| hypothetical protein VITISV_027576 [Vitis vinifera]
          Length = 1172

 Score =  202 bits (513), Expect(2) = 4e-54
 Identities = 124/242 (51%), Positives = 154/242 (63%), Gaps = 21/242 (8%)
 Frame = +2

Query: 1592 LFQQLFSVMDLGPLNFFMGLEVVPTSFGIFFTQTKYTLDLLHRAKFQESTPVQ----SGK 1759
            L    FS+ DLG L++F+G+E+VP S G   +Q +Y LDLL R    E+ PVQ    SG 
Sbjct: 869  LLANRFSLKDLGKLSYFLGVEIVPNSQGFLLSQRRYLLDLLARTHMSEAKPVQTPLPSGT 928

Query: 1760 K*SLYDGDPLSDPTKYRSVVGALQYLTLVLISL------LCQFMHQLTT-HWITVKRILR 1918
            K SL+ GD LSDPT++R+VVG+LQYL L  + +      L QFMH  TT HW  VKR+LR
Sbjct: 929  KISLHSGDKLSDPTEFRAVVGSLQYLLLTRLDIAFAANKLSQFMHTPTTEHWTLVKRLLR 988

Query: 1919 YLKSTPDFGL-LY--KPGSL-----TLQGYSDADYAGDPDSRHSTGGFYIFLGSNLILRS 2074
            YL  TPD  L LY   P SL      L  YSDAD+AGDPD   STG + ++LG N I  S
Sbjct: 989  YLCGTPDHSLQLYCDSPLSLHAFSDALHAYSDADWAGDPDDFSSTGAYIVYLGRNPISWS 1048

Query: 2075 SKKQLT-AHSSTEVEYRQLAYTAAEISWLRSLLQDLRVFL-TPSHIWCDNISSFSLASNP 2248
            SKKQ   A SSTE EYR +A TAAE++W+ SLL DL + L T   I+CDN+ +  + SNP
Sbjct: 1049 SKKQKNIARSSTEAEYRFVANTAAELNWVSSLLCDLGIQLPTCPVIYCDNVGATQVCSNP 1108

Query: 2249 VF 2254
            VF
Sbjct: 1109 VF 1110



 Score = 39.7 bits (91), Expect(2) = 4e-54
 Identities = 16/41 (39%), Positives = 28/41 (68%)
 Frame = +1

Query: 2251 FHARTNHLEVDYHYIREKVVRKEIDVSYICSHYQLPDIFTK 2373
            FH+R  H+  D+H+IR++V +  + V+++ S  QL D+ TK
Sbjct: 1110 FHSRMKHVAFDFHFIRDQVQKGILRVAHVSSTDQLADLLTK 1150


>gb|ABF96081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1180

 Score =  187 bits (475), Expect(2) = 6e-54
 Identities = 111/235 (47%), Positives = 151/235 (64%), Gaps = 16/235 (6%)
 Frame = +2

Query: 1598 QQLFSVMDLGPLNFFMGLEVVPTSFGIFFTQTKYTLDLLHRAKFQESTPVQSG----KK* 1765
            Q+ F++ DLG L++F+G+EV   S GI  TQ KY  DLL R    +  PV +     +K 
Sbjct: 781  QKEFALKDLGDLHYFLGIEVNKISNGIILTQEKYANDLLKRVGMIDCKPVSASLSTSEKL 840

Query: 1766 SLYDGD--PLSDPTKYRSVVGALQYLTLVL------ISLLCQFMHQLTT-HWITVKRILR 1918
            +L++GD   L+D + YRSVVGALQYLTL        ++ +CQF+H  TT HW TVKRILR
Sbjct: 841  TLHEGDLLGLNDASNYRSVVGALQYLTLTRPDIAFPVNKVCQFLHAPTTIHWATVKRILR 900

Query: 1919 YLKSTPDFGL-LYKPGSLTLQGYSDADYAGDPDSRHSTGGFYIFLGSNLILRSSKKQLT- 2092
            YLK     GL + K  S+ + GYSD D+AG+ D R ST GF +FLG NL+  +++KQ T 
Sbjct: 901  YLKQCTKLGLKISKSKSMLVSGYSDTDWAGNVDDRRSTRGFAVFLGDNLVSWNARKQATV 960

Query: 2093 AHSSTEVEYRQLAYTAAEISWLRSLLQDLRVFL-TPSHIWCDNISSFSLASNPVF 2254
            + SSTE EY+ LA   AEI W+++LL +L V     + +WCDN+ +  L+SNPVF
Sbjct: 961  SRSSTESEYKVLANATAEIMWIQTLLAELGVSSPLMARLWCDNLGAKYLSSNPVF 1015



 Score = 53.9 bits (128), Expect(2) = 6e-54
 Identities = 22/49 (44%), Positives = 35/49 (71%)
 Frame = +1

Query: 2251 FHARTNHLEVDYHYIREKVVRKEIDVSYICSHYQLPDIFTKGAFHTTVS 2397
            FHART H+EVDYH++RE+V R+ ++V ++ +  Q+ D FTK     T++
Sbjct: 1015 FHARTKHIEVDYHFVRERVQRRLLEVDFVPTGDQVADGFTKALSEVTIA 1063


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
          Length = 1313

 Score =  186 bits (473), Expect(2) = 9e-54
 Identities = 104/232 (44%), Positives = 150/232 (64%), Gaps = 16/232 (6%)
 Frame = +2

Query: 1607 FSVMDLGPLNFFMGLEVVPTSFGIFFTQTKYTLDLLHRAKFQE----STPVQSGKK*SLY 1774
            F++ DLG LN+F+G+EV     GI  TQ KY  DLL +    +    STP+ + +K S++
Sbjct: 1023 FALKDLGDLNYFLGIEVNKVRDGIILTQDKYASDLLKKVGMSDCKPISTPLSTSEKLSIH 1082

Query: 1775 DGDPLS--DPTKYRSVVGALQYLTLVL------ISLLCQFMHQLTT-HWITVKRILRYLK 1927
            +G PL   D T+YRS+VGALQYLTL        ++ +CQF+H  TT HW  VKRILRY+K
Sbjct: 1083 EGSPLGEKDITQYRSIVGALQYLTLTRPDIAFSVNKVCQFLHAPTTLHWAAVKRILRYIK 1142

Query: 1928 STPDFGL-LYKPGSLTLQGYSDADYAGDPDSRHSTGGFYIFLGSNLILRSSKKQLT-AHS 2101
               + GL +++  S  +  +SDAD+AG  D R STGGF +FLGSNL+  S++KQ T + S
Sbjct: 1143 QCTNLGLHIHRSDSTLVSAFSDADWAGSVDDRKSTGGFAVFLGSNLVSWSARKQPTVSRS 1202

Query: 2102 STEVEYRQLAYTAAEISWLRSLLQDLRV-FLTPSHIWCDNISSFSLASNPVF 2254
            STE EY+ LA   AE+ W++ LL ++ +     + +WCDN+ +  L++NP+F
Sbjct: 1203 STESEYKALANATAELIWVQILLTEISIKSPRAAKLWCDNLGAKYLSANPIF 1254



 Score = 53.9 bits (128), Expect(2) = 9e-54
 Identities = 21/41 (51%), Positives = 32/41 (78%)
 Frame = +1

Query: 2251 FHARTNHLEVDYHYIREKVVRKEIDVSYICSHYQLPDIFTK 2373
            FHART H+EVDYH++R++V +K +D+ Y+ +  Q+ D FTK
Sbjct: 1254 FHARTKHIEVDYHFVRDRVAKKLLDIEYVPTGDQVADGFTK 1294