BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia22_contig00002063
         (724 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   241   2e-61
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                241   2e-61
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   234   3e-59
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   234   3e-59
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               231   1e-58
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   228   2e-57
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298...   224   3e-56
emb|CAB72467.1| putative protein [Arabidopsis thaliana]               223   7e-56
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...   219   7e-55
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   215   1e-53
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   210   3e-52
gb|AAF79812.1|AC020646_35 T32E20.6 [Arabidopsis thaliana]             208   1e-51
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       207   3e-51
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   207   3e-51
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   206   9e-51
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ...   205   1e-50
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li...   205   1e-50
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   204   2e-50
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00...   204   2e-50
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           204   2e-50

>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  241 bits (615), Expect = 2e-61
 Identities = 111/208 (53%), Positives = 148/208 (71%)
 Frame = +2

Query: 2    GPDGYTAHFFKATWDLTGKDVTRAILSFFKSGSMLREANATAITLVPKSDSPNSMSDFRP 181
            GPDGYT+ FFKATW LTG D   AI SFF  G + +  NAT + L+PK D    M D+RP
Sbjct: 769  GPDGYTSEFFKATWSLTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYRP 828

Query: 182  IACCNTVYKCISKIIANRLKCFMPDFIDQAQTAFVKDRSIMDNILLAQEILRDYHRDNKP 361
            I+CCN +YK ISKI+ANRLK  +P FI Q Q+AFVK+R +M+N+LLA E+++DYH+++  
Sbjct: 829  ISCCNVLYKVISKILANRLKLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHKESVT 888

Query: 362  PRCAIKLDWMKAYDTINWNFLFNILEAIGVPGMLLQCIKQCVSTSMFSISINGGLEDYFA 541
            PRCA+K+D  KA+D++ W FL N LEA+  P      IK C+ST+ FS+ +NG L  +F 
Sbjct: 889  PRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWIKLCISTATFSVQVNGELAGFFG 948

Query: 542  AERGLRQGDPISPYLFIFGMEVLSRMLN 625
            + RGLRQG  +SPYLF+  M VLS M++
Sbjct: 949  SSRGLRQGCALSPYLFVICMNVLSHMID 976


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score =  241 bits (614), Expect = 2e-61
 Identities = 110/208 (52%), Positives = 150/208 (72%)
 Frame = +2

Query: 2   GPDGYTAHFFKATWDLTGKDVTRAILSFFKSGSMLREANATAITLVPKSDSPNSMSDFRP 181
           GPDGYT+ FFKATW +TG+D   AI SFF  G + +  NAT + L+PK D    M D+RP
Sbjct: 45  GPDGYTSEFFKATWSITGQDFIAAIKSFFIKGFLPKGLNATILALIPKKDEATLMRDYRP 104

Query: 182 IACCNTVYKCISKIIANRLKCFMPDFIDQAQTAFVKDRSIMDNILLAQEILRDYHRDNKP 361
           I+CCN +YK ISKIIANRLK  +P FI Q Q+AFV++R +++N+LLA E+++DYH+D+  
Sbjct: 105 ISCCNVIYKVISKIIANRLKVMLPTFILQNQSAFVRERLLIENVLLATELVKDYHKDSIS 164

Query: 362 PRCAIKLDWMKAYDTINWNFLFNILEAIGVPGMLLQCIKQCVSTSMFSISINGGLEDYFA 541
           PRCA+K+D  KA+D++ W FL N LEA+  P      IK C+ST+ FS+ +NG L  +F 
Sbjct: 165 PRCAMKIDISKAFDSVQWQFLLNTLEALNFPENFCHWIKLCISTATFSVQVNGELAGFFG 224

Query: 542 AERGLRQGDPISPYLFIFGMEVLSRMLN 625
           ++RGLRQG  +SPYLF+  M VLS M++
Sbjct: 225 SKRGLRQGCALSPYLFVICMNVLSHMID 252


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  234 bits (596), Expect = 3e-59
 Identities = 107/222 (48%), Positives = 150/222 (67%)
 Frame = +2

Query: 2    GPDGYTAHFFKATWDLTGKDVTRAILSFFKSGSMLREANATAITLVPKSDSPNSMSDFRP 181
            GPDGYT+ FFKATW++ G + T A+ SFF  G + +  N+T + L+PK      M D+RP
Sbjct: 472  GPDGYTSEFFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRP 531

Query: 182  IACCNTVYKCISKIIANRLKCFMPDFIDQAQTAFVKDRSIMDNILLAQEILRDYHRDNKP 361
            I+CCN +YK ISKIIANRLK  +P FI   Q+AFVKDR +++N+LLA E+++DYH+D   
Sbjct: 532  ISCCNVLYKVISKIIANRLKLVLPKFIAGNQSAFVKDRLLIENLLLATELVKDYHKDTIS 591

Query: 362  PRCAIKLDWMKAYDTINWNFLFNILEAIGVPGMLLQCIKQCVSTSMFSISINGGLEDYFA 541
             RCAIK+D  KA+D++ W FL N+   +G P   +  I  C++T+ FS+ +NG L  YF 
Sbjct: 592  TRCAIKIDISKAFDSVQWPFLINVFTILGFPREFIHWINICITTASFSVQVNGELAGYFQ 651

Query: 542  AERGLRQGDPISPYLFIFGMEVLSRMLNRMTNLLAYRSHRVC 667
            + RGLRQG  +SPYLF+  M+VLS+ML++      +  H  C
Sbjct: 652  SSRGLRQGCALSPYLFVICMDVLSKMLDKAAAARHFGYHPKC 693


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score =  234 bits (596), Expect = 3e-59
 Identities = 107/222 (48%), Positives = 154/222 (69%)
 Frame = +2

Query: 2   GPDGYTAHFFKATWDLTGKDVTRAILSFFKSGSMLREANATAITLVPKSDSPNSMSDFRP 181
           GPDGYT+ F+KA+W++ G +V  AI SFF  G + +  N+T + L+PK      + D+RP
Sbjct: 193 GPDGYTSEFYKASWEIIGDEVIIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRP 252

Query: 182 IACCNTVYKCISKIIANRLKCFMPDFIDQAQTAFVKDRSIMDNILLAQEILRDYHRDNKP 361
           I+CCN +YK ISKI+ANRLK  +P FI   Q+AFVKDR +++N+LLA E+++DYH+D+  
Sbjct: 253 ISCCNVLYKAISKILANRLKRILPKFIVGNQSAFVKDRLLIENVLLATELVKDYHKDSIS 312

Query: 362 PRCAIKLDWMKAYDTINWNFLFNILEAIGVPGMLLQCIKQCVSTSMFSISINGGLEDYFA 541
            RCA+K+D  KA+D++ W+FL ++L A+  PG  +  I  C+ST+ FSI +NG L  YF 
Sbjct: 313 TRCAMKIDISKAFDSLQWSFLTHVLAAMNFPGEFIHWISLCMSTASFSIQVNGELAGYFR 372

Query: 542 AERGLRQGDPISPYLFIFGMEVLSRMLNRMTNLLAYRSHRVC 667
           + RGLRQG  +SPYLF+  M+VLSRML++      +  H  C
Sbjct: 373 SARGLRQGCSLSPYLFVISMDVLSRMLDKAAGAREFGYHPRC 414


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  231 bits (590), Expect = 1e-58
 Identities = 105/222 (47%), Positives = 155/222 (69%)
 Frame = +2

Query: 2   GPDGYTAHFFKATWDLTGKDVTRAILSFFKSGSMLREANATAITLVPKSDSPNSMSDFRP 181
           GPDGYT+ F+KATWD+ G++ T  + SFF+ G + +  N+  + L+PK  +   M D+RP
Sbjct: 119 GPDGYTSEFYKATWDIIGQEFTLPVQSFFQKGFLPKGINSIILALIPKKLAAKEMRDYRP 178

Query: 182 IACCNTVYKCISKIIANRLKCFMPDFIDQAQTAFVKDRSIMDNILLAQEILRDYHRDNKP 361
           I+CCN +YK ISKIIANRLK  +P FI + Q+AFVKDR +++N+LLA E+++DYH+D+  
Sbjct: 179 ISCCNVLYKVISKIIANRLKLLLPRFIAENQSAFVKDRLLIENLLLATELVKDYHKDSIS 238

Query: 362 PRCAIKLDWMKAYDTINWNFLFNILEAIGVPGMLLQCIKQCVSTSMFSISINGGLEDYFA 541
            RCAIK+D  KA+D++ W+FL N L A+      +  I  C++T+ FS+ +NG L  YF 
Sbjct: 239 ARCAIKIDISKAFDSVQWSFLTNTLVAMNFSPTFIHWINLCITTASFSVQVNGDLVGYFQ 298

Query: 542 AERGLRQGDPISPYLFIFGMEVLSRMLNRMTNLLAYRSHRVC 667
           ++RGLRQG  +SPYLF+  M+VLS+ML++   +  +  H  C
Sbjct: 299 SKRGLRQGCSLSPYLFVICMDVLSKMLDKAAGVRKFGFHPKC 340


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
            72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  228 bits (581), Expect = 2e-57
 Identities = 105/222 (47%), Positives = 148/222 (66%)
 Frame = +2

Query: 2    GPDGYTAHFFKATWDLTGKDVTRAILSFFKSGSMLREANATAITLVPKSDSPNSMSDFRP 181
            GPDGYTA F+K  W++ G +   AI SFF  G + +  N+T + L+PK      M D+RP
Sbjct: 360  GPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKDYRP 419

Query: 182  IACCNTVYKCISKIIANRLKCFMPDFIDQAQTAFVKDRSIMDNILLAQEILRDYHRDNKP 361
            I+CCN +YK ISKIIANRLK  +P FI   Q+AFVKDR +++N+LLA EI++DYH+D+  
Sbjct: 420  ISCCNVLYKVISKIIANRLKLVLPKFIVGNQSAFVKDRLLIENVLLATEIVKDYHKDSVS 479

Query: 362  PRCAIKLDWMKAYDTINWNFLFNILEAIGVPGMLLQCIKQCVSTSMFSISINGGLEDYFA 541
             RCA+K+D  KA+D++ W FL N+LEA+  P      I  C++T+ FS+ +NG L   F+
Sbjct: 480  SRCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWITLCITTASFSVQVNGELAGVFS 539

Query: 542  AERGLRQGDPISPYLFIFGMEVLSRMLNRMTNLLAYRSHRVC 667
            + R LRQG  +SPYLF+  M+VLS+ML++      +  H  C
Sbjct: 540  SARELRQGCSLSPYLFVISMDVLSKMLDKAVGARQFGYHPKC 581


>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
           subsp. vesca]
          Length = 958

 Score =  224 bits (570), Expect = 3e-56
 Identities = 110/224 (49%), Positives = 148/224 (66%), Gaps = 2/224 (0%)
 Frame = +2

Query: 2   GPDGYTAHFFKATWDLTGKDVTRA-ILSFFKSGSMLREANATAITLVPKSDSPNSMSDFR 178
           GPDG+   FF+  W + G +V  A +  FF  GS+L E N+T ITLVPK  +P +MSDFR
Sbjct: 292 GPDGFNGCFFQKAWLVIGDNVVAAAVKEFFSYGSLLMELNSTIITLVPKVANPTTMSDFR 351

Query: 179 PIACCNTVYKCISKIIANRLKCFMPDFIDQAQTAFVKDRSIMDNILLAQEILRDYHRDNK 358
           PI+CCNT YK I+K++ANRLK  +   +  +Q+ F+  R I DNILLAQEI+ DYH+ + 
Sbjct: 352 PISCCNTFYKIIAKLLANRLKGTLHLIVGPSQSTFIPGRRIGDNILLAQEIICDYHKADG 411

Query: 359 PPRCAIKLDWMKAYDTINWNFLFNILEAIGVPGMLLQCIKQCVSTSMFSISINGGLEDYF 538
            PRC   +D MKA DT+ W+F+   L+A  +P  L+  IK C+S++ FS+ +NG L  +F
Sbjct: 412 QPRCTFMVDMMKANDTVEWDFIIATLQAFNIPSTLIGWIKSCISSAKFSVCVNGELAGFF 471

Query: 539 AAERGLRQGDPISPYLFIFGMEVLSRMLNRMTNLL-AYRSHRVC 667
           A  RGLRQGDP+SPYLF+  MEVLS  + R  N    +R H  C
Sbjct: 472 ARRRGLRQGDPLSPYLFVIAMEVLSLCIQRRINCSPCFRYHWRC 515


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score =  223 bits (567), Expect = 7e-56
 Identities = 101/221 (45%), Positives = 152/221 (68%), Gaps = 2/221 (0%)
 Frame = +2

Query: 2   GPDGYTAHFFKATWDLTGKDVTRAILSFFKSGSMLREANATAITLVPKSDSPNSMSDFRP 181
           GPDG+T+ FFK +W++ G +   AI SFF  G + +  N+T + L+PK      M D+RP
Sbjct: 25  GPDGFTSEFFKESWEILGPEFILAIQSFFALGFLPKGVNSTILALIPKKLESKEMKDYRP 84

Query: 182 IACCNTVYKCISKIIANRLKCFMPDFIDQAQTAFVKDRSIMDNILLAQEILRDYHRDNKP 361
           I+CCN +YK ISKI+ANRLK  +P FI   Q++FVKDR +++N+LLA ++++DYH+D+  
Sbjct: 85  ISCCNVMYKVISKILANRLKLLLPQFIAGNQSSFVKDRLLIENVLLATDLVKDYHKDSIS 144

Query: 362 PRCAIKLDWMKAYDTINWNFLFNILEAIGVPGMLLQCIKQCVSTSMFSISINGGLEDYFA 541
            RCAIK+D  KA D++ W+FL N L A+  P M +  I+ C++T  FS+ +NG L  +F 
Sbjct: 145 ERCAIKIDISKASDSVQWSFLINTLTAMHFPEMFIHWIRLCITTPSFSVQVNGELAGFFQ 204

Query: 542 AERGLRQGDPISPYLFIFGMEVLSRMLNRMTNL--LAYRSH 658
           + RGLRQG  +SPYLF+  M+VLS++L+++  +  + Y  H
Sbjct: 205 SSRGLRQGCALSPYLFVICMDVLSKLLDKVVGIGRIGYHPH 245


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score =  219 bits (558), Expect = 7e-55
 Identities = 100/209 (47%), Positives = 141/209 (67%)
 Frame = +2

Query: 2    GPDGYTAHFFKATWDLTGKDVTRAILSFFKSGSMLREANATAITLVPKSDSPNSMSDFRP 181
            GPDGYT  FF+ TW + G++VT AI SFF  G + +  N+T + L+PK      M D+RP
Sbjct: 738  GPDGYTVEFFRETWSVIGQEVTMAIKSFFTYGFLPKGLNSTILALIPKRTYAKEMKDYRP 797

Query: 182  IACCNTVYKCISKIIANRLKCFMPDFIDQAQTAFVKDRSIMDNILLAQEILRDYHRDNKP 361
            I+CCN +YK ISK++ANRLKC +P+FI   Q+AF+ DR +M+N+LLA E+++DYH+D   
Sbjct: 798  ISCCNVLYKAISKLLANRLKCLLPEFIAPNQSAFISDRLLMENLLLASELVKDYHKDGLS 857

Query: 362  PRCAIKLDWMKAYDTINWNFLFNILEAIGVPGMLLQCIKQCVSTSMFSISINGGLEDYFA 541
            PRCA+K+D  KA+D++ W FL N L A+ +P   +  I  C+ST+ FS+ +N        
Sbjct: 858  PRCAMKIDLSKAFDSVQWPFLLNTLAALDIPEKFIHWINLCISTASFSVQVN-------- 909

Query: 542  AERGLRQGDPISPYLFIFGMEVLSRMLNR 628
               GLRQG  +SPYLF+  M VLS ML++
Sbjct: 910  ---GLRQGCSLSPYLFVICMNVLSAMLDK 935


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  215 bits (548), Expect = 1e-53
 Identities = 98/209 (46%), Positives = 144/209 (68%)
 Frame = +2

Query: 2    GPDGYTAHFFKATWDLTGKDVTRAILSFFKSGSMLREANATAITLVPKSDSPNSMSDFRP 181
            GPDGYT  FFK  W + G+D+  AI SFF  G + +  N T + L+ K    + M D+RP
Sbjct: 619  GPDGYTVEFFKTAWPVLGRDLVIAIQSFFLKGFLPKGINTTILALISKKHEVSGMKDYRP 678

Query: 182  IACCNTVYKCISKIIANRLKCFMPDFIDQAQTAFVKDRSIMDNILLAQEILRDYHRDNKP 361
            I+CCN +YK +SK++ANRLK  +P  I   Q+AF+KDR +M+N+LLA E+++DYH+++  
Sbjct: 679  ISCCNVLYKIVSKLMANRLKEILPASIAPNQSAFIKDRLMMENLLLASELVKDYHKESIS 738

Query: 362  PRCAIKLDWMKAYDTINWNFLFNILEAIGVPGMLLQCIKQCVSTSMFSISINGGLEDYFA 541
             R A+K+D  KA+D + W FL N+L+AI +P M +  I+ C+ T+ FS+ +NG L  +F 
Sbjct: 739  SRSALKIDISKAFDFVQWPFLINVLKAIHLPEMFIHWIELCIGTASFSVQVNGELSGFFR 798

Query: 542  AERGLRQGDPISPYLFIFGMEVLSRMLNR 628
            +ERGLRQG  +SPYL++  M VLS ML++
Sbjct: 799  SERGLRQGCSLSPYLYVICMNVLSCMLDK 827


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  210 bits (535), Expect = 3e-52
 Identities = 93/207 (44%), Positives = 145/207 (70%)
 Frame = +2

Query: 2    GPDGYTAHFFKATWDLTGKDVTRAILSFFKSGSMLREANATAITLVPKSDSPNSMSDFRP 181
            GPDGYT+ FFK TW + G  +  A+  FF+SG +L + N+TA+T+VPK  + + +++FRP
Sbjct: 465  GPDGYTSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRP 524

Query: 182  IACCNTVYKCISKIIANRLKCFMPDFIDQAQTAFVKDRSIMDNILLAQEILRDYHRDNKP 361
            I+CCN +YK ISK++A RL+  +P +I  +Q+AFVK R + +N+LLA E+++ + + N  
Sbjct: 525  ISCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGRLLTENVLLATELVQGFGQANIS 584

Query: 362  PRCAIKLDWMKAYDTINWNFLFNILEAIGVPGMLLQCIKQCVSTSMFSISINGGLEDYFA 541
             R  +K+D  KA+D++ W F+   L+A   P   +  IKQC++++ FSI+++G L  YF 
Sbjct: 585  SRGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWIKQCITSTSFSINVSGSLCGYFK 644

Query: 542  AERGLRQGDPISPYLFIFGMEVLSRML 622
              +GLRQGDP+SP LF+  ME+LSR+L
Sbjct: 645  GSKGLRQGDPLSPSLFVIAMEILSRLL 671


>gb|AAF79812.1|AC020646_35 T32E20.6 [Arabidopsis thaliana]
          Length = 458

 Score =  208 bits (530), Expect = 1e-51
 Identities = 99/224 (44%), Positives = 149/224 (66%), Gaps = 2/224 (0%)
 Frame = +2

Query: 2   GPDGYTAHFFKATWDLTGKDVTRAILSFFKSGSMLREANATAITLVPKSDSPNSMSDFRP 181
           GPD YT  F+K+TWD+ GK+   AI SFF  G + +  N+T + L+PK  + N M D+RP
Sbjct: 213 GPDSYTMEFYKSTWDIIGKEFILAIKSFFVKGFLPKAINSTILALIPKKATTNEMKDYRP 272

Query: 182 IACCNTVYKCISKIIANRLKCFMPDFIDQAQTAFVKDRSIMDNILLAQEILRDYHRDNKP 361
           I+CCN ++K I KIIAN LK  +P+F+   Q+AFV+DR +++N+LLA E+++DYH+++  
Sbjct: 273 ISCCNVIFKVILKIIANPLKRVLPNFVVGNQSAFVQDRLLIENVLLATELVKDYHKESVS 332

Query: 362 PRCAIKLDWMKAYDTINWNFLFNILEAIGVPGMLLQCIKQCVSTSMFSISINGGLEDYFA 541
             CAIK+D  KA+D++ W+ L  +LEA+  P   +  I  CV+T+ FS+ +NG L  YF 
Sbjct: 333 TGCAIKIDISKAFDSVQWSVLRKVLEAMKFPLFFIHWIMLCVTTTSFSVQVNGELVGYFN 392

Query: 542 AERGLRQ--GDPISPYLFIFGMEVLSRMLNRMTNLLAYRSHRVC 667
           + RGLRQ     +S YLF+  M+VLS++L++   L  +  H  C
Sbjct: 393 SVRGLRQRCSLSLSLYLFVVSMDVLSKLLDKAVGLRKFGYHPRC 436


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  207 bits (527), Expect = 3e-51
 Identities = 94/208 (45%), Positives = 140/208 (67%)
 Frame = +2

Query: 2    GPDGYTAHFFKATWDLTGKDVTRAILSFFKSGSMLREANATAITLVPKSDSPNSMSDFRP 181
            GPDG+TA FF  +W + G +VT AI  FF SG +L++ NAT I L+PK  +P   SDFRP
Sbjct: 466  GPDGFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRP 525

Query: 182  IACCNTVYKCISKIIANRLKCFMPDFIDQAQTAFVKDRSIMDNILLAQEILRDYHRDNKP 361
            I+C NT+YK I++++ +RL+  +   I  AQ+AF+  RS+ +N+LLA +++  Y+  N  
Sbjct: 526  ISCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNIS 585

Query: 362  PRCAIKLDWMKAYDTINWNFLFNILEAIGVPGMLLQCIKQCVSTSMFSISINGGLEDYFA 541
            PR  +K+D  KA+D++ W F+   L A+ +P   +  I QC+ST  F++SINGG   +F 
Sbjct: 586  PRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCISTPTFTVSINGGNGGFFK 645

Query: 542  AERGLRQGDPISPYLFIFGMEVLSRMLN 625
            + +GLRQGDP+SPYLF+  ME  S +L+
Sbjct: 646  STKGLRQGDPLSPYLFVLAMEAFSNLLH 673


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  207 bits (527), Expect = 3e-51
 Identities = 100/222 (45%), Positives = 143/222 (64%)
 Frame = +2

Query: 2    GPDGYTAHFFKATWDLTGKDVTRAILSFFKSGSMLREANATAITLVPKSDSPNSMSDFRP 181
            G DG+ + FFK +W +  +++   IL FF++G M +  N TA+TL+PK D      D+RP
Sbjct: 460  GLDGFNSVFFKKSWLVIKQEIYEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRP 519

Query: 182  IACCNTVYKCISKIIANRLKCFMPDFIDQAQTAFVKDRSIMDNILLAQEILRDYHRDNKP 361
            IACC+T+YK ISKI+  RL+  + + +D AQT F+ +R I DNILLA E++R Y+R +  
Sbjct: 520  IACCSTLYKIISKILTKRLQAVITEVVDCAQTGFIPERHIGDNILLATELIRGYNRRHVS 579

Query: 362  PRCAIKLDWMKAYDTINWNFLFNILEAIGVPGMLLQCIKQCVSTSMFSISINGGLEDYFA 541
            PRC IK+D  KAYD++ W FL ++L+ +G P M ++ I  CV T  +SI +NG     F 
Sbjct: 580  PRCVIKVDIRKAYDSVEWVFLESMLKELGFPSMFIRWIMACVKTVSYSILLNGIPSIPFD 639

Query: 542  AERGLRQGDPISPYLFIFGMEVLSRMLNRMTNLLAYRSHRVC 667
            A++GLRQGDP+SP+LF   ME LSR +  M     +  H  C
Sbjct: 640  AQKGLRQGDPLSPFLFALSMEYLSRCMGNMCKDPEFNFHPKC 681


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
           [Arabidopsis thaliana]
          Length = 1164

 Score =  206 bits (523), Expect = 9e-51
 Identities = 96/207 (46%), Positives = 142/207 (68%)
 Frame = +2

Query: 2   GPDGYTAHFFKATWDLTGKDVTRAILSFFKSGSMLREANATAITLVPKSDSPNSMSDFRP 181
           GPDG++  FF A W + G +VT AI  FF SG +L++ NAT + L+PK  + +SMSDFRP
Sbjct: 363 GPDGFSPEFFCACWPIIGGEVTEAIHEFFTSGKLLKQWNATNLVLIPKITNASSMSDFRP 422

Query: 182 IACCNTVYKCISKIIANRLKCFMPDFIDQAQTAFVKDRSIMDNILLAQEILRDYHRDNKP 361
           I+C NTVYK ISK++ +RLK F+P  I  +Q+AF+  R  ++N+LLA E++  Y++ N  
Sbjct: 423 ISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAFMPGRLFLENVLLATELVHGYNKKNIA 482

Query: 362 PRCAIKLDWMKAYDTINWNFLFNILEAIGVPGMLLQCIKQCVSTSMFSISINGGLEDYFA 541
           P   +K+D  KA+D++ W+F+ + L A+ VP      I +C+ST+ FS+ +NG    +F 
Sbjct: 483 PSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECLSTASFSVILNGHSAGHFW 542

Query: 542 AERGLRQGDPISPYLFIFGMEVLSRML 622
           + +GLRQGDP+SPYLF+  MEV S +L
Sbjct: 543 SSKGLRQGDPMSPYLFVLAMEVFSGLL 569


>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 893

 Score =  205 bits (522), Expect = 1e-50
 Identities = 91/207 (43%), Positives = 140/207 (67%)
 Frame = +2

Query: 2    GPDGYTAHFFKATWDLTGKDVTRAILSFFKSGSMLREANATAITLVPKSDSPNSMSDFRP 181
            GPDGY++ FFK  W + G +VT A+  FF+SG +L++ NAT + L+PK  + + M+DFRP
Sbjct: 467  GPDGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRP 526

Query: 182  IACCNTVYKCISKIIANRLKCFMPDFIDQAQTAFVKDRSIMDNILLAQEILRDYHRDNKP 361
            I+C NT+YK I+K++ +RLK  + + I  +Q+AF+  R + +N+LLA EI+  Y+  N  
Sbjct: 527  ISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNIS 586

Query: 362  PRCAIKLDWMKAYDTINWNFLFNILEAIGVPGMLLQCIKQCVSTSMFSISINGGLEDYFA 541
             R  +K+D  KA+D++ W+F+ +   A+ VP   +  I QC+ST  FS+ +NG    +F 
Sbjct: 587  SRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFK 646

Query: 542  AERGLRQGDPISPYLFIFGMEVLSRML 622
            + +GLRQGDP+SPYLF+  MEV S +L
Sbjct: 647  SNKGLRQGDPLSPYLFVLAMEVFSSLL 673


>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
            [Arabidopsis thaliana]
          Length = 893

 Score =  205 bits (522), Expect = 1e-50
 Identities = 91/207 (43%), Positives = 140/207 (67%)
 Frame = +2

Query: 2    GPDGYTAHFFKATWDLTGKDVTRAILSFFKSGSMLREANATAITLVPKSDSPNSMSDFRP 181
            GPDGY++ FFK  W + G +VT A+  FF+SG +L++ NAT + L+PK  + + M+DFRP
Sbjct: 467  GPDGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRP 526

Query: 182  IACCNTVYKCISKIIANRLKCFMPDFIDQAQTAFVKDRSIMDNILLAQEILRDYHRDNKP 361
            I+C NT+YK I+K++ +RLK  + + I  +Q+AF+  R + +N+LLA EI+  Y+  N  
Sbjct: 527  ISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNIS 586

Query: 362  PRCAIKLDWMKAYDTINWNFLFNILEAIGVPGMLLQCIKQCVSTSMFSISINGGLEDYFA 541
             R  +K+D  KA+D++ W+F+ +   A+ VP   +  I QC+ST  FS+ +NG    +F 
Sbjct: 587  SRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFK 646

Query: 542  AERGLRQGDPISPYLFIFGMEVLSRML 622
            + +GLRQGDP+SPYLF+  MEV S +L
Sbjct: 647  SNKGLRQGDPLSPYLFVLAMEVFSSLL 673


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
           thaliana]
          Length = 1072

 Score =  204 bits (519), Expect = 2e-50
 Identities = 92/207 (44%), Positives = 142/207 (68%)
 Frame = +2

Query: 2   GPDGYTAHFFKATWDLTGKDVTRAILSFFKSGSMLREANATAITLVPKSDSPNSMSDFRP 181
           GPDGY+  FF+ TW + G +V  AI  FF SG +L++ NAT + L+PK+ +  ++S+FRP
Sbjct: 326 GPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRP 385

Query: 182 IACCNTVYKCISKIIANRLKCFMPDFIDQAQTAFVKDRSIMDNILLAQEILRDYHRDNKP 361
           I+C NT+YK ISK++ +RL+  +   I  +Q+AF+  RS+ +N+LLA E++  Y+R N  
Sbjct: 386 ISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNIS 445

Query: 362 PRCAIKLDWMKAYDTINWNFLFNILEAIGVPGMLLQCIKQCVSTSMFSISINGGLEDYFA 541
           PR  +K+D  KA+D++ W F+   L A+ +P   +  I QC++T  F+IS+NG    +F 
Sbjct: 446 PRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTPSFTISVNGATGGFFR 505

Query: 542 AERGLRQGDPISPYLFIFGMEVLSRML 622
           + +GLRQGDP+SPYLF+  MEV S++L
Sbjct: 506 STKGLRQGDPLSPYLFVLAMEVFSKLL 532


>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
            thaliana]
          Length = 1253

 Score =  204 bits (519), Expect = 2e-50
 Identities = 93/212 (43%), Positives = 143/212 (67%), Gaps = 4/212 (1%)
 Frame = +2

Query: 2    GPDGYTAHFFKATWDLTGKDVTRAILSFFKSGSMLREANATAITLVPKSDSPNSMSDFRP 181
            GPDG+   FFK TW + G +VT A+  FF S  +L++ NAT + L+PK  + + M+DFRP
Sbjct: 415  GPDGFPVEFFKETWSVIGTEVTDAVSEFFTSSVLLKQWNATTLVLIPKITNASKMNDFRP 474

Query: 182  IACCN----TVYKCISKIIANRLKCFMPDFIDQAQTAFVKDRSIMDNILLAQEILRDYHR 349
            I+C +    T+YK I++++ NRL+C +   I   Q+AF+  R + +N+LLA E+++ Y+R
Sbjct: 475  ISCNDFGPITLYKVIARLLTNRLQCLLSQVISPFQSAFLPGRFLAENVLLATELVQGYNR 534

Query: 350  DNKPPRCAIKLDWMKAYDTINWNFLFNILEAIGVPGMLLQCIKQCVSTSMFSISINGGLE 529
             N  PR  +K+D  KA+D+I W+F+ + L+AIG+P   +  I QC+ST  FS+ +NG   
Sbjct: 535  QNIDPRGMLKVDLRKAFDSIRWDFIISALKAIGIPDRFVYWITQCISTPTFSVCVNGNTG 594

Query: 530  DYFAAERGLRQGDPISPYLFIFGMEVLSRMLN 625
             +F + RGLRQG+P+SP+LF+  MEV S +LN
Sbjct: 595  GFFKSTRGLRQGNPLSPFLFVLAMEVFSSLLN 626


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  204 bits (519), Expect = 2e-50
 Identities = 92/207 (44%), Positives = 142/207 (68%)
 Frame = +2

Query: 2   GPDGYTAHFFKATWDLTGKDVTRAILSFFKSGSMLREANATAITLVPKSDSPNSMSDFRP 181
           GPDGY+  FF+ TW + G +V  AI  FF SG +L++ NAT + L+PK+ +  ++S+FRP
Sbjct: 326 GPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRP 385

Query: 182 IACCNTVYKCISKIIANRLKCFMPDFIDQAQTAFVKDRSIMDNILLAQEILRDYHRDNKP 361
           I+C NT+YK ISK++ +RL+  +   I  +Q+AF+  RS+ +N+LLA E++  Y+R N  
Sbjct: 386 ISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNIS 445

Query: 362 PRCAIKLDWMKAYDTINWNFLFNILEAIGVPGMLLQCIKQCVSTSMFSISINGGLEDYFA 541
           PR  +K+D  KA+D++ W F+   L A+ +P   +  I QC++T  F+IS+NG    +F 
Sbjct: 446 PRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTPSFTISVNGATGGFFR 505

Query: 542 AERGLRQGDPISPYLFIFGMEVLSRML 622
           + +GLRQGDP+SPYLF+  MEV S++L
Sbjct: 506 STKGLRQGDPLSPYLFVLAMEVFSKLL 532