BLASTX nr result
ID: Paeonia22_contig00000101
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Paeonia22_contig00000101
(5847 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AEN25475.1| polyprotein 1, partial [Cycas necrotic stunt virus] 3521 0.0
ref|NP_620619.1| polyprotien 1 [Cycas necrotic stunt virus] gi|5... 3502 0.0
ref|NP_958814.1| polyprotein [Tomato black ring virus] gi|513164... 1549 0.0
ref|NP_620112.1| polyprotein [Beet ringspot virus] gi|538251|dbj... 1538 0.0
ref|NP_619705.1| polyprotein [Grapevine chrome mosaic virus] gi|... 1528 0.0
prf||1507292A polyprotein 1506 0.0
sp|P18522.1|POL1_BRSV RecName: Full=RNA1 polyprotein; AltName: F... 1505 0.0
ref|YP_006576510.1| polyprotein p1 [Grapevine Anatolian ringspot... 1475 0.0
ref|NP_734017.2| RNA-dependent RNA polymerase [Cycas necrotic st... 1377 0.0
ref|NP_734014.2| NTP-binding domain [Cycas necrotic stunt virus] 1224 0.0
dbj|BAJ16223.1| polyprotein [Melon mild mottle virus] 776 0.0
ref|NP_734035.1| RNA-dependent RNA polymerase [Beet ringspot virus] 765 0.0
ref|NP_958841.1| Pol [Tomato black ring virus] 764 0.0
gb|ADJ39329.1| polyprotein P1-I [Arabis mosaic virus] 755 0.0
gb|AGD98722.1| polyprotein P1 [Arabis mosaic virus] 754 0.0
gb|ACF32434.1| polyprotein 1 [Arabis mosaic virus] 751 0.0
gb|AGT56093.1| polyprotein 1 [Arabis mosaic virus] 750 0.0
gb|ADJ39331.1| polyprotein P1-III [Arabis mosaic virus] 748 0.0
gb|ADJ39330.1| polyprotein P1-II [Arabis mosaic virus] 748 0.0
ref|YP_053925.1| polyprotein 1 [Arabis mosaic virus] gi|50400891... 745 0.0
>gb|AEN25475.1| polyprotein 1, partial [Cycas necrotic stunt virus]
Length = 1984
Score = 3521 bits (9129), Expect = 0.0
Identities = 1728/1900 (90%), Positives = 1792/1900 (94%)
Frame = +3
Query: 147 VPIAGKRPDLVSTIYAFITGEAQIWLSAPRVCRLARRIIELSDWYPHELLAEELEKISDE 326
VPIAGKRPDLVSTIYAFITGEAQIWLSAPRVC LARRIIELSDWYPHELLAEEL+KISDE
Sbjct: 1 VPIAGKRPDLVSTIYAFITGEAQIWLSAPRVCLLARRIIELSDWYPHELLAEELKKISDE 60
Query: 327 ENCKDAEREINLKYLEISQATENMRAGGLFDKIKGKAQDLWTSVVDFASHPFRRYLATTA 506
ENCK+AEREINLKYLEIS+ATENMRA GLF K+KGKAQDLW+ +VDFASHPFR+YLAT A
Sbjct: 61 ENCKEAEREINLKYLEISKATENMRANGLFGKLKGKAQDLWSGIVDFASHPFRKYLATAA 120
Query: 507 EFVEGFSHRVVDAVMSRVNAAIAQFAAQLDIARTIVDQLVVHVKRWYTSLCTSFDDSLKL 686
+F EGFSH+VVDAVMSRVNAAI QFAAQLDIART+VDQL+ HVKRWYTSLCTSFDDSLKL
Sbjct: 121 DFAEGFSHKVVDAVMSRVNAAITQFAAQLDIARTLVDQLITHVKRWYTSLCTSFDDSLKL 180
Query: 687 LGKWAGYALGLIVGVGVCHLVEVICAHMGLPLGGVITGVFTTAYMGWLFVKTPVGSELVM 866
LGKWAGYALGLIVGVGVCHLVEVICAHMG PLGGVITGVFTTAYMGWLFVKTPVGSELVM
Sbjct: 181 LGKWAGYALGLIVGVGVCHLVEVICAHMGFPLGGVITGVFTTAYMGWLFVKTPVGSELVM 240
Query: 867 GLRLQVARIARNFFDCQRVGVPPDLPPNPNVGYSVPYEAFGGIGGQPFTMGPDAPNARAI 1046
LR+QVARIARNFFDCQR G+PPDLPPNPNVG+ VPYEAFGG+ QPF+MG D PNARAI
Sbjct: 241 SLRMQVARIARNFFDCQRTGIPPDLPPNPNVGFFVPYEAFGGVDNQPFSMGADVPNARAI 300
Query: 1047 PVVSPIINAMAGFGASMLSMKAMGLIEMGKLGAACHSLRMGKDALCEFVSTVLYYFGRLA 1226
PVVSPIINAMAGFGASMLSMKAMGLIEMGKLGAACHSLRMGKDALCEFVSTVLYYFGRLA
Sbjct: 301 PVVSPIINAMAGFGASMLSMKAMGLIEMGKLGAACHSLRMGKDALCEFVSTVLYYFGRLA 360
Query: 1227 DKVTGRETEFFDELSILVQIDVQDWIKRSRGVLLESCYTSLNNMILSDVVNKLVMDGERL 1406
DKVTGRETEFFDELSILVQIDVQDWIKRSRGVLLESCYTSLNNMILSDVVNKLV DGE+
Sbjct: 361 DKVTGRETEFFDELSILVQIDVQDWIKRSRGVLLESCYTSLNNMILSDVVNKLVTDGEQF 420
Query: 1407 QVTIAGTPRRLSLDFGQLVSSIMKDLLDLQQRIVRHGVTVGRRKEPTWIYIFGPSHCGKS 1586
IAGTPRRLSLDFGQLVSSIMKDLLDLQQRIVRHGVTVGRRKEPTWIYIFGPSHCGKS
Sbjct: 421 ASYIAGTPRRLSLDFGQLVSSIMKDLLDLQQRIVRHGVTVGRRKEPTWIYIFGPSHCGKS 480
Query: 1587 NMMDHLTSEVCRYFDLPYTFIARNGQDNFFTTGYKRQSVLQIDDLSCVETTPPIEGELIN 1766
NMMDHLTSEVCRYFDLPYT+IARNGQDNFFTTGYKRQ+VLQIDDLSCVET PPIEGELIN
Sbjct: 481 NMMDHLTSEVCRYFDLPYTYIARNGQDNFFTTGYKRQTVLQIDDLSCVETVPPIEGELIN 540
Query: 1767 LVACSEYPLKMADLSDKSISFQSPFVISTSNQRTCLPTCGITHCEAYNNRRAVVVEMRRK 1946
LV+CSEYPLKMADLSDKSISFQSPF+ISTSNQRTCLPTCGITHCEA+NNRRAVV+EMRRK
Sbjct: 541 LVSCSEYPLKMADLSDKSISFQSPFIISTSNQRTCLPTCGITHCEAFNNRRAVVIEMRRK 600
Query: 1947 PGVIFDPMDCHAAMQGRFLDKRDHTPLFGVQGQPETYWKDVPEMTTILLNICAAHRQEQD 2126
PGV+FDPMDCHAAMQGRFLDKRDHTPLFGV+GQPETYWKDVPEMTTILLNICAAHRQEQD
Sbjct: 601 PGVVFDPMDCHAAMQGRFLDKRDHTPLFGVRGQPETYWKDVPEMTTILLNICAAHRQEQD 660
Query: 2127 ILQEQHIRKHAVNDPLILASERFLKQESRKALCYMPRVEMEMHGVQSQAAGCYYLCVDQK 2306
ILQEQHIRKHAVNDPLILASERFLKQES+KALCYMPRVEME+ GVQSQAAGCYYLCVD K
Sbjct: 661 ILQEQHIRKHAVNDPLILASERFLKQESKKALCYMPRVEMEICGVQSQAAGCYYLCVDGK 720
Query: 2307 LYTCTDDGNLVETHCEKPDYERWEKNSSENFVGGVQALDALECRSILVSGFLRNLVQGQC 2486
LYTC DDGNLVET C P Y +WE+NSSENFVGG+QALDALECRSILVSGFLRNLVQGQC
Sbjct: 721 LYTCEDDGNLVETPCSNPSYAQWERNSSENFVGGIQALDALECRSILVSGFLRNLVQGQC 780
Query: 2487 CVLSVDEMSTTATMAQQRLFKALQLQERVYLRLIQKKISPILSEAESNVYSKNAWMRCLE 2666
CVLS+DEMSTTATMAQQRLFKALQLQERVYLRLIQKKISPILSE ESNVYSKNAWMRCLE
Sbjct: 781 CVLSIDEMSTTATMAQQRLFKALQLQERVYLRLIQKKISPILSEDESNVYSKNAWMRCLE 840
Query: 2667 FAAASRDYLKEHGXXXXXXXXXXXXXXXXXYYFIGAFIGVXXXXXXXXXXXXXXKEVDMK 2846
FAAASRDYLKEHG YYFIGAFIGV KEVDMK
Sbjct: 841 FAAASRDYLKEHGLEVLLLLAAIMILCVALYYFIGAFIGVMGGALSMGAAMAGLKEVDMK 900
Query: 2847 AQYSSGAQDGRYRSRNIPIRQRYRYARGELDEEVPLGGQLAVALYGSQGRFISAMQYKGK 3026
AQYSSGAQ+GRYRSRNIPIRQRYRYARGELDEEVPLGGQLAVALYGSQGRFISA+QYKGK
Sbjct: 901 AQYSSGAQEGRYRSRNIPIRQRYRYARGELDEEVPLGGQLAVALYGSQGRFISALQYKGK 960
Query: 3027 SVMLTRHQMLMFAEKERVTCIYLATGESVVLTFNRDDVQEFPNHETCLWQAAGMLQLPAK 3206
SVMLTRHQMLMF+EKERVTCIYLATGESVVLTFNRDDVQEFPNHETC+WQAAGMLQLPAK
Sbjct: 961 SVMLTRHQMLMFSEKERVTCIYLATGESVVLTFNRDDVQEFPNHETCMWQAAGMLQLPAK 1020
Query: 3207 FKDCFLEKGETELAPAFELEGYVLRPDSTAFHYDHLKTWARVQYEPFVVRGNLAREKYVN 3386
FKDCFLEKGETELAPAFELEGYVLRPD+TAFHYDHLKTWARVQYEPFVVRG+LA+EKYVN
Sbjct: 1021 FKDCFLEKGETELAPAFELEGYVLRPDTTAFHYDHLKTWARVQYEPFVVRGSLAKEKYVN 1080
Query: 3387 ELPTSIWFQYQSRNNDCGMICLAQVGGKKKIVGLLVAGVDQQTWADILPNPCMAEMKSQI 3566
ELPTSIWFQYQSRNNDCGMICLAQVGGKKKIVGLLVAGVD QTWADILPNPCMAEMKSQI
Sbjct: 1081 ELPTSIWFQYQSRNNDCGMICLAQVGGKKKIVGLLVAGVDLQTWADILPNPCMAEMKSQI 1140
Query: 3567 EYEFKLGVHTEGYTKLGYLTKDKAPHLPKKNSAVLVRPEYRIDSPVPIKEPSVISVEDPR 3746
EYEFKLG HTEGYTKLGYLTKDK PHLPKKNSAVLV+PEYRIDSPVPIKEPSVISVEDPR
Sbjct: 1141 EYEFKLGTHTEGYTKLGYLTKDKTPHLPKKNSAVLVKPEYRIDSPVPIKEPSVISVEDPR 1200
Query: 3747 CPKDSEGKPVDPIMKAFEKKFTTPMDLLEDDILESIAQEMIEEWHDCESEPLRDVPLEVA 3926
CP++ EG P+DPIMKAFEKKFTTPMDLLEDDILESIAQEM+EEW DCESEPL DVPLEVA
Sbjct: 1201 CPRNVEGLPIDPIMKAFEKKFTTPMDLLEDDILESIAQEMVEEWQDCESEPLHDVPLEVA 1260
Query: 3927 INGIPGTQIDDDDEFEDAVECFKMSTSPGYPYVLHKEVGMKGKEAYFELAPDGTKSLKEG 4106
ING+PGTQI DDDEFEDAVECFKM TSPGYPYVLHKE GMKGKEAYFELAPDGTK LKEG
Sbjct: 1261 INGVPGTQIGDDDEFEDAVECFKMRTSPGYPYVLHKESGMKGKEAYFELAPDGTKVLKEG 1320
Query: 4107 TLAAELYENIVQYSKSAIPELVVIECPKDELLKTEKIKQGACRLFEIMPLHYNLFLREKT 4286
+LAAELYENIVQYSKSAIPELVVIECPKDELLK EK+KQGACRLFEIMPLHYNLFLREKT
Sbjct: 1321 SLAAELYENIVQYSKSAIPELVVIECPKDELLKIEKVKQGACRLFEIMPLHYNLFLREKT 1380
Query: 4287 LAFSLFQQRNRHKLACQVGTKAYSHDWTHMYQRLVAKSDRAINCDYSGFDGLLNSQVVRC 4466
LAFSLFQQRNRHKLACQVGTKAYSHDWTHMYQRLVAKSDRAINCDYSGFDGLLNSQVV C
Sbjct: 1381 LAFSLFQQRNRHKLACQVGTKAYSHDWTHMYQRLVAKSDRAINCDYSGFDGLLNSQVVSC 1440
Query: 4467 IANMINSMYHSPEETIVSKRQRYNMINALFGRLAILVTGTDRDVMRVRAGLPSGFALTVV 4646
IANMINSMYHSPEET+VSKRQRYNMINALFGRLAI T ++VMRVRAGLPSGFALTVV
Sbjct: 1441 IANMINSMYHSPEETVVSKRQRYNMINALFGRLAI----TGQEVMRVRAGLPSGFALTVV 1496
Query: 4647 INSIFNEILMRYCFKVLVPGPQRNSFSTYVTLLVYGDDNLMSCTDKVATYFNGESIKATL 4826
INSIFNEILMRYCFKVLVPGPQRNSFSTYVTLLVYGDDNLMSCTDK+ATYFNGE+IKATL
Sbjct: 1497 INSIFNEILMRYCFKVLVPGPQRNSFSTYVTLLVYGDDNLMSCTDKIATYFNGETIKATL 1556
Query: 4827 KKKNVTITDGSDKTSPTIEWKAPGELDXXXXXXXXXXTGVVQAPLDLSAIFSCLHWVTPH 5006
KKKNVTITDGSDKT+P I+WKAPGELD TGVVQAPLDL+AIFSCLHWVTPH
Sbjct: 1557 KKKNVTITDGSDKTAPDIKWKAPGELDFLKRRFLKLETGVVQAPLDLTAIFSCLHWVTPH 1616
Query: 5007 PQKMPKGGAQLQVDSVDTLYELALNVQVALTELYLHDDKEEFQRVRNFYVKKMNILPTGY 5186
PQKMPKGGAQLQV++VDTLYELALNVQVALTELYLH +KEEFQRVRNFYVKKMNILP GY
Sbjct: 1617 PQKMPKGGAQLQVENVDTLYELALNVQVALTELYLHGNKEEFQRVRNFYVKKMNILPAGY 1676
Query: 5187 YTWADREAFHMSKQTGMEAYQPAKEIDIDVGQEFARFMHTSDIGNQVHFYTPVLGVAGPF 5366
YTWADREAFHMSKQTGMEAYQPAKEID+DVGQEFARFMHTSDIGNQVHF VAGPF
Sbjct: 1677 YTWADREAFHMSKQTGMEAYQPAKEIDLDVGQEFARFMHTSDIGNQVHFTRQCSVVAGPF 1736
Query: 5367 YKPTPDQLLVSTTPLKQGESGYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWE 5546
YKPTPDQLLVSTTPLKQGE+GYWVPVETGMG+GSLPTISWVHRF RPTQLVDAYGYKIWE
Sbjct: 1737 YKPTPDQLLVSTTPLKQGENGYWVPVETGMGIGSLPTISWVHRFMRPTQLVDAYGYKIWE 1796
Query: 5547 TLRSHIESGKSLVFRSEAPYVAGNAALMAFGQSAGLLEIQTALNLYRNVIPESTNGLEQY 5726
TLRSHIESGK LVFRSEAPYVA NAALMAFGQ+A LLEI+TALNLYRNVIPEST GLEQY
Sbjct: 1797 TLRSHIESGKCLVFRSEAPYVASNAALMAFGQAAKLLEIKTALNLYRNVIPESTYGLEQY 1856
Query: 5727 FDAAIPQASLPGQFYFANAETEFLLQEHKTGTIIGLMTDK 5846
FDAAIPQASLPG FY ANAE+E LLQEHKTGT+IGL TDK
Sbjct: 1857 FDAAIPQASLPGTFYLANAESESLLQEHKTGTVIGLTTDK 1896
>ref|NP_620619.1| polyprotien 1 [Cycas necrotic stunt virus]
gi|50400776|sp|Q8QVV0.1|POL1_CNSV RecName: Full=RNA1
polyprotein; AltName: Full=P1; Contains: RecName:
Full=P1A protein; Short=1A; AltName: Full=Protease
cofactor; Contains: RecName: Full=Putative ATP-dependent
helicase; AltName: Full=1B; AltName:
Full=Membrane-binding protein; AltName: Full=NTP-binding
protein; Short=NTB; Contains: RecName: Full=Viral
genome-linked protein; AltName: Full=1C-VPg; Contains:
RecName: Full=Picornain 3C-like protease; Short=3C-like
protease; AltName: Full=1D-PRO; Contains: RecName:
Full=RNA-directed RNA polymerase; AltName: Full=1E-POL
gi|20160382|dbj|BAB89369.1| polyprotien 1 [Cycas necrotic
stunt virus]
Length = 2336
Score = 3502 bits (9081), Expect = 0.0
Identities = 1726/1935 (89%), Positives = 1802/1935 (93%)
Frame = +3
Query: 42 EVVHSVPQNPLWGLYPCVGLGANMADPVCRVLSACVPIAGKRPDLVSTIYAFITGEAQIW 221
E+ VPQ LWGLYPCVGLGANMADPVCRVLSACV IAGKRPDLVSTIYAFITGEAQ+W
Sbjct: 320 EIGDFVPQKTLWGLYPCVGLGANMADPVCRVLSACVSIAGKRPDLVSTIYAFITGEAQVW 379
Query: 222 LSAPRVCRLARRIIELSDWYPHELLAEELEKISDEENCKDAEREINLKYLEISQATENMR 401
LSAPRVC LA+RIIELSDWYPHELLAEEL+KISDEENCK+AEREINLKYLEIS+ATENMR
Sbjct: 380 LSAPRVCMLAKRIIELSDWYPHELLAEELKKISDEENCKEAEREINLKYLEISKATENMR 439
Query: 402 AGGLFDKIKGKAQDLWTSVVDFASHPFRRYLATTAEFVEGFSHRVVDAVMSRVNAAIAQF 581
A GLF+K+KGKAQDLW+ +VDFASHPFR+YLAT AEFVEGFSHRVVDAVMSRVNAAIAQF
Sbjct: 440 ANGLFNKLKGKAQDLWSGIVDFASHPFRKYLATAAEFVEGFSHRVVDAVMSRVNAAIAQF 499
Query: 582 AAQLDIARTIVDQLVVHVKRWYTSLCTSFDDSLKLLGKWAGYALGLIVGVGVCHLVEVIC 761
AAQLDIA+T+VDQLV+HVKRWYTSLCTSFDDSLKLLGKWAGYALGLIVGVGVCHLVEVIC
Sbjct: 500 AAQLDIAKTLVDQLVIHVKRWYTSLCTSFDDSLKLLGKWAGYALGLIVGVGVCHLVEVIC 559
Query: 762 AHMGLPLGGVITGVFTTAYMGWLFVKTPVGSELVMGLRLQVARIARNFFDCQRVGVPPDL 941
AHMGLPLGGVITGVFTTAYMGWLFVKTPVGSELVM LR+QVARIARN FD QR G+PPDL
Sbjct: 560 AHMGLPLGGVITGVFTTAYMGWLFVKTPVGSELVMNLRMQVARIARNIFDVQRTGIPPDL 619
Query: 942 PPNPNVGYSVPYEAFGGIGGQPFTMGPDAPNARAIPVVSPIINAMAGFGASMLSMKAMGL 1121
P NPNVG+SVPYEAFGGI QPF+MG D PNARAIPVVSPIINAMAGFGASMLSMKAMGL
Sbjct: 620 PANPNVGFSVPYEAFGGIDNQPFSMGADVPNARAIPVVSPIINAMAGFGASMLSMKAMGL 679
Query: 1122 IEMGKLGAACHSLRMGKDALCEFVSTVLYYFGRLADKVTGRETEFFDELSILVQIDVQDW 1301
IEMGKLGAACHSLRMGKDALCEFVSTVLYYFGRLADKVTGRETEFFDELSILVQIDV+DW
Sbjct: 680 IEMGKLGAACHSLRMGKDALCEFVSTVLYYFGRLADKVTGRETEFFDELSILVQIDVKDW 739
Query: 1302 IKRSRGVLLESCYTSLNNMILSDVVNKLVMDGERLQVTIAGTPRRLSLDFGQLVSSIMKD 1481
I RSRGVLL+SCYTSLNNMI SDVVNKLV DGE++ IAGTPRRLSLDFGQLVSSIMKD
Sbjct: 740 ITRSRGVLLDSCYTSLNNMICSDVVNKLVTDGEQIASNIAGTPRRLSLDFGQLVSSIMKD 799
Query: 1482 LLDLQQRIVRHGVTVGRRKEPTWIYIFGPSHCGKSNMMDHLTSEVCRYFDLPYTFIARNG 1661
LLDLQQRIVRHGVTVGRRKEPTWIYIFGPSHCGKSNMMDHLTSEVCRYFDLPYT+IARNG
Sbjct: 800 LLDLQQRIVRHGVTVGRRKEPTWIYIFGPSHCGKSNMMDHLTSEVCRYFDLPYTYIARNG 859
Query: 1662 QDNFFTTGYKRQSVLQIDDLSCVETTPPIEGELINLVACSEYPLKMADLSDKSISFQSPF 1841
QDNFFTTGYKRQ+VLQIDDLSCVE PPIE ELINLV+CSEYPLKMADLSDKSISFQSPF
Sbjct: 860 QDNFFTTGYKRQTVLQIDDLSCVENVPPIERELINLVSCSEYPLKMADLSDKSISFQSPF 919
Query: 1842 VISTSNQRTCLPTCGITHCEAYNNRRAVVVEMRRKPGVIFDPMDCHAAMQGRFLDKRDHT 2021
+ISTSNQRTCLPTCGITHCEA+NNRRAVVVEMRRKPGV+FDPMDCHAAMQGRFLDKRDHT
Sbjct: 920 IISTSNQRTCLPTCGITHCEAFNNRRAVVVEMRRKPGVVFDPMDCHAAMQGRFLDKRDHT 979
Query: 2022 PLFGVQGQPETYWKDVPEMTTILLNICAAHRQEQDILQEQHIRKHAVNDPLILASERFLK 2201
PLFGVQGQPET+WKDVPEMTTILLNIC AHRQEQDILQEQHIRKHAVNDPLILASERFLK
Sbjct: 980 PLFGVQGQPETFWKDVPEMTTILLNICVAHRQEQDILQEQHIRKHAVNDPLILASERFLK 1039
Query: 2202 QESRKALCYMPRVEMEMHGVQSQAAGCYYLCVDQKLYTCTDDGNLVETHCEKPDYERWEK 2381
QESRKALCYMPRVEME+ GVQSQAAGCYYLCVDQKLYTC DDGNLVET C P Y +WE+
Sbjct: 1040 QESRKALCYMPRVEMEICGVQSQAAGCYYLCVDQKLYTCEDDGNLVETPCLNPSYAQWER 1099
Query: 2382 NSSENFVGGVQALDALECRSILVSGFLRNLVQGQCCVLSVDEMSTTATMAQQRLFKALQL 2561
NSSENFVGGVQALDALECRSILVSG LRNLVQGQCCVLS+DEMS + QRLFKALQL
Sbjct: 1100 NSSENFVGGVQALDALECRSILVSGILRNLVQGQCCVLSIDEMS-RLPLCTQRLFKALQL 1158
Query: 2562 QERVYLRLIQKKISPILSEAESNVYSKNAWMRCLEFAAASRDYLKEHGXXXXXXXXXXXX 2741
QERVYLRLIQKKIS ILS ESNVYSKNAWMRCLEFAAASRDYLKEHG
Sbjct: 1159 QERVYLRLIQKKISHILSVDESNVYSKNAWMRCLEFAAASRDYLKEHGLEVLLLLAAMMI 1218
Query: 2742 XXXXXYYFIGAFIGVXXXXXXXXXXXXXXKEVDMKAQYSSGAQDGRYRSRNIPIRQRYRY 2921
YYF+GAFIGV KEVDMKAQYSSGAQ+GRYRSRNIPIRQRYRY
Sbjct: 1219 LCVALYYFVGAFIGVMGGALSMGAAMAGLKEVDMKAQYSSGAQEGRYRSRNIPIRQRYRY 1278
Query: 2922 ARGELDEEVPLGGQLAVALYGSQGRFISAMQYKGKSVMLTRHQMLMFAEKERVTCIYLAT 3101
ARGELDEEVPLGGQLAVALYGSQGRFISA+QYKGKSVMLTRHQMLMFAEKERVTCIYLAT
Sbjct: 1279 ARGELDEEVPLGGQLAVALYGSQGRFISALQYKGKSVMLTRHQMLMFAEKERVTCIYLAT 1338
Query: 3102 GESVVLTFNRDDVQEFPNHETCLWQAAGMLQLPAKFKDCFLEKGETELAPAFELEGYVLR 3281
GESVVLTFNRDDVQEFPNHETC+WQAAGMLQLPAKFKDCFLEKGETELAPAFELEGYVLR
Sbjct: 1339 GESVVLTFNRDDVQEFPNHETCMWQAAGMLQLPAKFKDCFLEKGETELAPAFELEGYVLR 1398
Query: 3282 PDSTAFHYDHLKTWARVQYEPFVVRGNLAREKYVNELPTSIWFQYQSRNNDCGMICLAQV 3461
PDSTAF LKTWARVQYEPFVVRG+LA+EKYVNELPTSIWFQYQSRNNDCGM+CLAQV
Sbjct: 1399 PDSTAFIMTILKTWARVQYEPFVVRGSLAKEKYVNELPTSIWFQYQSRNNDCGMVCLAQV 1458
Query: 3462 GGKKKIVGLLVAGVDQQTWADILPNPCMAEMKSQIEYEFKLGVHTEGYTKLGYLTKDKAP 3641
GGKKKIVGLLVAGVDQQTWAD LPNPCMAEMKSQIEYEFKLG HTEGYTKLGYLTKDK P
Sbjct: 1459 GGKKKIVGLLVAGVDQQTWADNLPNPCMAEMKSQIEYEFKLGAHTEGYTKLGYLTKDKTP 1518
Query: 3642 HLPKKNSAVLVRPEYRIDSPVPIKEPSVISVEDPRCPKDSEGKPVDPIMKAFEKKFTTPM 3821
HLPKKN+AVLV+PEYRIDSPVPIKEPS+IS EDPRCPKD+EGKP+DPI+KAFEKKFTTPM
Sbjct: 1519 HLPKKNNAVLVKPEYRIDSPVPIKEPSIISAEDPRCPKDAEGKPIDPIVKAFEKKFTTPM 1578
Query: 3822 DLLEDDILESIAQEMIEEWHDCESEPLRDVPLEVAINGIPGTQIDDDDEFEDAVECFKMS 4001
DLLEDDILESIAQEM++EW DCESEPL DVPLEVAINGIPGTQIDDDDEFEDAVEC KM
Sbjct: 1579 DLLEDDILESIAQEMVDEWQDCESEPLCDVPLEVAINGIPGTQIDDDDEFEDAVECLKMR 1638
Query: 4002 TSPGYPYVLHKEVGMKGKEAYFELAPDGTKSLKEGTLAAELYENIVQYSKSAIPELVVIE 4181
TSPGYPYVLHKE GMKGKEAYFELAPDGT++LKEG+LAAELYENIVQYSKSAIPELVVIE
Sbjct: 1639 TSPGYPYVLHKEPGMKGKEAYFELAPDGTRALKEGSLAAELYENIVQYSKSAIPELVVIE 1698
Query: 4182 CPKDELLKTEKIKQGACRLFEIMPLHYNLFLREKTLAFSLFQQRNRHKLACQVGTKAYSH 4361
CPKDELLKTEK+ + ACR FEIMPLHYNLFLREKTLAFSLFQQRNRHKLACQVGTKAYSH
Sbjct: 1699 CPKDELLKTEKVNK-ACRPFEIMPLHYNLFLREKTLAFSLFQQRNRHKLACQVGTKAYSH 1757
Query: 4362 DWTHMYQRLVAKSDRAINCDYSGFDGLLNSQVVRCIANMINSMYHSPEETIVSKRQRYNM 4541
DWTHMYQRLVAKSDRAINCDYS FDGLLNSQVV CIANMINSMYHSPEET+VSKRQRYNM
Sbjct: 1758 DWTHMYQRLVAKSDRAINCDYSSFDGLLNSQVVSCIANMINSMYHSPEETVVSKRQRYNM 1817
Query: 4542 INALFGRLAILVTGTDRDVMRVRAGLPSGFALTVVINSIFNEILMRYCFKVLVPGPQRNS 4721
INALFGRLAI T ++VMRVRAGLPSGFALTVVINS+FNEILMRYCFKVLV GPQRNS
Sbjct: 1818 INALFGRLAI----TGQEVMRVRAGLPSGFALTVVINSVFNEILMRYCFKVLVLGPQRNS 1873
Query: 4722 FSTYVTLLVYGDDNLMSCTDKVATYFNGESIKATLKKKNVTITDGSDKTSPTIEWKAPGE 4901
FSTYVTLLVYGDDNLMSCTDK+A YFNGE+IK TLKKKNVTITDGSDKT+P I+WK GE
Sbjct: 1874 FSTYVTLLVYGDDNLMSCTDKIAIYFNGETIKETLKKKNVTITDGSDKTAPDIKWKTLGE 1933
Query: 4902 LDXXXXXXXXXXTGVVQAPLDLSAIFSCLHWVTPHPQKMPKGGAQLQVDSVDTLYELALN 5081
LD TGVVQAPLDL+AIFSCLHWVTPHPQKMPKGGAQLQV++VDTLYELALN
Sbjct: 1934 LDFLKRRFLKLETGVVQAPLDLTAIFSCLHWVTPHPQKMPKGGAQLQVENVDTLYELALN 1993
Query: 5082 VQVALTELYLHDDKEEFQRVRNFYVKKMNILPTGYYTWADREAFHMSKQTGMEAYQPAKE 5261
VQVALTELYLH +KEEFQRVRNFY KKMNILP GYYTWADREAFHMSKQTGMEAYQPAKE
Sbjct: 1994 VQVALTELYLHGNKEEFQRVRNFYTKKMNILPAGYYTWADREAFHMSKQTGMEAYQPAKE 2053
Query: 5262 IDIDVGQEFARFMHTSDIGNQVHFYTPVLGVAGPFYKPTPDQLLVSTTPLKQGESGYWVP 5441
ID+DVGQEFARFMHTSDIGNQVHF L VAGPFYKPTPDQLLVSTTPLKQGESGYWVP
Sbjct: 2054 IDLDVGQEFARFMHTSDIGNQVHFTRQCLVVAGPFYKPTPDQLLVSTTPLKQGESGYWVP 2113
Query: 5442 VETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKSLVFRSEAPYVAGNA 5621
VETGMG+G+LPTI+WVHRF RPTQLVDAYGYKIW +RSHIESGKSLVFRSEAPYVAGNA
Sbjct: 2114 VETGMGIGNLPTIAWVHRFMRPTQLVDAYGYKIWGNVRSHIESGKSLVFRSEAPYVAGNA 2173
Query: 5622 ALMAFGQSAGLLEIQTALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAETEFLL 5801
ALMAFGQ+A LLEI+TALNLYRNVIPEST GLEQYFDAAIPQASLPG FY ANAE+E LL
Sbjct: 2174 ALMAFGQAAKLLEIKTALNLYRNVIPESTYGLEQYFDAAIPQASLPGTFYLANAESESLL 2233
Query: 5802 QEHKTGTIIGLMTDK 5846
QEHKTGT+IGL T+K
Sbjct: 2234 QEHKTGTVIGLTTEK 2248
>ref|NP_958814.1| polyprotein [Tomato black ring virus]
gi|51316452|sp|Q8B8X3.1|POL1_TBRVM RecName: Full=RNA1
polyprotein; AltName: Full=P1; Contains: RecName:
Full=P1A protein; Short=1A; AltName: Full=protease
cofactor; Contains: RecName: Full=Putative ATP-dependent
helicase; AltName: Full=1B; AltName: Full=NTP-binding
protein; Short=NTB; AltName: Full=membrane-binding
protein; Contains: RecName: Full=Viral genome-linked
protein; AltName: Full=1C-VPg; Contains: RecName:
Full=Picornain 3C-like protease; Short=3C-like protease;
AltName: Full=1D-PRO; Contains: RecName:
Full=RNA-directed RNA polymerase; AltName: Full=1E-POL
gi|25247332|gb|AAN72830.1| polyprotein [Tomato black ring
virus]
Length = 2266
Score = 1549 bits (4010), Expect = 0.0
Identities = 858/1935 (44%), Positives = 1175/1935 (60%), Gaps = 7/1935 (0%)
Frame = +3
Query: 45 VVHSVPQNPLWGLYPCVGLGANMADPVCRVLSACVPIAGKRPDLVSTIYAFITGEAQIWL 224
VVH V NPL L P +GLGA AD C+ I + P L + IYA++ G A +
Sbjct: 298 VVHQVVANPLGSLCPYMGLGAKTADVRCQATLMAGKIHAQYPRLATAIYAWVIGPAAHFE 357
Query: 225 SAPRVCRLARRIIELSDWYPHELLAEELEKISDEENCKDAEREINLKY--LEISQATENM 398
V + + + D++P E L EL +I+ E C A ++ + LE + N
Sbjct: 358 CITPVRNFVKGLTFMVDFFPEEALIHELNEITTEAVCIGASMVLDEERAKLEAHAQSANC 417
Query: 399 RAGGLFDKIKGKAQDLWTSVVDFASHPFRRYLATTAEFVEGFSHRVVDAVMSRVNAAIAQ 578
RA + G V + A + + E + + +M IAQ
Sbjct: 418 RANVFMKAMAG--------VKNMAKCAYTGFKTGCEEAGRSLAEGICSVMMRSFRECIAQ 469
Query: 579 FAAQLDIARTIVDQLVVHVKRWYTSLCTSFDDSLKLLGKWAGYALGLIVGVGVCHLVEVI 758
+L A +V+ ++ VK W+ S+ L+ LG +A YAL +++G G+ L+E
Sbjct: 470 IKTELGCAIEMVEVMIKKVKDWFYSMLEKLQCGLETLGSYAMYALAILLGCGLTSLLERC 529
Query: 759 CAHMGLPLGGVITGVFTTAYMGWLFVKTPVGSELVMGLRLQVAR-IARNFFDCQRVGVPP 935
G ++T +F T + + ++ G + + +Q+ +A FD Q G
Sbjct: 530 IGGQG-----ILTKLFITGVLAAIGLQAAGGFDNLQREMVQLCTALAAGIFDIQHAG--- 581
Query: 936 DLPPNPNVGYSVPYEAFGGIGGQPFTMGPDAPNARAIPVVSPIINAMAGFGASMLSMKAM 1115
+ Y+ I + N R+IP++S +I A+A FG + SM++
Sbjct: 582 ----------NGKYKPSWDITAEHAREDARDSNVRSIPIISGVIEALAQFGTGLCSMQSA 631
Query: 1116 GLIEMGKLGAACHSLRMGKDALCEFVSTVLYYFGRLADKVTGRETEFFDELSILVQIDVQ 1295
LIE+GK+GAACHS+RMGK+AL EF +T++YY GR+ADKVTGRET FFDELS LV +DV+
Sbjct: 632 TLIEIGKIGAACHSMRMGKEALKEFCATLMYYLGRIADKVTGRETIFFDELSTLVHVDVR 691
Query: 1296 DWIKRSRGVLLESCYTSLNNMILSDVVNKLVMDGERLQVTIAGTPRRLSLDFGQLVSSIM 1475
WIKR++ + ES +T + N D+V +LV +G++LQ+ + G PR++S D+ QL+ IM
Sbjct: 692 GWIKRAQSCMRESFHTEIGNQFFRDMVAQLVDEGQKLQIGVNGIPRKISADYSQLIGQIM 751
Query: 1476 KDLLDLQQRIVRHGVTVGRRKEPTWIYIFGPSHCGKSNMMDHLTSEVCRYFDLPYTFIAR 1655
KDL++L +R +R G++ GRR EP WIY+FG HCGKSN M L + + ++F+LP T R
Sbjct: 752 KDLVELHKRTIRAGISEGRRCEPVWIYLFGQRHCGKSNFMSTLDNALAKHFNLPNTTAYR 811
Query: 1656 NGQDNFFTTGYKRQSVLQIDDLSCVETTPPIEGELINLVACSEYPLKMADLSDKSISFQS 1835
N +D F++ GY Q+ +DDLS V+ PP+E ELINLV+C E PL MADL+DK I F+S
Sbjct: 812 NCKDAFYS-GYSGQTFFHMDDLSSVKLEPPLEAELINLVSCQEVPLNMADLADKPIYFRS 870
Query: 1836 PFVISTSNQRTCLPTCGITHCEAYNNRRAVVVEMRRKPGVIFDPMDCHAAMQGRFLDKRD 2015
PF+IS+SN CG+ EAY R+A +VEMRRKPGVI+DP + A Q RF D
Sbjct: 871 PFIISSSNFEDVPAGCGVRDIEAYRARKACLVEMRRKPGVIYDPENPLLASQARFKDPMY 930
Query: 2016 HTPLFGVQGQPETYWKDVPEMTTILLNICAAHRQEQDILQEQHIRKHAVNDPLILASERF 2195
T + G ET W ++ ++ T ++NI A HR Q+ LQ +++R+ A+ DPL LASE F
Sbjct: 931 QTLINGQT--EETSWMEMDDVVTEIINISARHRSAQEKLQARYMREKALLDPLALASESF 988
Query: 2196 LKQESRKALCYMPRVEMEMHGVQSQAAGCYYLCVDQKLYTCTDDGNLVETHCEKPDYER- 2372
L +E++K VE+E GV G + L VD LY E + Y+R
Sbjct: 989 LVKEAQKVFLDFDGVELEKAGVPRPEGG-HGLYVDGVLYLVNASFEFDEIPIKDGGYQRL 1047
Query: 2373 WEKNSSENFVGGVQALDALECRSILVSGFLRNLVQGQCCVLSVDEMSTTATMAQQRLFKA 2552
W+ + F+ +Q + L +S++V+GFLR+LV G+C VLS D ++ +AT AQ +FKA
Sbjct: 1048 WDSRMRKKFLPAIQRDEHLNTKSMVVTGFLRSLVNGECAVLSKDTLTASATTAQLSIFKA 1107
Query: 2553 LQLQERVYLRLIQKKISPILSEAESNVYSKNAWMRCLEFAAASRDYLKEHGXXXXXXXXX 2732
L+L+ERVYLR +Q ++ + N Y +AW++ L A RDYL ++G
Sbjct: 1108 LRLEERVYLRTLQHQLDLYSQDIPENPYCNSAWVKVLGAIGAGRDYLVQNGCGILMIAAA 1167
Query: 2733 XXXXXXXXYYFIGAFIGVXXXXXXXXXXXXXXKEVDMKAQYSSGAQDGRYRSRNIPIRQR 2912
+ F F+G+ VD+KAQ SS +Q+ YR+RNIPI R
Sbjct: 1168 LILILVSGWGFWKLFVGLFSGTMSLGAAITGMSAVDIKAQQSSASQEKGYRARNIPIHHR 1227
Query: 2913 YRYARGELDEEVPLGGQLAVALYGSQGRFISAMQYKGKSVMLTRHQMLMFAEKERVTCIY 3092
Y YAR + + + +L VA+Y G F+SAMQYK KSV +TRHQ L F E E++T I+
Sbjct: 1228 YAYARSQAGDGLLPAARLCVAIYQPGGGFVSAMQYKNKSVRMTRHQALRFKEGEQLTVIF 1287
Query: 3093 LATGESVVLTFNRDDVQEFPNHETCLWQAAGMLQLPAKFKDCFLEKGETELAPAFELEGY 3272
+TGES ++ +++ ++E E W A + L KD FLE E +L F+ GY
Sbjct: 1288 ASTGESQLIRWHKYHMREEHGSEIVTWLAPSLPALSPDLKDLFLEDKEVDLPNHFKTIGY 1347
Query: 3273 VLRPDSTAFHYDHLKTWARVQYEPFVVRGNLAREKYVNELPTSIWFQYQSRNNDCGMICL 3452
VLR DSTAFHYD L T+ V P ++G + E Y++E+P I F Y+SRN+DCGMI L
Sbjct: 1348 VLRVDSTAFHYDTLDTYGAVDKTPLPLKGVVGNELYLHEIPEKIVFHYESRNDDCGMIML 1407
Query: 3453 AQVGGKKKIVGLLVAGVDQQTWADILPNPCMAEMKSQIEYEFKLGVHTEGYTKLGYLTKD 3632
Q+ GK ++VG+LVAG D+ +WADI+P +AE+KSQI+Y + G +GY K GY+ K
Sbjct: 1408 CQIRGKMRVVGMLVAGKDKTSWADIMPPNSLAELKSQIDYIPEFGEACDGYFKAGYVHKS 1467
Query: 3633 KAPHLPKKNSAVLVRPEYRIDSPVPIKEPSVISVEDPRCPKDSEGKPVDPIMKAFEKKFT 3812
+AP LPKK + V V R+ VP+KEP+V++ +DPRCP VDP A +KKFT
Sbjct: 1468 EAPTLPKKTNMVPVPESLRVPCDVPVKEPAVLTKDDPRCPIG-----VDPPRAALKKKFT 1522
Query: 3813 TPMDLLEDDILESIAQEMIEEWHDCESEPLRDVPLEVAINGIPGTQIDDDDEFEDAVECF 3992
PM LE +IL+ +A +++E W+DCE L D+ L VAINGIP D E +E F
Sbjct: 1523 QPMMELEQEILDEVATDILETWYDCEDHVLSDISLSVAINGIPA------DSEEAELENF 1576
Query: 3993 KMSTSPGYPYVLHKEV-GMKGKEAYFELAPDGTKSLKEGTLAAELYENIVQYSKSAIPEL 4169
M TSPGYPY + +KGK AYFE A DG+ LK+G +AAEL+EN+V+++K+ +PEL
Sbjct: 1577 VMKTSPGYPYFKNNRAEKLKGKHAYFEEAEDGSLQLKKGGMAAELHENLVEFTKNEVPEL 1636
Query: 4170 VVIECPKDELLKTEKIKQGACRLFEIMPLHYNLFLREKTLAFSLFQQRNRHKLACQVGTK 4349
VVIEC KDELL KIK GACRLFEIMPLHYNLFLR+KT AF+ F Q NRH+L CQVGT
Sbjct: 1637 VVIECTKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQHNRHRLPCQVGTN 1696
Query: 4350 AYSHDWTHMYQRLV-AKSDRAINCDYSGFDGLLNSQVVRCIANMINSMYHSPEETIVSKR 4526
YS +W HM RL+ K++ AINCDYSGFDGLLN Q++ CIA MIN +Y E+ V +
Sbjct: 1697 PYSREWGHMLNRLMRPKTNEAINCDYSGFDGLLNPQLIECIARMINRLYALSGESDVQQA 1756
Query: 4527 QRYNMINALFGRLAILVTGTDRDVMRVRAGLPSGFALTVVINSIFNEILMRYCFKVLVPG 4706
QRYNM+ AL GR A + + V +V GLPSGFALTVV+NS+FNEIL+RY +K L P
Sbjct: 1757 QRYNMLMALVGRYAFV----GQQVYKVNCGLPSGFALTVVVNSVFNEILIRYAYKKLAPA 1812
Query: 4707 PQRNSFSTYVTLLVYGDDNLMSCTDKVATYFNGESIKATLKKKNVTITDGSDKTSPTIEW 4886
P+RN F + V LLVYGDDNL+S + +A++F GE+I+ TL +K V ITDGSDK +PTIE
Sbjct: 1813 PERNRFGSTVCLLVYGDDNLISVSPSIASWFTGEAIRITLAEKKVKITDGSDKDAPTIEA 1872
Query: 4887 KAPGELDXXXXXXXXXXTGVVQAPLDLSAIFSCLHWVTPHPQKMPKGGAQLQVD-SVDTL 5063
K+ ELD G+VQAPLD SAIFS L+W+TP K + VD +
Sbjct: 1873 KSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKFHESQKPSDFQGEVDVI 1932
Query: 5064 YELALNVQVALTELYLHDDKEEFQRVRNFYVKKMNILPTGYYTWADREAFHMSKQTGMEA 5243
EL LNV VAL ELYLH+D EFQRVR FY +++ ++ + TWA EAFH ++QTGM+
Sbjct: 1933 EELLLNVNVALMELYLHNDVAEFQRVRGFYAQRLPLMVSQLRTWAFCEAFHSAQQTGMQK 1992
Query: 5244 YQPAKEIDIDVGQEFARFMHTSDIGNQVHFYTPVLGVAGPFYKPTPDQLLVSTTPLKQGE 5423
Y PA +D G +F RFMH S+ GN+ HFYT +LGV+GP YKP +VS PLK G
Sbjct: 1993 YDPAVVLDHMSGVDFKRFMHMSEQGNKAHFYTEMLGVSGPHYKPQEGDFIVSNQPLKPGV 2052
Query: 5424 SGYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKSLVFRSEAP 5603
G +VP+ G G+G LPT WV F +P+QL ++ GY I LR IE+GK L+F AP
Sbjct: 2053 QGEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSKGYLITGLLREQIEAGKRLIFMGPAP 2112
Query: 5604 YVAGNAALMAFGQSAGLLEIQTALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANA 5783
YVA NAAL++FG + +L + AL YRNVIPEST+GLEQYFDA IPQAS+ G FYF +
Sbjct: 2113 YVANNAALISFGSAHKMLIQKDALAHYRNVIPESTSGLEQYFDAPIPQASV-GTFYFGDG 2171
Query: 5784 ETEFLLQEHKTGTII 5828
ET L E+K G ++
Sbjct: 2172 ETYTALCEYKDGKVL 2186
>ref|NP_620112.1| polyprotein [Beet ringspot virus] gi|538251|dbj|BAA00234.1|
polyprotein [Beet ringspot virus]
Length = 2266
Score = 1538 bits (3982), Expect = 0.0
Identities = 859/1934 (44%), Positives = 1168/1934 (60%), Gaps = 7/1934 (0%)
Frame = +3
Query: 48 VHSVPQ-NPLWGLYPCVGLGANMADPVCRVLSACVPIAGKRPDLVSTIYAFITGEAQIWL 224
V S P+ N L L P +GLGA AD C+ I + P L S IYA++ G + +
Sbjct: 298 VTSTPKPNVLENLCPFMGLGAKTADVRCQATLMAGKIHPQYPRLASAIYAWVLGPSMKFE 357
Query: 225 SAPRVCRLARRIIELSDWYPHELLAEELEKISDEENCKDAEREINLKYLEISQATENMRA 404
V + + + D++P E+L +EL KI+ E C +A + + ++ EN
Sbjct: 358 CIAPVKTFIKGLTFMVDYFPEEVLIDELNKINSEARCFEASLVLEEERAKLEAHAENANC 417
Query: 405 -GGLFDKIKGKAQDLWTSVVDFASHPFRRYLATTAEFVEGFSHRVVDAVMSRVNAAIAQF 581
+F K V + A + +L E S V +++ I
Sbjct: 418 RANIFMKAMA-------GVKNMAKCAYSGFLTGCEEAGRSLSEGVCSVMINSFRECIKMI 470
Query: 582 AAQLDIARTIVDQLVVHVKRWYTSLCTSFDDSLKLLGKWAGYALGLIVGVGVCHLVEVIC 761
+L A +++ ++ VK WY S+ L LG +A YAL +++G G+ L+E
Sbjct: 471 HKELGCAMELIEVMIKKVKDWYNSMLEKLHCGLATLGTYAMYALAILLGCGLTTLLERCI 530
Query: 762 AHMGLPLGGVITGVFTTAYMGWLFVKTPVGSELVMGLRLQVARIARNFFDCQRVGVPPDL 941
G+ +TGVF + + E+V +A FD G
Sbjct: 531 GGAGILTKLFVTGVFAAIGLHAAGGFDGLQREMVQ----MCTALAAGIFDVHHKG----- 581
Query: 942 PPNPNVGYSVPYEAFGGIGGQPFTMGPDAPNARAIPVVSPIINAMAGFGASMLSMKAMGL 1121
+ Y I + A N R+IP++S II+AM FG + SM ++ L
Sbjct: 582 --------NGKYSPMADILAEQRLEDRRADNVRSIPIISGIISAMQQFGTGLCSMHSISL 633
Query: 1122 IEMGKLGAACHSLRMGKDALCEFVSTVLYYFGRLADKVTGRETEFFDELSILVQIDVQDW 1301
IE+GKLGAACHS+RMGK+AL EF +T++YY GR++DKVTGRET FFDELS LV +DV+ W
Sbjct: 634 IEIGKLGAACHSMRMGKEALKEFCATIMYYLGRISDKVTGRETVFFDELSTLVSVDVRGW 693
Query: 1302 IKRSRGVLLESCYTSLNNMILSDVVNKLVMDGERLQVTIAGTPRRLSLDFGQLVSSIMKD 1481
I ++ + ES +T + N D+V +LV DG++LQV + G PR++S D+ QL+ IMKD
Sbjct: 694 ILCAQSCIRESFHTEIGNQFFRDMVAQLVDDGQKLQVGVNGIPRKISTDYSQLIGQIMKD 753
Query: 1482 LLDLQQRIVRHGVTVGRRKEPTWIYIFGPSHCGKSNMMDHLTSEVCRYFDLPYTFIARNG 1661
L++L +R +R G++ GRR EP WIY+FG HCGKSN M L + + ++F LP T RN
Sbjct: 754 LMELHKRTIRAGISEGRRCEPVWIYLFGQRHCGKSNFMATLDNALAKHFGLPNTTAYRNC 813
Query: 1662 QDNFFTTGYKRQSVLQIDDLSCVETTPPIEGELINLVACSEYPLKMADLSDKSISFQSPF 1841
+D+FF+ GY Q+ +DDLS V+ PP+E E+INLV+C E PL MADL+DK I F+SPF
Sbjct: 814 KDSFFS-GYSGQTFFHVDDLSSVKLDPPMEAEMINLVSCQEVPLNMADLADKPIYFRSPF 872
Query: 1842 VISTSNQRTCLPTCGITHCEAYNNRRAVVVEMRRKPGVIFDPMDCHAAMQGRFLDKRDHT 2021
+IS+SN CG+ EAY +R+A +VEMRRKPGV+FDP + A Q RF D
Sbjct: 873 IISSSNFEDVPAGCGVRDIEAYRSRKACLVEMRRKPGVLFDPDNPLLASQARFKDPMSQM 932
Query: 2022 PLFGVQGQPETYWKDVPEMTTILLNICAAHRQEQDILQEQHIRKHAVNDPLILASERFLK 2201
L G E W ++ ++ T ++NI A HR Q+ LQ +++R+ ++ DPL LA+E FLK
Sbjct: 933 LLEGQT--EENSWLEMEDVVTEIINISARHRAAQEKLQARYMREKSLLDPLALAAENFLK 990
Query: 2202 QESRKALCYMPRVEMEMHGVQSQAAGCYYLCVDQKLYTCTDDGNLVETHCEKPDYER-WE 2378
E + A +E+E G+ G L VD LY E Y+R W+
Sbjct: 991 GEVQNAYLDFSGLELEKAGIPKPQGG-RGLYVDGSLYLLDPTFQFEEIPITDDGYKRLWD 1049
Query: 2379 KNSSENFVGGVQALDALECRSILVSGFLRNLVQGQCCVLSVDEMSTTATMAQQRLFKALQ 2558
+ ++F+ +Q + L +S++V+GFLR+LV G C VLS D +S++A++AQQ +FKAL
Sbjct: 1050 ERMRKSFLSKIQTGEYLNSKSMVVTGFLRSLVNGDCAVLSKDTLSSSASVAQQSIFKALG 1109
Query: 2559 LQERVYLRLIQKKISPILSEAESNVYSKNAWMRCLEFAAASRDYLKEHGXXXXXXXXXXX 2738
+ ER+YLR +Q ++ ++ N YS +AW++ L+ R YL E+G
Sbjct: 1110 IDERIYLRTLQHQLDLYSADIPENPYSNSAWIKILKAIGMGRTYLAENGCGILMIAAALI 1169
Query: 2739 XXXXXXYYFIGAFIGVXXXXXXXXXXXXXXKEVDMKAQYSSGAQDGRYRSRNIPIRQRYR 2918
+ F FIG+ VD+KAQ S +Q+G YR+RNIPI RY
Sbjct: 1170 LILVSAWGFWKLFIGLFSGSMSLGAAIVGMSAVDIKAQQKSSSQEGGYRARNIPIHHRYA 1229
Query: 2919 YARGELDEEVPLGGQLAVALYGSQGRFISAMQYKGKSVMLTRHQMLMFAEKERVTCIYLA 3098
YA+ + + + +L VA+Y G F+SAMQYK KSV +TRHQ L F E E++T I+ +
Sbjct: 1230 YAKSQAGDGLLPAARLCVAIYQPGGGFVSAMQYKNKSVRMTRHQALRFQEGEQLTVIFSS 1289
Query: 3099 TGESVVLTFNRDDVQEFPNHETCLWQAAGMLQLPAKFKDCFLEKGETELAPAFELEGYVL 3278
TGES ++ +++ ++E P E W A + L KD FLE E +L F+ GYVL
Sbjct: 1290 TGESQLIRWHKYHMREEPGSEIVTWLAPSLPSLSPDLKDLFLEDKEVDLPNHFKTIGYVL 1349
Query: 3279 RPDSTAFHYDHLKTWARVQYEPFVVRGNLAREKYVNELPTSIWFQYQSRNNDCGMICLAQ 3458
R D+TAFHYD L T+A V P ++G + E Y++E+P I F Y+SRN+DCGMI L Q
Sbjct: 1350 RVDNTAFHYDLLDTYAAVDKTPLPLKGVVGNELYLHEIPEKITFHYESRNDDCGMIILCQ 1409
Query: 3459 VGGKKKIVGLLVAGVDQQTWADILPNPCMAEMKSQIEYEFKLGVHTEGYTKLGYLTKDKA 3638
+ GK ++VG+LVAG D+ +WADI+P +AE++SQIEY K G +G+ K GY+ A
Sbjct: 1410 IKGKMRVVGMLVAGKDKTSWADIMPPNTLAELQSQIEYIPKFGEAYDGFFKAGYVPMADA 1469
Query: 3639 PHLPKKNSAVLVRPEYRIDSPVPIKEPSVISVEDPRCPKDSEGKPVDPIMKAFEKKFTTP 3818
P LPKK + V V R+ VPIKEP+V++ D RCP V+P + A +KKF P
Sbjct: 1470 PTLPKKTNMVPVPQSLRVPCDVPIKEPAVLTNADKRCPAG-----VNPPVTALKKKFEHP 1524
Query: 3819 MDLLEDDILESIAQEMIEEWHDCESEPLRDVPLEVAINGIPGTQIDDDDEFEDAVECFKM 3998
M LE +IL+ +A +++E W+DCE L D+PL VAINGIP D E +E F M
Sbjct: 1525 MKELEQEILDEVATDILETWYDCEDHVLNDIPLVVAINGIPA------DSEEAELENFVM 1578
Query: 3999 STSPGYPYVLHKEV-GMKGKEAYFELAPDGTKSLKEGTLAAELYENIVQYSKSAIPELVV 4175
TSPGYPY + +KGK AYFE A DGT LKEG +AA+L+EN+V+++K+ +PELVV
Sbjct: 1579 KTSPGYPYFKNNRAEKLKGKSAYFEEAEDGTLKLKEGGMAAKLHENLVEFTKNEVPELVV 1638
Query: 4176 IECPKDELLKTEKIKQGACRLFEIMPLHYNLFLREKTLAFSLFQQRNRHKLACQVGTKAY 4355
IEC KDELL KIK GACRLFEIMPLHYNLFLR+KT AF+ F Q NRH L CQVGT Y
Sbjct: 1639 IECTKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQHNRHVLPCQVGTNPY 1698
Query: 4356 SHDWTHMYQRLV-AKSDRAINCDYSGFDGLLNSQVVRCIANMINSMYHSPEETIVSKRQR 4532
S +W HM RL+ K++ AINCDYSGFDGLLN+QV+ CIA MIN +Y E+ V + QR
Sbjct: 1699 SREWGHMLNRLMRPKTNEAINCDYSGFDGLLNAQVIECIAKMINRLYALSGESEVQQAQR 1758
Query: 4533 YNMINALFGRLAILVTGTDRDVMRVRAGLPSGFALTVVINSIFNEILMRYCFKVLVPGPQ 4712
YNM+ AL GR A + +V +V GLPSGFALTVV+NS+FNEIL+RY +K L P P+
Sbjct: 1759 YNMLMALVGRYAFV----GPEVYKVNCGLPSGFALTVVVNSVFNEILIRYAYKKLAPKPE 1814
Query: 4713 RNSFSTYVTLLVYGDDNLMSCTDKVATYFNGESIKATLKKKNVTITDGSDKTSPTIEWKA 4892
RN F+ V LLVYGDDNL+S + +A++F GE+I+ TL +K V ITDGSDK +PTIE K+
Sbjct: 1815 RNRFNQVVCLLVYGDDNLISVSPSIASWFTGEAIRITLAEKKVKITDGSDKDAPTIEAKS 1874
Query: 4893 PGELDXXXXXXXXXXTGVVQAPLDLSAIFSCLHWVTPHPQKM--PKGGAQLQVDSVDTLY 5066
ELD G+VQAPLD SAIFS L+W+TP K + + Q +VD +
Sbjct: 1875 FWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKFHASQRASDFQ-GTVDVVE 1933
Query: 5067 ELALNVQVALTELYLHDDKEEFQRVRNFYVKKMNILPTGYYTWADREAFHMSKQTGMEAY 5246
EL LNV VAL ELYLH+D EF RVR+FY+K + + + TWA EAFH ++QTGM Y
Sbjct: 1934 ELILNVNVALMELYLHNDPREFSRVRDFYIKALPLATGQFRTWAFCEAFHSAQQTGMLKY 1993
Query: 5247 QPAKEIDIDVGQEFARFMHTSDIGNQVHFYTPVLGVAGPFYKPTPDQLLVSTTPLKQGES 5426
PAK +D G +F +FMH S+ GN+ HFYT +LGVAGP YKP + +VST PLK G
Sbjct: 1994 DPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTEMLGVAGPHYKPQENDFIVSTEPLKMGVC 2053
Query: 5427 GYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKSLVFRSEAPY 5606
G VP++ G G+G LPT WV F RP+QL + GY I LR+ IE+GK LVF S APY
Sbjct: 2054 GEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKLGYLIHPILRAQIEAGKRLVFMSPAPY 2113
Query: 5607 VAGNAALMAFGQSAGLLEIQTALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAE 5786
VA NAAL+AFG +L + AL YRNVIPEST+GLEQYFDA +P A++ G FYFAN E
Sbjct: 2114 VANNAALIAFGTGGKMLIQKDALVHYRNVIPESTSGLEQYFDAPLPTATI-GTFYFANGE 2172
Query: 5787 TEFLLQEHKTGTII 5828
T L E+K G ++
Sbjct: 2173 TYAALCEYKEGKVL 2186
>ref|NP_619705.1| polyprotein [Grapevine chrome mosaic virus]
gi|130391|sp|P13025.1|POL1_GCMV RecName: Full=RNA1
polyprotein; AltName: Full=P1; Contains: RecName:
Full=P1A protein; Short=1A; AltName: Full=Protease
cofactor; Contains: RecName: Full=Putative ATP-dependent
helicase; AltName: Full=1B; AltName:
Full=Membrane-binding protein; AltName: Full=NTP-binding
protein; Short=NTB; Contains: RecName: Full=Viral
genome-linked protein; AltName: Full=1C-VPg; Contains:
RecName: Full=Picornain 3C-like protease; Short=3C-like
protease; AltName: Full=1D-PRO; Contains: RecName:
Full=RNA-directed RNA polymerase; AltName: Full=1E-POL
gi|59346|emb|CAA33405.1| unnamed protein product
[Grapevine chrome mosaic virus]
Length = 2252
Score = 1528 bits (3957), Expect = 0.0
Identities = 856/1945 (44%), Positives = 1163/1945 (59%), Gaps = 13/1945 (0%)
Frame = +3
Query: 42 EVVHSVPQNPLWGLYPCVGLGANMADPVCRVLSACVPIAGKRPDLVSTIYAFITGEAQIW 221
EV H+ +NP+ L P GLGA ADP C V++ C + +L S IY+ + G
Sbjct: 298 EVPHT--RNPMAELVPYKGLGAVSADPRCWVVAQCGKFSATHANLCSEIYSMVIGPWVQL 355
Query: 222 LSAPRVCRLARRIIELSDWYPHELLAEELEKISDEENCKDAE--REINLKYLEISQATEN 395
+ + I L D+YP + L L++++ E A + + +E + + N
Sbjct: 356 TDFSSIRQFVMNISFLKDFYPEDALIASLKEVNTEAQLAVAAIVTQEEVSKMEANARSAN 415
Query: 396 MRAGGLFDKIKGKAQDLWTSVVDFASHPFRRYLATTAEFVEGFSHRVVDAVMSRVNAAIA 575
RA +F +I + TS + F T + + S V V+ A+
Sbjct: 416 CRAN-IFKRIASRI----TSAACSVKNAFLDGCELTGKRL---SEGVFSVVIGHFREALT 467
Query: 576 QFAAQLDIARTIVDQLVVHVKRWYTSLCTSFDDSLKLLGKWAGYALGLIVGVGVCHLVEV 755
+L +A +V+ L+ VK W+ +L D +L LGKWA YALG+++G+G+C+L+E
Sbjct: 468 TIKFELGVAMELVEVLIARVKSWFDTLLAKIDHALASLGKWACYALGILLGIGLCNLIET 527
Query: 756 ICAHMGLPLGGVITGVFTTAYM----GWLFVKTPVGSELVMGLRLQVARIARNFFDCQRV 923
I G+ + TGVF T + GW E+V + +A++ F ++
Sbjct: 528 IIGGHGMLVSLFCTGVFATMAIKCAGGW----DAAQREMVA----MITTLAQSIFGRRKG 579
Query: 924 GVPPDLPPNPNVGYSVPYEAFGGIGGQPFTMGPDAPNARAIPVVSPIINAMAGFGASMLS 1103
DL N R+IP+++ +I AM FG +
Sbjct: 580 LDSTDL------------------------------NTRSIPLLTNVITAMTTFGTGLCK 609
Query: 1104 MKAMGLIEMGKLGAACHSLRMGKDALCEFVSTVLYYFGRLADKVTGRETEFFDELSILVQ 1283
++ +IE+GKL ACH +RMGK+AL EF + +++Y GR+ADK+TGRET FFDELS LV
Sbjct: 610 FQSSSIIEIGKLAGACHQMRMGKEALKEFAAMIMHYLGRIADKITGRETIFFDELSTLVS 669
Query: 1284 IDVQDWIKRSRGVLLESCYTSLNNMILSDVVNKLVMDGERLQVTIAGTPRRLSLDFGQLV 1463
+DV+ WI+ ++G +LES +T DV+ +LV +G++LQV + G PR++S D+ L+
Sbjct: 670 VDVRGWIRCAQGAILESYHTDPGCETFQDVIGRLVQEGQKLQVGVNGIPRKISADYASLI 729
Query: 1464 SSIMKDLLDLQQRIVRHGVTVGRRKEPTWIYIFGPSHCGKSNMMDHLTSEVCRYFDLPYT 1643
IMKDLL+LQ+R++R G GRRKEP WIY++GPSHCGKSN MD L +C++FDLPYT
Sbjct: 730 GQIMKDLLELQKRMMRCGTVTGRRKEPVWIYLWGPSHCGKSNFMDVLGMALCKHFDLPYT 789
Query: 1644 FIARNGQDNFFTTGYKRQSVLQIDDLSCVETTPPIEGELINLVACSEYPLKMADLSDKSI 1823
RN +D+FF+ GY Q++++IDDLS ++T PP+EGELINLV+C +YPL MAD++DK I
Sbjct: 790 VCGRNVKDSFFS-GYMGQTIMEIDDLSSIKTDPPMEGELINLVSCKDYPLNMADVADKPI 848
Query: 1824 SFQSPFVISTSNQRTCLPTCGITHCEAYNNRRAVVVEMRRKPGVIFDPMDCHAAMQGRFL 2003
F+S FVIS+SNQ G+ +Y +R+A ++E+RRKPGVIFDP + AA Q RF
Sbjct: 849 YFKSQFVISSSNQEDVPAGAGVRDISSYRSRKAALIEVRRKPGVIFDPDNAMAASQARFK 908
Query: 2004 DKRDHTPLFGVQGQPETYWKDVPEMTTILLNICAAHRQEQDILQEQHIRKHAVNDPLILA 2183
D H L G E W ++ ++ T +NI A HR Q+ LQ +R A DP+ LA
Sbjct: 909 DPMTHMLLNGQND--ENSWMEMDDVITECINISARHRAAQEKLQNASLRAKASLDPVTLA 966
Query: 2184 SERFLKQESRKALCYMPRVEMEMHGVQSQAAG-CYYLCVDQKLYTCTDDGNLVETHCEKP 2360
S+ FL++E +P +E+E G+ G C Y D LYT + L+ E
Sbjct: 967 SQEFLRKEVNSVYLEIPTLEIEKAGISGVRGGRCLY--ADGILYTLGTEFQLIPHPVENE 1024
Query: 2361 DYER-WEKNSSENFVGGVQALDALECRSILVSGFLRNLVQGQCCVLSVDEMSTTATMAQQ 2537
Y++ W + ++ V L S++V+GFLR+LV G C VLSVD +STTAT Q+
Sbjct: 1025 GYQKLWAQRMKNMYLPAVTTGRYLNASSMIVTGFLRSLVNGDCAVLSVDALSTTATFTQK 1084
Query: 2538 RLFKALQLQERVYLRLIQKKISPILSEAESNVYSKNAWMRCLEFAAASRDYLKEHGXXXX 2717
R+F++L L ERVYLR +Q +I + N YS W++ L+ R+++ +G
Sbjct: 1085 RIFESLNLAERVYLRALQCQIDAYTLDIPENPYSNVCWVKMLKALGQGREFIVSNGGGIL 1144
Query: 2718 XXXXXXXXXXXXXYYFIGAFIGVXXXXXXXXXXXXXXKEVDMKAQ--YSSGAQDGRYRSR 2891
+ F AF+G+ +E ++KA YS+ D YRSR
Sbjct: 1145 MIAAAIILVLVCGWGFWKAFVGLFTGSMSLGAALAGCQEAEVKAHSVYSADGGDRGYRSR 1204
Query: 2892 NIPIRQRYRYARGELDEEVPLGGQLAVALYGSQGRFISAMQYKGKSVMLTRHQMLMFAEK 3071
NIPI RY YAR + + +L VA+YG +G FIS MQYK K VM+TRHQ E
Sbjct: 1205 NIPINHRYSYARSQAGNGLLPASRLCVAIYGPRGVFISGMQYKNKCVMMTRHQAQSLNEG 1264
Query: 3072 ERVTCIYLATGESVVLTFNRDDVQEFPNHETCLWQAAGMLQLPAKFKDCFLEKGETELAP 3251
+ ++ ++ +TGES+++ F+ ++E E W A + QLP K FLE E EL
Sbjct: 1265 DELSVVFASTGESMMIRFHAYHIRENVGSEVVCWLAPSLPQLPCDLKGLFLEDAEVELPS 1324
Query: 3252 AFELEGYVLRPDSTAFHYDHLKTWARVQYEPFVVRGNLAREKYVNELPTSIWFQYQSRNN 3431
F+ GYVLR DS AFHYD L T+A V P V++G + Y++E+P I F Y+SRNN
Sbjct: 1325 NFKSMGYVLRQDSNAFHYDTLDTYAAVDKTPLVLKGVNGDDLYIHEIPEKIVFHYESRNN 1384
Query: 3432 DCGMICLAQVGGKKKIVGLLVAGVDQQTWADILPNPCMAEMKSQIEYEFKLGVHTEGYTK 3611
DCGM+ Q+ GK K+VG+LVAG D+ +WA ILPNP +AE+KSQIEY + G EGY K
Sbjct: 1385 DCGMLLTCQLSGKMKVVGMLVAGKDKTSWACILPNPHLAELKSQIEYIPEFGEAEEGYFK 1444
Query: 3612 LGYLTKDKAPHLPKKNSAVLVRPEYRIDSPVPIKEPSVISVEDPRCPKDSEGKPVDPIMK 3791
+G+++ +AP +PKK ++V V R+ +PIKEPS+IS DPRCP + VDP
Sbjct: 1445 VGHVSPKEAPTMPKKTNSVQVPQALRVPCDLPIKEPSIISKNDPRCPAN-----VDPPKA 1499
Query: 3792 AFEKKFTTPMDLLEDDILESIAQEMIEEWHDCESEPLRDVPLEVAINGIPGTQIDDDDEF 3971
A +KKF PM L+ L+ IA +M+E W+DCE L D+PL AINGIP D +
Sbjct: 1500 AMKKKFQQPMLDLDQKCLDEIAGDMLETWYDCEDSILSDIPLATAINGIPAGCEDAE--- 1556
Query: 3972 EDAVECFKMSTSPGYPYVLHKEVGMKGKEAYFELAPDGTKSLKEGTLAAELYENIVQYSK 4151
+E F M TSPGYPY +K +G KGK YFE DG+ LKEG+ AAELYEN+ Q++K
Sbjct: 1557 ---LENFVMKTSPGYPYFKNKGLG-KGKHPYFEECEDGSLKLKEGSQAAELYENMAQFAK 1612
Query: 4152 SAIPELVVIECPKDELLKTEKIKQGACRLFEIMPLHYNLFLREKTLAFSLFQQRNRHKLA 4331
+PELVVIECPKDELL KIK G CRLFEIMPLHYNL LR KT AF+ F Q NRH+L
Sbjct: 1613 EEVPELVVIECPKDELLPARKIKVGPCRLFEIMPLHYNLLLRVKTCAFTAFLQHNRHRLP 1672
Query: 4332 CQVGTKAYSHDWTHMYQRL-VAKSDRAINCDYSGFDGLLNSQVVRCIANMINSMYHSPEE 4508
CQVGT YS +W H+ RL K++ AINCDYSGFDGLL Q+V +A MIN +Y E
Sbjct: 1673 CQVGTNPYSREWGHLLNRLRRVKTNEAINCDYSGFDGLLTPQLVEMMAKMINRLYLRSGE 1732
Query: 4509 TIVSKRQRYNMINALFGRLAILVTGTDRDVMRVRAGLPSGFALTVVINSIFNEILMRYCF 4688
+ V + QR NMI AL GR A++ T V +V GLPSGFALTVV+NSIFNEIL+RY +
Sbjct: 1733 SEVMQAQRLNMIMALCGRYALVGT----QVYKVNCGLPSGFALTVVMNSIFNEILIRYAY 1788
Query: 4689 KVLVPGPQRNSFSTYVTLLVYGDDNLMSCTDKVATYFNGESIKATLKKKNVTITDGSDKT 4868
K L P P++NSF V LLVYGDDNL+S + VA++F GE+I+ TL +K + ITDGSDK
Sbjct: 1789 KTLAPTPEKNSFGINVCLLVYGDDNLISVSPAVASWFTGEAIRVTLAEKRIKITDGSDKD 1848
Query: 4869 SPTIEWKAPGELDXXXXXXXXXXT-GVVQAPLDLSAIFSCLHWVTPHPQKMP-KGGAQLQ 5042
+PTIE K ELD G V APLD SAIFSCLHW+TP K + A
Sbjct: 1849 APTIEAKPFSELDFLKRKFYVHPEHGQVWAPLDKSAIFSCLHWLTPQKSKFALQEKACDY 1908
Query: 5043 VDSVDTLYELALNVQVALTELYLHDDKEEFQRVRNFYVKKMNILPTGYYTWADREAFHMS 5222
+ VD + EL +NV V+L ELYLH+DKEEF RVR+FY+ ++ + + TWA EAFH +
Sbjct: 1909 LGEVDVVEELIINVNVSLVELYLHNDKEEFNRVRSFYIARLPMQVDQFRTWAFCEAFHSA 1968
Query: 5223 KQTGMEAYQPAKEIDIDVGQEFARFMHTSDIGNQVHFYTPVLGVAGPFYKPTPDQLLVST 5402
+QTGM + PAK +D G EF RFM S G++ HFYTP+LGV GP YKP LVST
Sbjct: 1969 QQTGMLRHDPAKILDSLAGPEFPRFMRCSGEGDKAHFYTPILGVCGPHYKPKEQDFLVST 2028
Query: 5403 TPLKQGESGYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKSL 5582
P+KQGE G +P++ G G+G LPT WV F RP+QL + GY ++ L IE GK L
Sbjct: 2029 LPIKQGE-GVHIPIKIGGGVGGLPTHQWVKNFGRPSQLKNNDGYACYKLLCEQIEQGKRL 2087
Query: 5583 VFRSEAPYVAGNAALMAFGQSAGLLEIQTALNLYRNVIPESTNGLEQYFDAAIPQASLPG 5762
VF S APYVAGNAAL++FG S +L+ Q L YRN IPES +GL YFDA +P A++ G
Sbjct: 2088 VFMSAAPYVAGNAALISFGSSRKILKEQMPLCHYRNSIPESVDGLTGYFDAPLPAATI-G 2146
Query: 5763 QFYFANAETEFLLQEHKTGTIIGLM 5837
+ YFAN ET L E K G ++ ++
Sbjct: 2147 KSYFANGETYAALCEFKNGEVLDIV 2171
>prf||1507292A polyprotein
Length = 2264
Score = 1506 bits (3899), Expect = 0.0
Identities = 848/1934 (43%), Positives = 1158/1934 (59%), Gaps = 7/1934 (0%)
Frame = +3
Query: 48 VHSVPQ-NPLWGLYPCVGLGANMADPVCRVLSACVPIAGKRPDLVSTIYAFITGEAQIWL 224
V S P+ N L L P +GLGA AD C+ I + P L S IYA++ G + +
Sbjct: 298 VTSTPKPNVLENLCPFMGLGAKTADVRCQATLMAGKIHPQYPRLASAIYAWVLGPSMKFE 357
Query: 225 SAPRVCRLARRIIELSDWYPHELLAEELEKISDEENCKDAEREINLKYLEISQATENMRA 404
V + + + D++P E+L +EL KI+ E C +A + + ++ EN
Sbjct: 358 CIAPVKTFIKGLTFMVDYFPEEVLIDELNKINSEARCFEASLVLEEERAKLEAHAENANC 417
Query: 405 -GGLFDKIKGKAQDLWTSVVDFASHPFRRYLATTAEFVEGFSHRVVDAVMSRVNAAIAQF 581
+F K V + A + +L E S V +++ I
Sbjct: 418 RANIFMKAMA-------GVKNMAKCAYSGFLTGCEEAGRSLSEGVCSVMINSFRECIKMI 470
Query: 582 AAQLDIARTIVDQLVVHVKRWYTSLCTSFDDSLKLLGKWAGYALGLIVGVGVCHLVEVIC 761
+L A +++ ++ VK WY S+ L LG +A YAL +++G G+ L+E
Sbjct: 471 HKELGCAMELIEVMIKKVKDWYNSMLEKLHCGLATLGTYAMYALAILLGCGLTTLLERCI 530
Query: 762 AHMGLPLGGVITGVFTTAYMGWLFVKTPVGSELVMGLRLQVARIARNFFDCQRVGVPPDL 941
G+ +TGVF + + E+V +A FD G
Sbjct: 531 GGAGILTKLFVTGVFAAIGLHAAGGFDGLQREMVQ----MCTALAAGIFDVHHKG----- 581
Query: 942 PPNPNVGYSVPYEAFGGIGGQPFTMGPDAPNARAIPVVSPIINAMAGFGASMLSMKAMGL 1121
+ Y I + A N R+IP++S II+AM FG + SM ++ L
Sbjct: 582 --------NGKYSPMADILAEQRLEDRRADNVRSIPIISGIISAMQQFGTGLCSMHSISL 633
Query: 1122 IEMGKLGAACHSLRMGKDALCEFVSTVLYYFGRLADKVTGRETEFFDELSILVQIDVQDW 1301
IE+GKLGAACHS+RMGK+AL EF +T++YY GR++DKVTGRET FFDELS LV +DV+ W
Sbjct: 634 IEIGKLGAACHSMRMGKEALKEFCATIMYYLGRISDKVTGRETVFFDELSTLVSVDVRGW 693
Query: 1302 IKRSRGVLLESCYTSLNNMILSDVVNKLVMDGERLQVTIAGTPRRLSLDFGQLVSSIMKD 1481
I ++ + ES +T + N D+V +LV DG++LQV + G PR++S D+ QL SS +
Sbjct: 694 ILCAQSCIRESFHTEIGNQFFRDMVAQLVDDGQKLQVGVNGIPRKISTDYSQL-SSDTEG 752
Query: 1482 LLDLQQRIVRHGVTVGRRKEPTWIYIFGPSHCGKSNMMDHLTSEVCRYFDLPYTFIARNG 1661
+L +R +R G++ GRR EP WIY+FG HCGKSN M L + + ++F LP T RN
Sbjct: 753 PNELHKRTIRAGISEGRRCEPVWIYLFGQRHCGKSNFMATLDNALAKHFGLPNTTAYRNC 812
Query: 1662 QDNFFTTGYKRQSVLQIDDLSCVETTPPIEGELINLVACSEYPLKMADLSDKSISFQSPF 1841
+D+FF+ GY Q+ +DDLS V+ PP+E E+INLV+C E PL MADL+DK I F+SPF
Sbjct: 813 KDSFFS-GYSGQTFFHVDDLSSVKLDPPMEAEMINLVSCQEVPLNMADLADKPIYFRSPF 871
Query: 1842 VISTSNQRTCLPTCGITHCEAYNNRRAVVVEMRRKPGVIFDPMDCHAAMQGRFLDKRDHT 2021
+IS+SN CG+ EAY +R+A +VEMRRKPGV+FDP + A Q RF D
Sbjct: 872 IISSSNFEDVPAGCGVRDIEAYRSRKACLVEMRRKPGVLFDPDNPLLASQARFKDPMSQM 931
Query: 2022 PLFGVQGQPETYWKDVPEMTTILLNICAAHRQEQDILQEQHIRKHAVNDPLILASERFLK 2201
L G E W ++ ++ T ++NI A HR Q+ LQ +++R+ ++ DPL LA+E FLK
Sbjct: 932 LLEGQT--EENSWLEMEDVVTEIINISARHRAAQEKLQARYMREKSLLDPLALAAENFLK 989
Query: 2202 QESRKALCYMPRVEMEMHGVQSQAAGCYYLCVDQKLYTCTDDGNLVETHCEKPDYER-WE 2378
E + + + ++ + Q Y VD LY E Y+R W+
Sbjct: 990 GEVQTHILIFLVLNLKSWNPKPQGGRGLY--VDGSLYLLDPTFQFEEIPITDDGYKRLWD 1047
Query: 2379 KNSSENFVGGVQALDALECRSILVSGFLRNLVQGQCCVLSVDEMSTTATMAQQRLFKALQ 2558
+ ++F+ +Q + L +S++V+GFLR+LV G C VLS D +S++A++AQQ +FKAL
Sbjct: 1048 ERMRKSFLSKIQTGEYLNSKSMVVTGFLRSLVNGDCAVLSKDTLSSSASVAQQSIFKALG 1107
Query: 2559 LQERVYLRLIQKKISPILSEAESNVYSKNAWMRCLEFAAASRDYLKEHGXXXXXXXXXXX 2738
+ ER+YLR +Q ++ ++ N YS +AW++ L+ R YL E+G
Sbjct: 1108 IDERIYLRTLQHQLDLYSADIPENPYSNSAWIKILKAIGMGRTYLAENGCGILMIAAALI 1167
Query: 2739 XXXXXXYYFIGAFIGVXXXXXXXXXXXXXXKEVDMKAQYSSGAQDGRYRSRNIPIRQRYR 2918
+ F FIG+ VD+KAQ S +Q+G YR+RNIPI RY
Sbjct: 1168 LILVSAWGFWKLFIGLFSGSMSLGAAIVGMSAVDIKAQQKSSSQEGGYRARNIPIHHRYA 1227
Query: 2919 YARGELDEEVPLGGQLAVALYGSQGRFISAMQYKGKSVMLTRHQMLMFAEKERVTCIYLA 3098
YA+ + + + + + G F+SAMQYK KSV +TRHQ L F E E++T I+ +
Sbjct: 1228 YAKSQAGDGLLPAARFVCCYLSTGGGFVSAMQYKNKSVRMTRHQALRFQEGEQLTVIFSS 1287
Query: 3099 TGESVVLTFNRDDVQEFPNHETCLWQAAGMLQLPAKFKDCFLEKGETELAPAFELEGYVL 3278
TGES ++ +++ ++E P E W A + L KD FLE E +L F+ GYVL
Sbjct: 1288 TGESQLIRWHKYHMREEPGSEIVTWLAPSLPSLSPDLKDLFLEDKEVDLPNHFKTIGYVL 1347
Query: 3279 RPDSTAFHYDHLKTWARVQYEPFVVRGNLAREKYVNELPTSIWFQYQSRNNDCGMICLAQ 3458
R D+TAFHYD L T+A V P ++G + E Y++E+P I F Y+SRN+DCGMI L Q
Sbjct: 1348 RVDNTAFHYDLLDTYAAVDKTPLPLKGVVGNELYLHEIPEKITFHYESRNDDCGMIILCQ 1407
Query: 3459 VGGKKKIVGLLVAGVDQQTWADILPNPCMAEMKSQIEYEFKLGVHTEGYTKLGYLTKDKA 3638
+ GK ++VG+LVAG D+ +WADI+P +AE++SQIEY K G +G+ K GY+ A
Sbjct: 1408 IKGKMRVVGMLVAGKDKTSWADIMPPNTLAELQSQIEYIPKFGEAYDGFFKAGYVPMADA 1467
Query: 3639 PHLPKKNSAVLVRPEYRIDSPVPIKEPSVISVEDPRCPKDSEGKPVDPIMKAFEKKFTTP 3818
P LPKK + V V R+ VPIKEP+V++ D RCP V+P + A +KKF P
Sbjct: 1468 PTLPKKTNMVPVPQSLRVPCDVPIKEPAVLTNADKRCPAG-----VNPPVTALKKKFEHP 1522
Query: 3819 MDLLEDDILESIAQEMIEEWHDCESEPLRDVPLEVAINGIPGTQIDDDDEFEDAVECFKM 3998
M LE +IL+ +A +++E W+DCE L D+PL VAINGIP D E +E F M
Sbjct: 1523 MKELEQEILDEVATDILETWYDCEDHVLNDIPLVVAINGIPA------DSEEAELENFVM 1576
Query: 3999 STSPGYPYVLHKEV-GMKGKEAYFELAPDGTKSLKEGTLAAELYENIVQYSKSAIPELVV 4175
TSPGYPY + +KGK AYFE A DGT LKEG +AA+L+EN+V+++K+ +PELVV
Sbjct: 1577 KTSPGYPYFKNNRAEKLKGKSAYFEEAEDGTLKLKEGGMAAKLHENLVEFTKNEVPELVV 1636
Query: 4176 IECPKDELLKTEKIKQGACRLFEIMPLHYNLFLREKTLAFSLFQQRNRHKLACQVGTKAY 4355
IEC KDELL KIK GACRLFEIMPLHYNLFLR+KT AF+ F Q NRH L CQVGT Y
Sbjct: 1637 IECTKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQHNRHVLPCQVGTNPY 1696
Query: 4356 SHDWTHMYQRLV-AKSDRAINCDYSGFDGLLNSQVVRCIANMINSMYHSPEETIVSKRQR 4532
S +W HM RL+ K++ AINCDYSGFDGLLN+QV+ CIA MIN +Y E+ V + QR
Sbjct: 1697 SREWGHMLNRLMRPKTNEAINCDYSGFDGLLNAQVIECIAKMINRLYALSGESEVQQAQR 1756
Query: 4533 YNMINALFGRLAILVTGTDRDVMRVRAGLPSGFALTVVINSIFNEILMRYCFKVLVPGPQ 4712
YNM+ AL GR A + +V +V GLPSGFALTVV+NS+FNEIL+RY +K L P P+
Sbjct: 1757 YNMLMALVGRYAFV----GPEVYKVNCGLPSGFALTVVVNSVFNEILIRYAYKKLAPKPE 1812
Query: 4713 RNSFSTYVTLLVYGDDNLMSCTDKVATYFNGESIKATLKKKNVTITDGSDKTSPTIEWKA 4892
RN F+ V LLVYGDDNL+S + +A++F GE+I+ TL +K V ITDGSDK +PTIE K+
Sbjct: 1813 RNRFNQVVCLLVYGDDNLISVSPSIASWFTGEAIRITLAEKKVKITDGSDKDAPTIEAKS 1872
Query: 4893 PGELDXXXXXXXXXXTGVVQAPLDLSAIFSCLHWVTPHPQKM--PKGGAQLQVDSVDTLY 5066
ELD G+VQAPLD SAIFS L+W+TP K + + Q +VD +
Sbjct: 1873 FWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKFHASQRASDFQ-GTVDVVE 1931
Query: 5067 ELALNVQVALTELYLHDDKEEFQRVRNFYVKKMNILPTGYYTWADREAFHMSKQTGMEAY 5246
EL LNV VAL ELYLH+D EF RVR+FY+K + + + TWA EAFH ++QTGM Y
Sbjct: 1932 ELILNVNVALMELYLHNDPREFSRVRDFYIKALPLATGQFRTWAFCEAFHSAQQTGMLKY 1991
Query: 5247 QPAKEIDIDVGQEFARFMHTSDIGNQVHFYTPVLGVAGPFYKPTPDQLLVSTTPLKQGES 5426
PAK +D G +F +FMH S+ GN+ HFYT +LGVAGP YKP + +VST PLK G
Sbjct: 1992 DPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTEMLGVAGPHYKPQENDFIVSTEPLKMGVC 2051
Query: 5427 GYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKSLVFRSEAPY 5606
G VP++ G G+G LPT WV F RP+QL + GY I LR+ IE+GK LVF S APY
Sbjct: 2052 GEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKLGYLIHPILRAQIEAGKRLVFMSPAPY 2111
Query: 5607 VAGNAALMAFGQSAGLLEIQTALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAE 5786
VA NAAL+AFG +L + AL YRNVIPEST+GLEQYFDA +P A++ G FYFAN E
Sbjct: 2112 VANNAALIAFGTGGKMLIQKDALVHYRNVIPESTSGLEQYFDAPLPTATI-GTFYFANGE 2170
Query: 5787 TEFLLQEHKTGTII 5828
T L E+K G ++
Sbjct: 2171 TYAALCEYKEGKVL 2184
>sp|P18522.1|POL1_BRSV RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName:
Full=P1A protein; Short=1A; AltName: Full=Protease
cofactor; Contains: RecName: Full=Putative ATP-dependent
helicase; AltName: Full=1B; AltName:
Full=Membrane-binding protein; AltName: Full=NTP-binding
protein; Short=NTB; Contains: RecName: Full=Viral
genome-linked protein; AltName: Full=1C-VPg; Contains:
RecName: Full=Picornain 3C-like protease; Short=3C-like
protease; AltName: Full=1D-PRO; Contains: RecName:
Full=RNA-directed RNA polymerase; AltName: Full=1E-POL
Length = 2264
Score = 1505 bits (3897), Expect = 0.0
Identities = 848/1934 (43%), Positives = 1158/1934 (59%), Gaps = 7/1934 (0%)
Frame = +3
Query: 48 VHSVPQ-NPLWGLYPCVGLGANMADPVCRVLSACVPIAGKRPDLVSTIYAFITGEAQIWL 224
V S P+ N L L P +GLGA AD C+ I + P L S IYA++ G + +
Sbjct: 298 VTSTPKPNVLENLCPFMGLGAKTADVRCQATLMAGKIHPQYPRLASAIYAWVLGPSMKFE 357
Query: 225 SAPRVCRLARRIIELSDWYPHELLAEELEKISDEENCKDAEREINLKYLEISQATENMRA 404
V + + + D++P E+L +EL KI+ E C +A + + ++ EN
Sbjct: 358 CIAPVKTFIKGLTFMVDYFPEEVLIDELNKINSEARCFEASLVLEEERAKLEAHAENANC 417
Query: 405 -GGLFDKIKGKAQDLWTSVVDFASHPFRRYLATTAEFVEGFSHRVVDAVMSRVNAAIAQF 581
+F K V + A + +L E S V +++ I
Sbjct: 418 RANIFMKAMA-------GVKNMAKCAYSGFLTGCEEAGRSLSEGVCSVMINSFRECIKMI 470
Query: 582 AAQLDIARTIVDQLVVHVKRWYTSLCTSFDDSLKLLGKWAGYALGLIVGVGVCHLVEVIC 761
+L A +++ ++ VK WY S+ L LG +A YAL +++G G+ L+E
Sbjct: 471 HKELGCAMELIEVMIKKVKDWYNSMLEKLHCGLATLGTYAMYALAILLGCGLTTLLERCI 530
Query: 762 AHMGLPLGGVITGVFTTAYMGWLFVKTPVGSELVMGLRLQVARIARNFFDCQRVGVPPDL 941
G+ +TGVF + + E+V +A FD G
Sbjct: 531 GGAGILTKLFVTGVFAAIGLHAAGGFDGLQREMVQ----MCTALAAGIFDVHHKG----- 581
Query: 942 PPNPNVGYSVPYEAFGGIGGQPFTMGPDAPNARAIPVVSPIINAMAGFGASMLSMKAMGL 1121
+ Y I + A N R+IP++S II+AM FG + SM ++ L
Sbjct: 582 --------NGKYSPMADILAEQRLEDRRADNVRSIPIISGIISAMQQFGTGLCSMHSISL 633
Query: 1122 IEMGKLGAACHSLRMGKDALCEFVSTVLYYFGRLADKVTGRETEFFDELSILVQIDVQDW 1301
IE+GKLGAACHS+RMGK+AL EF +T++YY GR++DKVTGRET FFDELS LV +DV+ W
Sbjct: 634 IEIGKLGAACHSMRMGKEALKEFCATIMYYLGRISDKVTGRETVFFDELSTLVSVDVRGW 693
Query: 1302 IKRSRGVLLESCYTSLNNMILSDVVNKLVMDGERLQVTIAGTPRRLSLDFGQLVSSIMKD 1481
I ++ + ES +T + N D+V +LV DG++LQV + G PR++S D+ QL SS +
Sbjct: 694 ILCAQSCIRESFHTEIGNQFFRDMVAQLVDDGQKLQVGVNGIPRKISTDYSQL-SSDTEG 752
Query: 1482 LLDLQQRIVRHGVTVGRRKEPTWIYIFGPSHCGKSNMMDHLTSEVCRYFDLPYTFIARNG 1661
+L +R +R G++ GRR EP WIY+FG HCGKSN M L + + ++F LP T RN
Sbjct: 753 PNELHKRTIRAGISEGRRCEPVWIYLFGQRHCGKSNFMATLDNALAKHFGLPNTTAYRNC 812
Query: 1662 QDNFFTTGYKRQSVLQIDDLSCVETTPPIEGELINLVACSEYPLKMADLSDKSISFQSPF 1841
+D+FF+ GY Q+ +DDLS V+ PP+E E+INLV+C E PL MADL+DK I F+SPF
Sbjct: 813 KDSFFS-GYSGQTFFHVDDLSSVKLDPPMEAEMINLVSCQEVPLNMADLADKPIYFRSPF 871
Query: 1842 VISTSNQRTCLPTCGITHCEAYNNRRAVVVEMRRKPGVIFDPMDCHAAMQGRFLDKRDHT 2021
+IS+SN CG+ EAY +R+A +VEMRRKPGV+FDP + A Q RF D
Sbjct: 872 IISSSNFEDVPAGCGVRDIEAYRSRKACLVEMRRKPGVLFDPDNPLLASQARFKDPMSQM 931
Query: 2022 PLFGVQGQPETYWKDVPEMTTILLNICAAHRQEQDILQEQHIRKHAVNDPLILASERFLK 2201
L G E W ++ ++ T ++NI A HR Q+ LQ +++R+ ++ DPL LA+E FLK
Sbjct: 932 LLEGQT--EENSWLEMEDVVTEIINISARHRAAQEKLQARYMREKSLLDPLALAAENFLK 989
Query: 2202 QESRKALCYMPRVEMEMHGVQSQAAGCYYLCVDQKLYTCTDDGNLVETHCEKPDYER-WE 2378
E + + + ++ + Q Y VD LY E Y+R W+
Sbjct: 990 GEVQTHILIFLVLNLKSWNPKPQGGRGLY--VDGSLYLLDPTFQFEEIPITDDGYKRLWD 1047
Query: 2379 KNSSENFVGGVQALDALECRSILVSGFLRNLVQGQCCVLSVDEMSTTATMAQQRLFKALQ 2558
+ ++F+ +Q + L +S++V+GFLR+LV G C VLS D +S++A++AQQ +FKAL
Sbjct: 1048 ERMRKSFLSKIQTGEYLNSKSMVVTGFLRSLVNGDCAVLSKDTLSSSASVAQQSIFKALG 1107
Query: 2559 LQERVYLRLIQKKISPILSEAESNVYSKNAWMRCLEFAAASRDYLKEHGXXXXXXXXXXX 2738
+ ER+YLR +Q ++ ++ N YS +AW++ L+ R YL E+G
Sbjct: 1108 IDERIYLRTLQHQLDLYSADIPENPYSNSAWIKILKAIGMGRTYLAENGCGILMIAAALI 1167
Query: 2739 XXXXXXYYFIGAFIGVXXXXXXXXXXXXXXKEVDMKAQYSSGAQDGRYRSRNIPIRQRYR 2918
+ F FIG+ VD+KAQ S +Q+G YR+RNIPI RY
Sbjct: 1168 LILVSAWGFWKLFIGLFSGSMSLGAAIVGMSAVDIKAQQKSSSQEGGYRARNIPIHHRYA 1227
Query: 2919 YARGELDEEVPLGGQLAVALYGSQGRFISAMQYKGKSVMLTRHQMLMFAEKERVTCIYLA 3098
YA+ + + + + + G F+SAMQYK KSV +TRHQ L F E E++T I+ +
Sbjct: 1228 YAKSQAGDGLLPAARFVCCYLSTGGGFVSAMQYKNKSVRMTRHQALRFQEGEQLTVIFSS 1287
Query: 3099 TGESVVLTFNRDDVQEFPNHETCLWQAAGMLQLPAKFKDCFLEKGETELAPAFELEGYVL 3278
TGES ++ +++ ++E P E W A + L KD FLE E +L F+ GYVL
Sbjct: 1288 TGESQLIRWHKYMMREEPGSEIVTWLAPSLPSLSPDLKDLFLEDKEVDLPNHFKTIGYVL 1347
Query: 3279 RPDSTAFHYDHLKTWARVQYEPFVVRGNLAREKYVNELPTSIWFQYQSRNNDCGMICLAQ 3458
R D+TAFHYD L T+A V P ++G + E Y++E+P I F Y+SRN+DCGMI L Q
Sbjct: 1348 RVDNTAFHYDLLDTYAAVDKTPLPLKGVVGNELYLHEIPEKITFHYESRNDDCGMIILCQ 1407
Query: 3459 VGGKKKIVGLLVAGVDQQTWADILPNPCMAEMKSQIEYEFKLGVHTEGYTKLGYLTKDKA 3638
+ GK ++VG+LVAG D+ +WADI+P +AE++SQIEY K G +G+ K GY+ A
Sbjct: 1408 IKGKMRVVGMLVAGKDKTSWADIMPPNTLAELQSQIEYIPKFGEAYDGFFKAGYVPMADA 1467
Query: 3639 PHLPKKNSAVLVRPEYRIDSPVPIKEPSVISVEDPRCPKDSEGKPVDPIMKAFEKKFTTP 3818
P LPKK + V V R+ VPIKEP+V++ D RCP V+P + A +KKF P
Sbjct: 1468 PTLPKKTNMVPVPQSLRVPCDVPIKEPAVLTNADKRCPAG-----VNPPVTALKKKFEHP 1522
Query: 3819 MDLLEDDILESIAQEMIEEWHDCESEPLRDVPLEVAINGIPGTQIDDDDEFEDAVECFKM 3998
M LE +IL+ +A +++E W+DCE L D+PL VAINGIP D E +E F M
Sbjct: 1523 MKELEQEILDEVATDILETWYDCEDHVLNDIPLVVAINGIPA------DSEEAELENFVM 1576
Query: 3999 STSPGYPYVLHKEV-GMKGKEAYFELAPDGTKSLKEGTLAAELYENIVQYSKSAIPELVV 4175
TSPGYPY + +KGK AYFE A DGT LKEG +AA+L+EN+V+++K+ +PELVV
Sbjct: 1577 KTSPGYPYFKNNRAEKLKGKSAYFEEAEDGTLKLKEGGMAAKLHENLVEFTKNEVPELVV 1636
Query: 4176 IECPKDELLKTEKIKQGACRLFEIMPLHYNLFLREKTLAFSLFQQRNRHKLACQVGTKAY 4355
IEC KDELL KIK GACRLFEIMPLHYNLFLR+KT AF+ F Q NRH L CQVGT Y
Sbjct: 1637 IECTKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQHNRHVLPCQVGTNPY 1696
Query: 4356 SHDWTHMYQRLV-AKSDRAINCDYSGFDGLLNSQVVRCIANMINSMYHSPEETIVSKRQR 4532
S +W HM RL+ K++ AINCDYSGFDGLLN+QV+ CIA MIN +Y E+ V + QR
Sbjct: 1697 SREWGHMLNRLMRPKTNEAINCDYSGFDGLLNAQVIECIAKMINRLYALSGESEVQQAQR 1756
Query: 4533 YNMINALFGRLAILVTGTDRDVMRVRAGLPSGFALTVVINSIFNEILMRYCFKVLVPGPQ 4712
YNM+ AL GR A + +V +V GLPSGFALTVV+NS+FNEIL+RY +K L P P+
Sbjct: 1757 YNMLMALVGRYAFV----GPEVYKVNCGLPSGFALTVVVNSVFNEILIRYAYKKLAPKPE 1812
Query: 4713 RNSFSTYVTLLVYGDDNLMSCTDKVATYFNGESIKATLKKKNVTITDGSDKTSPTIEWKA 4892
RN F+ V LLVYGDDNL+S + +A++F GE+I+ TL +K V ITDGSDK +PTIE K+
Sbjct: 1813 RNRFNQVVCLLVYGDDNLISVSPSIASWFTGEAIRITLAEKKVKITDGSDKDAPTIEAKS 1872
Query: 4893 PGELDXXXXXXXXXXTGVVQAPLDLSAIFSCLHWVTPHPQKM--PKGGAQLQVDSVDTLY 5066
ELD G+VQAPLD SAIFS L+W+TP K + + Q +VD +
Sbjct: 1873 FWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKFHASQRASDFQ-GTVDVVE 1931
Query: 5067 ELALNVQVALTELYLHDDKEEFQRVRNFYVKKMNILPTGYYTWADREAFHMSKQTGMEAY 5246
EL LNV VAL ELYLH+D EF RVR+FY+K + + + TWA EAFH ++QTGM Y
Sbjct: 1932 ELILNVNVALMELYLHNDPREFSRVRDFYIKALPLATGQFRTWAFCEAFHSAQQTGMLKY 1991
Query: 5247 QPAKEIDIDVGQEFARFMHTSDIGNQVHFYTPVLGVAGPFYKPTPDQLLVSTTPLKQGES 5426
PAK +D G +F +FMH S+ GN+ HFYT +LGVAGP YKP + +VST PLK G
Sbjct: 1992 DPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTEMLGVAGPHYKPQENDFIVSTEPLKMGVC 2051
Query: 5427 GYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKSLVFRSEAPY 5606
G VP++ G G+G LPT WV F RP+QL + GY I LR+ IE+GK LVF S APY
Sbjct: 2052 GEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKLGYLIHPILRAQIEAGKRLVFMSPAPY 2111
Query: 5607 VAGNAALMAFGQSAGLLEIQTALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAE 5786
VA NAAL+AFG +L + AL YRNVIPEST+GLEQYFDA +P A++ G FYFAN E
Sbjct: 2112 VANNAALIAFGTGGKMLIQKDALVHYRNVIPESTSGLEQYFDAPLPTATI-GTFYFANGE 2170
Query: 5787 TEFLLQEHKTGTII 5828
T L E+K G ++
Sbjct: 2171 TYAALCEYKEGKVL 2184
>ref|YP_006576510.1| polyprotein p1 [Grapevine Anatolian ringspot virus]
gi|400131550|emb|CCG47847.1| polyprotein p1 [Grapevine
Anatolian ringspot virus]
Length = 2243
Score = 1475 bits (3819), Expect = 0.0
Identities = 829/1927 (43%), Positives = 1147/1927 (59%), Gaps = 9/1927 (0%)
Frame = +3
Query: 81 LYPCVGLGANMADPVCRVLSACVPIAGKRPDLVSTIYAFITGEAQIWLSAPRVCRLARRI 260
L P +GLGA AD C +S IA P L S IY+++ G + + + + + +
Sbjct: 303 LCPYMGLGARDADVRCWAISKAGTIAVSHPRLASAIYSWVVGSTRSFEVSEPIRKFIGNL 362
Query: 261 IELSDWYPHELLAEELEKISDEENCKDAEREINLKYLEISQATENMRAGGLFDKIKGKA- 437
L D+YP + L EL +I+ E A L + + + +RA K
Sbjct: 363 TFLVDFYPEDALIAELGRITTEAQLFAAS-------LVLEEEKQKLRAYASSVNCKANIF 415
Query: 438 QDLWTSVVDFASHPFRRYLATTAEFVEGFSHRVVDAVMSRVNAAIAQFAAQLDIARTIVD 617
L V + A + +L + + S + ++ A+ +L IA +++
Sbjct: 416 YKLAAGVKNAACKAYGGFLEGCEQAGQKLSEGICSVMIKHFRDALTAVKHELGIAMELIE 475
Query: 618 QLVVHVKRWYTSLCTSFDDSLKLLGKWAGYALGLIVGVGVCHLVEVICAHMGLPLGGVIT 797
L+ VK WY +L D++ LGK++ YA+ +++G+G+C L+E G+ ++
Sbjct: 476 VLISRVKAWYNTLLIKMGDAVATLGKYSLYAIAILIGLGLCRLIESCIGGAGM-----LS 530
Query: 798 GVFTTAYMGWLFVKTPVG-SELVMGLRLQVARIARNFFDCQRVGVPPDLPPNPNVGYSVP 974
+F A + +K G L + +AR+ F +
Sbjct: 531 SIFAAAIFASIGLKCAGGWDNLQREMIGMCTTMARSLFGSES------------------ 572
Query: 975 YEAFGGIGGQPFTMGPDAPNARAIPVVSPIINAMAGFGASMLSMKAMGLIEMGKLGAACH 1154
A G+ G N ++IP++S ++ AM FG S+ S++ ++E+GK+ ACH
Sbjct: 573 -RANKGLDG----------NLKSIPIISSVVTAMTTFGTSLCSLQGQSVVEIGKIAGACH 621
Query: 1155 SLRMGKDALCEFVSTVLYYFGRLADKVTGRETEFFDELSILVQIDVQDWIKRSRGVLLES 1334
+RMGK+A+ EF +T+ YY GRL DK+TGRET FFDELS LV +DV+ WI+R++G +LES
Sbjct: 622 QIRMGKEAIKEFAATISYYLGRLVDKITGRETIFFDELSTLVAVDVRGWIRRAQGCILES 681
Query: 1335 CYTSLNNMILSDVVNKLVMDGERLQVTIAGTPRRLSLDFGQLVSSIMKDLLDLQQRIVRH 1514
+T ++VV +LV +G +LQV + G PR++S D+ L+ +IMKDL++L +R VR
Sbjct: 682 YHTDPGCTAFAEVVARLVDEGHKLQVGVNGIPRKISADYATLIGTIMKDLIELHKRTVRS 741
Query: 1515 GVTVGRRKEPTWIYIFGPSHCGKSNMMDHLTSEVCRYFDLPYTFIARNGQDNFFTTGYKR 1694
G T GRRKEP WIY++G HCGKSN M L + + YFDLP T RN +D FF +GY
Sbjct: 742 GCTEGRRKEPCWIYLWGQRHCGKSNFMSELDNRLSAYFDLPNTVANRNAKDQFF-SGYMG 800
Query: 1695 QSVLQIDDLSCVETTPPIEGELINLVACSEYPLKMADLSDKSISFQSPFVISTSNQRTCL 1874
Q+ L +DDLS + T PP+EGELINLV+C +YPL MAD++DK I F+SPF+IS+SN
Sbjct: 801 QTFLHVDDLSAIRTDPPMEGELINLVSCQDYPLNMADVADKPIYFRSPFIISSSNFEDVP 860
Query: 1875 PTCGITHCEAYNNRRAVVVEMRRKPGVIFDPMDCHAAMQGRFLDKRDHTPLFGVQGQPET 2054
GI EAY R+A ++EMRRKPG ++D ++ AA Q RF+D + G+ ET
Sbjct: 861 AASGIRDVEAYRARKACLIEMRRKPGAVYDEINPLAASQARFMDPMTQLLMPGM--TEET 918
Query: 2055 YWKDVPEMTTILLNICAAHRQEQDILQEQHIRK--HAVNDPLILASERFLKQESRKALCY 2228
W ++P++ T ++NI A HR QD LQ HA+ + LA + FL++ L
Sbjct: 919 SWMEMPDVVTEVINIAARHRAAQDKLQANFFAAYVHAMIQ-VALALQEFLRKGCPLLLSR 977
Query: 2229 MPRVEMEMHGVQSQAAGCYYLCVDQKLYTCTDDGNLVETHCEKPDYER-WEKNSSENFVG 2405
+P +E+E SQ ++ VD LY + + Y + WEK E F+
Sbjct: 978 LPDLEVEKGWYPSQRRKGFF--VDGVLYLQNAQFSFDSFPVKDCMYGKLWEKRMQEKFLP 1035
Query: 2406 GVQALDALECRSILVSGFLRNLVQGQCCVLSVDEMSTTATMAQQRLFKALQLQERVYLRL 2585
++A L+ RS++V+GFLR+LV G C +LSVD +S++AT QQR+F+ LQL+ERVYLR
Sbjct: 1036 AIKAGGVLDTRSMVVTGFLRSLVNGDCAILSVDSLSSSATACQQRIFQNLQLEERVYLRT 1095
Query: 2586 IQKKISPILSEAESNVYSKNAWMRCLEFAAASRDYLKEHGXXXXXXXXXXXXXXXXXYYF 2765
+Q ++ + + N YS +AW++ L A+ R+YL +G + F
Sbjct: 1096 LQVQMDKFMQDLPENPYSNSAWVKVLTAIASGREYLANNGCRILLVAAALLIVLVSAWGF 1155
Query: 2766 IGAFIGVXXXXXXXXXXXXXXKEVDMKAQYSSGAQDGRYRSRNIPIRQRYRYARGELDEE 2945
FIG+ +D+KAQ+SS QD YRSRNIP+ RY YAR + +
Sbjct: 1156 WKLFIGLFTGSMSLGAAIGGLGAIDIKAQHSSQGQDKGYRSRNIPVHHRYAYARSQAGDG 1215
Query: 2946 VPLGGQLAVALYGSQGRFISAMQYKGKSVMLTRHQMLMFAEKERVTCIYLATGESVVLTF 3125
+ +L VA+Y G F+SAMQYK KS+ +TRHQ L F E E++T ++ +TGES ++ +
Sbjct: 1216 LLPAARLCVAIYQPGGGFVSAMQYKNKSIRMTRHQALRFQEGEQLTLVFASTGESQMIRW 1275
Query: 3126 NRDDVQEFPNHETCLWQAAGMLQLPAKFKDCFLEKGETELAPAFELEGYVLRPDSTAFHY 3305
++ ++E P E D FLE ETEL F+ +G +
Sbjct: 1276 HKYHMREEPGSEIVTLACTKSSPSFLVICDLFLEDKETELPSHFQDDGLCVESCQNCISL 1335
Query: 3306 DHLKTWARV-QYEPFVVRGNLAREKYVNELPTSIWFQYQSRNNDCGMICLAQVGGKKKIV 3482
L T+ V +Y P ++G + + Y++E+P I F Y+SRN+DCGMI Q+ GK K+V
Sbjct: 1336 CTLDTYGAVNKYAPLPLKGVVNDDLYLHEIPEKIVFHYESRNDDCGMILTCQIKGKMKVV 1395
Query: 3483 GLLVAGVDQQTWADILPNPCMAEMKSQIEYEFKLGVHTEGYTKLGYLTKDKAPHLPKKNS 3662
G+LVAG D+ +W DILP +AE++SQIE+ K G GY K GY+ + AP +PKK +
Sbjct: 1396 GMLVAGKDKTSWGDILPANSLAELRSQIEHFPKFGEAENGYFKAGYVAPNLAPTMPKKTN 1455
Query: 3663 AVLVRPEYRIDSPVPIKEPSVISVEDPRCPKDSEGKPVDPIMKAFEKKFTTPMDLLEDDI 3842
V V E R+ VPIKEPS+IS +DPRCP VDP A +KKF+ PM LE ++
Sbjct: 1456 MVRVPEELRVPCDVPIKEPSIISPQDPRCPSG-----VDPPKAALKKKFSEPMAELEQEV 1510
Query: 3843 LESIAQEMIEEWHDCESEPLRDVPLEVAINGIPGTQIDDDDEFEDAVECFKMSTSPGYPY 4022
L+ +A E++E W+DCE L D+PL VAINGIP +E E +E F M TSPGYPY
Sbjct: 1511 LDEVATEILETWYDCEDHILEDIPLSVAINGIPA----GGEEAE--LENFVMKTSPGYPY 1564
Query: 4023 VLH-KEVGMKGKEAYFELAPDGTKSLKEGTLAAELYENIVQYSKSAIPELVVIECPKDEL 4199
K VG KGK YFE A DG+ LKEGT+A+EL+EN+V+++KS +PELVV+ECPKDEL
Sbjct: 1565 FREVKNVG-KGKHPYFEEAEDGSLKLKEGTMASELHENLVEFTKSEVPELVVVECPKDEL 1623
Query: 4200 LKTEKIKQGACRLFEIMPLHYNLFLREKTLAFSLFQQRNRHKLACQVGTKAYSHDWTHMY 4379
L KIK GACRLFEIMPLHYNLFLR+KT AF+ F Q NRH+L CQVGT AYS +W H+
Sbjct: 1624 LPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQHNRHRLPCQVGTNAYSREWGHLL 1683
Query: 4380 QRLV-AKSDRAINCDYSGFDGLLNSQVVRCIANMINSMYHSPEETIVSKRQRYNMINALF 4556
RL+ K+ AINCDYSGFDGLL Q+V IA MIN +Y E+ VS+ QRYNMI AL
Sbjct: 1684 SRLMRPKTTEAINCDYSGFDGLLTPQLVETIAKMINRLYALSGESEVSQAQRYNMIMALC 1743
Query: 4557 GRLAILVTGTDRDVMRVRAGLPSGFALTVVINSIFNEILMRYCFKVLVPGPQRNSFSTYV 4736
GR A++ D+ +V GLPSGF+LTVV+NS+FNEIL+RY ++ L P PQRN F V
Sbjct: 1744 GRYALV----GADLYKVNCGLPSGFSLTVVVNSVFNEILIRYAYRKLAPAPQRNLFGVNV 1799
Query: 4737 TLLVYGDDNLMSCTDKVATYFNGESIKATLKKKNVTITDGSDKTSPTIEWKAPGELDXXX 4916
LLVYGDDNL+SC ++++F GE+I+ L +K + ITDGSDK +PTIE K GELD
Sbjct: 1800 CLLVYGDDNLISCAPSISSWFTGEAIRICLAEKKIKITDGSDKDAPTIEPKPFGELDFLK 1859
Query: 4917 XXXXXXXTGVVQAPLDLSAIFSCLHWVTPHPQKMPKGGAQLQ-VDSVDTLYELALNVQVA 5093
G+VQAPLD SAIFS LHW+TP K + + + VD + EL LNV VA
Sbjct: 1860 RKFLKLDNGIVQAPLDRSAIFSSLHWLTPEKSKFHESQKPIDYLGDVDVVKELILNVNVA 1919
Query: 5094 LTELYLHDDKEEFQRVRNFYVKKMNILPTGYYTWADREAFHMSKQTGMEAYQPAKEIDID 5273
L ELYLH+D+ EF RVR FYVKK+ + TWA E+FH ++QTGM + PAK +D
Sbjct: 1920 LVELYLHNDRTEFDRVRGFYVKKLPTCVDQFRTWAFCESFHSAQQTGMLRHDPAKVLDYM 1979
Query: 5274 VGQEFARFMHTSDIGNQVHFYTPVLGVAGPFYKPTPDQLLVSTTPLKQGESGYWVPVETG 5453
VG +FARFM S+ GN+ HFY LGV GP YKP D+ LVST PL G SG ++PV+ G
Sbjct: 1980 VGPDFARFMRVSEQGNKAHFYCRDLGVCGPHYKPKDDEFLVSTVPL-NGRSGEYIPVKFG 2038
Query: 5454 MGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKSLVFRSEAPYVAGNAALMA 5633
G+G LPT WV F R +QL +A G+ + L +ESGK L+F S APYVAGNAA +
Sbjct: 2039 DGVGGLPTKKWVTDFGRSSQLKNAGGFLCRDLLVQVLESGKKLIFMSPAPYVAGNAAAIC 2098
Query: 5634 FGQSAGLLEIQTALNLYRNVIPESTNGLEQYFDAAIPQASLPGQFYFANAETEFLLQEHK 5813
FG S +L + AL YRN IPES +GLE+YFDA IP A++ G+ YFAN ET L + K
Sbjct: 2099 FGASVKMLNEKDALAHYRNSIPESVDGLERYFDAPIPAAAV-GKCYFANGETYAALCQFK 2157
Query: 5814 TGTIIGL 5834
++ +
Sbjct: 2158 EAEVLNI 2164
>ref|NP_734017.2| RNA-dependent RNA polymerase [Cycas necrotic stunt virus]
Length = 846
Score = 1377 bits (3565), Expect = 0.0
Identities = 677/763 (88%), Positives = 712/763 (93%)
Frame = +3
Query: 3558 SQIEYEFKLGVHTEGYTKLGYLTKDKAPHLPKKNSAVLVRPEYRIDSPVPIKEPSVISVE 3737
SQIEYEFKLG HTEGYTKLGYLTKDK PHLPKKN+AVLV+PEYRIDSPVPIKEPS+IS E
Sbjct: 1 SQIEYEFKLGAHTEGYTKLGYLTKDKTPHLPKKNNAVLVKPEYRIDSPVPIKEPSIISAE 60
Query: 3738 DPRCPKDSEGKPVDPIMKAFEKKFTTPMDLLEDDILESIAQEMIEEWHDCESEPLRDVPL 3917
DPRCPKD+EGKP+DPI+KAFEKKFTTPMDLLEDDILESIAQEM++EW DCESEPL DVPL
Sbjct: 61 DPRCPKDAEGKPIDPIVKAFEKKFTTPMDLLEDDILESIAQEMVDEWQDCESEPLCDVPL 120
Query: 3918 EVAINGIPGTQIDDDDEFEDAVECFKMSTSPGYPYVLHKEVGMKGKEAYFELAPDGTKSL 4097
EVAINGIPGTQIDDDDEFEDAVEC KM TSPGYPYVLHKE GMKGKEAYFELAPDGT++L
Sbjct: 121 EVAINGIPGTQIDDDDEFEDAVECLKMRTSPGYPYVLHKEPGMKGKEAYFELAPDGTRAL 180
Query: 4098 KEGTLAAELYENIVQYSKSAIPELVVIECPKDELLKTEKIKQGACRLFEIMPLHYNLFLR 4277
KEG+LAAELYENIVQYSKSAIPELVVIECPKDELLKTEK+ + ACR FEIMPLHYNLFLR
Sbjct: 181 KEGSLAAELYENIVQYSKSAIPELVVIECPKDELLKTEKVNK-ACRPFEIMPLHYNLFLR 239
Query: 4278 EKTLAFSLFQQRNRHKLACQVGTKAYSHDWTHMYQRLVAKSDRAINCDYSGFDGLLNSQV 4457
EKTLAFSLFQQRNRHKLACQVGTKAYSHDWTHMYQRLVAKSDRAINCDYS FDGLLNSQV
Sbjct: 240 EKTLAFSLFQQRNRHKLACQVGTKAYSHDWTHMYQRLVAKSDRAINCDYSSFDGLLNSQV 299
Query: 4458 VRCIANMINSMYHSPEETIVSKRQRYNMINALFGRLAILVTGTDRDVMRVRAGLPSGFAL 4637
V CIANMINSMYHSPEET+VSKRQRYNMINALFGRLAI T ++VMRVRAGLPSGFAL
Sbjct: 300 VSCIANMINSMYHSPEETVVSKRQRYNMINALFGRLAI----TGQEVMRVRAGLPSGFAL 355
Query: 4638 TVVINSIFNEILMRYCFKVLVPGPQRNSFSTYVTLLVYGDDNLMSCTDKVATYFNGESIK 4817
TVVINS+FNEILMRYCFKVLV GPQRNSFSTYVTLLVYGDDNLMSCTDK+A YFNGE+IK
Sbjct: 356 TVVINSVFNEILMRYCFKVLVLGPQRNSFSTYVTLLVYGDDNLMSCTDKIAIYFNGETIK 415
Query: 4818 ATLKKKNVTITDGSDKTSPTIEWKAPGELDXXXXXXXXXXTGVVQAPLDLSAIFSCLHWV 4997
TLKKKNVTITDGSDKT+P I+WK GELD TGVVQAPLDL+AIFSCLHWV
Sbjct: 416 ETLKKKNVTITDGSDKTAPDIKWKTLGELDFLKRRFLKLETGVVQAPLDLTAIFSCLHWV 475
Query: 4998 TPHPQKMPKGGAQLQVDSVDTLYELALNVQVALTELYLHDDKEEFQRVRNFYVKKMNILP 5177
TPHPQKMPKGGAQLQV++VDTLYELALNVQVALTELYLH +KEEFQRVRNFY KKMNILP
Sbjct: 476 TPHPQKMPKGGAQLQVENVDTLYELALNVQVALTELYLHGNKEEFQRVRNFYTKKMNILP 535
Query: 5178 TGYYTWADREAFHMSKQTGMEAYQPAKEIDIDVGQEFARFMHTSDIGNQVHFYTPVLGVA 5357
GYYTWADREAFHMSKQTGMEAYQPAKEID+DVGQEFARFMHTSDIGNQVHF L VA
Sbjct: 536 AGYYTWADREAFHMSKQTGMEAYQPAKEIDLDVGQEFARFMHTSDIGNQVHFTRQCLVVA 595
Query: 5358 GPFYKPTPDQLLVSTTPLKQGESGYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYK 5537
GPFYKPTPDQLLVSTTPLKQGESGYWVPVETGMG+G+LPTI+WVHRF RPTQLVDAYGYK
Sbjct: 596 GPFYKPTPDQLLVSTTPLKQGESGYWVPVETGMGIGNLPTIAWVHRFMRPTQLVDAYGYK 655
Query: 5538 IWETLRSHIESGKSLVFRSEAPYVAGNAALMAFGQSAGLLEIQTALNLYRNVIPESTNGL 5717
IW +RSHIESGKSLVFRSEAPYVAGNAALMAFGQ+A LLEI+TALNLYRNVIPEST GL
Sbjct: 656 IWGNVRSHIESGKSLVFRSEAPYVAGNAALMAFGQAAKLLEIKTALNLYRNVIPESTYGL 715
Query: 5718 EQYFDAAIPQASLPGQFYFANAETEFLLQEHKTGTIIGLMTDK 5846
EQYFDAAIPQASLPG FY ANAE+E LLQEHKTGT+IGL T+K
Sbjct: 716 EQYFDAAIPQASLPGTFYLANAESESLLQEHKTGTVIGLTTEK 758
>ref|NP_734014.2| NTP-binding domain [Cycas necrotic stunt virus]
Length = 694
Score = 1224 bits (3167), Expect = 0.0
Identities = 607/695 (87%), Positives = 628/695 (90%)
Frame = +3
Query: 762 AHMGLPLGGVITGVFTTAYMGWLFVKTPVGSELVMGLRLQVARIARNFFDCQRVGVPPDL 941
AHMGLPLGGVITGVFTTAYMGWLFVKTPVGSELVM LR+QVARIARN FD QR G+PPDL
Sbjct: 1 AHMGLPLGGVITGVFTTAYMGWLFVKTPVGSELVMNLRMQVARIARNIFDVQRTGIPPDL 60
Query: 942 PPNPNVGYSVPYEAFGGIGGQPFTMGPDAPNARAIPVVSPIINAMAGFGASMLSMKAMGL 1121
P NPNVG+SVPYEAFGGI QPF+MG D PNARAIPVVSPIINAMAGFGASMLSMKAMGL
Sbjct: 61 PANPNVGFSVPYEAFGGIDNQPFSMGADVPNARAIPVVSPIINAMAGFGASMLSMKAMGL 120
Query: 1122 IEMGKLGAACHSLRMGKDALCEFVSTVLYYFGRLADKVTGRETEFFDELSILVQIDVQDW 1301
IEMGKLGAACHSLRMGKDALCEFVSTVLYYFGRLADKVTGRETEFFDELSILVQIDV+DW
Sbjct: 121 IEMGKLGAACHSLRMGKDALCEFVSTVLYYFGRLADKVTGRETEFFDELSILVQIDVKDW 180
Query: 1302 IKRSRGVLLESCYTSLNNMILSDVVNKLVMDGERLQVTIAGTPRRLSLDFGQLVSSIMKD 1481
I RSRGVLL+SCYTSLNNMI SDVVNKLV DGE++ IAGTPRRLSLDFGQLVSSIMKD
Sbjct: 181 ITRSRGVLLDSCYTSLNNMICSDVVNKLVTDGEQIASNIAGTPRRLSLDFGQLVSSIMKD 240
Query: 1482 LLDLQQRIVRHGVTVGRRKEPTWIYIFGPSHCGKSNMMDHLTSEVCRYFDLPYTFIARNG 1661
LLDLQQRIVRHGVTVGRRKEPTWIYIFGPSHCGKSNMMDHLTSEVCRYFDLPYT+IARNG
Sbjct: 241 LLDLQQRIVRHGVTVGRRKEPTWIYIFGPSHCGKSNMMDHLTSEVCRYFDLPYTYIARNG 300
Query: 1662 QDNFFTTGYKRQSVLQIDDLSCVETTPPIEGELINLVACSEYPLKMADLSDKSISFQSPF 1841
QDNFFTTGYKRQ+VLQIDDLSCVE PPIE ELINLV+CSEYPLKMADLSDKSISFQSPF
Sbjct: 301 QDNFFTTGYKRQTVLQIDDLSCVENVPPIERELINLVSCSEYPLKMADLSDKSISFQSPF 360
Query: 1842 VISTSNQRTCLPTCGITHCEAYNNRRAVVVEMRRKPGVIFDPMDCHAAMQGRFLDKRDHT 2021
+ISTSNQRTCLPTCGITHCEA+NNRRAVVVEMRRKPGV+FDPMDCHAAMQGRFLDKRDHT
Sbjct: 361 IISTSNQRTCLPTCGITHCEAFNNRRAVVVEMRRKPGVVFDPMDCHAAMQGRFLDKRDHT 420
Query: 2022 PLFGVQGQPETYWKDVPEMTTILLNICAAHRQEQDILQEQHIRKHAVNDPLILASERFLK 2201
PLFGVQGQPET+WKDVPEMTTILLNIC AHRQEQDILQEQHIRKHAVNDPLILASERFLK
Sbjct: 421 PLFGVQGQPETFWKDVPEMTTILLNICVAHRQEQDILQEQHIRKHAVNDPLILASERFLK 480
Query: 2202 QESRKALCYMPRVEMEMHGVQSQAAGCYYLCVDQKLYTCTDDGNLVETHCEKPDYERWEK 2381
QESRKALCYMPRVEME+ GVQSQAAGCYYLCVDQKLYTC DDGNLVET C P Y +WE+
Sbjct: 481 QESRKALCYMPRVEMEICGVQSQAAGCYYLCVDQKLYTCEDDGNLVETPCLNPSYAQWER 540
Query: 2382 NSSENFVGGVQALDALECRSILVSGFLRNLVQGQCCVLSVDEMSTTATMAQQRLFKALQL 2561
NSSENFVGGVQALDALECRSILVSG LRNLVQGQCCVLS+DEMS + QRLFKALQL
Sbjct: 541 NSSENFVGGVQALDALECRSILVSGILRNLVQGQCCVLSIDEMS-RLPLCTQRLFKALQL 599
Query: 2562 QERVYLRLIQKKISPILSEAESNVYSKNAWMRCLEFAAASRDYLKEHGXXXXXXXXXXXX 2741
QERVYLRLIQKKIS ILS ESNVYSKNAWMRCLEFAAASRDYLKEHG
Sbjct: 600 QERVYLRLIQKKISHILSVDESNVYSKNAWMRCLEFAAASRDYLKEHGLEVLLLLAAMMI 659
Query: 2742 XXXXXYYFIGAFIGVXXXXXXXXXXXXXXKEVDMK 2846
YYF+GAFIGV KEVDMK
Sbjct: 660 LCVALYYFVGAFIGVMGGALSMGAAMAGLKEVDMK 694
>dbj|BAJ16223.1| polyprotein [Melon mild mottle virus]
Length = 2314
Score = 776 bits (2003), Expect = 0.0
Identities = 557/1769 (31%), Positives = 852/1769 (48%), Gaps = 31/1769 (1%)
Frame = +3
Query: 516 EGFSHRVVDAVMSRVNAAIAQFAAQLDIARTIVDQLVVHVKRWYTSLCTSFDDSLKLLGK 695
E V+ + S + F L + K W + + D+L L +
Sbjct: 465 EKIEDMVISTMQSVFEKTMTPFLGHLTSCAELFRTFWDKCKAWIQKIRENLSDALLALQE 524
Query: 696 WAGYALGLIVGVGVCHLVEVICAHMG-LPLGGVITGVFTTAYMGWL-FVKTPVGSELVMG 869
A +AL +++ G+ L E I +G L G + G+F T ++ L F +G++ +
Sbjct: 525 HALWALVVMMAGGIVVLAETILMKLGVLERVGNVLGLFLTLFLTSLGFSAISLGADKFIA 584
Query: 870 LRLQVARIARNFFDCQRVGVPPDLPPNPNVGYSVPYEAFGGIGGQPFTMGPDAPNARAIP 1049
L PP+L +EA +GG
Sbjct: 585 LNNSFKMAVCTMLK------PPELDSIVPGDVQNEFEARSLVGG---------------- 622
Query: 1050 VVSPIINAMAGFGASMLSMKAMGLIEMGKLGAACHSLRMGKDALCEFVSTVLYYFGRLAD 1229
+ I+A++ G S+ S+K L+ GK+G+A L GK A+ E S ++ G +AD
Sbjct: 623 -LDVAISALSTVGRSLCSLKFGTLMYWGKIGSAFDQLWRGKKAVEELGSWLVEIIGNIAD 681
Query: 1230 KVTGRETEFFDELSILVQIDVQDWIKRSRGVLLESCYTSLNNMILSDVVNKLVMDGERLQ 1409
+TGR EFFDEL+ V D + W+KR+ V L+ L+ ++ + V L+ +G+ L
Sbjct: 682 TLTGRHIEFFDELAATVGGDPKLWLKRAHDVKLQCQTMDLSGRMVLETVENLLAEGQNLL 741
Query: 1410 VTIAGTPRRLSLDFGQLVSSIMKDLLDLQQRIVRHGVTVGRRKEPTWIYIFGPSHCGKSN 1589
V I+G PRR S DFG ++ +++L++L+ R + G G R P W+Y+FG S GK+N
Sbjct: 742 VGISGVPRRTSTDFGMIIKKQVEELIELRSRCAKAGKFEGTRVFPFWVYVFGASQSGKTN 801
Query: 1590 MMDHLTS-EVCRYFDLPYTFIARNGQDNFFTTGYKRQSVLQIDDLSCVETTPPIEGELIN 1766
+ + + E+ +LP I G+ + F +GY RQS + IDD+ V+ P IE ++I+
Sbjct: 802 FANSMVAPELLAEMNLPRDSIFTKGKSDAFWSGYCRQSCIMIDDMFAVKVEPSIESQMID 861
Query: 1767 LVACSEYPLKMADLSDKSISFQSPFVISTSNQRTCLPTCGITHCEAYNNRRAVVVEMRRK 1946
+V +PL MA + DK + SP V++T N+ G+ ++ NRR VVVE RR
Sbjct: 862 VVNSQAFPLNMAYIEDKGMLMDSPIVVTTCNEEKLPSDSGVRDEPSFYNRRGVVVECRRV 921
Query: 1947 PGVIFDPMDCHAAMQGRFLDKRDHTPLFG-VQGQPETYWKDVPEMTTILLNICAAHRQEQ 2123
G ++P + A + R L + +G P T W E ++ H ++
Sbjct: 922 EGSKYNPGNLEACAEVRLLQPKHQAKATDPARGAPLTDWMTPSEAMAVIKTKMGEHMGDE 981
Query: 2124 DILQEQHIRKHAVNDPLILASERFLKQ---------ESRKALCYMPRVEMEMHGVQSQAA 2276
I + + P+ ++ FLK ES C + M+ G + +
Sbjct: 982 MIRINTFRSQRGIRHPIFEFAKDFLKDLDLIGHPLSESEIEEC---NIRMKEGGERPR-- 1036
Query: 2277 GCYYLCVDQKLYTCTDDGNLVETHCEKPDYERWEKNSSENFVGGVQALDALECRSILVSG 2456
G +L +D++L+ LVE +K E + +N + A + ++ V
Sbjct: 1037 GFSFLALDRQLFVYNALHRLVECTFDKMPLHL-EGITLDNVYNDIHVRLARDPKNGFVGS 1095
Query: 2457 FLRNLVQGQCCVLSVDEMSTTATMAQQRLFKALQLQERVYLRLIQKKISPILSEAESNVY 2636
FL +V Q ++SVD+M+T + QQ F +L L ERVYLRL Q KI I EA ++
Sbjct: 1096 FLHEMVNLQHNIISVDKMTTKCSAEQQTFFHSLPLTERVYLRLSQLKIDTIHREAGASP- 1154
Query: 2637 SKNAWMRCLEFAAASRDYLKEHGXXXXXXXXXXXXXXXXXYYFIGAFIGVXXXXXXXXXX 2816
+ A+ + + + + ++G Y
Sbjct: 1155 GEFAYQKLMRAMKKTYAAVADNGRSIFLLLAAVVCIVISFYGLFSILASCFGGASVASAA 1214
Query: 2817 XXXXKEVDMKAQYSSGAQDGRYR--SRNIPIRQRYRYARGELDEEVPLGGQLAVALY-GS 2987
K M SS A R +R +P++QR AR EEVP L V ++ G
Sbjct: 1215 IAMNKVDAMNGLNSSSASGPSVRRPNRYMPVQQRTVLARSMEGEEVPEWHSLIVEIHSGH 1274
Query: 2988 QGRFISAMQYKGKSVMLTRHQMLMFAEKERVTCIYLATGESVVLTFNRDDVQEFPNHETC 3167
+FISA QY G+S+++TRHQ L + V Y + +N D++ EF + E
Sbjct: 1275 ASQFISACQYFGRSLLMTRHQALDLKRGQEVVIAY-DKSYPLYHVWNPDNIVEFDDSELV 1333
Query: 3168 LWQAAGMLQLP-AKFKDCFLEKGETELAPAFELE--GYVLRPDSTAFHYDHLKTWARVQY 3338
++ + + L A+ K FLE E +L F G L D T + + +
Sbjct: 1334 VYTSGDLQVLSNARKKRFFLEDFEADLPSKFRAHCAGVRLASDGTPKTNEWKSDASVLTE 1393
Query: 3339 EPFVVRGNLAREKYVNELPTSIWFQYQSRNNDCGMICLAQVGGKKKIVGLLVAGVDQQTW 3518
+ +VR + Y ++P + + ++++++DCG +C+A V + K+ LLV D +T
Sbjct: 1394 KATIVRYQGKQCVYQRQIPKYVVYPFEAKDHDCGALCMAFVNKQWKVTSLLVGYADGRTT 1453
Query: 3519 ADILPNPCMAEMKSQIEYEFKLGVHTEGYTKLGYLTKDKAPHLPKKNSAVLVRPEYRIDS 3698
+LP E KS + Y ++ GY K+G+L D+ PHLPKK+ V V +Y+ +
Sbjct: 1454 CSLLPAWQPMEAKSVLSYNEEIVEIAPGYCKVGWLPVDQTPHLPKKSQFVEVPLKYQPKN 1513
Query: 3699 PVPIKEPSVISVEDPRCPK------DSEGKP-----VDPIMKAFEKKFTTPMDLLEDDIL 3845
V +K P+++S +D R PK EG P DP++ EK F PM+ +++ +L
Sbjct: 1514 -VEVKHPAILSKDDERLPKILADLEKKEGLPKGSMSYDPLINGLEK-FAEPMEAVDEGLL 1571
Query: 3846 ESIAQEMIEEWHDCESEPLRDVPLEVAINGIPGTQIDDDDEFEDAVECFKMSTSPGYPYV 4025
+A E++EEW DC L DV L+VAING G E E + MSTS GYP+
Sbjct: 1572 RHVADEIVEEWFDCLEGSLSDVSLDVAINGADG-------EAEKFFDPLVMSTSEGYPFT 1624
Query: 4026 LHKEVGMKGKEAYFELAPDGTKSLKEGTLAAELYENIVQYSKSAIPELVVIECPKDELLK 4205
L + G GK +FE P G ++L T Y + +Y IPELV +ECPKDE L
Sbjct: 1625 LTRTGGETGKARFFEGLP-GERTLLPNTPVEIAYRELCEYE--GIPELVCVECPKDECLV 1681
Query: 4206 TEKIKQGACRLFEIMPLHYNLFLREKTLAFSLFQQRNRHKLACQVGTKAYSHDWTHMYQR 4385
KI + RLF I+PLHYNL LR+K L+FS F RNRH+L CQVG YS +W +Y R
Sbjct: 1682 ERKILKPKTRLFSILPLHYNLRLRQKFLSFSAFLMRNRHRLPCQVGINVYSREWLDIYTR 1741
Query: 4386 LVAKSDRAINCDYSGFDGLLNSQVVRCIANMINSMYHSPEETIVSKRQRYNMINALFGRL 4565
L +D A NCDY FDGL+ Q + I +MIN Y E +S QR N++ AL+ R
Sbjct: 1742 LAQVNDVACNCDYQSFDGLMTYQFLNVIGDMINRCYRDDSEKSLS--QRKNLLLALYQRK 1799
Query: 4566 AILVTGTDRDVMRVRAGLPSGFALTVVINSIFNEILMRYCFKVLVPGPQRNSFSTYVTLL 4745
+I V +RAG+PSG ALTV++NS+FNE+L+R ++ LVPG R+ FS V LL
Sbjct: 1800 SI----AGNQVYSLRAGIPSGCALTVLLNSLFNELLVRIAYRSLVPGVNRDRFSKCVCLL 1855
Query: 4746 VYGDDNLMSCTDKVATYFNGESIKATLKKKNVTITDGSDKTSPTIEWKAPGELDXXXXXX 4925
VYGDDNL++C+ V FNG ++K L + VTITDG DKT+PTIE + ELD
Sbjct: 1856 VYGDDNLIACSQSVIKDFNGNALKDWLAQYKVTITDGKDKTAPTIEERPLLELDFLKRGF 1915
Query: 4926 XXXXTGVVQAPLDLSAIFSCLHWVTPHPQKMPKGGAQLQVDSVDTLYELALNVQVALTEL 5105
G V APLD +I+S L V +D V L++ N Q L EL
Sbjct: 1916 KLAVGGRVLAPLDKKSIYSSLVHVRAK-----------DLDWVPLLFD---NYQNCLREL 1961
Query: 5106 YLHDDKEEFQRVRNFYVKKMNILPTGYYTWADREAFHMSKQTGMEAYQPAKEIDIDVGQE 5285
+HDD+EEF+ +R +Y TW + +++H ++ TG +D+ + +
Sbjct: 1962 VMHDDREEFEALRKYYETLFPSWKGSSLTWNEVQSWHTAQLTGNSGLSYNDRMDVLINPQ 2021
Query: 5286 FARFMHTSDIGNQVHFYTPVLGVAGP-FYKPTPDQLLVSTTPLKQGESGYWVPVETGMGM 5462
F+ FM + ++ +AGP + D +VST PL +GE G VP+ G G+
Sbjct: 2022 FSTFMQQHGPADVINSVDNNFSIAGPKWCDRGGDYFVVSTFPLFRGEVGIHVPIVPGGGI 2081
Query: 5463 GSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKSLVFRSEAPYVAGNAALMAFGQ 5642
G +PT +WV + + Y KI E I K +VFR PY+ AL++F
Sbjct: 2082 GCMPTNNWVRNWASGS---CEYSQKISEA----ISDKKHVVFRDNQPYIGAWTALISFCS 2134
Query: 5643 SAGLLEIQTALNLYRNVIPESTNGLEQYF 5729
G ++ ++ LYRN+ P+ L +F
Sbjct: 2135 GFGFRTVEESMILYRNICPKDPIHLSTFF 2163
>ref|NP_734035.1| RNA-dependent RNA polymerase [Beet ringspot virus]
Length = 824
Score = 765 bits (1976), Expect = 0.0
Identities = 410/760 (53%), Positives = 510/760 (67%), Gaps = 3/760 (0%)
Frame = +3
Query: 3558 SQIEYEFKLGVHTEGYTKLGYLTKDKAPHLPKKNSAVLVRPEYRIDSPVPIKEPSVISVE 3737
SQIEY K G +G+ K GY+ AP LPKK + V V R+ VPIKEP+V++
Sbjct: 1 SQIEYIPKFGEAYDGFFKAGYVPMADAPTLPKKTNMVPVPQSLRVPCDVPIKEPAVLTNA 60
Query: 3738 DPRCPKDSEGKPVDPIMKAFEKKFTTPMDLLEDDILESIAQEMIEEWHDCESEPLRDVPL 3917
D RCP V+P + A +KKF PM LE +IL+ +A +++E W+DCE L D+PL
Sbjct: 61 DKRCPAG-----VNPPVTALKKKFEHPMKELEQEILDEVATDILETWYDCEDHVLNDIPL 115
Query: 3918 EVAINGIPGTQIDDDDEFEDAVECFKMSTSPGYPYVLHKEVG-MKGKEAYFELAPDGTKS 4094
VAINGIP D E +E F M TSPGYPY + +KGK AYFE A DGT
Sbjct: 116 VVAINGIPA------DSEEAELENFVMKTSPGYPYFKNNRAEKLKGKSAYFEEAEDGTLK 169
Query: 4095 LKEGTLAAELYENIVQYSKSAIPELVVIECPKDELLKTEKIKQGACRLFEIMPLHYNLFL 4274
LKEG +AA+L+EN+V+++K+ +PELVVIEC KDELL KIK GACRLFEIMPLHYNLFL
Sbjct: 170 LKEGGMAAKLHENLVEFTKNEVPELVVIECTKDELLPERKIKVGACRLFEIMPLHYNLFL 229
Query: 4275 REKTLAFSLFQQRNRHKLACQVGTKAYSHDWTHMYQRLVA-KSDRAINCDYSGFDGLLNS 4451
R+KT AF+ F Q NRH L CQVGT YS +W HM RL+ K++ AINCDYSGFDGLLN+
Sbjct: 230 RQKTCAFTQFLQHNRHVLPCQVGTNPYSREWGHMLNRLMRPKTNEAINCDYSGFDGLLNA 289
Query: 4452 QVVRCIANMINSMYHSPEETIVSKRQRYNMINALFGRLAILVTGTDRDVMRVRAGLPSGF 4631
QV+ CIA MIN +Y E+ V + QRYNM+ AL GR A + +V +V GLPSGF
Sbjct: 290 QVIECIAKMINRLYALSGESEVQQAQRYNMLMALVGRYAFV----GPEVYKVNCGLPSGF 345
Query: 4632 ALTVVINSIFNEILMRYCFKVLVPGPQRNSFSTYVTLLVYGDDNLMSCTDKVATYFNGES 4811
ALTVV+NS+FNEIL+RY +K L P P+RN F+ V LLVYGDDNL+S + +A++F GE+
Sbjct: 346 ALTVVVNSVFNEILIRYAYKKLAPKPERNRFNQVVCLLVYGDDNLISVSPSIASWFTGEA 405
Query: 4812 IKATLKKKNVTITDGSDKTSPTIEWKAPGELDXXXXXXXXXXTGVVQAPLDLSAIFSCLH 4991
I+ TL +K V ITDGSDK +PTIE K+ ELD G+VQAPLD SAIFS L+
Sbjct: 406 IRITLAEKKVKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLY 465
Query: 4992 WVTPHPQKMPKGGAQLQVD-SVDTLYELALNVQVALTELYLHDDKEEFQRVRNFYVKKMN 5168
W+TP K +VD + EL LNV VAL ELYLH+D EF RVR+FY+K +
Sbjct: 466 WLTPDKSKFHASQRASDFQGTVDVVEELILNVNVALMELYLHNDPREFSRVRDFYIKALP 525
Query: 5169 ILPTGYYTWADREAFHMSKQTGMEAYQPAKEIDIDVGQEFARFMHTSDIGNQVHFYTPVL 5348
+ + TWA EAFH ++QTGM Y PAK +D G +F +FMH S+ GN+ HFYT +L
Sbjct: 526 LATGQFRTWAFCEAFHSAQQTGMLKYDPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTEML 585
Query: 5349 GVAGPFYKPTPDQLLVSTTPLKQGESGYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAY 5528
GVAGP YKP + +VST PLK G G VP++ G G+G LPT WV F RP+QL +
Sbjct: 586 GVAGPHYKPQENDFIVSTEPLKMGVCGEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKL 645
Query: 5529 GYKIWETLRSHIESGKSLVFRSEAPYVAGNAALMAFGQSAGLLEIQTALNLYRNVIPEST 5708
GY I LR+ IE+GK LVF S APYVA NAAL+AFG +L + AL YRNVIPEST
Sbjct: 646 GYLIHPILRAQIEAGKRLVFMSPAPYVANNAALIAFGTGGKMLIQKDALVHYRNVIPEST 705
Query: 5709 NGLEQYFDAAIPQASLPGQFYFANAETEFLLQEHKTGTII 5828
+GLEQYFDA +P A++ G FYFAN ET L E+K G ++
Sbjct: 706 SGLEQYFDAPLPTATI-GTFYFANGETYAALCEYKEGKVL 744
>ref|NP_958841.1| Pol [Tomato black ring virus]
Length = 824
Score = 764 bits (1972), Expect = 0.0
Identities = 404/760 (53%), Positives = 512/760 (67%), Gaps = 3/760 (0%)
Frame = +3
Query: 3558 SQIEYEFKLGVHTEGYTKLGYLTKDKAPHLPKKNSAVLVRPEYRIDSPVPIKEPSVISVE 3737
SQI+Y + G +GY K GY+ K +AP LPKK + V V R+ VP+KEP+V++ +
Sbjct: 1 SQIDYIPEFGEACDGYFKAGYVHKSEAPTLPKKTNMVPVPESLRVPCDVPVKEPAVLTKD 60
Query: 3738 DPRCPKDSEGKPVDPIMKAFEKKFTTPMDLLEDDILESIAQEMIEEWHDCESEPLRDVPL 3917
DPRCP VDP A +KKFT PM LE +IL+ +A +++E W+DCE L D+ L
Sbjct: 61 DPRCPIG-----VDPPRAALKKKFTQPMMELEQEILDEVATDILETWYDCEDHVLSDISL 115
Query: 3918 EVAINGIPGTQIDDDDEFEDAVECFKMSTSPGYPYVLHKEVG-MKGKEAYFELAPDGTKS 4094
VAINGIP D E +E F M TSPGYPY + +KGK AYFE A DG+
Sbjct: 116 SVAINGIPA------DSEEAELENFVMKTSPGYPYFKNNRAEKLKGKHAYFEEAEDGSLQ 169
Query: 4095 LKEGTLAAELYENIVQYSKSAIPELVVIECPKDELLKTEKIKQGACRLFEIMPLHYNLFL 4274
LK+G +AAEL+EN+V+++K+ +PELVVIEC KDELL KIK GACRLFEIMPLHYNLFL
Sbjct: 170 LKKGGMAAELHENLVEFTKNEVPELVVIECTKDELLPERKIKVGACRLFEIMPLHYNLFL 229
Query: 4275 REKTLAFSLFQQRNRHKLACQVGTKAYSHDWTHMYQRLVA-KSDRAINCDYSGFDGLLNS 4451
R+KT AF+ F Q NRH+L CQVGT YS +W HM RL+ K++ AINCDYSGFDGLLN
Sbjct: 230 RQKTCAFTQFLQHNRHRLPCQVGTNPYSREWGHMLNRLMRPKTNEAINCDYSGFDGLLNP 289
Query: 4452 QVVRCIANMINSMYHSPEETIVSKRQRYNMINALFGRLAILVTGTDRDVMRVRAGLPSGF 4631
Q++ CIA MIN +Y E+ V + QRYNM+ AL GR A + + V +V GLPSGF
Sbjct: 290 QLIECIARMINRLYALSGESDVQQAQRYNMLMALVGRYAFV----GQQVYKVNCGLPSGF 345
Query: 4632 ALTVVINSIFNEILMRYCFKVLVPGPQRNSFSTYVTLLVYGDDNLMSCTDKVATYFNGES 4811
ALTVV+NS+FNEIL+RY +K L P P+RN F + V LLVYGDDNL+S + +A++F GE+
Sbjct: 346 ALTVVVNSVFNEILIRYAYKKLAPAPERNRFGSTVCLLVYGDDNLISVSPSIASWFTGEA 405
Query: 4812 IKATLKKKNVTITDGSDKTSPTIEWKAPGELDXXXXXXXXXXTGVVQAPLDLSAIFSCLH 4991
I+ TL +K V ITDGSDK +PTIE K+ ELD G+VQAPLD SAIFS L+
Sbjct: 406 IRITLAEKKVKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLY 465
Query: 4992 WVTPHPQKMPKGGAQLQVDS-VDTLYELALNVQVALTELYLHDDKEEFQRVRNFYVKKMN 5168
W+TP K + VD + EL LNV VAL ELYLH+D EFQRVR FY +++
Sbjct: 466 WLTPDKSKFHESQKPSDFQGEVDVIEELLLNVNVALMELYLHNDVAEFQRVRGFYAQRLP 525
Query: 5169 ILPTGYYTWADREAFHMSKQTGMEAYQPAKEIDIDVGQEFARFMHTSDIGNQVHFYTPVL 5348
++ + TWA EAFH ++QTGM+ Y PA +D G +F RFMH S+ GN+ HFYT +L
Sbjct: 526 LMVSQLRTWAFCEAFHSAQQTGMQKYDPAVVLDHMSGVDFKRFMHMSEQGNKAHFYTEML 585
Query: 5349 GVAGPFYKPTPDQLLVSTTPLKQGESGYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAY 5528
GV+GP YKP +VS PLK G G +VP+ G G+G LPT WV F +P+QL ++
Sbjct: 586 GVSGPHYKPQEGDFIVSNQPLKPGVQGEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSK 645
Query: 5529 GYKIWETLRSHIESGKSLVFRSEAPYVAGNAALMAFGQSAGLLEIQTALNLYRNVIPEST 5708
GY I LR IE+GK L+F APYVA NAAL++FG + +L + AL YRNVIPEST
Sbjct: 646 GYLITGLLREQIEAGKRLIFMGPAPYVANNAALISFGSAHKMLIQKDALAHYRNVIPEST 705
Query: 5709 NGLEQYFDAAIPQASLPGQFYFANAETEFLLQEHKTGTII 5828
+GLEQYFDA IPQAS+ G FYF + ET L E+K G ++
Sbjct: 706 SGLEQYFDAPIPQASV-GTFYFGDGETYTALCEYKDGKVL 744
>gb|ADJ39329.1| polyprotein P1-I [Arabis mosaic virus]
Length = 2285
Score = 755 bits (1950), Expect = 0.0
Identities = 574/1851 (31%), Positives = 888/1851 (47%), Gaps = 38/1851 (2%)
Frame = +3
Query: 291 LLAEELEKISDEENCKDAEREINLKYLEI-SQATENMRAGGLFDKIKGKAQDLWTSVVDF 467
+L+ +E ++ E++ KDA N++ EI + +T R +K A+ + + V DF
Sbjct: 382 ILSASIEVLACEQDFKDAIELFNIELAEIPTDSTTCGRFNEWASSVKTMAKGVGSLVGDF 441
Query: 468 ASHPFRRYLATTAEFVEGFSHRVVDAVMSRVNAAIAQFAAQLDIARTIVDQLVVHVKRWY 647
A L T + +E + + NA + + + L A I+ ++ + W
Sbjct: 442 ARGAGTLTLITFDKAIEYLQEKALTLCQKVFNATMVPYLSHLAEASDIIKKIWKKLSEWM 501
Query: 648 TSLCTSFDDSLKLLGKWAGYALGLIVGVGVCHLVE-VICAHMGLPLGGVITGVFTTAYMG 824
SL +L++L A +ALG IV GV LVE V+ A +P G++ G F T +
Sbjct: 502 ESLKGKAGLALEVLAHHAIFALGAIVVGGVVVLVEKVLVACKVIPTCGIVLGAFLTLFFA 561
Query: 825 WLFVKTPVGSELVMGLRLQVARIARNFFDCQRVGVPPDLPPNPNVGYSVPYEAFGGIGGQ 1004
L + L I + C+ G + YSV G G
Sbjct: 562 SLGLTA---------LECTADEIFKMHQCCK--GAIYSM-------YSVKEPVCEGEG-- 601
Query: 1005 PFTMGPDAPNARAIPVVSPIINAMAGFGASMLSMKAMGLIEMGKLGAACHSLRMGKDALC 1184
D+ + + I+A+ G SM+S K K+ L GK A+
Sbjct: 602 ------DSTTKGVLQGLDNAISALTRVGQSMISFKLGSFSYYAKIAQGFDQLARGKRAIG 655
Query: 1185 EFVSTVLYYFGRLADKVTGRETEFFDELSILVQIDVQDWIKRSRGVLLESCYTSLNNMIL 1364
E S ++ G + KV+G+E+ FFDELS +V +DV+ W+ +S+ V L+ ++ + I
Sbjct: 656 ELTSWLIDLVGSVYSKVSGQESTFFDELSTIVCLDVRSWLLKSKRVRLQVETMAIGDRIT 715
Query: 1365 SDVVNKLVMDGERLQVTIAGTPRRLSLDFGQLVSSIMKDLLDLQQRIVRHGVTVGRRKEP 1544
D ++KL+ +G ++ VT AG PR+ S DF + + L ++ QR G+ G R+ P
Sbjct: 716 LDTISKLLEEGHKILVTAAGVPRKTSADFTMCIKEEVSKLEEVHQRTACAGINEGMRQFP 775
Query: 1545 TWIYIFGPSHCGKSNMMDH-LTSEVCRYFDLPYTFIARNGQDNFFTTGYKRQSVLQIDDL 1721
W+YIFG S GK+ + + + + +LP T + + F +GY RQ+ +++DD
Sbjct: 776 FWVYIFGASQSGKTTIANSVIIPSLLEEMNLPKTSVYSRPKTGGFWSGYARQACVKVDDF 835
Query: 1722 SCVETTPPIEGELINLVACSEYPLKMADLSDKSISFQSPFVISTSNQRTCLPTCGITHCE 1901
+E TP + +I++V YPL MA L +K +S SP V++T+N GIT
Sbjct: 836 YAIEQTPSLASSMIDVVNSEPYPLDMAYLHEKGMSMDSPLVVTTANTVKPPTNAGITDEA 895
Query: 1902 AYNNRRAVVVEMRRKPGVIFDPMDCHAAMQGRFL-DKRDHTPLFGVQGQP------ETYW 2060
++ NRRA V+E+RRK F P ++ RFL +K + GV P E W
Sbjct: 896 SFFNRRAAVIEVRRKDNTHFTPRAYDNCIEVRFLHNKCAYVDSGGVPQGPAVNTPMEEGW 955
Query: 2061 KDVPEMTTILLNICAAH--RQEQDILQEQHIRKHAVND-PLILASERFLKQESRKALCYM 2231
E L N+ H +E+ +L R+ ND P+ A++ F+ ++
Sbjct: 956 VSPSEAVATLKNLLGEHVLAEEEKLLD---YRERIGNDHPIYNAAQEFIGNMHYPGQ-WL 1011
Query: 2232 PRVEMEMHGVQSQAAGCYYLCVDQKLYTCTDDGNL--VETHCEKPDYERWEKNSSENFVG 2405
+ +G+ + G +L VD K+Y G L ET P+ W + + V
Sbjct: 1012 TTEQKNTYGINEE--GFSFLAVDGKMYKYNVLGKLNPCETTPPHPNVIPWLEEKTLTVVH 1069
Query: 2406 -GVQALDALECRSILVSGFLRNLVQGQCCVLSVDEMSTTATMAQQRLFKALQLQERVYLR 2582
V A R+ LVS FL+ LVQ Q V SV+ M ++ QQ FK L L ER+YLR
Sbjct: 1070 WDVHKHIATGPRNALVSCFLQGLVQDQSRVQSVELMGKDSSPEQQAFFKRLSLSERIYLR 1129
Query: 2583 LIQKKISPILSEAESNVYSKNAWMRCLEFAAASRDYLKEHGXXXXXXXXXXXXXXXXXYY 2762
L Q +I + E S+ + A S+ L E+ Y
Sbjct: 1130 LCQIRIDAVKKEQLGGP-SRGTLDVLRDCMAKSKAKLCEN-YSLLLTLVAVLVLIATAYS 1187
Query: 2763 FIGAFIGVXXXXXXXXXXXXXXKEVDMKAQYSSGAQDGRYRSRNIPIRQRYRYARGELDE 2942
I +G+ + + S + RY +RN + R ARG+
Sbjct: 1188 LISTLVGLAGCTSFAGGIVAMKQVSNASIPCSEPRLEERYSARNRFV-SRISRARGD--- 1243
Query: 2943 EVPLGGQ-----LAVALY---GSQGRFISAMQYKGKSVMLTRHQMLMFAEKERVTCIYL- 3095
P GQ L LY R IS +KG+S+++TRHQ L V IY
Sbjct: 1244 -GPAKGQGEHEELVTELYYYFDGVKRLISCCWFKGRSLLMTRHQALAIPIGNEVQVIYAD 1302
Query: 3096 ATGESVVLTFNRDDVQ-----EFPNHETCLWQAAGMLQLPAKFKDCFLEKGETELAPAFE 3260
T +V ++D EFP +E +++ A +L +P K++ F++ + +++P
Sbjct: 1303 GTDRKLVWPGKQEDGSCKGYIEFPENELVVFEHARLLTMPVKYEKYFVDDPDRQISPNVA 1362
Query: 3261 LEGYVLRPDS--TAFHYDHLKTWARVQYEPFVVRGNLAREKYVNELPTSIWFQYQSRNND 3434
++ V R + FH+ + AR V G A Y N++ I + ++++ ND
Sbjct: 1363 VKCCVARLEEGLPQFHFWNKYASARSDVHTVVDEGGSA--VYQNKIRRHIIYAHEAKRND 1420
Query: 3435 CGMICLAQVGGKKKIVGLLVAGVDQQTWADILPNPCMAEMKSQIEYEFKLGVHTEGYTKL 3614
CG I +A++ K++ +LV+G +++ ++PN + ++ + Y + G+ T GY K+
Sbjct: 1421 CGAIAVAEIQRVPKVIAMLVSGAGNVSYSSVIPNYSSSFVRGDVPYVPEDGIKTNGYRKV 1480
Query: 3615 GYLTKDKAPHLPKKNSAVLVRPEYRIDSPVPIKEPSVISVEDPRCPKDSEGKPVDPIMKA 3794
GYL + APH+P K + + V E P P K+P+++S ED R K + + PI
Sbjct: 1481 GYLMRKDAPHVPSKTAFMKVPDEICFPYPNP-KQPAILSAEDERL-KGTVHEGYTPIRDG 1538
Query: 3795 FEKKFTTPMDLLEDDILESIAQEMIEEWHDCESEPLRDVPLEVAINGIPGTQIDDDDEFE 3974
KKF PM LL++ +L+ +A +M+ W D E L DVPL +AING D D+E+
Sbjct: 1539 M-KKFAEPMHLLDEKLLDEVAGDMVHTWFDV-GEFLEDVPLNIAING------DVDEEYF 1590
Query: 3975 DAVECFKMSTSPGYPYVLHKEVGMKGKEAYFELAPDGTKSLKEGTLAAELYENIVQYSKS 4154
D + M TS GYP VL ++ G KGK +F P G + G Y ++ + K+
Sbjct: 1591 DPMA---MDTSEGYPEVLQRKAGEKGKARFFVGEP-GAREFVPGCGPERAYLSLEEECKT 1646
Query: 4155 AIPELVVIECPKDELLKTEKIKQGACRLFEIMPLHYNLFLREKTLAFSLFQQRNRHKLAC 4334
+P L+ IE PKDE LK KI+ RLF ++PL YNL LR K L+FS + R L C
Sbjct: 1647 RVPSLISIETPKDERLKRSKIETPGTRLFSVLPLAYNLLLRVKFLSFSRLLMKKRSHLPC 1706
Query: 4335 QVGTKAYSHDWTHMYQRLVAKSDRAINCDYSGFDGLLNSQVVRCIANMINSMYHSPEETI 4514
QVG YS +WT +Y RL SD NCDY GFDGL+ Q++ +A MIN+ Y +P
Sbjct: 1707 QVGINPYSREWTDLYHRLAEMSDVGYNCDYKGFDGLITEQILAVVATMINAGYQNP---- 1762
Query: 4515 VSKRQRYNMINALFGRLAILVTGTDRDVMRVRAGLPSGFALTVVINSIFNEILMRYCFKV 4694
V+ +QR N++ A+ GRL+I V AG+PSG ALTVVINSIFNE+LMRYCFK
Sbjct: 1763 VANQQRSNLLLAISGRLSI----CGNQVYETEAGIPSGCALTVVINSIFNELLMRYCFKK 1818
Query: 4695 LVPGPQRNSFSTYVTLLVYGDDNLMSCTDKVATYFNGESIKATLKKKNVTITDGSDKTSP 4874
+VP R F V L+ YGDDN+ + + + F G+++KA + VTITDG DK+
Sbjct: 1819 IVPPVYRECFDRCVVLITYGDDNVFTVSQSIMESFTGDALKAEMANLGVTITDGKDKSLA 1878
Query: 4875 TIEWKAPGELDXXXXXXXXXXTGVVQAPLDLSAIFSCLHWVTPHPQKMPKGGAQLQVDSV 5054
TI + EL+ G++ APL+ +I S L ++ + D
Sbjct: 1879 TIPARPLLELEFLKRGFKRGNGGMIYAPLEKLSIMSSLVYI--------------RSDGS 1924
Query: 5055 DTLYELALNVQVALTELYLHDDKEEFQRVRNFYVKKMNILPTGYY----TWADREAFHMS 5222
D L +L NV AL EL+LH D+E + VRNFY++K LP G Y TW + FH
Sbjct: 1925 DMLQKLVDNVNSALVELFLHQDREYSESVRNFYLEK---LPPGSYKELTTWYQAQTFHEC 1981
Query: 5223 KQTGMEAYQPAKEIDIDVGQEFARFMHTSDIGNQVHFYTPVLGVAGPFYKPTPDQLLVST 5402
+ +G ++P I+I G FA F+ + H P L ++G Y +++L+S
Sbjct: 1982 QLSGESNWKPQGLIEISHGAGFASFVQQDGTELERHDICPGLAISGARYIAKKEEILMSL 2041
Query: 5403 TPLKQGE-SGYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKS 5579
+ L G+ + + ++ G G+G LP+ + V ++P + + ++ K+
Sbjct: 2042 SSLLPGDVNATKLELKCGDGIGRLPSKASVLAQRKPG--------IVMRLCKQALDEKKT 2093
Query: 5580 LVFRSEAPYVAGNAALMAFGQSAGLLEIQTALNLYRNVI-PESTNGLEQYF 5729
LV R E PY+ G A G+S G I+ L LY N++ PE NGL YF
Sbjct: 2094 LVIRDERPYIGGWAMACICGESFG-FSIRDTLALYANLLGPERKNGLAGYF 2143
>gb|AGD98722.1| polyprotein P1 [Arabis mosaic virus]
Length = 2284
Score = 754 bits (1948), Expect = 0.0
Identities = 565/1851 (30%), Positives = 891/1851 (48%), Gaps = 38/1851 (2%)
Frame = +3
Query: 291 LLAEELEKISDEENCKDAEREINLKYLEISQATENMRAGGLFD---KIKGKAQDLWTSVV 461
+L+ +E++ E++ KDA N++ E+ TE+ G D K A+ + + V
Sbjct: 380 VLSASIEELVTEQDFKDAIELFNVELAELP--TESTTCGRFNDWASTAKTMAKGVGSMVG 437
Query: 462 DFASHPFRRYLATTAEFVEGFSHRVVDAVMSRVNAAIAQFAAQLDIARTIVDQLVVHVKR 641
DFA L T + +E + + NA +A + + L A I+ ++ +
Sbjct: 438 DFARMSGAGVLITFDKCIEYLQEKALTLCQRVFNATMAPYLSHLAEASNIISKIWKKLAE 497
Query: 642 WYTSLCTSFDDSLKLLGKWAGYALGLIVGVGVCHLVE-VICAHMGLPLGGVITGVFTTAY 818
W SL +L++L + A +ALG IV GV LVE V+ A +P G++ G F T +
Sbjct: 498 WMESLKGKAGLALEVLAQHAIFALGAIVVGGVVVLVEKVLVACKIIPSCGIVLGAFLTLF 557
Query: 819 MGWLFVKTPVGSELVMGLRLQVARIARNFFDCQRVGVPPDLPPNPNVGYSVPYEAFGGIG 998
L + L I R C+ G + YSV E
Sbjct: 558 FASLGLTA---------LECTAEEIFRMHQCCK--GAIYSM-------YSVK-EPMSEAE 598
Query: 999 GQPFTMGPDAPNARAIPVVSPIINAMAGFGASMLSMKAMGLIEMGKLGAACHSLRMGKDA 1178
G TMG + + ++A+ G SM+S K K+ L GK A
Sbjct: 599 GSSITMG-------VLQGLDNAVSALTRVGQSMISFKLGSFSYYAKIAQGFDQLARGKKA 651
Query: 1179 LCEFVSTVLYYFGRLADKVTGRETEFFDELSILVQIDVQDWIKRSRGVLLESCYTSLNNM 1358
+ E S ++ G + KV+G+E+ FFDELS +V +DV+ W+ +S+ V L+ ++ +
Sbjct: 652 IGELTSWLIDLVGSVYSKVSGQESTFFDELSTIVCLDVRSWLLKSKRVRLQVETMAIGDR 711
Query: 1359 ILSDVVNKLVMDGERLQVTIAGTPRRLSLDFGQLVSSIMKDLLDLQQRIVRHGVTVGRRK 1538
I D ++KL+ +G ++ VT AG PR+ S DF + + L ++ QR G+ G R+
Sbjct: 712 ITLDTISKLLEEGHKILVTAAGVPRKTSADFTMCIKEEVSKLEEVHQRTACAGINEGMRQ 771
Query: 1539 EPTWIYIFGPSHCGKSNMMDH-LTSEVCRYFDLPYTFIARNGQDNFFTTGYKRQSVLQID 1715
P W+YIFG S GK+ + + + + +LP T + + +GY RQ+ +++D
Sbjct: 772 FPFWVYIFGASQSGKTTIANSVIIPSLLEEMNLPKTSVYSRPKTGGIWSGYARQACVKVD 831
Query: 1716 DLSCVETTPPIEGELINLVACSEYPLKMADLSDKSISFQSPFVISTSNQRTCLPTCGITH 1895
D +E TP + +I++V YPL MA L +K +S SP V++T+N GIT
Sbjct: 832 DFYAIEQTPSLASSMIDVVNSEPYPLDMAYLHEKGMSMDSPLVVTTANTVKPPTNAGITD 891
Query: 1896 CEAYNNRRAVVVEMRRKPGVIFDPMDCHAAMQGRFL-DKRDHTPLFGVQGQP------ET 2054
+++ NRRA V+E+RRK F P ++ RFL +K + GV P E
Sbjct: 892 EDSFFNRRAAVIEVRRKDNTHFTPRAYDNCIEVRFLHNKCAYVDSEGVPQGPAVNTPMEE 951
Query: 2055 YWKDVPEMTTILLNICAAH--RQEQDILQEQHIRKHAVND-PLILASERFLKQESRKALC 2225
W E +L N+ H +E+ +L R+ ND P+ A++ F+
Sbjct: 952 GWVSPSEAVAVLKNLLGEHVLAEEEKLLD---YRERIGNDHPIYNAAQEFIGNMHYPGQ- 1007
Query: 2226 YMPRVEMEMHGVQSQAAGCYYLCVDQKLYTCTDDGNL--VETHCEKPDYERWEKNSSENF 2399
++ + +G+ + G +L VD K+Y G L ET P+ W + + +
Sbjct: 1008 WLTTEQKNTYGINEE--GFSFLAVDGKMYKYNVLGKLNPCETIPPHPNVVPWLEEKTLSI 1065
Query: 2400 VG-GVQALDALECRSILVSGFLRNLVQGQCCVLSVDEMSTTATMAQQRLFKALQLQERVY 2576
V V A R+ LVS FL+ LVQ Q V SVD M ++ QQ FK L L ER+Y
Sbjct: 1066 VHWDVHKHIATGPRNALVSCFLQGLVQDQSRVQSVDLMGKDSSPEQQAFFKRLSLSERIY 1125
Query: 2577 LRLIQKKISPILSEAESNVYSKNAWMRCLEFAAASRDYLKEHGXXXXXXXXXXXXXXXXX 2756
LRL Q +I + E + N S+ + S+ L E+
Sbjct: 1126 LRLCQIRIDAVKKE-QLNGVSRGVLDVLRDCMNKSKARLAEN-YSLLLTLVAILVLIATA 1183
Query: 2757 YYFIGAFIGVXXXXXXXXXXXXXXKEVDMKAQYSSGAQDGRYRSRNIPIRQRYRY----- 2921
Y I +G+ S + Y RN + + R
Sbjct: 1184 YSLISTLVGLAGCSSFAGGLVALNHVSSASIPCSEPRLEEGYIPRNKFVSRISRTRGDGP 1243
Query: 2922 ARGELDEEVPLGGQLAVALY---GSQGRFISAMQYKGKSVMLTRHQMLMFAEKERVTCIY 3092
A+G+ D E L LY R IS ++G+S+++TRHQ + V IY
Sbjct: 1244 AQGQGDHE-----DLVTELYYYFDGVKRLISCCWFRGRSLLMTRHQAMAIPLGNEVQIIY 1298
Query: 3093 L-ATGESVVLTFNRDDVQ-----EFPNHETCLWQAAGMLQLPAKFKDCFLEKGETELAPA 3254
T +V ++D EFP++E +++ A +L +P K++ F++ + +++P
Sbjct: 1299 ADGTERKLVWPGRQEDGSCKGYIEFPDNELVVFEHARLLTMPVKYEKYFVDDPDHQISPN 1358
Query: 3255 FELEGYVLRPDSTAFHYDHLKTWARVQYEPFVVRGNLAREKYVNELPTSIWFQYQSRNND 3434
++ V R + + +A + + ++ Y N++ I + ++++ ND
Sbjct: 1359 VAVKCCVARLEDGLPQFHFWNKYASARSDVHTIKDEGGSAVYQNKIRRYIIYAHEAKRND 1418
Query: 3435 CGMICLAQVGGKKKIVGLLVAGVDQQTWADILPNPCMAEMKSQIEYEFKLGVHTEGYTKL 3614
CG I +A++ K++ +LV+G+ T++ ++PN + ++ + Y + G+ T GY K+
Sbjct: 1419 CGAIAVAEIQRTPKVIAMLVSGIGNVTYSSVIPNYSSSFVRGDVPYVPEDGIKTNGYRKI 1478
Query: 3615 GYLTKDKAPHLPKKNSAVLVRPEYRIDSPVPIKEPSVISVEDPRCPKDSEGKPVDPIMKA 3794
GYL APH+P K + + V E P P K+P+++S ED R K + + P+ +
Sbjct: 1479 GYLMAKDAPHVPSKTAFMRVPDEICFPYPNP-KQPAILSAEDERL-KGTVHEGYTPVREG 1536
Query: 3795 FEKKFTTPMDLLEDDILESIAQEMIEEWHDCESEPLRDVPLEVAINGIPGTQIDDDDEFE 3974
+KF PM LL+ +L+ +A +M+ W D E L DVPL VAING D D+E+
Sbjct: 1537 M-RKFAEPMHLLDAQLLDEVAGDMVHTWFDA-GEFLEDVPLSVAING------DVDEEYF 1588
Query: 3975 DAVECFKMSTSPGYPYVLHKEVGMKGKEAYFELAPDGTKSLKEGTLAAELYENIVQYSKS 4154
D + M TS GYP VL ++ G KGK +F P G + G + Y + + K+
Sbjct: 1589 DPIA---MDTSEGYPEVLQRKPGEKGKARFFVGEP-GAREFVPGCGPEKAYLVLEEECKT 1644
Query: 4155 AIPELVVIECPKDELLKTEKIKQGACRLFEIMPLHYNLFLREKTLAFSLFQQRNRHKLAC 4334
IP L+ IE PKDE LK KI+ RLF ++PL YNL LR K L+FS + R L C
Sbjct: 1645 CIPSLISIETPKDERLKRSKIETPGTRLFSVLPLAYNLLLRVKFLSFSRLLMKKRGYLPC 1704
Query: 4335 QVGTKAYSHDWTHMYQRLVAKSDRAINCDYSGFDGLLNSQVVRCIANMINSMYHSPEETI 4514
QVG YS +WT +Y RL KSD NCDY GFDGL+ Q++ IA MIN+ + +P
Sbjct: 1705 QVGINPYSREWTDLYHRLAEKSDVGYNCDYKGFDGLITEQILTVIAKMINAGFRNP---- 1760
Query: 4515 VSKRQRYNMINALFGRLAILVTGTDRDVMRVRAGLPSGFALTVVINSIFNEILMRYCFKV 4694
VS +QR N++ A+ RL+I V +G+PSG ALTVVINSIFNE+LMRYC+K
Sbjct: 1761 VSNQQRSNLLLAISNRLSI----CGNQVYETESGIPSGCALTVVINSIFNELLMRYCYKK 1816
Query: 4695 LVPGPQRNSFSTYVTLLVYGDDNLMSCTDKVATYFNGESIKATLKKKNVTITDGSDKTSP 4874
+VP R F V L+ YGDDN+ + + + T+F G+++KA + VTITDG DK+
Sbjct: 1817 IVPPIYRECFDRCVVLITYGDDNVFTVSQSIMTHFTGDALKAEMAGLGVTITDGKDKSLA 1876
Query: 4875 TIEWKAPGELDXXXXXXXXXXTGVVQAPLDLSAIFSCLHWVTPHPQKMPKGGAQLQVDSV 5054
TI + EL+ G++ APL+ +I S L ++ + D
Sbjct: 1877 TIPARPLLELEFLKRGFKKGNGGLIYAPLEKLSIMSSLVYI--------------RSDGS 1922
Query: 5055 DTLYELALNVQVALTELYLHDDKEEFQRVRNFYVKKMNILPTGYY----TWADREAFHMS 5222
D L +L NV AL EL+LH D+E + VRNFY++K LP G Y TW + + FH
Sbjct: 1923 DMLQKLVDNVNTALVELFLHQDREYLESVRNFYLEK---LPPGSYKELTTWHEAQTFHEC 1979
Query: 5223 KQTGMEAYQPAKEIDIDVGQEFARFMHTSDIGNQVHFYTPVLGVAGPFYKPTPDQLLVST 5402
+ +G ++P I++ FA F+ + + H P L ++G Y +++L+S
Sbjct: 1980 QLSGESGWKPQGLIEVSHNASFASFVQQNGTELERHDICPGLAISGARYIAKEEEILLSL 2039
Query: 5403 TPLKQGE-SGYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKS 5579
+ L G+ + + ++ G G+G LP+ + V ++P + + ++ K+
Sbjct: 2040 SSLLPGDVNAVKLTLKCGDGIGRLPSRASVLNQRKPG--------IVMQLCARALKEKKT 2091
Query: 5580 LVFRSEAPYVAGNAALMAFGQSAGLLEIQTALNLYRNVI-PESTNGLEQYF 5729
LV R E PY+ G A G+S G I+ L LY N++ P NGL YF
Sbjct: 2092 LVIRDERPYIGGWAMACICGESFG-FSIKDTLALYANLMGPNRKNGLATYF 2141
>gb|ACF32434.1| polyprotein 1 [Arabis mosaic virus]
Length = 2285
Score = 751 bits (1939), Expect = 0.0
Identities = 571/1856 (30%), Positives = 892/1856 (48%), Gaps = 43/1856 (2%)
Frame = +3
Query: 291 LLAEELEKISDEENCKDAEREINLKYLEISQATENMRAGGLFD---KIKGKAQDLWTSVV 461
+L+ +E+++ E++ KDA N++ E+ T++ G D K A+ + + V
Sbjct: 382 VLSASIEELACEQDFKDAIELFNIELAELP--TDSTTCGRFNDWAASAKTMAKGVGSLVG 439
Query: 462 DFASHPFRRYLATTAEFVEGFSHRVVDAVMSRVNAAIAQFAAQLDIARTIVDQLVVHVKR 641
D A L T + +E + + NA +A + + L A I+ ++ +
Sbjct: 440 DLARATGAGALITFDKCLEYLQEKALTLCQKVFNATMAPYLSHLAEASNIIKKIWKKLGE 499
Query: 642 WYTSLCTSFDDSLKLLGKWAGYALGLIVGVGVCHLVE-VICAHMGLPLGGVITGVFTTAY 818
W SL +L++L A +ALG IV GV LVE V+ +P G++ G F T +
Sbjct: 500 WMESLKGKAGLALEVLAHHAIFALGAIVVGGVIVLVEKVLVVCKVIPSCGIVLGAFLTLF 559
Query: 819 MGWLFVKTPVGSELVMGLRLQVARIARNFFDCQRVGVPPDLPPNPNVGYSVPYEAFGGIG 998
L + L I + C+ G + YSV G G
Sbjct: 560 FASLGLTA---------LECTADEIFKMHQCCK--GAIYSM-------YSVKEPVCEGEG 601
Query: 999 GQPFTMGPDAPNARAIPVVSPIINAMAGFGASMLSMKAMGLIEMGKLGAACHSLRMGKDA 1178
D+ + + I+A+ G SM+S K K+ L GK A
Sbjct: 602 --------DSTTRGVLQGLDNAISALTRVGQSMISFKLGSFSYYAKIAQGFDQLARGKRA 653
Query: 1179 LCEFVSTVLYYFGRLADKVTGRETEFFDELSILVQIDVQDWIKRSRGVLLESCYTSLNNM 1358
+ E S ++ G + KV+G+E+ FFDELS +V +DV+ W+ +S+ V L+ ++ +
Sbjct: 654 IGELASWLIDLVGSVYSKVSGQESTFFDELSTIVCLDVRSWLLKSKRVRLQVETMAIGDR 713
Query: 1359 ILSDVVNKLVMDGERLQVTIAGTPRRLSLDFGQLVSSIMKDLLDLQQRIVRHGVTVGRRK 1538
I D ++KL+ +G ++ VT AG PR+ S DF + + L ++ QR G+ G R+
Sbjct: 714 ITLDTISKLLEEGHKILVTAAGVPRKTSADFTMCIKEEVSKLEEVHQRTACAGINEGMRQ 773
Query: 1539 EPTWIYIFGPSHCGKSNMMDH-LTSEVCRYFDLPYTFIARNGQDNFFTTGYKRQSVLQID 1715
P W+YIFG S GK+ + + + + +LP T + + F +GY RQ+ +++D
Sbjct: 774 FPFWVYIFGTSQSGKTTIANSVIIPSLLEEMNLPKTSVYSRPKTGGFWSGYARQACVKVD 833
Query: 1716 DLSCVETTPPIEGELINLVACSEYPLKMADLSDKSISFQSPFVISTSNQRTCLPTCGITH 1895
D +E TP + +I++V YPL MA L +K +S SP V++T+N GIT
Sbjct: 834 DFYAIEQTPSLASSMIDVVNSEPYPLDMAYLHEKGMSMDSPLVVTTANTVKPPTNAGITD 893
Query: 1896 CEAYNNRRAVVVEMRRKPGVIFDPMDCHAAMQGRFL-DKRDHTPLFGVQGQP------ET 2054
++ NRRA V+E+RRK F P ++ RFL +K + GV P E
Sbjct: 894 EASFFNRRAAVIEVRRKDNTHFTPRAYDNCIEVRFLHNKCAYVDSEGVPQGPTVNTPMEE 953
Query: 2055 YWKDVPEMTTILLNICAAH--RQEQDILQEQHIRKHAVND-PLILASERFLKQESRKALC 2225
W E L N+ H +E+ ++ R+ ND P+ A++ F+
Sbjct: 954 GWISPSEAVATLKNLLGEHVLAEEEKLMD---YRERIGNDHPIYNAAQEFIGNMHYPGE- 1009
Query: 2226 YMPRVEMEMHGVQSQAAGCYYLCVDQKLYTCTDDGNL-----VETHCEKPDYERW-EKNS 2387
++ + + ++ + G +L VD K+Y G L TH P+ W E+ +
Sbjct: 1010 WIDADRKKTYEIEDE--GFSFLAVDGKMYKYNVLGKLNPCAVPPTH---PNVIPWLEERT 1064
Query: 2388 SENFVGGVQALDALECRSILVSGFLRNLVQGQCCVLSVDEMSTTATMAQQRLFKALQLQE 2567
+ V A R+ LV+ FL+ LVQ Q V SV+ M ++ QQ FK L L E
Sbjct: 1065 LDKVHWDVHKHIATGPRNALVACFLQGLVQDQSYVQSVEIMGKDSSPEQQAFFKRLSLSE 1124
Query: 2568 RVYLRLIQKKISPILSEAESNVYSKNAWMRCLEFAAASRDYLKEHGXXXXXXXXXXXXXX 2747
R+YLRL Q +I + E S S+ + A S+ L E+
Sbjct: 1125 RIYLRLCQIRIDKVKKEQLSGP-SRGTLDVLRDCMAKSKAKLAEN-YSLLLTLVAVLVLI 1182
Query: 2748 XXXYYFIGAFIGVXXXXXXXXXXXXXXKEVDMKAQYSSGAQDGRYRSRNIPIRQRYRY-- 2921
Y I +G+ + + S + RY +RN + + R
Sbjct: 1183 ATAYSLISTLVGLAGCTSFAGGMVAMNQVSNASMPCSEPRLEERYSARNRFVSRISRVRG 1242
Query: 2922 ---ARGELDEEVPLGGQLAVALY---GSQGRFISAMQYKGKSVMLTRHQMLMFAEKERVT 3083
A+G+ + E +L LY R IS +KG+S+++TRHQ L V
Sbjct: 1243 DGPAKGQGEHE-----ELVTELYYYFDGVKRLISCCWFKGRSLLMTRHQALAIPVGNEVQ 1297
Query: 3084 CIYL-ATGESVVLTFNRDDVQ-----EFPNHETCLWQAAGMLQLPAKFKDCFLEKGETEL 3245
IY T ++ ++D EFP +E +++ A +L +P K++ F++ + ++
Sbjct: 1298 VIYADGTDRKLIWPGKQEDGSCKGYIEFPENELVVFEHARLLTMPIKYEKYFVDDPDRQI 1357
Query: 3246 APAFELEGYVLRPDS--TAFHYDHLKTWARVQYEPFVVRGNLAREKYVNELPTSIWFQYQ 3419
+P ++ V R + FH+ + AR V G A Y N++ I + ++
Sbjct: 1358 SPNVAVKCCVARLEEGLPQFHFWNKYATARSDVHTVVDEGGSA--VYQNKIRRHIIYAHE 1415
Query: 3420 SRNNDCGMICLAQVGGKKKIVGLLVAGVDQQTWADILPNPCMAEMKSQIEYEFKLGVHTE 3599
++ NDCG I +A++ K++ +LV+G T++ ++PN + ++ + Y + G+ T
Sbjct: 1416 AKRNDCGAIAVAEIQRTPKVIAMLVSGSGNVTYSSVIPNYSSSFVRGDVPYVPEDGIKTN 1475
Query: 3600 GYTKLGYLTKDKAPHLPKKNSAVLVRPEYRIDSPVPIKEPSVISVEDPRCPKDSEGKPVD 3779
GY K+GYL + APH+P K + + V E P P K+P+++S ED R K + +
Sbjct: 1476 GYRKVGYLMRKDAPHVPSKTAFMKVPDEICFPYPNP-KQPAILSAEDDRL-KGTVHEGYT 1533
Query: 3780 PIMKAFEKKFTTPMDLLEDDILESIAQEMIEEWHDCESEPLRDVPLEVAINGIPGTQIDD 3959
PI KKF PM LL++ +L+ +A +M++ W D E L DVPL AING D
Sbjct: 1534 PIRDGM-KKFAEPMHLLDEKLLDEVAGDMVQTWFDV-GEFLEDVPLNTAING------DV 1585
Query: 3960 DDEFEDAVECFKMSTSPGYPYVLHKEVGMKGKEAYFELAPDGTKSLKEGTLAAELYENIV 4139
D+E+ D + M TS GYP VL ++ G KGK +F P G + G Y ++
Sbjct: 1586 DEEYFDPMA---MDTSEGYPEVLQRKAGEKGKARFFVGEP-GAREFVPGCGPERAYLSLE 1641
Query: 4140 QYSKSAIPELVVIECPKDELLKTEKIKQGACRLFEIMPLHYNLFLREKTLAFSLFQQRNR 4319
+ K +P L+ IE PKDE LK KI+ RLF ++PL YNL LR K L+FS + R
Sbjct: 1642 EECKVRVPSLISIETPKDERLKRSKIETPGTRLFSVLPLAYNLLLRVKFLSFSRLLMKKR 1701
Query: 4320 HKLACQVGTKAYSHDWTHMYQRLVAKSDRAINCDYSGFDGLLNSQVVRCIANMINSMYHS 4499
L CQVG YS +WT +Y RL +SD NCDY GFDGL+ Q++ +A MIN+ Y +
Sbjct: 1702 SHLPCQVGINPYSREWTDLYHRLAEQSDIGYNCDYKGFDGLITEQILAVVATMINTGYRN 1761
Query: 4500 PEETIVSKRQRYNMINALFGRLAILVTGTDRDVMRVRAGLPSGFALTVVINSIFNEILMR 4679
P VS +QR N++ A+ GRL+I V AG+PSG ALTVVINSIFNE+LMR
Sbjct: 1762 P----VSNQQRSNLLLAICGRLSI----CGNQVYETEAGIPSGCALTVVINSIFNELLMR 1813
Query: 4680 YCFKVLVPGPQRNSFSTYVTLLVYGDDNLMSCTDKVATYFNGESIKATLKKKNVTITDGS 4859
YCFK +VP R F V L+ YGDDN+ + + + F G+++KA + VTITDG
Sbjct: 1814 YCFKKIVPPVYRECFDRCVVLITYGDDNVFTVSQSIMESFTGDALKAEMANVGVTITDGK 1873
Query: 4860 DKTSPTIEWKAPGELDXXXXXXXXXXTGVVQAPLDLSAIFSCLHWVTPHPQKMPKGGAQL 5039
DK+ TI + EL+ G++ APL+ +I S L ++
Sbjct: 1874 DKSLATIPARPLLELEFLKRGIKKGNGGMIYAPLEKLSIMSSLVYI-------------- 1919
Query: 5040 QVDSVDTLYELALNVQVALTELYLHDDKEEFQRVRNFYVKKMNILPTGYY----TWADRE 5207
+ D D L +L NV AL EL+LH DKE F VRNFY++K LP G Y TW +
Sbjct: 1920 RSDGSDMLQKLVDNVNTALVELFLHQDKEYFDSVRNFYLEK---LPPGSYKELTTWYQAQ 1976
Query: 5208 AFHMSKQTGMEAYQPAKEIDIDVGQEFARFMHTSDIGNQVHFYTPVLGVAGPFYKPTPDQ 5387
FH + +G ++P I+I G FA F+ + H P L ++G Y ++
Sbjct: 1977 TFHECQLSGESNWKPQGLIEISHGVGFASFVQQDGTELERHDICPGLAISGARYIAKKEE 2036
Query: 5388 LLVSTTPLKQGE-SGYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHI 5564
+L+S + L G+ + + + ++ G G+G LP+ + V + P + + +
Sbjct: 2037 ILMSLSSLLPGDVNAHKLELKCGDGIGRLPSKASVLAQRNPG--------IVMRLCKQAL 2088
Query: 5565 ESGKSLVFRSEAPYVAGNAALMAFGQSAGLLEIQTALNLYRNVI-PESTNGLEQYF 5729
E K+LV R E PY+ G A G+S G I++ L LY N++ P+ NGL YF
Sbjct: 2089 EEKKTLVIRDERPYIGGWAMACICGESFG-FSIRSTLALYANLLGPDRKNGLAGYF 2143
>gb|AGT56093.1| polyprotein 1 [Arabis mosaic virus]
Length = 2283
Score = 750 bits (1936), Expect = 0.0
Identities = 568/1851 (30%), Positives = 890/1851 (48%), Gaps = 38/1851 (2%)
Frame = +3
Query: 291 LLAEELEKISDEENCKDAEREINLKYLEISQATENMRAGGLFD---KIKGKAQDLWTSVV 461
+L+ +E++ E++ KDA N++ E+ T++ G D K A+ + + V
Sbjct: 379 VLSASIEELITEQDFKDAIELFNIELAELP--TDSTTCGQFNDWASAAKKMAKGVGSIVG 436
Query: 462 DFASHPFRRYLATTAEFVEGFSHRVVDAVMSRVNAAIAQFAAQLDIARTIVDQLVVHVKR 641
DFA L T +E + + NA +A + + L A I+ ++ +
Sbjct: 437 DFARMSGAGVLITFDRCIEYLQKKALTFCQKVFNATMAPYLSHLAEASNIISKIWKKLAE 496
Query: 642 WYTSLCTSFDDSLKLLGKWAGYALGLIVGVGVCHLVE-VICAHMGLPLGGVITGVFTTAY 818
W SL +L++L + A +ALG IV GV LVE V+ A +P G++ G F T +
Sbjct: 497 WMESLKGKAGLALEVLAQHAIFALGAIVVGGVVVLVEKVLVACKVIPNCGIVLGAFLTLF 556
Query: 819 MGWLFVKTPVGSELVMGLRLQVARIARNFFDCQRVGVPPDLPPNPNVGYSVPYEAFGGIG 998
L + L I R C+ G + YSV E
Sbjct: 557 FASLGLTA---------LECTAEEIFRMHQCCK--GAIYSM-------YSVK-EPMNEAE 597
Query: 999 GQPFTMGPDAPNARAIPVVSPIINAMAGFGASMLSMKAMGLIEMGKLGAACHSLRMGKDA 1178
G TMG + + I+A+ G SM+S K K+ L GK A
Sbjct: 598 GSSVTMG-------VLQGLDNAISALTRVGQSMISFKLGSFSYYAKIAQGFDQLARGKKA 650
Query: 1179 LCEFVSTVLYYFGRLADKVTGRETEFFDELSILVQIDVQDWIKRSRGVLLESCYTSLNNM 1358
+ E ++ G + KV+G+E+ FFDELS +V +DV+ W+ +S+ V L+ ++ +
Sbjct: 651 IGELTGWLIDLVGSVYSKVSGQESTFFDELSTIVCLDVRSWLLKSKRVRLQVETMAIGDR 710
Query: 1359 ILSDVVNKLVMDGERLQVTIAGTPRRLSLDFGQLVSSIMKDLLDLQQRIVRHGVTVGRRK 1538
I D ++KL+ +G ++ VT AG PR+ S DF + + L ++ QR G+ G R+
Sbjct: 711 ITLDTISKLLEEGHKILVTAAGVPRKTSADFTMCIKEEVSKLEEVHQRTACAGINEGMRQ 770
Query: 1539 EPTWIYIFGPSHCGKSNMMDH-LTSEVCRYFDLPYTFIARNGQDNFFTTGYKRQSVLQID 1715
P W+YIFG S GK+ + + + + +LP T + + F +GY RQ+ +++D
Sbjct: 771 FPFWVYIFGASQSGKTTIANSVIIPSLLEEMNLPKTSVYSRPKTGGFWSGYARQACVKVD 830
Query: 1716 DLSCVETTPPIEGELINLVACSEYPLKMADLSDKSISFQSPFVISTSNQRTCLPTCGITH 1895
D +E TP + +I++V YPL MA L +K +S SP V++T+N GIT
Sbjct: 831 DFYAIEQTPSLASSMIDVVNSEPYPLDMAYLHEKGMSMDSPLVVTTANTVKPPTNAGITD 890
Query: 1896 CEAYNNRRAVVVEMRRKPGVIFDPMDCHAAMQGRFL-DKRDHTPLFGVQGQP------ET 2054
++ NRRA V+E+RRK F P ++ RFL +K + G+ P E
Sbjct: 891 EASFFNRRAAVIEVRRKDNTHFTPRAYDNCIEVRFLHNKCAYVDSEGIPQGPAVNTPMEE 950
Query: 2055 YWKDVPEMTTILLNICAAH--RQEQDILQEQHIRKHAVND-PLILASERFLKQESRKALC 2225
W E L N+ H +E+ +L R+ ND P+ A++ F+
Sbjct: 951 GWISPSEAVATLKNLLGEHVLAEEEKLLD---YRERIGNDHPIYNAAQEFIGNMHYPGQ- 1006
Query: 2226 YMPRVEMEMHGVQSQAAGCYYLCVDQKLYTCTDDGNL--VETHCEKPDYERWEKNSSENF 2399
++ + +G+ + G +L VD K+Y G L ET P+ W + + +
Sbjct: 1007 WLTTEQKNTYGINEE--GFSFLAVDGKMYKYNVLGKLNPCETVPPHPNVIPWLEEKTLSI 1064
Query: 2400 VG-GVQALDALECRSILVSGFLRNLVQGQCCVLSVDEMSTTATMAQQRLFKALQLQERVY 2576
V A R+ LVS FL+ LVQ Q V SVD M ++ QQ FK L L ER+Y
Sbjct: 1065 VHWDAHKHIATGPRNALVSCFLQGLVQDQSRVQSVDLMGKDSSPEQQAFFKRLTLSERIY 1124
Query: 2577 LRLIQKKISPILSEAESNVYSKNAWMRCLEFAAASRDYLKEHGXXXXXXXXXXXXXXXXX 2756
LRL Q +I + E S+V S+ A + S+ L E+
Sbjct: 1125 LRLCQIRIDAVKKEQLSSV-SRGALDVLRDCMYKSKAKLVEN-YSLLLTLVAILVLIATA 1182
Query: 2757 YYFIGAFIGVXXXXXXXXXXXXXXKEVDMKAQYSSGAQDGRYRSRNIPIRQRYRY----- 2921
Y I IG+ + S + Y RN + + R
Sbjct: 1183 YSLISTLIGLAGCSSFAGGMVALNHVSNASIPCSEPRLEEGYIPRNKFVSRISRTRGDGP 1242
Query: 2922 ARGELDEEVPLGGQLAVALY---GSQGRFISAMQYKGKSVMLTRHQMLMFAEKERVTCIY 3092
A+G+ D E +L LY R IS +KG+S++LTRHQ + + IY
Sbjct: 1243 AQGQGDHE-----ELVTELYYYFDGVKRLISCCWFKGRSLLLTRHQAMAIPIGNEIQVIY 1297
Query: 3093 LATGESVVLTFNRDDVQ------EFPNHETCLWQAAGMLQLPAKFKDCFLEKGETELAPA 3254
E ++ R + + EFP++E +++ A +L +P K++ F++ + +++P
Sbjct: 1298 ADGTERKLVWPGRQEDRSCKGYIEFPDNELVVFEHARLLTMPIKYEKYFVDDPDHQISPN 1357
Query: 3255 FELEGYVLRPDSTAFHYDHLKTWARVQYEPFVVRGNLAREKYVNELPTSIWFQYQSRNND 3434
++ V R + + +A + + ++ Y N++ + + ++++ ND
Sbjct: 1358 VAVKCCVARLEDGIPQFHFWNKYASARSDIHTIKDEGGSAVYQNKIRRYLIYAHEAKRND 1417
Query: 3435 CGMICLAQVGGKKKIVGLLVAGVDQQTWADILPNPCMAEMKSQIEYEFKLGVHTEGYTKL 3614
CG I +A++ K+V +LV+G+ T++ ++P+ + ++ + Y + G+ T GY K+
Sbjct: 1418 CGAIAVAEIQRTPKVVAMLVSGIGNVTYSSVIPSYSSSFVRGDVPYVPEDGIKTNGYRKV 1477
Query: 3615 GYLTKDKAPHLPKKNSAVLVRPEYRIDSPVPIKEPSVISVEDPRCPKDSEGKPVDPIMKA 3794
GYL APH+P K + + V E P P K+P+++S ED R K + + PI +
Sbjct: 1478 GYLMAKDAPHVPSKTAFMKVPDEICFPYPNP-KQPAILSAEDERL-KGTVHEGYTPIREG 1535
Query: 3795 FEKKFTTPMDLLEDDILESIAQEMIEEWHDCESEPLRDVPLEVAINGIPGTQIDDDDEFE 3974
+KF PM LL+ +L+ +A +M+ W D E L DVPL +AING D ++E+
Sbjct: 1536 M-RKFAEPMHLLDAQLLDEVAGDMVHTWFDA-GEYLEDVPLNIAING------DVEEEYF 1587
Query: 3975 DAVECFKMSTSPGYPYVLHKEVGMKGKEAYFELAPDGTKSLKEGTLAAELYENIVQYSKS 4154
D + M TS GYP VL ++ G KGK +F P G + G Y ++ + K+
Sbjct: 1588 DPIA---MDTSEGYPEVLQRKNGEKGKARFFVGEP-GAREFVPGCGPERAYLSLEEECKT 1643
Query: 4155 AIPELVVIECPKDELLKTEKIKQGACRLFEIMPLHYNLFLREKTLAFSLFQQRNRHKLAC 4334
IP LV IE PKDE LK KI+ RLF ++PL YNL LR K L+FS + R L C
Sbjct: 1644 RIPSLVSIETPKDERLKRSKIETPGTRLFSVLPLAYNLLLRVKFLSFSRLLMKKRSHLPC 1703
Query: 4335 QVGTKAYSHDWTHMYQRLVAKSDRAINCDYSGFDGLLNSQVVRCIANMINSMYHSPEETI 4514
QVG YS +WT +Y RL KSD NCDY GFDGL+ QV+ +A MIN+ + P
Sbjct: 1704 QVGINPYSREWTDVYHRLAEKSDVGYNCDYKGFDGLITEQVLAVVATMINAGFRDP---- 1759
Query: 4515 VSKRQRYNMINALFGRLAILVTGTDRDVMRVRAGLPSGFALTVVINSIFNEILMRYCFKV 4694
VS +QR N++ A+ RL+I V AG+PSG ALTVVINSIFNE+LMRYC+K
Sbjct: 1760 VSNQQRSNLLMAISRRLSI----CGSQVYETEAGIPSGCALTVVINSIFNELLMRYCYKK 1815
Query: 4695 LVPGPQRNSFSTYVTLLVYGDDNLMSCTDKVATYFNGESIKATLKKKNVTITDGSDKTSP 4874
+VP R F V L+ YGDDN+ + + + T F G+++KA + VTITDG DK+
Sbjct: 1816 IVPPIYRECFDRCVVLITYGDDNVFTVSQSIMTSFTGDALKAEMANLGVTITDGKDKSLA 1875
Query: 4875 TIEWKAPGELDXXXXXXXXXXTGVVQAPLDLSAIFSCLHWVTPHPQKMPKGGAQLQVDSV 5054
TI + EL+ G++ APL+ +I S L ++ + D
Sbjct: 1876 TIPARPLLELEFLKRGFKIGNGGLIYAPLEKLSIMSSLVYI--------------RSDGS 1921
Query: 5055 DTLYELALNVQVALTELYLHDDKEEFQRVRNFYVKKMNILPTGYY----TWADREAFHMS 5222
D L +L NV AL ELYLH D+E + VR+FY++K LP G Y TW + + FH
Sbjct: 1922 DMLQKLVDNVNTALVELYLHQDREYSESVRDFYLEK---LPPGSYKELTTWYEAQIFHEC 1978
Query: 5223 KQTGMEAYQPAKEIDIDVGQEFARFMHTSDIGNQVHFYTPVLGVAGPFYKPTPDQLLVST 5402
+ +G ++P I++ G FA F+ + + H P L ++G Y +++L+S
Sbjct: 1979 QLSGESGWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISGSKYIAREEEILMSL 2038
Query: 5403 TPLKQGE-SGYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGKS 5579
+ L G+ + + ++ G G+G LP+ + V ++P + + I+ K+
Sbjct: 2039 SSLLPGDINAVKLTLKCGDGIGRLPSKASVLSQRKPG--------IVMQLCARAIKEKKT 2090
Query: 5580 LVFRSEAPYVAGNAALMAFGQSAGLLEIQTALNLYRNVI-PESTNGLEQYF 5729
LV R E PY+ G A G+S G I+ L LY N++ P NGL YF
Sbjct: 2091 LVIRDERPYIGGWAMACICGESFG-FSIKDTLALYANLMGPNRKNGLATYF 2140
>gb|ADJ39331.1| polyprotein P1-III [Arabis mosaic virus]
Length = 2285
Score = 748 bits (1930), Expect = 0.0
Identities = 570/1852 (30%), Positives = 887/1852 (47%), Gaps = 40/1852 (2%)
Frame = +3
Query: 294 LAEELEKISDEENCKDAEREINLKYLEISQATENMRAGGLFD---KIKGKAQDLWTSVVD 464
L+ +E+++ ++ +DA N++ E+ T++ G D K A+ + + V D
Sbjct: 383 LSASIEELACTQDFRDAIELFNIELAELP--TDSTTCGRFSDWAASAKSMAKGVGSLVGD 440
Query: 465 FASHPFRRYLATTAEFVEGFSHRVVDAVMSRVNAAIAQFAAQLDIARTIVDQLVVHVKRW 644
A L T + +E + + NA +A + + L A I+ Q+ + W
Sbjct: 441 LARGAGAGALITFDKCIEYLQEKALTLCQKVFNATMAPYMSHLTEASNIIKQIWKKLSEW 500
Query: 645 YTSLCTSFDDSLKLLGKWAGYALGLIVGVGVCHLVEVICAHMG-LPLGGVITGVFTTAYM 821
SL +L++L A +ALG IV GV LVE + + +P G++ G F T +
Sbjct: 501 MESLKGKAGLALEVLAHHAIFALGAIVVGGVVVLVERVLVYCKVIPCCGIVLGAFLTLFF 560
Query: 822 GWLFVKTPVGSELVMGLRLQVARIARNFFDCQRVGVPPDLPPNPNVGYSVPYEAFGGIGG 1001
L + L I + C+ G + YSV G G
Sbjct: 561 ASLGLTA---------LECTADEIFKMHQCCK--GAIYSM-------YSVKEPVCEGEG- 601
Query: 1002 QPFTMGPDAPNARAIPVVSPIINAMAGFGASMLSMKAMGLIEMGKLGAACHSLRMGKDAL 1181
D+ + + I+A+ G SM+S K K+ L GK A+
Sbjct: 602 -------DSTTKGVLQGLDNAISALTRVGQSMISFKLGSFSYYAKIAQGFDQLARGKRAI 654
Query: 1182 CEFVSTVLYYFGRLADKVTGRETEFFDELSILVQIDVQDWIKRSRGVLLESCYTSLNNMI 1361
E S ++ G + KV+G+E+ FFDELS +V +DV+ W+ +S+ V L+ ++ + I
Sbjct: 655 GELTSWLIDLVGSVYSKVSGQESTFFDELSTIVCLDVRSWLLKSKRVRLQVETMAIGDRI 714
Query: 1362 LSDVVNKLVMDGERLQVTIAGTPRRLSLDFGQLVSSIMKDLLDLQQRIVRHGVTVGRRKE 1541
D ++KL+ +G ++ VT AG PR+ S DF + + L ++ QR G+ G R+
Sbjct: 715 TLDTISKLLEEGHKILVTAAGVPRKTSADFTMCIKEEVSKLEEVHQRTACAGINEGMRQF 774
Query: 1542 PTWIYIFGPSHCGKSNMMDH-LTSEVCRYFDLPYTFIARNGQDNFFTTGYKRQSVLQIDD 1718
P W+YIFG S GK+ + + + + +LP T + + F +GY RQ+ +++DD
Sbjct: 775 PFWVYIFGASQSGKTTIANSVIIPSLLEEMNLPKTSVYSRPKTGGFWSGYARQACVKVDD 834
Query: 1719 LSCVETTPPIEGELINLVACSEYPLKMADLSDKSISFQSPFVISTSNQRTCLPTCGITHC 1898
+E TP + +I++V YPL MA L +K ++ SP V++T+N GIT
Sbjct: 835 FYAIEQTPSLASSMIDVVNSEPYPLDMAYLHEKGMAMDSPLVVTTANTVKPPTNAGITDE 894
Query: 1899 EAYNNRRAVVVEMRRKPGVIFDPMDCHAAMQGRFL-DKRDHTPLFGVQGQP------ETY 2057
++ NRRA V+E+RRK F P ++ RFL +K + GV P E
Sbjct: 895 ASFFNRRAAVIEVRRKDNTHFTPRAYDNCIEVRFLHNKCAYIDSEGVPQGPAVNTPMEEG 954
Query: 2058 WKDVPEMTTILLNICAAH--RQEQDILQEQHIRKHAVND-PLILASERFLKQESRKALCY 2228
W E L N+ H +E+ +L R+ ND P+ A++ F+ +
Sbjct: 955 WVSPSEAVATLKNLLGEHVLAEEEKLLD---YRERIGNDHPIYNAAQEFIGNMHYPGQ-W 1010
Query: 2229 MPRVEMEMHGVQSQAAGCYYLCVDQKLYTCTDDGNL--VETHCEKPDYERWEKNSSENFV 2402
+ + +G+ + G +L VD K+Y G L T P+ W + + V
Sbjct: 1011 LTTEQKNTYGINEE--GFSFLAVDGKMYKYNVLGKLNPCATEPPHPNVIPWLEEKTLTMV 1068
Query: 2403 G-GVQALDALECRSILVSGFLRNLVQGQCCVLSVDEMSTTATMAQQRLFKALQLQERVYL 2579
V A R+ LVS FL+ LVQ Q V SV+ M ++ QQ FK L L ER+YL
Sbjct: 1069 HWDVHKHIATGPRNALVSCFLQGLVQDQSRVQSVELMGKDSSPEQQAFFKRLSLSERIYL 1128
Query: 2580 RLIQKKISPILSEAESNVYSKNAWMRCLEFAAASRDYLKEHGXXXXXXXXXXXXXXXXXY 2759
RL Q +I I E S S+ E A S+ L E+ Y
Sbjct: 1129 RLCQIRIDAIKKEQLSGP-SRGTLDVLRECMAKSKAKLAEN-YSLLLTLVAVLVLIATAY 1186
Query: 2760 YFIGAFIGVXXXXXXXXXXXXXXKEVDMKAQYSSGAQDGRYRSRNIPIRQRYRYARGELD 2939
I +G+ + S + RY +RN + R ARG+
Sbjct: 1187 SLISTLVGLSGCASFAGGMVAMKDVRNASIPCSEPRLEERYSARNRFV-SRISRARGD-- 1243
Query: 2940 EEVPLGGQ-----LAVALY---GSQGRFISAMQYKGKSVMLTRHQMLMFAEKERVTCIYL 3095
P GQ L LY R IS +KG+S+++TRHQ L V IY
Sbjct: 1244 --GPAKGQGEHEELVTELYYYFDGVKRLISCCWFKGRSLLMTRHQALAIPVGNEVQVIYA 1301
Query: 3096 -ATGESVVLTFNRDDVQ-----EFPNHETCLWQAAGMLQLPAKFKDCFLEKGETELAPAF 3257
T +V +++ EFP +E +++ +L +P K++ F++ + +++P
Sbjct: 1302 DGTDRKLVWPGKQENGSCKGYIEFPENELVVFEHVRLLTMPVKYEKYFVDDPDRQISPNV 1361
Query: 3258 ELEGYVLRPDS--TAFHYDHLKTWARVQYEPFVVRGNLAREKYVNELPTSIWFQYQSRNN 3431
++ V R + FH+ + AR V G A Y N++ I + ++++ N
Sbjct: 1362 AVKCCVARLEEGLPQFHFWNKYASARSDVHTVVDEGGSA--VYQNKIRRHIIYAHEAKRN 1419
Query: 3432 DCGMICLAQVGGKKKIVGLLVAGVDQQTWADILPNPCMAEMKSQIEYEFKLGVHTEGYTK 3611
DCG I +A++ K++ +LV+G +++ ++PN + ++ + Y + G+ T GY K
Sbjct: 1420 DCGAIAVAEIQRVPKVIAMLVSGTGNVSYSSVIPNYSSSFVRGDVPYVPEDGIKTNGYRK 1479
Query: 3612 LGYLTKDKAPHLPKKNSAVLVRPEYRIDSPVPIKEPSVISVEDPRCPKDSEGKPVDPIMK 3791
+GYL + APH+P K + + V E P P K+P+++S ED R K + + P
Sbjct: 1480 VGYLMRKDAPHVPSKTAFMKVPDEICFPYPNP-KQPAILSEEDVRL-KGTVHEGYTPTRD 1537
Query: 3792 AFEKKFTTPMDLLEDDILESIAQEMIEEWHDCESEPLRDVPLEVAINGIPGTQIDDDDEF 3971
KKF PM LL++ +L+ +A +M++ W D E L DVPL VAING D D+E+
Sbjct: 1538 GM-KKFAEPMHLLDEKLLDEVAGDMVQTWFDV-GEFLEDVPLNVAING------DVDEEY 1589
Query: 3972 EDAVECFKMSTSPGYPYVLHKEVGMKGKEAYFELAPDGTKSLKEGTLAAELYENIVQYSK 4151
D + M TS GYP VL ++ G KGK +F P G + G + Y ++ + K
Sbjct: 1590 FDPMA---MDTSEGYPEVLQRKAGEKGKARFFVGEP-GAREFVPGCGPEKAYLSLEEECK 1645
Query: 4152 SAIPELVVIECPKDELLKTEKIKQGACRLFEIMPLHYNLFLREKTLAFSLFQQRNRHKLA 4331
+ +P L+ IE PKDE LK KI+ RLF ++PL YNL LR K L+FS + R L
Sbjct: 1646 TRVPSLISIETPKDERLKRSKIETPGTRLFSVLPLAYNLLLRVKFLSFSRLLMKKRSHLP 1705
Query: 4332 CQVGTKAYSHDWTHMYQRLVAKSDRAINCDYSGFDGLLNSQVVRCIANMINSMYHSPEET 4511
CQVG YS +WT +Y RL SD NCDY GFDGL+ Q++ +A MIN+ Y +P
Sbjct: 1706 CQVGINPYSREWTDLYHRLAEMSDVGYNCDYKGFDGLITEQILAVVATMINAGYQNP--- 1762
Query: 4512 IVSKRQRYNMINALFGRLAILVTGTDRDVMRVRAGLPSGFALTVVINSIFNEILMRYCFK 4691
V+ +QR N++ A+ GRL+I V AG+PSG ALTVVINSIFNE+LMRYCFK
Sbjct: 1763 -VANQQRSNLLLAISGRLSI----CGNQVYETEAGIPSGCALTVVINSIFNELLMRYCFK 1817
Query: 4692 VLVPGPQRNSFSTYVTLLVYGDDNLMSCTDKVATYFNGESIKATLKKKNVTITDGSDKTS 4871
+VP R F V L+ YGDDN+ + + + F G+++KA + VTITDG DK+
Sbjct: 1818 KIVPPVYRECFDRCVVLITYGDDNVFTVSQSIMESFTGDALKAEMANLGVTITDGKDKSL 1877
Query: 4872 PTIEWKAPGELDXXXXXXXXXXTGVVQAPLDLSAIFSCLHWVTPHPQKMPKGGAQLQVDS 5051
TI + EL+ G++ APL+ +I S L ++ + D
Sbjct: 1878 ATIPARPLLELEFLKRGFKKGNGGMIYAPLEKLSIMSSLVYI--------------RSDG 1923
Query: 5052 VDTLYELALNVQVALTELYLHDDKEEFQRVRNFYVKKMNILPTGYY----TWADREAFHM 5219
D L +L NV AL EL+LH D+E + VRNFY++K LP G Y TW +AFH
Sbjct: 1924 SDMLQKLVDNVNSALVELFLHQDREYSESVRNFYLEK---LPPGSYKELTTWYQAQAFHE 1980
Query: 5220 SKQTGMEAYQPAKEIDIDVGQEFARFMHTSDIGNQVHFYTPVLGVAGPFYKPTPDQLLVS 5399
+ +G ++P I+I G FA F+ + H P L ++G Y +++L+S
Sbjct: 1981 CQLSGESNWKPQGLIEISHGAGFASFVQQDGTELERHDICPGLAISGARYIAKNEEILMS 2040
Query: 5400 TTPLKQGE-SGYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGK 5576
+ L G+ + + ++ G G+G LP+ + V ++P + + ++ K
Sbjct: 2041 LSSLLPGDVNATKLELKCGDGIGRLPSKASVLAQRKPG--------IVMRLCKQALDEKK 2092
Query: 5577 SLVFRSEAPYVAGNAALMAFGQSAGLLEIQTALNLYRNVI-PESTNGLEQYF 5729
+LV R E PY+ G A G+S G I+ L LY N++ P+ NGL +YF
Sbjct: 2093 TLVIRDERPYIGGWAMACICGESFG-FSIRDTLALYANLLGPKRKNGLAEYF 2143
>gb|ADJ39330.1| polyprotein P1-II [Arabis mosaic virus]
Length = 2285
Score = 748 bits (1930), Expect = 0.0
Identities = 572/1852 (30%), Positives = 888/1852 (47%), Gaps = 40/1852 (2%)
Frame = +3
Query: 294 LAEELEKISDEENCKDAEREINLKYLEI-SQATENMRAGGLFDKIKGKAQDLWTSVVDFA 470
L+ +E+++ E++ KDA N++ E+ + +T R K A+ + V D A
Sbjct: 383 LSASIEELACEQDFKDAIELFNIELAELPTDSTTCGRFNDWASAAKTMAKGTGSLVGDLA 442
Query: 471 SHPFRRYLATTAEFVEGFSHRVVDAVMSRVNAAIAQFAAQLDIARTIVDQLVVHVKRWYT 650
+ T + +E + + NA +A + + L A I+ ++ + W
Sbjct: 443 RLAGAGLVITFDKAIEYLQEKALTLCQKVFNATMAPYVSHLSEASDIIKKIWKKLSEWME 502
Query: 651 SLCTSFDDSLKLLGKWAGYALGLIVGVGVCHLVE-VICAHMGLPLGGVITGVFTTAYMGW 827
SL +L++L A +ALG IV GV LVE V+ A +P G++ G F T +
Sbjct: 503 SLKGKAGLALEVLAHHAIFALGAIVVGGVVVLVEKVLVATKVIPTCGIVLGAFLTLFFAS 562
Query: 828 LFVKTPVGSELVMGLRLQVARIARNFFDCQRVGVPPDLPPNPNVGYSVPYEAFGGIGGQP 1007
L + L I + C+ G + YSV G G
Sbjct: 563 LGLTA---------LECTADEIFKMHQCCK--GAIYSM-------YSVKEPVCEGEG--- 601
Query: 1008 FTMGPDAPNARAIPVVSPIINAMAGFGASMLSMKAMGLIEMGKLGAACHSLRMGKDALCE 1187
D+ + + I+A+ G SM+S K K+ L GK A+ E
Sbjct: 602 -----DSTTKGVLQGLDNAISALTRVGQSMISFKLGSFSYYAKIAQGFDQLARGKRAIGE 656
Query: 1188 FVSTVLYYFGRLADKVTGRETEFFDELSILVQIDVQDWIKRSRGVLLESCYTSLNNMILS 1367
S ++ G + KV+G+E+ FFDELS +V +DV+ W+ +S+ V L+ ++ + I
Sbjct: 657 LTSWLIDLVGSVYSKVSGQESTFFDELSTIVCLDVRSWLLKSKRVRLQVETMAIGDRITL 716
Query: 1368 DVVNKLVMDGERLQVTIAGTPRRLSLDFGQLVSSIMKDLLDLQQRIVRHGVTVGRRKEPT 1547
D ++KL+ +G ++ VT AG PR+ S DF + + L ++ QR G+ G R+ P
Sbjct: 717 DTISKLLEEGHKILVTAAGVPRKTSADFTMCIKEEVSKLEEVHQRTACAGINEGMRQFPF 776
Query: 1548 WIYIFGPSHCGKSNMMDH-LTSEVCRYFDLPYTFIARNGQDNFFTTGYKRQSVLQIDDLS 1724
W+YIFG S GK+ + + + + +LP T + + F +GY RQ+ +++DD
Sbjct: 777 WVYIFGASQSGKTTIANSVIIPSLLEEMNLPKTSVYSRPKTGGFWSGYARQACVKVDDFY 836
Query: 1725 CVETTPPIEGELINLVACSEYPLKMADLSDKSISFQSPFVISTSNQRTCLPTCGITHCEA 1904
+E TP + +I++V YPL MA L +K +S SP V++T+N GIT +
Sbjct: 837 AIEQTPSLASSMIDVVNSEPYPLDMAYLHEKGMSMDSPLVVTTANTVKPPTNAGITDEAS 896
Query: 1905 YNNRRAVVVEMRRKPGVIFDPMDCHAAMQGRFL-DKRDHTPLFGVQGQP------ETYWK 2063
+ NRRA V+E+RRK F P ++ RFL +K + GV P E W
Sbjct: 897 FFNRRAAVIEVRRKDNTHFTPRAYDNCIEVRFLHNKCAYVNSEGVPQGPAVNTPMEEGWV 956
Query: 2064 DVPEMTTILLNICAAH--RQEQDILQEQHIRKHAVND-PLILASERFLKQESRKALCYMP 2234
E L N+ H +E+ +L R+ ND P+ A++ F+ ++
Sbjct: 957 SPSEAVATLKNLLGEHVLAEEEKLLD---YRERIGNDHPIYNAAQEFIGNMHYPGH-WIT 1012
Query: 2235 RVEMEMHGVQSQAAGCYYLCVDQKLYTCTDDGNLVETHCE----KPDYERWEKNSSENFV 2402
+ +G++ + G +L VD K+Y G L CE P+ W + + V
Sbjct: 1013 TEDKNTYGIKDE--GFSFLAVDGKMYKYNVLGKL--NPCEVVPPHPNVIPWLEEKTLTMV 1068
Query: 2403 G-GVQALDALECRSILVSGFLRNLVQGQCCVLSVDEMSTTATMAQQRLFKALQLQERVYL 2579
V A R+ LVS FL+ LVQ Q V SV+ M ++ QQ FK L L ER+YL
Sbjct: 1069 HWDVHKHIATGPRNALVSCFLQGLVQDQSRVQSVELMGKDSSPEQQAFFKRLSLSERIYL 1128
Query: 2580 RLIQKKISPILSEAESNVYSKNAWMRCLEFAAASRDYLKEHGXXXXXXXXXXXXXXXXXY 2759
RL Q +I + E S S+ + A S+ L E+ Y
Sbjct: 1129 RLCQIRIDAVKKEQLSGP-SRGTLDILKDCMAKSKAKLVEN-YSLLLTLVAVLVLIATAY 1186
Query: 2760 YFIGAFIGVXXXXXXXXXXXXXXKEVDMKAQYSSGAQDGRYRSRNIPIRQRYRYARGELD 2939
I +G+ + + S + RY +RN + R ARG+
Sbjct: 1187 SLISTLVGLAGCTSFAGGLVSMKQVSNASMPCSEPRLEDRYAARNRFV-SRISRARGD-- 1243
Query: 2940 EEVPLGGQ-----LAVALY---GSQGRFISAMQYKGKSVMLTRHQMLMFAEKERVTCIYL 3095
P GQ L LY R +S +KG+S+++TRHQ L V IY
Sbjct: 1244 --GPAKGQGEHEELVTELYYYFDGVKRLVSCCWFKGRSLLMTRHQALAIPVGNEVQVIYA 1301
Query: 3096 -ATGESVVLTFNRDDVQ-----EFPNHETCLWQAAGMLQLPAKFKDCFLEKGETELAPAF 3257
T +V ++D EFP +E +++ A +L +P K++ F++ + +++P
Sbjct: 1302 DGTDRKLVWPGKQEDGTCKGYIEFPENELVVFEHARLLTMPIKYEKYFVDDPDRQISPNV 1361
Query: 3258 ELEGYVLRPDS--TAFHYDHLKTWARVQYEPFVVRGNLAREKYVNELPTSIWFQYQSRNN 3431
++ V R + FH+ + AR V G A Y N++ I + ++++ N
Sbjct: 1362 AVKCCVARLEEGLPQFHFWNKYATARSDVHTVVDEGGSA--VYQNKIRRHIIYAHEAKRN 1419
Query: 3432 DCGMICLAQVGGKKKIVGLLVAGVDQQTWADILPNPCMAEMKSQIEYEFKLGVHTEGYTK 3611
DCG I +A++ K++ +LV+G T++ ++PN + ++ + Y + G+ T GY K
Sbjct: 1420 DCGAIAVAEIQRTPKVIAMLVSGSGNITYSSVIPNYSSSFVRGDVPYVPEDGIKTNGYRK 1479
Query: 3612 LGYLTKDKAPHLPKKNSAVLVRPEYRIDSPVPIKEPSVISVEDPRCPKDSEGKPVDPIMK 3791
+GYL + APH+P K + + V E P P K+P+++S ED R K + + PI
Sbjct: 1480 VGYLMRKDAPHVPSKTAFMRVPDEICFPYPNP-KQPAILSDEDERL-KGTIHEGYTPIRD 1537
Query: 3792 AFEKKFTTPMDLLEDDILESIAQEMIEEWHDCESEPLRDVPLEVAINGIPGTQIDDDDEF 3971
+KF PM LL++ +L+ +A +M+ W + E L DVPL VAING D D+E+
Sbjct: 1538 GM-RKFAEPMRLLDEKLLDEVAGDMVHTWFEV-GEFLEDVPLNVAING------DVDEEY 1589
Query: 3972 EDAVECFKMSTSPGYPYVLHKEVGMKGKEAYFELAPDGTKSLKEGTLAAELYENIVQYSK 4151
D + M TS GYP VL ++ G KGK +F + G++ G + Y ++ + K
Sbjct: 1590 FDPMA---MDTSEGYPEVLQRKAGEKGKARFF-IGEPGSREFVPGCGPEKAYLSLEEECK 1645
Query: 4152 SAIPELVVIECPKDELLKTEKIKQGACRLFEIMPLHYNLFLREKTLAFSLFQQRNRHKLA 4331
+P L+ IE PKDE LK KI+ RLF ++PL YNL LR K L+FS + R L
Sbjct: 1646 MRVPSLISIETPKDERLKRSKIETPGTRLFSVLPLAYNLLLRVKFLSFSRLLMKKRSYLP 1705
Query: 4332 CQVGTKAYSHDWTHMYQRLVAKSDRAINCDYSGFDGLLNSQVVRCIANMINSMYHSPEET 4511
CQVG YS +WT +Y RL SD NCDY GFDGL+ Q++ +A MIN+ Y +P
Sbjct: 1706 CQVGINPYSREWTDLYHRLAEMSDVGYNCDYKGFDGLITEQILATVATMINAGYRNP--- 1762
Query: 4512 IVSKRQRYNMINALFGRLAILVTGTDRDVMRVRAGLPSGFALTVVINSIFNEILMRYCFK 4691
VS +QR N++ A+ GRL+I V AG+PSG ALTVVINSIFNE+LMRYCFK
Sbjct: 1763 -VSNQQRSNLLLAISGRLSI----CGNQVYETEAGIPSGCALTVVINSIFNELLMRYCFK 1817
Query: 4692 VLVPGPQRNSFSTYVTLLVYGDDNLMSCTDKVATYFNGESIKATLKKKNVTITDGSDKTS 4871
+VP R F V L+ YGDDN+ + + F G+++KA + VTITDG DK+
Sbjct: 1818 KIVPPIYRECFDRCVVLITYGDDNVFTVAQSIMESFTGDALKAEMATLGVTITDGKDKSL 1877
Query: 4872 PTIEWKAPGELDXXXXXXXXXXTGVVQAPLDLSAIFSCLHWVTPHPQKMPKGGAQLQVDS 5051
TI + EL+ G++ APL+ +I S L ++ + D
Sbjct: 1878 ATIPARPLLELEFLKRGFKKGDGGMIYAPLEKLSIMSSLVYI--------------RSDG 1923
Query: 5052 VDTLYELALNVQVALTELYLHDDKEEFQRVRNFYVKKMNILPTGYY----TWADREAFHM 5219
D L +L NV AL EL+LH D+E + VRNFY++K LP G Y TW ++FH
Sbjct: 1924 SDMLQKLVDNVNSALVELFLHQDREYLESVRNFYLEK---LPPGSYKELTTWYQAQSFHE 1980
Query: 5220 SKQTGMEAYQPAKEIDIDVGQEFARFMHTSDIGNQVHFYTPVLGVAGPFYKPTPDQLLVS 5399
S+ G ++P I+I G FA F+ + H P L ++G Y +++L+S
Sbjct: 1981 SQLCGESNWKPQGLIEISHGAGFASFVQQDGTELERHDICPGLAISGARYIAKSEEILLS 2040
Query: 5400 TTPLKQGE-SGYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGK 5576
+ L G+ + + + ++ G G+G LP+ + V ++P + + + K
Sbjct: 2041 LSSLLPGDVNVHKLDLKCGDGIGRLPSKASVLAQRKPG--------IVMRLCKQALNEKK 2092
Query: 5577 SLVFRSEAPYVAGNAALMAFGQSAGLLEIQTALNLYRNVI-PESTNGLEQYF 5729
+LV R E PY+ G A G+S G I+ L LY N++ P NGL YF
Sbjct: 2093 TLVIRDERPYIGGWAMACICGESFG-FSIRDTLALYANLLGPNRKNGLAGYF 2143
>ref|YP_053925.1| polyprotein 1 [Arabis mosaic virus]
gi|50400891|sp|Q6W8W5.1|POL1_ARMVN RecName: Full=RNA1
polyprotein; AltName: Full=P1; Contains: RecName:
Full=P1A protein; Short=1A; AltName: Full=Protease
cofactor; Contains: RecName: Full=Putative ATP-dependent
helicase; AltName: Full=1B; AltName:
Full=Membrane-binding protein; AltName: Full=NTP-binding
protein; Short=NTB; Contains: RecName: Full=Viral
genome-linked protein; AltName: Full=1C-VPg; Contains:
RecName: Full=Picornain 3C-like protease; Short=3C-like
protease; AltName: Full=1D-PRO; Contains: RecName:
Full=RNA-directed RNA polymerase; AltName: Full=1E-POL
gi|38201608|gb|AAQ73821.1| polyprotein 1 [Arabis mosaic
virus]
Length = 2284
Score = 745 bits (1923), Expect = 0.0
Identities = 567/1852 (30%), Positives = 889/1852 (48%), Gaps = 39/1852 (2%)
Frame = +3
Query: 291 LLAEELEKISDEENCKDAEREINLKYLEISQATENMRAGGLFD---KIKGKAQDLWTSVV 461
+L+ +E++ E++ KDA N++ E+ T++ G D K A+ + + V
Sbjct: 379 VLSASIEELITEQDFKDAIELFNIELAELP--TDSTTCGQFNDWASAAKKMAKGVGSIVG 436
Query: 462 DFASHPFRRYLATTAEFVEGFSHRVVDAVMSRVNAAIAQFAAQLDIARTIVDQLVVHVKR 641
DFA L T +E + + NA +A + + L A I+ ++ +
Sbjct: 437 DFARMSGAGVLITFDRCIEYLQKKALTFCQKVFNATMAPYLSHLAEASNIISKIWKKLAE 496
Query: 642 WYTSLCTSFDDSLKLLGKWAGYALGLIVGVGVCHLVE-VICAHMGLPLGGVITGVFTTAY 818
W SL +L++L + A +ALG IV GV LVE V+ A +P G++ G F T +
Sbjct: 497 WMESLKGKAGLALEVLAQHAIFALGAIVVGGVVVLVEKVLVACKVIPNCGIVLGAFLTLF 556
Query: 819 MGWLFVKTPVGSELVMGLRLQVARIARNFFDCQRVGVPPDLPPNPNVGYSVPYEAFGGIG 998
L + L I R C+ G + YSV E
Sbjct: 557 FASLGLTA---------LECTAEEIFRMHQCCK--GAIYSM-------YSVK-EPMNEAE 597
Query: 999 GQPFTMGPDAPNARAIPVVSPIINAMAGFGASMLSMKAMGLIEMGKLGAACHSLRMGKDA 1178
G TMG + + I+A+ G SM+S K K+ L GK A
Sbjct: 598 GSSVTMG-------VLQGLDNAISALTRVGQSMISFKLGSFSYYAKIAQGFDQLARGKKA 650
Query: 1179 LCEFVSTVLYYFGRLADKVTGRETEFFDELSILVQIDVQDWIKRSRGVLLESCYTSLNNM 1358
+ E ++ G + KV+G+E+ FFDELS +V +DV+ W+ +S+ V L+ ++ +
Sbjct: 651 IGELTGWLIDLVGGVYSKVSGQESTFFDELSTIVCLDVRSWLLKSKRVRLQVETMAIGDR 710
Query: 1359 ILSDVVNKLV-MDGERLQVTIAGTPRRLSLDFGQLVSSIMKDLLDLQQRIVRHGVTVGRR 1535
I D ++K M G ++ +T AG PR+ S DF + + L ++ QR G+ G R
Sbjct: 711 ITLDTISKPTGMQGHKILITAAGVPRKTSADFTMCIKEEVSKLEEVHQRTACAGINEGMR 770
Query: 1536 KEPTWIYIFGPSHCGKSNMMDH-LTSEVCRYFDLPYTFIARNGQDNFFTTGYKRQSVLQI 1712
+ P W+YIFG S GK+ + + + + +LP T + + F +GY RQ+ +++
Sbjct: 771 QFPFWVYIFGASQSGKTTIANSVIIPSLLEEMNLPKTSVYSRPKTGGFWSGYARQACVKV 830
Query: 1713 DDLSCVETTPPIEGELINLVACSEYPLKMADLSDKSISFQSPFVISTSNQRTCLPTCGIT 1892
DD +E TP + +I++V YPL MA L +K +S SP V++T+N GIT
Sbjct: 831 DDFYAIEQTPSLASSMIDVVNSEPYPLDMAYLHEKGMSMDSPLVVTTANTVKPPTNAGIT 890
Query: 1893 HCEAYNNRRAVVVEMRRKPGVIFDPMDCHAAMQGRFL-DKRDHTPLFGVQGQP------E 2051
++ NRRA V+E+RRK F P ++ RFL +K + G+ P E
Sbjct: 891 DEASFFNRRAAVIEVRRKDNTHFTPRAYDNCIEVRFLHNKCAYVDSEGIPQGPAVNTPME 950
Query: 2052 TYWKDVPEMTTILLNICAAH--RQEQDILQEQHIRKHAVND-PLILASERFLKQESRKAL 2222
W E L N+ H +E+ +L R+ ND P+ A++ F+
Sbjct: 951 EGWISPSEAVATLKNLLGEHVLAEEEKLLD---YRERIGNDHPIYNAAQEFIGNMHYPGQ 1007
Query: 2223 CYMPRVEMEMHGVQSQAAGCYYLCVDQKLYTCTDDGNL--VETHCEKPDYERWEKNSSEN 2396
++ + +G+ + G +L VD K+Y G L ET P+ W + + +
Sbjct: 1008 -WLTTEQKNTYGINEE--GFSFLAVDGKMYKYNVLGKLNPCETVPPHPNVIPWLEEKTLS 1064
Query: 2397 FVG-GVQALDALECRSILVSGFLRNLVQGQCCVLSVDEMSTTATMAQQRLFKALQLQERV 2573
V A R+ LVS FL+ LVQ Q V SVD M ++ QQ FK L L ER+
Sbjct: 1065 IVHWDAHKHIATGPRNALVSCFLQGLVQDQSRVQSVDLMGKDSSPEQQAFFKRLTLSERI 1124
Query: 2574 YLRLIQKKISPILSEAESNVYSKNAWMRCLEFAAASRDYLKEHGXXXXXXXXXXXXXXXX 2753
YLRL Q +I + E S+V S+ A + S+ L E+
Sbjct: 1125 YLRLCQIRIDAVKKEQLSSV-SRGALDVLRDCMYKSKAKLVEN-YSLLLTLVAILVLIAT 1182
Query: 2754 XYYFIGAFIGVXXXXXXXXXXXXXXKEVDMKAQYSSGAQDGRYRSRNIPIRQRYRY---- 2921
Y I IG+ + S + Y RN + + R
Sbjct: 1183 AYSLISTLIGLAGCSSFAGGMVALNHVSNASIPCSEPRLEEGYIPRNKFVSRISRTRGDG 1242
Query: 2922 -ARGELDEEVPLGGQLAVALY---GSQGRFISAMQYKGKSVMLTRHQMLMFAEKERVTCI 3089
A+G+ D E +L LY R IS +KG+S++LTRHQ + + I
Sbjct: 1243 PAQGQGDHE-----ELVTELYYYFDGVKRLISCCWFKGRSLLLTRHQAMAIPIGNEIQVI 1297
Query: 3090 YLATGESVVLTFNRDDVQ------EFPNHETCLWQAAGMLQLPAKFKDCFLEKGETELAP 3251
Y E ++ R + + EFP++E +++ A +L +P K++ F++ + +++P
Sbjct: 1298 YADGTERKLVWPGRQEDRSCKGYIEFPDNELVVFEHARLLTMPIKYEKFFVDDPDHQISP 1357
Query: 3252 AFELEGYVLRPDSTAFHYDHLKTWARVQYEPFVVRGNLAREKYVNELPTSIWFQYQSRNN 3431
++ V R + + +A + + ++ Y N++ I + ++++ N
Sbjct: 1358 NVAVKCCVARLEDGIPQFHFWNKYASARSDVHTIKDEGGSAVYQNKIRRYIIYAHEAKRN 1417
Query: 3432 DCGMICLAQVGGKKKIVGLLVAGVDQQTWADILPNPCMAEMKSQIEYEFKLGVHTEGYTK 3611
DCG I +A++ K++ +LV+G+ T++ ++P+ + ++ + Y + G+ T GY K
Sbjct: 1418 DCGAIAVAEIQRTPKVLAMLVSGIGNVTYSSVIPSYSSSFVRGDVPYVPEDGIKTNGYRK 1477
Query: 3612 LGYLTKDKAPHLPKKNSAVLVRPEYRIDSPVPIKEPSVISVEDPRCPKDSEGKPVDPIMK 3791
+GYL APH+P K + + V E P P K+P+++S ED R + + PI +
Sbjct: 1478 VGYLMAKDAPHVPSKTAFMKVPDEICFPYPNP-KQPAILSAEDERLI-GTVHEGYTPIRE 1535
Query: 3792 AFEKKFTTPMDLLEDDILESIAQEMIEEWHDCESEPLRDVPLEVAINGIPGTQIDDDDEF 3971
KKF PM LL+ +L+ +A +M+ W D E L DVPL +AING D ++E+
Sbjct: 1536 GM-KKFAEPMHLLDAQLLDEVAGDMVHTWFDA-GEILEDVPLSIAING------DVEEEY 1587
Query: 3972 EDAVECFKMSTSPGYPYVLHKEVGMKGKEAYFELAPDGTKSLKEGTLAAELYENIVQYSK 4151
D + M TS GYP VL ++ G KGK +F P G + G Y ++ + K
Sbjct: 1588 FDPIA---MDTSEGYPEVLQRKNGEKGKARFFVGEP-GAREFVPGCGPERAYLSLEEECK 1643
Query: 4152 SAIPELVVIECPKDELLKTEKIKQGACRLFEIMPLHYNLFLREKTLAFSLFQQRNRHKLA 4331
+ IP LV IE PKDE LK KI+ RLF ++PL YNL LR K L+FS + R L
Sbjct: 1644 TRIPSLVSIETPKDERLKRSKIETPGTRLFSVLPLAYNLLLRVKFLSFSRLLMKKRSHLP 1703
Query: 4332 CQVGTKAYSHDWTHMYQRLVAKSDRAINCDYSGFDGLLNSQVVRCIANMINSMYHSPEET 4511
CQVG YS +WT +Y RL KSD NCDY GFDGL+ Q++ +A MIN+ + +P
Sbjct: 1704 CQVGINPYSREWTDLYHRLAEKSDVGYNCDYKGFDGLITEQILAVVATMINAGFRNP--- 1760
Query: 4512 IVSKRQRYNMINALFGRLAILVTGTDRDVMRVRAGLPSGFALTVVINSIFNEILMRYCFK 4691
VS +QR N++ A+ GRL+I V AG+PSG ALTVVINSIFNE+LMRYC+K
Sbjct: 1761 -VSNQQRSNLLMAISGRLSI----CGSQVYETEAGIPSGCALTVVINSIFNELLMRYCYK 1815
Query: 4692 VLVPGPQRNSFSTYVTLLVYGDDNLMSCTDKVATYFNGESIKATLKKKNVTITDGSDKTS 4871
+VP R F V L+ YGDDN+ + + + T F G+++KA + VTITDG DK+
Sbjct: 1816 KIVPPIYRECFDRCVVLITYGDDNVFTVSQSIMTSFTGDALKAEMANLGVTITDGKDKSL 1875
Query: 4872 PTIEWKAPGELDXXXXXXXXXXTGVVQAPLDLSAIFSCLHWVTPHPQKMPKGGAQLQVDS 5051
TI + EL+ G++ APL+ +I S L ++ + D
Sbjct: 1876 ATIPARPLLELEFLKRGFKKGNGGLIYAPLEKLSIMSSLVYI--------------RSDG 1921
Query: 5052 VDTLYELALNVQVALTELYLHDDKEEFQRVRNFYVKKMNILPTGYY----TWADREAFHM 5219
D L +L NV AL ELYLH D+E + VR+FY++K LP G Y TW + + FH
Sbjct: 1922 SDMLQKLVDNVNTALVELYLHQDREYSESVRDFYLEK---LPPGSYKELTTWYEAQIFHE 1978
Query: 5220 SKQTGMEAYQPAKEIDIDVGQEFARFMHTSDIGNQVHFYTPVLGVAGPFYKPTPDQLLVS 5399
+ +G ++P I++ G FA F+ + + H P L ++G Y +++L+S
Sbjct: 1979 CQLSGESGWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISGSKYIAREEEILMS 2038
Query: 5400 TTPLKQGE-SGYWVPVETGMGMGSLPTISWVHRFKRPTQLVDAYGYKIWETLRSHIESGK 5576
+ L G+ + + ++ G G+G LP+ + V ++P + + I+ K
Sbjct: 2039 LSSLLPGDINAVKLTLKCGDGIGRLPSKASVLSQRKPG--------IVMQLCARAIKEKK 2090
Query: 5577 SLVFRSEAPYVAGNAALMAFGQSAGLLEIQTALNLYRNVI-PESTNGLEQYF 5729
+LV R E PY+ G A G+S G I+ L LY N++ P NGL YF
Sbjct: 2091 TLVIRDERPYIGGWAMACICGESFG-FSIKDTLALYANLMGPNRKNGLATYF 2141