BLASTX nr result
ID: Paeonia22_contig00000048
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Paeonia22_contig00000048
(2933 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_620620.2| polyprotien 2 [Cycas necrotic stunt virus] gi|1... 1667 0.0
gb|AEN25476.2| polyprotein 2 [Cycas necrotic stunt virus] 1649 0.0
dbj|BAE93234.1| coat protein [Cycas necrotic stunt virus] 1008 0.0
ref|NP_733975.1| capsid protein [Cycas necrotic stunt virus] 955 0.0
ref|NP_733974.1| movement protein [Cycas necrotic stunt virus] 695 0.0
ref|NP_619704.1| polyprotein [Grapevine chrome mosaic virus] gi|... 687 0.0
ref|NP_758518.1| polyprotein [Tomato black ring virus] gi|252473... 666 0.0
ref|YP_006576511.1| p2 protein [Grapevine Anatolian ringspot vir... 664 0.0
emb|CAA56792.1| P2 [Tomato black ring virus] 662 0.0
ref|NP_620113.1| polyprotein [Beet ringspot virus] gi|130403|sp|... 660 0.0
ref|NP_734051.1| 84 kDa protein [grapevine chrome mosaic virus] 409 e-111
ref|NP_758855.1| movement protein [Tomato black ring virus] 400 e-108
ref|NP_733979.1| movement protein [Beet ringspot virus] 395 e-107
ref|NP_734052.1| coat protein [grapevine chrome mosaic virus] 287 2e-74
ref|NP_758856.1| coat protein [Tomato black ring virus] 277 2e-71
gb|AHC03351.1| coat protein, partial [Tomato black ring virus] 274 2e-70
gb|AHC03348.1| coat protein, partial [Tomato black ring virus] 274 2e-70
ref|NP_733980.1| capsid protein [Beet ringspot virus] 273 3e-70
gb|AAB22205.1| coat protein [nepovirus grapevine chrome mosaic v... 273 4e-70
gb|AHC03345.1| coat protein, partial [Tomato black ring virus] 272 6e-70
>ref|NP_620620.2| polyprotien 2 [Cycas necrotic stunt virus]
gi|124106315|sp|Q8QVU9.2|POL2_CNSV RecName: Full=RNA2
polyprotein; AltName: Full=P2; Contains: RecName:
Full=Protein 2A; Short=P2A; Contains: RecName:
Full=Movement protein; AltName: Full=2B-MP; Contains:
RecName: Full=Coat protein; AltName: Full=2C-CP
gi|84369993|dbj|BAB89370.2| polyprotien 2 [Cycas necrotic
stunt virus]
Length = 1240
Score = 1667 bits (4317), Expect = 0.0
Identities = 828/926 (89%), Positives = 859/926 (92%)
Frame = +3
Query: 3 CLGQVLNKLPTMKMDREAIEDQQDHLEDKQGGEILTTPQFVEILXXXXXXXXXXXFSDST 182
CLGQVL+ LPT+KMDREAIEDQQDHLEDKQGGEILTTPQF+E+L F DST
Sbjct: 298 CLGQVLSTLPTVKMDREAIEDQQDHLEDKQGGEILTTPQFIEVLRKKKREVREKEFDDST 357
Query: 183 QGKLLRAKDFTLSKHDVFLANSVLDGLRKSKVIQRFAGKCATSTKITVDLTNKEEVVRYG 362
QGKLL A+DFTLSKHDVFLANSVLDGLRKSK+IQRFAGKCATSTKITVDLTNKEEVVRYG
Sbjct: 358 QGKLLPAEDFTLSKHDVFLANSVLDGLRKSKLIQRFAGKCATSTKITVDLTNKEEVVRYG 417
Query: 363 PKELASESFRQTFNVLNRPEYNALTKLAEAGWKEAKSVVLNLHIRSYLPQQMNAYAFCVI 542
PKELASE FRQTFNVLNRPEYNAL KLAEAGWKEAKSVVLNLHIRSYLPQQMNAYAFCVI
Sbjct: 418 PKELASEGFRQTFNVLNRPEYNALNKLAEAGWKEAKSVVLNLHIRSYLPQQMNAYAFCVI 477
Query: 543 MWGHSSDAQEAALSGSYVYLGDGEATMLQLPLLCDYVGQNLQDFEAYKRSLVLSTVFPEF 722
MWGHSSDAQEAALSGSYVYLGDGEATMLQLPLLC+YVG NLQDFEAYKRSLVLSTVFPEF
Sbjct: 478 MWGHSSDAQEAALSGSYVYLGDGEATMLQLPLLCEYVGHNLQDFEAYKRSLVLSTVFPEF 537
Query: 723 SGIADGKAMFGITSIEFTEYLPTSHAGITHERDSWDAMLRNHTEEKRRFLAGFNVVDTIE 902
SGIADGKAMFGITSIEFTEYLPTSHAGITHERDSWDAMLRNHTEEKRRFLAGFNVVDTIE
Sbjct: 538 SGIADGKAMFGITSIEFTEYLPTSHAGITHERDSWDAMLRNHTEEKRRFLAGFNVVDTIE 597
Query: 903 KGNGKGFSFPDFNLKAVPRHQAVVRTFEDQDVAPILLKSKTMRVKTFGSFRAGNIPVNYL 1082
KGN KGFSFPDF+LKAVPRHQAVVRTFEDQDVAPIL K+K+MRVKTFGSFRAGNIPVN+L
Sbjct: 598 KGNRKGFSFPDFDLKAVPRHQAVVRTFEDQDVAPILSKAKSMRVKTFGSFRAGNIPVNFL 657
Query: 1083 GATTSGACLPRHSISENAGYSMGDMKSAENFVFTQLISMPAASTKGNVLAGVDILANART 1262
G ++G +HS+SENAGYS+GDMKSAENFVFTQLI++PAASTKGNVLAGVDILANART
Sbjct: 658 GTPSNGQVASKHSVSENAGYSVGDMKSAENFVFTQLITVPAASTKGNVLAGVDILANART 717
Query: 1263 TMSGFYVRWLQKGYVDTNLKLICHLPRAPFAGISFFVLIDGTGYLAKDAPTNFNEEEILS 1442
TMSGFY+RWLQKGY+DTNLKLICHLPRAPFAG+SFFVLIDGTGYLAKDAPT+ NEEEILS
Sbjct: 718 TMSGFYMRWLQKGYIDTNLKLICHLPRAPFAGMSFFVLIDGTGYLAKDAPTSLNEEEILS 777
Query: 1443 YPLHLVTTSDVSSYEFVLDWHRYIGQVPFAEENAFLRPTLFLVACVSSTLALSAKVEFYL 1622
YPLHLVTTSDVSSYEFVLDWHRYIGQVPFAEENAFLRPTLFLVACVSSTLALSAKVEFYL
Sbjct: 778 YPLHLVTTSDVSSYEFVLDWHRYIGQVPFAEENAFLRPTLFLVACVSSTLALSAKVEFYL 837
Query: 1623 EAQSVGEELPRTLAPSPVLSYPFQNSFLEDLDLFLPPKRLTLGERETTIIPLSFAKSKKS 1802
EAQSVGEELPRTLAPSPVLSYPFQNSFLEDLDLFLPPKRLTLGERETTIIPLSFAKSKKS
Sbjct: 838 EAQSVGEELPRTLAPSPVLSYPFQNSFLEDLDLFLPPKRLTLGERETTIIPLSFAKSKKS 897
Query: 1803 GDAVLYSHAAARLAHFQXXXXXXXXXXXXXXSQLVASKLRISMWSKEQHIQHQAMNVHVD 1982
GDAVLYSHAAARLAHFQ SQLVAS+ RISMWSKEQHIQHQA+NVHVD
Sbjct: 898 GDAVLYSHAAARLAHFQGIGGVLHGVVYLVGSQLVASQSRISMWSKEQHIQHQAVNVHVD 957
Query: 1983 TDTGVAFNLPIKDAFYASSVYGDSGAVIQVTCLCSPMSPNAIKAPFDMVFKIKGFTPDAP 2162
TDTGVAF+LPIKDAFYASSVYGDSGAVIQVTCLCSPMSPNAIKAPFDM+FKI+GFTPDAP
Sbjct: 958 TDTGVAFDLPIKDAFYASSVYGDSGAVIQVTCLCSPMSPNAIKAPFDMIFKIRGFTPDAP 1017
Query: 2163 MCRTINFTQRFGWFAVEPTTSTGAIKLKIWPVSNHLESEDMKVTEYTNAFLQMCQTSTMH 2342
MCRTINFTQRFGWFAVEPTTSTGAIKLKIWPVSNHLESEDMKVT YTNAFLQMCQTSTMH
Sbjct: 1018 MCRTINFTQRFGWFAVEPTTSTGAIKLKIWPVSNHLESEDMKVTGYTNAFLQMCQTSTMH 1077
Query: 2343 FGSVIIHFSWTLFXXXXXXXXXXXXXXXXEGFGPEEENFRGHCRNFSIYEGKATVPLELG 2522
FGSVIIHFSWTLF EGFGPEEENFRGHCRN SIYEG+ATVPLELG
Sbjct: 1078 FGSVIIHFSWTLFGGTTNAATAGGVVTIAEGFGPEEENFRGHCRNLSIYEGRATVPLELG 1137
Query: 2523 TFAGPTPLKKLDFKYRNWIRFTTPKGKSISSIFCAIEVLPGFSFYGRTGSPRLCVASTTV 2702
TFAGPTPLKKLDFKYRNWIRFTTPKG++ISSIFCAIEVLPGFSFYGRTGSPRL V TTV
Sbjct: 1138 TFAGPTPLKKLDFKYRNWIRFTTPKGRNISSIFCAIEVLPGFSFYGRTGSPRLSVVGTTV 1197
Query: 2703 SPISDVSASNSQSGDEDIGDQYSAAL 2780
P +D S SNSQ GDEDIGDQYSAAL
Sbjct: 1198 PPTADASTSNSQGGDEDIGDQYSAAL 1223
>gb|AEN25476.2| polyprotein 2 [Cycas necrotic stunt virus]
Length = 1289
Score = 1649 bits (4271), Expect = 0.0
Identities = 819/926 (88%), Positives = 851/926 (91%)
Frame = +3
Query: 3 CLGQVLNKLPTMKMDREAIEDQQDHLEDKQGGEILTTPQFVEILXXXXXXXXXXXFSDST 182
CLGQVLN LPTMKMDREAIEDQQDHLEDKQGGEILTTPQF+E+L F DST
Sbjct: 347 CLGQVLNTLPTMKMDREAIEDQQDHLEDKQGGEILTTPQFIEVLRKKKREVREKEFDDST 406
Query: 183 QGKLLRAKDFTLSKHDVFLANSVLDGLRKSKVIQRFAGKCATSTKITVDLTNKEEVVRYG 362
QGKLL AKDFTLSKHDVFLANSVLDGLRKSK++QRFAGKCATSTKITVDLT+KEEVVRY
Sbjct: 407 QGKLLHAKDFTLSKHDVFLANSVLDGLRKSKMVQRFAGKCATSTKITVDLTDKEEVVRYE 466
Query: 363 PKELASESFRQTFNVLNRPEYNALTKLAEAGWKEAKSVVLNLHIRSYLPQQMNAYAFCVI 542
PKEL SE FRQTFNVLNRPEYNAL KLAEAGWKEAKSVVLNLHIRSYLPQQMNAYAFCVI
Sbjct: 467 PKELVSEGFRQTFNVLNRPEYNALNKLAEAGWKEAKSVVLNLHIRSYLPQQMNAYAFCVI 526
Query: 543 MWGHSSDAQEAALSGSYVYLGDGEATMLQLPLLCDYVGQNLQDFEAYKRSLVLSTVFPEF 722
MWGHSSDAQEAALSGSYVYLGDGEATMLQLPLLC+YVG NLQDFEAY RSLVLSTVFPEF
Sbjct: 527 MWGHSSDAQEAALSGSYVYLGDGEATMLQLPLLCEYVGHNLQDFEAYTRSLVLSTVFPEF 586
Query: 723 SGIADGKAMFGITSIEFTEYLPTSHAGITHERDSWDAMLRNHTEEKRRFLAGFNVVDTIE 902
SGIADGKA+FGITSIEFTEYLPTSHAGITHERDSWDAMLRNH EKRRFLAGFNVVDTIE
Sbjct: 587 SGIADGKAIFGITSIEFTEYLPTSHAGITHERDSWDAMLRNHAGEKRRFLAGFNVVDTIE 646
Query: 903 KGNGKGFSFPDFNLKAVPRHQAVVRTFEDQDVAPILLKSKTMRVKTFGSFRAGNIPVNYL 1082
KGNGKGFSFPDF+LKAVPRHQAVVRT EDQDVAPIL K+K+MRVKTFGSFRAGNIPVN+L
Sbjct: 647 KGNGKGFSFPDFDLKAVPRHQAVVRTLEDQDVAPILSKTKSMRVKTFGSFRAGNIPVNFL 706
Query: 1083 GATTSGACLPRHSISENAGYSMGDMKSAENFVFTQLISMPAASTKGNVLAGVDILANART 1262
GA ++G + RHS+SENAGYS+GDMKSAENF FTQLI+MPAASTKGNVLAGVDILANART
Sbjct: 707 GAPSNGQIVSRHSVSENAGYSVGDMKSAENFTFTQLITMPAASTKGNVLAGVDILANART 766
Query: 1263 TMSGFYVRWLQKGYVDTNLKLICHLPRAPFAGISFFVLIDGTGYLAKDAPTNFNEEEILS 1442
TMSGFY+RWLQKGYVDTNLKLICHLPRAPFAGISFFVLIDGTGYLAKDAP +F EEEILS
Sbjct: 767 TMSGFYMRWLQKGYVDTNLKLICHLPRAPFAGISFFVLIDGTGYLAKDAPISFTEEEILS 826
Query: 1443 YPLHLVTTSDVSSYEFVLDWHRYIGQVPFAEENAFLRPTLFLVACVSSTLALSAKVEFYL 1622
YPLHLVTTSDVSSYEFVLDWHRYIGQVPFAEENAFLRPTLFLVACVSSTLALSA+VEFYL
Sbjct: 827 YPLHLVTTSDVSSYEFVLDWHRYIGQVPFAEENAFLRPTLFLVACVSSTLALSARVEFYL 886
Query: 1623 EAQSVGEELPRTLAPSPVLSYPFQNSFLEDLDLFLPPKRLTLGERETTIIPLSFAKSKKS 1802
EAQSVGEELPRTLAPSPVLSYPFQNSFLEDLDLFL PKRL LGERETTIIPLSFAK KKS
Sbjct: 887 EAQSVGEELPRTLAPSPVLSYPFQNSFLEDLDLFLAPKRLALGERETTIIPLSFAKFKKS 946
Query: 1803 GDAVLYSHAAARLAHFQXXXXXXXXXXXXXXSQLVASKLRISMWSKEQHIQHQAMNVHVD 1982
GDA+LYSHAAARLAHFQ SQLVASKLRISMWSK+QHIQHQAMNVH+D
Sbjct: 947 GDAILYSHAAARLAHFQGIGGVLHGVVYLVGSQLVASKLRISMWSKKQHIQHQAMNVHID 1006
Query: 1983 TDTGVAFNLPIKDAFYASSVYGDSGAVIQVTCLCSPMSPNAIKAPFDMVFKIKGFTPDAP 2162
TDTGVAF+LPIKDAFYASSVYGDSGAVIQVTCLCSPMSPNAIKAPFDM+FKI+GF+PDAP
Sbjct: 1007 TDTGVAFDLPIKDAFYASSVYGDSGAVIQVTCLCSPMSPNAIKAPFDMIFKIRGFSPDAP 1066
Query: 2163 MCRTINFTQRFGWFAVEPTTSTGAIKLKIWPVSNHLESEDMKVTEYTNAFLQMCQTSTMH 2342
MCRTINFTQRFGWFAVEPT +TGAIKLKIWPVSNHLES+DMKVT YTNAFLQMCQTSTMH
Sbjct: 1067 MCRTINFTQRFGWFAVEPTATTGAIKLKIWPVSNHLESDDMKVTGYTNAFLQMCQTSTMH 1126
Query: 2343 FGSVIIHFSWTLFXXXXXXXXXXXXXXXXEGFGPEEENFRGHCRNFSIYEGKATVPLELG 2522
FGSVIIHFSWTLF EGFGPEEENFRGHCRNFSIYEGKATVPLELG
Sbjct: 1127 FGSVIIHFSWTLFGGTTNAATAGGVVTIAEGFGPEEENFRGHCRNFSIYEGKATVPLELG 1186
Query: 2523 TFAGPTPLKKLDFKYRNWIRFTTPKGKSISSIFCAIEVLPGFSFYGRTGSPRLCVASTTV 2702
TFAGPTPL+KLDFKYRNWIRFTTPKGKSISSIFCAIEVLPGFSFYGRTGSPRL VA TTV
Sbjct: 1187 TFAGPTPLRKLDFKYRNWIRFTTPKGKSISSIFCAIEVLPGFSFYGRTGSPRLSVAGTTV 1246
Query: 2703 SPISDVSASNSQSGDEDIGDQYSAAL 2780
PI D S S+ Q GDED GDQY+AAL
Sbjct: 1247 PPIVDASTSSLQGGDEDTGDQYAAAL 1272
>dbj|BAE93234.1| coat protein [Cycas necrotic stunt virus]
Length = 569
Score = 1008 bits (2605), Expect = 0.0
Identities = 500/552 (90%), Positives = 513/552 (92%)
Frame = +3
Query: 1125 SENAGYSMGDMKSAENFVFTQLISMPAASTKGNVLAGVDILANARTTMSGFYVRWLQKGY 1304
SENAG+S+GDMKSAENFVFTQLI+MPAASTKGNVLAGVDILANARTTMSGFY+RWLQKGY
Sbjct: 1 SENAGHSVGDMKSAENFVFTQLITMPAASTKGNVLAGVDILANARTTMSGFYMRWLQKGY 60
Query: 1305 VDTNLKLICHLPRAPFAGISFFVLIDGTGYLAKDAPTNFNEEEILSYPLHLVTTSDVSSY 1484
VDTNLKLICHLPRAPFAGISFFVLIDGTGYLAKDAPT+ NEEEILSYPLHLVTTSDVSSY
Sbjct: 61 VDTNLKLICHLPRAPFAGISFFVLIDGTGYLAKDAPTSLNEEEILSYPLHLVTTSDVSSY 120
Query: 1485 EFVLDWHRYIGQVPFAEENAFLRPTLFLVACVSSTLALSAKVEFYLEAQSVGEELPRTLA 1664
EFVLDWHRYIGQVPFAEENAFLRPTLFLVACVSSTLALSAKVEFYLEAQSVGEELPRTLA
Sbjct: 121 EFVLDWHRYIGQVPFAEENAFLRPTLFLVACVSSTLALSAKVEFYLEAQSVGEELPRTLA 180
Query: 1665 PSPVLSYPFQNSFLEDLDLFLPPKRLTLGERETTIIPLSFAKSKKSGDAVLYSHAAARLA 1844
PSPVLSYPFQNSFLEDLDLFLPPKRLTLGERETTIIPLSFAKSKKSGDAVLYSHAAARLA
Sbjct: 181 PSPVLSYPFQNSFLEDLDLFLPPKRLTLGERETTIIPLSFAKSKKSGDAVLYSHAAARLA 240
Query: 1845 HFQXXXXXXXXXXXXXXSQLVASKLRISMWSKEQHIQHQAMNVHVDTDTGVAFNLPIKDA 2024
HFQ SQLVASKL ISMWSKEQH+QHQAMNVHVDTDTGVAF+LPIKDA
Sbjct: 241 HFQGIGGVLHGVVYLVGSQLVASKLHISMWSKEQHVQHQAMNVHVDTDTGVAFDLPIKDA 300
Query: 2025 FYASSVYGDSGAVIQVTCLCSPMSPNAIKAPFDMVFKIKGFTPDAPMCRTINFTQRFGWF 2204
FYASSVYGDSGAVIQ+TCLCSPMSPNAIKAPFDMVFKIKGFTPDAPMCRTINFTQRFGWF
Sbjct: 301 FYASSVYGDSGAVIQITCLCSPMSPNAIKAPFDMVFKIKGFTPDAPMCRTINFTQRFGWF 360
Query: 2205 AVEPTTSTGAIKLKIWPVSNHLESEDMKVTEYTNAFLQMCQTSTMHFGSVIIHFSWTLFX 2384
AVEPTTSTGAIKLKIWPVSNHLESEDMKVT YTNAFLQMCQTSTMHFGSVIIHFSWTLF
Sbjct: 361 AVEPTTSTGAIKLKIWPVSNHLESEDMKVTGYTNAFLQMCQTSTMHFGSVIIHFSWTLFG 420
Query: 2385 XXXXXXXXXXXXXXXEGFGPEEENFRGHCRNFSIYEGKATVPLELGTFAGPTPLKKLDFK 2564
EGFGPEEENFRGHCRNFSIYEGKATVPLELGTFAGPTPLKKLDFK
Sbjct: 421 GTTNAATAGGVVTIAEGFGPEEENFRGHCRNFSIYEGKATVPLELGTFAGPTPLKKLDFK 480
Query: 2565 YRNWIRFTTPKGKSISSIFCAIEVLPGFSFYGRTGSPRLCVASTTVSPISDVSASNSQSG 2744
YRNWIRFTTPKG++ISSIFCAIEVLPGFSFYGRTGSPRL VA TTV P++D S SNSQSG
Sbjct: 481 YRNWIRFTTPKGRNISSIFCAIEVLPGFSFYGRTGSPRLSVAGTTVPPVADASTSNSQSG 540
Query: 2745 DEDIGDQYSAAL 2780
DEDIGDQ +AAL
Sbjct: 541 DEDIGDQCAAAL 552
>ref|NP_733975.1| capsid protein [Cycas necrotic stunt virus]
Length = 564
Score = 955 bits (2469), Expect(2) = 0.0
Identities = 473/532 (88%), Positives = 488/532 (91%)
Frame = +3
Query: 1161 SAENFVFTQLISMPAASTKGNVLAGVDILANARTTMSGFYVRWLQKGYVDTNLKLICHLP 1340
SAENFVFTQLI++PAASTKGNVLAGVDILANARTTMSGFY+RWLQKGY+DTNLKLICHLP
Sbjct: 1 SAENFVFTQLITVPAASTKGNVLAGVDILANARTTMSGFYMRWLQKGYIDTNLKLICHLP 60
Query: 1341 RAPFAGISFFVLIDGTGYLAKDAPTNFNEEEILSYPLHLVTTSDVSSYEFVLDWHRYIGQ 1520
RAPFAG+SFFVLIDGTGYLAKDAPT+ NEEEILSYPLHLVTTSDVSSYEFVLDWHRYIGQ
Sbjct: 61 RAPFAGMSFFVLIDGTGYLAKDAPTSLNEEEILSYPLHLVTTSDVSSYEFVLDWHRYIGQ 120
Query: 1521 VPFAEENAFLRPTLFLVACVSSTLALSAKVEFYLEAQSVGEELPRTLAPSPVLSYPFQNS 1700
VPFAEENAFLRPTLFLVACVSSTLALSAKVEFYLEAQSVGEELPRTLAPSPVLSYPFQNS
Sbjct: 121 VPFAEENAFLRPTLFLVACVSSTLALSAKVEFYLEAQSVGEELPRTLAPSPVLSYPFQNS 180
Query: 1701 FLEDLDLFLPPKRLTLGERETTIIPLSFAKSKKSGDAVLYSHAAARLAHFQXXXXXXXXX 1880
FLEDLDLFLPPKRLTLGERETTIIPLSFAKSKKSGDAVLYSHAAARLAHFQ
Sbjct: 181 FLEDLDLFLPPKRLTLGERETTIIPLSFAKSKKSGDAVLYSHAAARLAHFQGIGGVLHGV 240
Query: 1881 XXXXXSQLVASKLRISMWSKEQHIQHQAMNVHVDTDTGVAFNLPIKDAFYASSVYGDSGA 2060
SQLVAS+ RISMWSKEQHIQHQA+NVHVDTDTGVAF+LPIKDAFYASSVYGDSGA
Sbjct: 241 VYLVGSQLVASQSRISMWSKEQHIQHQAVNVHVDTDTGVAFDLPIKDAFYASSVYGDSGA 300
Query: 2061 VIQVTCLCSPMSPNAIKAPFDMVFKIKGFTPDAPMCRTINFTQRFGWFAVEPTTSTGAIK 2240
VIQVTCLCSPMSPNAIKAPFDM+FKI+GFTPDAPMCRTINFTQRFGWFAVEPTTSTGAIK
Sbjct: 301 VIQVTCLCSPMSPNAIKAPFDMIFKIRGFTPDAPMCRTINFTQRFGWFAVEPTTSTGAIK 360
Query: 2241 LKIWPVSNHLESEDMKVTEYTNAFLQMCQTSTMHFGSVIIHFSWTLFXXXXXXXXXXXXX 2420
LKIWPVSNHLESEDMKVT YTNAFLQMCQTSTMHFGSVIIHFSWTLF
Sbjct: 361 LKIWPVSNHLESEDMKVTGYTNAFLQMCQTSTMHFGSVIIHFSWTLFGGTTNAATAGGVV 420
Query: 2421 XXXEGFGPEEENFRGHCRNFSIYEGKATVPLELGTFAGPTPLKKLDFKYRNWIRFTTPKG 2600
EGFGPEEENFRGHCRN SIYEG+ATVPLELGTFAGPTPLKKLDFKYRNWIRFTTPKG
Sbjct: 421 TIAEGFGPEEENFRGHCRNLSIYEGRATVPLELGTFAGPTPLKKLDFKYRNWIRFTTPKG 480
Query: 2601 KSISSIFCAIEVLPGFSFYGRTGSPRLCVASTTVSPISDVSASNSQSGDEDI 2756
++ISSIFCAIEVLPGFSFYGRTGSPRL V TTV P +D S SNSQ GD I
Sbjct: 481 RNISSIFCAIEVLPGFSFYGRTGSPRLSVVGTTVPPTADASTSNSQGGDMKI 532
Score = 49.3 bits (116), Expect(2) = 0.0
Identities = 26/35 (74%), Positives = 27/35 (77%)
Frame = +1
Query: 2746 MKTLEINTLLP*AGGEDEGFVQDQTLLGVDFLGIS 2850
MK LEIN LLP AGGEDE VQDQ LG+ FLGIS
Sbjct: 530 MKILEINILLPWAGGEDEARVQDQAPLGLMFLGIS 564
>ref|NP_733974.1| movement protein [Cycas necrotic stunt virus]
Length = 683
Score = 695 bits (1794), Expect = 0.0
Identities = 345/386 (89%), Positives = 361/386 (93%)
Frame = +3
Query: 3 CLGQVLNKLPTMKMDREAIEDQQDHLEDKQGGEILTTPQFVEILXXXXXXXXXXXFSDST 182
CLGQVL+ LPT+KMDREAIEDQQDHLEDKQGGEILTTPQF+E+L F DST
Sbjct: 298 CLGQVLSTLPTVKMDREAIEDQQDHLEDKQGGEILTTPQFIEVLRKKKREVREKEFDDST 357
Query: 183 QGKLLRAKDFTLSKHDVFLANSVLDGLRKSKVIQRFAGKCATSTKITVDLTNKEEVVRYG 362
QGKLL A+DFTLSKHDVFLANSVLDGLRKSK+IQRFAGKCATSTKITVDLTNKEEVVRYG
Sbjct: 358 QGKLLPAEDFTLSKHDVFLANSVLDGLRKSKLIQRFAGKCATSTKITVDLTNKEEVVRYG 417
Query: 363 PKELASESFRQTFNVLNRPEYNALTKLAEAGWKEAKSVVLNLHIRSYLPQQMNAYAFCVI 542
PKELASE FRQTFNVLNRPEYNAL KLAEAGWKEAKSVVLNLHIRSYLPQQMNAYAFCVI
Sbjct: 418 PKELASEGFRQTFNVLNRPEYNALNKLAEAGWKEAKSVVLNLHIRSYLPQQMNAYAFCVI 477
Query: 543 MWGHSSDAQEAALSGSYVYLGDGEATMLQLPLLCDYVGQNLQDFEAYKRSLVLSTVFPEF 722
MWGHSSDAQEAALSGSYVYLGDGEATMLQLPLLC+YVG NLQDFEAYKRSLVLSTVFPEF
Sbjct: 478 MWGHSSDAQEAALSGSYVYLGDGEATMLQLPLLCEYVGHNLQDFEAYKRSLVLSTVFPEF 537
Query: 723 SGIADGKAMFGITSIEFTEYLPTSHAGITHERDSWDAMLRNHTEEKRRFLAGFNVVDTIE 902
SGIADGKAMFGITSIEFTEYLPTSHAGITHERDSWDAMLRNHTEEKRRFLAGFNVVDTIE
Sbjct: 538 SGIADGKAMFGITSIEFTEYLPTSHAGITHERDSWDAMLRNHTEEKRRFLAGFNVVDTIE 597
Query: 903 KGNGKGFSFPDFNLKAVPRHQAVVRTFEDQDVAPILLKSKTMRVKTFGSFRAGNIPVNYL 1082
KGN KGFSFPDF+LKAVPRHQAVVRTFEDQDVAPIL K+K+MRVKTFGSFRAGNIPVN+L
Sbjct: 598 KGNRKGFSFPDFDLKAVPRHQAVVRTFEDQDVAPILSKAKSMRVKTFGSFRAGNIPVNFL 657
Query: 1083 GATTSGACLPRHSISENAGYSMGDMK 1160
G ++G +HS+SENAGYS+GDMK
Sbjct: 658 GTPSNGQVASKHSVSENAGYSVGDMK 683
>ref|NP_619704.1| polyprotein [Grapevine chrome mosaic virus]
gi|130399|sp|P13026.1|POL2_GCMV RecName: Full=RNA2
polyprotein; AltName: Full=P2; Contains: RecName:
Full=Protein 2A; Short=P2A; Contains: RecName:
Full=Movement protein; AltName: Full=2B-MP; Contains:
RecName: Full=Coat protein; AltName: Full=2C-CP
gi|59348|emb|CAA33255.1| unnamed protein product
[Grapevine chrome mosaic virus]
Length = 1324
Score = 687 bits (1772), Expect = 0.0
Identities = 379/903 (41%), Positives = 534/903 (59%), Gaps = 26/903 (2%)
Frame = +3
Query: 45 DREAIEDQQDHLEDKQGGEILTTPQFVEILXXXXXXXXXXXFSDSTQGKLLRAKDFTLSK 224
D++ IEDQ DHLE+KQGGEI++TP F+++L F + ++G+L+R+KD LSK
Sbjct: 428 DQDEIEDQLDHLENKQGGEIVSTPSFIKMLKEKRKEVRGKEFEEGSEGRLVRSKDLELSK 487
Query: 225 HDVFLANSVLDGLRKSKVIQRFAGKCATSTKITVDLTNKEEVVRYGPKELASES----FR 392
D+FLA++++D ++++F TK+ VDLTN+EEV++Y KEL + S
Sbjct: 488 KDIFLAHTLMDKFHGMSIVKKFGKSDPKLTKVCVDLTNQEEVIKYPVKELQTTSEGVLSA 547
Query: 393 QTFNVLNRPEYNALTKLAEAGWKEAKSVVLNLHIRSYLPQQMNAYAFCVIMWGHSSDAQE 572
QTF VLNRP++ L +LAE GWKEAKSV LNLHIRSYLP + YAFCVIMWGHSS+A++
Sbjct: 548 QTFTVLNRPQFKELNRLAEVGWKEAKSVCLNLHIRSYLPVHLPVYAFCVIMWGHSSNAEQ 607
Query: 573 AALSGSYVYLGDGEATMLQLPLLCDYVGQNLQDFEAYKRSLVLSTVFPEFSGIADGKAMF 752
A+LSG+YVYLGD EA++LQLPLLC Y+G L+D EAYKRSLVLST F SG++ G+ MF
Sbjct: 608 ASLSGAYVYLGDQEASVLQLPLLCGYIGNALEDMEAYKRSLVLSTCFFGTSGLSPGQNMF 667
Query: 753 GITSIEFTEYLPTSHAGITHERDSWDAMLRNHT-EEKRRFLAGFNVVDTIEKGNGKGFSF 929
GIT++EFTEYLPTS+ GITHERDSW+ MLRNH +K+RF++GFNVVD +E G K F
Sbjct: 668 GITAVEFTEYLPTSYGGITHERDSWNQMLRNHQGVDKQRFISGFNVVDFVEAGKEKQLHF 727
Query: 930 PDFNLKAVPRHQAVVRTFEDQDVAPILLKSKTMRVKTFGSFRAGNIPVN----------- 1076
PDF+L+ VP+HQ +VRTF ++ P+L KS++MRVKTF SFRAGNIP+
Sbjct: 728 PDFDLQPVPKHQPIVRTF-GKEKQPLLNKSRSMRVKTFTSFRAGNIPIGRQIDNTAEAIN 786
Query: 1077 -YLG-ATTSGACLPRHSISENAGYSMGDMKSAENFVFTQLISMPAASTKGNVLAGVDILA 1250
LG A+TS A PR SE ++++ F F I +P A T+G VLA +DI
Sbjct: 787 FELGRASTSNAINPRLDTSET------NLRAGGEFAFIHTIDLPTAVTEGQVLAKIDIFK 840
Query: 1251 NARTTMSGFYVRWLQKGYVDTNLKLICHLPRAPFAGISFFVLIDGTGYLAKDAPTNFNEE 1430
+ S V+W+Q GYV+ NL I HL + F G++ + + D G + D T+ E
Sbjct: 841 KIQDAKSMVCVQWMQAGYVNKNLTFISHLAPSQFCGVAIWYIFDAYGKIPSDVTTSLELE 900
Query: 1431 EILSYPLHLVTTSDVSSYEFVLDWHRYIGQVPFAEENAFLRPTLFLVACVSSTLALSAKV 1610
S H+ D + + +D+H+ GQ F +PTL+++A ++ L SA+V
Sbjct: 901 IARSLCPHVHVLRDSKTSVWTIDFHKICGQSLNFSGRGFSKPTLWVIAASTAQLPWSAQV 960
Query: 1611 EFYLEAQSVGEELPRTLAPSPVLSYPFQNSFLEDLDLFLPPKRLTLGERETTIIPLSFA- 1787
+ LEA + G+E+ LA +++YP L+D+++ LPP+++ +G + PLSFA
Sbjct: 961 TYRLEALAQGDEIAHGLATRSIVTYPISLEHLKDIEIMLPPRQMAIGNAGSINFPLSFAV 1020
Query: 1788 KSKKSGDAVLYSHAAARLAHFQXXXXXXXXXXXXXXSQLVASKLRISMWSKEQHIQHQAM 1967
+ K S + YS+AA L+HF S V ++LR+++W ++ +
Sbjct: 1021 QQKSSSGRIAYSYAAGLLSHFLGIGGTIHFKIQCTSSAFVTARLRVALWGDTITLEQLSQ 1080
Query: 1968 NVHVDTDTGVAFNLPIKDAFYASSVYGDSGAVIQVTCLCSPMSPNAIKAPFDMVFKIKGF 2147
HVD D V +L I+ FYA++ +GDSGA VT + SPM+P +++ + +I G
Sbjct: 1081 MPHVDCDVDVVSSLKIQSPFYATANFGDSGARFWVTPMSSPMAPETMESKLEYYIQILGI 1140
Query: 2148 TPDAPMCRTINFTQRFGWFAV----EPTTSTGAIKLKIWPVSNHLESEDMKVTEYTNAFL 2315
D PMCR IN+ QRF WF + +P S +KL + ++ ++ VT Y NAF
Sbjct: 1141 DADPPMCRQINYDQRFAWFTLLRPPDPKLSK-ILKLTLPSRVCNIAYKEATVTNYVNAFA 1199
Query: 2316 QMCQTSTMHFGSVIIHFSWTLFXXXXXXXXXXXXXXXXEGFGPEEENFRGHCRNFSI--- 2486
MC T+ MH G I+HFSWTL G G + H F +
Sbjct: 1200 IMCATTGMHAGKCILHFSWTL-NKGTSFKDLQGHISFYSGMG--DSTIGEHHGEFHLGGP 1256
Query: 2487 YEGKATVPLELGTFAGPTPLKKLDFKYRNWIRFTTPKGKSISSIFCAIEVLPGFSFYGRT 2666
VP E G+FAGP F NW+R T ++S+ I+VLPGF FYGR+
Sbjct: 1257 LSSSLAVPFEFGSFAGPVTSGGTPFTSENWLRVETAHWDWLTSLTVDIQVLPGFRFYGRS 1316
Query: 2667 GSP 2675
P
Sbjct: 1317 AGP 1319
>ref|NP_758518.1| polyprotein [Tomato black ring virus] gi|25247364|gb|AAN72831.1|
polyprotein [Tomato black ring virus]
Length = 1343
Score = 666 bits (1719), Expect = 0.0
Identities = 367/890 (41%), Positives = 520/890 (58%), Gaps = 13/890 (1%)
Frame = +3
Query: 45 DREAIEDQQDHLEDKQGGEILTTPQFVEILXXXXXXXXXXXFSDSTQGKLLRAKDFTLSK 224
D++ EDQ DHLE+KQGGEI++TP F+++L F + ++G+L+R+ D LSK
Sbjct: 452 DQDETEDQLDHLENKQGGEIVSTPSFIKMLKDKRKEVRGKEFVEGSEGRLVRSADLELSK 511
Query: 225 HDVFLANSVLDGLRKSKVIQRFAGKCATSTKITVDLTNKEEVVRYGPKELASES----FR 392
D+FLA++++D ++++F TK+ VDLTN+EEV+R+ KEL + S
Sbjct: 512 KDIFLAHTLMDKFHGMSIVRKFGKSDPKLTKVCVDLTNQEEVIRFPAKELQTTSEGVLSA 571
Query: 393 QTFNVLNRPEYNALTKLAEAGWKEAKSVVLNLHIRSYLPQQMNAYAFCVIMWGHSSDAQE 572
QTF VLNRP++ L KLAEAGWKEAKSV LNLHIRSYLP + YAFCVIMWGHSS+A++
Sbjct: 572 QTFTVLNRPQFKELNKLAEAGWKEAKSVCLNLHIRSYLPVHLPVYAFCVIMWGHSSNAEQ 631
Query: 573 AALSGSYVYLGDGEATMLQLPLLCDYVGQNLQDFEAYKRSLVLSTVFPEFSGIADGKAMF 752
A+LSG+YVYLGD EA++LQLPLLC Y+G L+D +AYKRSLVLST F SG++ G+ MF
Sbjct: 632 ASLSGAYVYLGDQEASVLQLPLLCGYIGNALEDMDAYKRSLVLSTCFFGTSGLSAGQNMF 691
Query: 753 GITSIEFTEYLPTSHAGITHERDSWDAMLRNHT-EEKRRFLAGFNVVDTIEKGNGKGFSF 929
GIT++EFTEYLPTS+ GITHERDSW+ MLRNH +K+RF++GFNVVD +E G K +F
Sbjct: 692 GITAVEFTEYLPTSYGGITHERDSWNQMLRNHQGVDKQRFISGFNVVDFVEAGKEKQLNF 751
Query: 930 PDFNLKAVPRHQAVVRTFEDQDVAPILLKSKTMRVKTFGSFRAGNIPVNYLGATTSGAC- 1106
P+F+L+ VP+ Q VRTF ++ P+L KS++MRVKTF SFRAGNIPV T+ A
Sbjct: 752 PEFDLQPVPKSQPTVRTF-GEEKQPLLNKSRSMRVKTFSSFRAGNIPVGRRLDNTTEAIN 810
Query: 1107 --LPRHSISE--NAGYSMGDMKSAENFVFTQLISMPAASTKGNVLAGVDILANARTTMSG 1274
L R S S S ++K+ +F + I++PA S G++LA +D+++ + T +
Sbjct: 811 YELARASTSNQPRLDESSCNLKADGDFACGETITLPATSASGSILAKIDLISLIKNTNTR 870
Query: 1275 FYVRWLQKGYVDTNLKLICHLPRAPFAGISFFVLIDGTGYLAKDAPTNFNEEEILSYPLH 1454
WL GYV NL+ + HL F+GIS + + D G + D T E H
Sbjct: 871 VCSEWLMDGYVSQNLRAVSHLAPNSFSGISIWYIFDAYGKIPADISTTIELEMAKCLSPH 930
Query: 1455 LVTTSDVSSYEFVLDWHRYIGQVPFAEENAFLRPTLFLVACVSSTLALSAKVEFYLEAQS 1634
+ T D ++ +++D+H+ GQ F +PTL++V LA SA+ +F LE +
Sbjct: 931 VQTLRDATTSSWIIDFHKMCGQTLNFSGPGFCKPTLYIVVASEFQLARSAETKFRLEFYA 990
Query: 1635 VGEELPRTLAPSPVLSYPFQNSFLEDLDLFLPPKRLTLGERETTIIPLSFA-KSKKSGDA 1811
GE L R L+ +P L+YP ++ LEDLDL L + +G T +P+S A + +
Sbjct: 991 TGERLVRGLSENP-LTYPIESRHLEDLDLILKSGSIAVGTYTMTKVPVSLAMRIDSAAKR 1049
Query: 1812 VLYSHAAARLAHFQXXXXXXXXXXXXXXSQLVASKLRISMWSKEQHIQHQAMNVHVDTDT 1991
YS+AA L+HF S V+ LRI++W A HVD
Sbjct: 1050 QAYSYAAGILSHFLGVGGEIIFSVHSTASTFVSCSLRIALWGTVPTTDELAQIPHVDVTL 1109
Query: 1992 GVAFNLPIKDAFYASSVYGDSGAVIQVTCLCSPMSPNAIKAPFDMVFKIKGFTPDAPMCR 2171
L I+ F+A++ +GD G ++ LC+P++P ++ F I G A +CR
Sbjct: 1110 DTKATLQIQSPFFATANFGDDGTAFYISTLCAPLAPETMETGFQYYIHIHGIKVKANLCR 1169
Query: 2172 TINFTQRFGWFAVE--PTTSTGAIKLKIWPVSNHLESEDMKVTEYTNAFLQMCQTSTMHF 2345
IN+ Q F WF +E T +TG + LKI +L S+++++T + NA MC T+ MHF
Sbjct: 1170 EINYNQHFAWFMLEHLDTNTTGMVSLKIPARMANLTSKEVQITNFVNALAIMCATTGMHF 1229
Query: 2346 GSVIIHFSWTLFXXXXXXXXXXXXXXXXEGFGPEEENFRGHCRNFSIYEGKATVPLELGT 2525
G +HFSW F G E+F G +F+ ++P + G+
Sbjct: 1230 GKCTLHFSWNWFRGKLADQSGVFSIQTGMGKSTVAEHFGGR-HSFNYPATNFSLPFQFGS 1288
Query: 2526 FAGPTPLKKLDFKYRNWIRFTTPKGKSISSIFCAIEVLPGFSFYGRTGSP 2675
FAGP NW+R P K I+S+ +IEV GF FYGR+ P
Sbjct: 1289 FAGPISCGGEPMAAENWVRLQIPNMKWITSLTVSIEVHDGFQFYGRSAGP 1338
>ref|YP_006576511.1| p2 protein [Grapevine Anatolian ringspot virus]
gi|34016871|gb|AAQ56596.1| p2 protein [Grapevine
Anatolian ringspot virus]
Length = 1350
Score = 664 bits (1714), Expect = 0.0
Identities = 374/894 (41%), Positives = 518/894 (57%), Gaps = 17/894 (1%)
Frame = +3
Query: 45 DREAIEDQQDHLEDKQGGEILTTPQFVEILXXXXXXXXXXXFSDSTQGKLLRAKDFTLSK 224
DRE +EDQ DHLE+KQGGEI+TTP FV++L F ++G+L+R+ D TL K
Sbjct: 459 DREEVEDQLDHLENKQGGEIITTPAFVKMLKEKRKEVRGNEFVSGSEGRLVRSSDLTLDK 518
Query: 225 HDVFLANSVLDGLRKSKVIQRFAGKCATSTKITVDLTNKEEVVRYGPKELASESFR---- 392
DVFL+NS+L+ L+K+ +++ F GK TK+ VD+TN++E+VRY KE+ S++
Sbjct: 519 RDVFLSNSILENLKKAGIVKSFVGKDPKLTKVCVDMTNQQEIVRYPSKEMCSDTSGVYTG 578
Query: 393 QTFNVLNRPEYNALTKLAEAGWKEAKSVVLNLHIRSYLPQQMNAYAFCVIMWGHSSDAQE 572
Q F VLNRP++ L KLAEAGWKEAKSV LNLHIRSY+P Y FCVIMWGHSSDA+
Sbjct: 579 QVFTVLNRPQFKELNKLAEAGWKEAKSVCLNLHIRSYVPVHTPLYVFCVIMWGHSSDAET 638
Query: 573 AALSGSYVYLGDGEATMLQLPLLCDYVGQNLQDFEAYKRSLVLSTVFPEFSGIADGKAMF 752
A+L G+ YLGD EA +L+LPL+C ++G +L+DFEAY+RSLVLS+VF +G++ G+ +F
Sbjct: 639 ASLCGAGCYLGDQEAAVLELPLVCSHLGNSLEDFEAYQRSLVLSSVFFGKAGLSGGQPVF 698
Query: 753 GITSIEFTEYLPTSHAGITHERDSWDAMLRNHT-EEKRRFLAGFNVVDTIEKGNGKGFSF 929
GIT++EFTEY+PTS+ GITHERDSW AMLRNH ++K RF+AGFNVVD +E+ +
Sbjct: 699 GITAVEFTEYMPTSYGGITHERDSWQAMLRNHQGKDKGRFIAGFNVVDALERDKEEPIQM 758
Query: 930 PDFNLKAVPRHQAVVRTFEDQDVAPILLKSKTMRVKTFGSFRAGNIPVNYLGATTSGAC- 1106
P L+ VPRH+ VVRTF + P L KS++MR+++F +FR G+IPV T+ A
Sbjct: 759 PHLELEPVPRHRPVVRTFTGEGKQP-LDKSRSMRIQSFAAFRGGSIPVGRRVDNTAEAIK 817
Query: 1107 --LPRHSISENAGYSMGDMKSAEN-------FVFTQLISMPAASTKGNVLAGVDILANAR 1259
L R S SE G + N FVF I +P A T G VLA +DIL +
Sbjct: 818 YELGRASTSELGTSLKGRLDEQSNIRSNDGDFVFVHTIDLPNAVTVGTVLAKIDILEKIK 877
Query: 1260 TTMSGFYVRWLQKGYVDTNLKLICHLPRAPFAGISFFVLIDGTGYLAKDAPTNFNEEEIL 1439
TT S W+Q GY+D NLKLI HL + F G++ + + D G++ D T + +
Sbjct: 878 TTHSAVCAEWVQMGYMDRNLKLISHLAPSQFCGVAIWYVFDAYGHIPSDITTTIELDMVR 937
Query: 1440 SYPLHLVTTSDVSSYEFVLDWHRYIGQVPFAEENAFLRPTLFLVACVSSTLALSAKVEFY 1619
+ H+ + +S + +D+HRY GQ F P L+++A S+ L SA V +
Sbjct: 938 NLSPHIHVLREPTSAVWTIDFHRYCGQSLNFAGRGFCNPYLWVIAATSAQLPWSAPVVYR 997
Query: 1620 LEAQSVGEELPRTLAPSPVLSYPFQNSFLEDLDLFLPPKRLTLGERETTIIPLSFA-KSK 1796
LEA GE + LA VL YP L DLDL L P+ + +G + TT PLSFA K
Sbjct: 998 LEALVTGERYVQGLATEGVLEYPISPKHLRDLDLTLTPRTMAVGTQATTNFPLSFATKQV 1057
Query: 1797 KSGDAVLYSHAAARLAHFQXXXXXXXXXXXXXXSQLVASKLRISMWSKEQHIQHQAMNVH 1976
+ V YS+AA L+HF S V+S+LR+++W + + H
Sbjct: 1058 SASKRVSYSYAAGLLSHFLGVGGILHFKVQCTSSAFVSSRLRVALWGAQITMIQLCQMPH 1117
Query: 1977 VDTDTGVAFNLPIKDAFYASSVYGDSGAVIQVTCLCSPMSPNAIKAPFDMVFKIKGFTPD 2156
VD D GV +L I+ FYA++ GDS A VT + SPM+P AI++ + +I G D
Sbjct: 1118 VDVDVGVTASLKIQSPFYATANLGDSDAAFWVTPMSSPMAPEAIESALEYYIQILGIEAD 1177
Query: 2157 APMCRTINFTQRFGWFA-VEPTTSTGAIKLKIWPVSNHLESEDMKVTEYTNAFLQMCQTS 2333
P+CR IN+ Q FGWF V +T+ I LKI ++E ++ +V + NAF MC T+
Sbjct: 1178 TPLCRAINYKQAFGWFTLVRRSTTNKEIALKIPSRIANIEYKEAEVINHVNAFSIMCATT 1237
Query: 2334 TMHFGSVIIHFSWTLFXXXXXXXXXXXXXXXXEGFGPEEENFRGHCRNFSIYEGKATVPL 2513
M +GS + L G E+ G + + +P
Sbjct: 1238 GMQWGS-----PFALHLDSHMTQADDQKICESHSAGITTEHI-GDIKMCGVLATSQVIPF 1291
Query: 2514 ELGTFAGPTPLKKLDFKYRNWIRFTTPKGKSISSIFCAIEVLPGFSFYGRTGSP 2675
E+G+FAGP F+ NWIR + +S+ +IEVL GF FYGR+ P
Sbjct: 1292 EIGSFAGPVTSGGTPFESENWIRVWSKHWDWFTSLSVSIEVLEGFRFYGRSAGP 1345
>emb|CAA56792.1| P2 [Tomato black ring virus]
Length = 1344
Score = 662 bits (1709), Expect = 0.0
Identities = 366/896 (40%), Positives = 516/896 (57%), Gaps = 20/896 (2%)
Frame = +3
Query: 48 REAIEDQQDHLEDKQGGEILTTPQFVEILXXXXXXXXXXXFSDSTQGKLLRAKDFTLSKH 227
++ EDQ DHLE+KQGGEI++TP F+++L F + ++G+L+R+ D LSK
Sbjct: 453 QDETEDQLDHLENKQGGEIVSTPSFIKMLKDKRKEVRGKEFVEGSEGRLVRSADLELSKK 512
Query: 228 DVFLANSVLDGLRKSKVIQRFAGKCATSTKITVDLTNKEEVVRYGPKELASES----FRQ 395
D+FLA++++D ++++F TK+ VDLTN+EEV+R+ KEL + S Q
Sbjct: 513 DIFLAHTLMDKFHGMSIVKKFGKSDPKLTKVCVDLTNQEEVIRFPAKELQTTSEGVLSAQ 572
Query: 396 TFNVLNRPEYNALTKLAEAGWKEAKSVVLNLHIRSYLPQQMNAYAFCVIMWGHSSDAQEA 575
TF VLNRP++ L +LAEAGWKEAKSV LNLHIRSYLP + YAFCVIMWGHSS+A++A
Sbjct: 573 TFTVLNRPQFKELNRLAEAGWKEAKSVCLNLHIRSYLPVHLPVYAFCVIMWGHSSNAEQA 632
Query: 576 ALSGSYVYLGDGEATMLQLPLLCDYVGQNLQDFEAYKRSLVLSTVFPEFSGIADGKAMFG 755
+LSG+YVYLGD EA++LQLPLLC Y+G L+D EAYKRSLVLST F SG++ G+ MFG
Sbjct: 633 SLSGAYVYLGDQEASVLQLPLLCGYIGNALEDMEAYKRSLVLSTCFFGTSGLSAGQNMFG 692
Query: 756 ITSIEFTEYLPTSHAGITHERDSWDAMLRNHT-EEKRRFLAGFNVVDTIEKGNGKGFSFP 932
IT++EFTEYLPTS+ GITHERDSW+ MLRNH +K+RF++GFNVVD +E G K SFP
Sbjct: 693 ITAVEFTEYLPTSYGGITHERDSWNQMLRNHQGTDKQRFISGFNVVDFVEAGKEKQLSFP 752
Query: 933 DFNLKAVPRHQAVVRTFEDQDVAPILLKSKTMRVKTFGSFRAGNIPVN------------ 1076
+F+L+ VP+ Q +VRTF ++ P+L KS++MRVKTF SFRAGNIPV
Sbjct: 753 EFDLQPVPKSQPIVRTF-GEEKQPLLNKSRSMRVKTFSSFRAGNIPVGRHVDNATEAIRY 811
Query: 1077 YLGATTSGACLPRHSISENAGYSMGDMKSAENFVFTQLISMPAASTKGNVLAGVDILANA 1256
LG ++ PR S ++K+ +F + I +PA S G++LA +D+++
Sbjct: 812 ELGRASTSGVQPR------LDESCCNIKADGDFACGETIILPATSASGSILAKIDLISLI 865
Query: 1257 RTTMSGFYVRWLQKGYVDTNLKLICHLPRAPFAGISFFVLIDGTGYLAKDAPTNFNEEEI 1436
+ T + WL GYV NL+ + HL F+GIS + + D G + D T E
Sbjct: 866 KNTNTRVCSEWLMDGYVSQNLRAVSHLAPNSFSGISIWYIFDAYGKIPADISTTIELEMA 925
Query: 1437 LSYPLHLVTTSDVSSYEFVLDWHRYIGQVPFAEENAFLRPTLFLVACVSSTLALSAKVEF 1616
H+ T D ++ +++D+H+ GQ F +PTL++V LA SA+ +F
Sbjct: 926 KCLSPHVQTLRDATTSSWIIDFHKMCGQTLNFSGPGFCKPTLYVVVASEFQLARSAETKF 985
Query: 1617 YLEAQSVGEELPRTLAPSPVLSYPFQNSFLEDLDLFLPPKRLTLGERETTIIPLSFA-KS 1793
LE + GE L R L+ +P L+YP + LEDLDL L + +G T +P+S A +
Sbjct: 986 RLEFYATGERLVRGLSENP-LTYPIKPGHLEDLDLVLKSGSIAIGTYTMTKVPVSLAMRV 1044
Query: 1794 KKSGDAVLYSHAAARLAHFQXXXXXXXXXXXXXXSQLVASKLRISMWSKEQHIQHQAMNV 1973
+ YS+AA L+HF S V+ LR+++W + A
Sbjct: 1045 DSAAKRQAYSYAAGVLSHFLGVGGDIIFSVHSTASTFVSCSLRVALWGTIPTTEELAQIP 1104
Query: 1974 HVDTDTGVAFNLPIKDAFYASSVYGDSGAVIQVTCLCSPMSPNAIKAPFDMVFKIKGFTP 2153
HVD L I+ F+A++ +GD G + LC+P++P ++ F I G
Sbjct: 1105 HVDVTLDAKATLQIQSPFFATANFGDDGTAFYIATLCAPLAPETMETGFQYYIHIHGINA 1164
Query: 2154 DAPMCRTINFTQRFGWFAVE--PTTSTGAIKLKIWPVSNHLESEDMKVTEYTNAFLQMCQ 2327
A +CR IN+ Q F WF +E T +TGA+ LKI +L S++++VT + NA MC
Sbjct: 1165 KAHLCREINYNQHFAWFMLEHLDTNTTGAVSLKIPARMANLTSKEVQVTNFVNALAIMCA 1224
Query: 2328 TSTMHFGSVIIHFSWTLFXXXXXXXXXXXXXXXXEGFGPEEENFRGHCRNFSIYEGKATV 2507
T+ MHFG +HFSW + G E+F G NF ++
Sbjct: 1225 TTGMHFGKCTLHFSWGWYRGKLADQSGAVSLQTGMGRAAVAEHFGGK-HNFCYPATSFSL 1283
Query: 2508 PLELGTFAGPTPLKKLDFKYRNWIRFTTPKGKSISSIFCAIEVLPGFSFYGRTGSP 2675
P + G+FAGP NWI P K I+S+ +IEV GF FYGR+ P
Sbjct: 1284 PFQFGSFAGPISCGGAPMAAENWIELIIPNMKWITSLTVSIEVHDGFQFYGRSAGP 1339
>ref|NP_620113.1| polyprotein [Beet ringspot virus] gi|130403|sp|P14547.1|POL2_BRSV
RecName: Full=RNA2 polyprotein; AltName: Full=P2;
Contains: RecName: Full=Protein 2A; Short=P2A; Contains:
RecName: Full=Movement protein; AltName: Full=2B-MP;
Contains: RecName: Full=Coat protein; AltName: Full=2C-CP
gi|60675|emb|CAA27694.1| polyprotein [Beet ringspot
virus] gi|225330|prf||1212324A ORF,RNA 2
Length = 1357
Score = 660 bits (1702), Expect = 0.0
Identities = 370/909 (40%), Positives = 526/909 (57%), Gaps = 14/909 (1%)
Frame = +3
Query: 45 DREAIEDQQDHLEDKQGGEILTTPQFVEILXXXXXXXXXXXFSDSTQGKLLRAKDFTLSK 224
D++ IEDQ DHLE+KQGGEI+TTP F+++L F++ ++G+L+RA D TLS+
Sbjct: 455 DQDEIEDQVDHLENKQGGEIVTTPAFIKMLKEKRKEVRGKEFAEGSEGRLVRASDLTLSR 514
Query: 225 HDVFLANSVLDGLRKSKVIQRFAGKCATSTKITVDLTNKEEVVRYGPKELASESFR---- 392
DVFL+ + + RKS ++Q F GK TK+ VDLTN +E+++Y KE+ S+S
Sbjct: 515 EDVFLSGGLFEKFRKSGIVQTFKGKDPKLTKVCVDLTNSQEIIKYPSKEMCSDSSGVHTG 574
Query: 393 QTFNVLNRPEYNALTKLAEAGWKEAKSVVLNLHIRSYLPQQMNAYAFCVIMWGHSSDAQE 572
Q F VLNRP YN L KLAE+GWKEAKSV LNLHIRSY+P YAFCVIMWGHSSDA+
Sbjct: 575 QVFTVLNRPLYNELNKLAESGWKEAKSVCLNLHIRSYVPVHTPLYAFCVIMWGHSSDAET 634
Query: 573 AALSGSYVYLGDGEATMLQLPLLCDYVGQNLQDFEAYKRSLVLSTVFPEFSGIADGKAMF 752
A+L G+ VYLGD EA +L+LPL+C Y+G +L+DF+AYKRSLVLSTVF SG+ G+ +F
Sbjct: 635 ASLCGAGVYLGDQEAAVLELPLVCSYLGNSLEDFDAYKRSLVLSTVFFGKSGLFAGQNVF 694
Query: 753 GITSIEFTEYLPTSHAGITHERDSWDAMLRNHT-EEKRRFLAGFNVVDTIEKGNGKGFSF 929
GIT++EFTEY+PTS+ GITHERDSW AMLRNH ++K RF+AGFNVVD +E+ +
Sbjct: 695 GITAVEFTEYMPTSYGGITHERDSWQAMLRNHQGKDKGRFIAGFNVVDALERDKEEPIKM 754
Query: 930 PDFNLKAVPRHQAVVRTFEDQDVAPILLKSKTMRVKTFGSFRAGNIPVNYLGATTSGAC- 1106
P+ +L+ VPR Q +VRTF + P+L KS++MR+++F SFR NIPV T+ A
Sbjct: 755 PNLDLEPVPRTQPIVRTFTGEGKQPLLNKSRSMRIQSFVSFRGSNIPVGRRIDNTAEAIN 814
Query: 1107 -----LPRHSISENAGYSMGDMKSAENFVFTQLISMPAASTKGNVLAGVDILANARTTMS 1271
S+S S ++K+ ++ F + I +PA T G VLA +I + T +
Sbjct: 815 YELGRASTSSVSSRLDESKCNLKAGGSYAFGETIELPATVTPGTVLAVFNIFDKIQETNT 874
Query: 1272 GFYVRWLQKGYVDTNLKLICHLPRAPFAGISFFVLIDGTGYLAKDAPTNFNEEEILSYPL 1451
+WL++GYV NL I HL F+GI+ + + D G + D T F E S+
Sbjct: 875 KVCSKWLEQGYVSQNLTAISHLAPNAFSGIAIWYIFDAYGKIPGDVTTTFELEMARSFDP 934
Query: 1452 HLVTTSDVSSYEFVLDWHRYIGQVPFAEENAFLRPTLFLVACVSSTLALSAKVEFYLEAQ 1631
H+ DVS+ +V+D+H+ GQ + P ++++A + LA S +F LE
Sbjct: 935 HVQVLRDVSTSTWVIDFHKICGQTLNFSGQGYCVPKIWVIAASTFQLARSTATKFRLEFY 994
Query: 1632 SVGEELPRTLAPSPVLSYPFQNSFLEDLDLFLPPKRLTLGERETTIIPLSF-AKSKKSGD 1808
+ GE+L R LA P LSYP + L DL+L L PK++ +G P+S AK + +
Sbjct: 995 TRGEKLVRGLAEQP-LSYPIEARHLTDLNLMLAPKQIAVGTYAMITFPVSLAAKLQSTSG 1053
Query: 1809 AVLYSHAAARLAHFQXXXXXXXXXXXXXXSQLVASKLRISMWSKEQHIQHQAMNVHVDTD 1988
YS+AA L+HF S V SKLRI++W A HVD +
Sbjct: 1054 RTAYSYAAGLLSHFLGVGGTIHFVVRTTSSAFVTSKLRIALWGTVPETDQLAQMPHVDVE 1113
Query: 1989 TGVAFNLPIKDAFYASSVYGDSGAVIQVTCLCSPMSPNAIKAPFDMVFKIKGFTPDAPMC 2168
V +L I+ F++++ +G+SG+ V+ LC+PM+P ++ + +IKG + +C
Sbjct: 1114 VNVDASLQIQSPFFSTANFGNSGSAFYVSTLCAPMAPETVETGSEYYIQIKGIEANPGLC 1173
Query: 2169 RTINFTQRFGWFAVE--PTTSTGAIKLKIWPVSNHLESEDMKVTEYTNAFLQMCQTSTMH 2342
R IN+ QRF W +E + IK+KI +L S+ +KVT + NA +C T+ MH
Sbjct: 1174 REINYKQRFAWCLLECLDNSKASPIKVKIPSRIGNLSSKHVKVTNFVNALAILCATTGMH 1233
Query: 2343 FGSVIIHFSWTLFXXXXXXXXXXXXXXXXEGFGPEEENFRGHCRNFSIYEGKATVPLELG 2522
G+ IHFSW +G G E+ G ++ +VP + G
Sbjct: 1234 HGNCTIHFSW--LWHPAELGKQLGRLKFVQGMGINNEHI-GDTMCYNSLSNTHSVPFQFG 1290
Query: 2523 TFAGPTPLKKLDFKYRNWIRFTTPKGKSISSIFCAIEVLPGFSFYGRTGSPRLCVASTTV 2702
+FAGP + NWI +P ++S+ +IEV GF FYGR+ P A TV
Sbjct: 1291 SFAGPITSGGKADEAENWIEIQSPDFSWVASLHVSIEVHEGFKFYGRSAGPLTIPA--TV 1348
Query: 2703 SPISDVSAS 2729
+ +S VS S
Sbjct: 1349 ADVSAVSGS 1357
>ref|NP_734051.1| 84 kDa protein [grapevine chrome mosaic virus]
Length = 810
Score = 409 bits (1051), Expect = e-111
Identities = 211/380 (55%), Positives = 275/380 (72%), Gaps = 18/380 (4%)
Frame = +3
Query: 45 DREAIEDQQDHLEDKQGGEILTTPQFVEILXXXXXXXXXXXFSDSTQGKLLRAKDFTLSK 224
D++ IEDQ DHLE+KQGGEI++TP F+++L F + ++G+L+R+KD LSK
Sbjct: 428 DQDEIEDQLDHLENKQGGEIVSTPSFIKMLKEKRKEVRGKEFEEGSEGRLVRSKDLELSK 487
Query: 225 HDVFLANSVLDGLRKSKVIQRFAGKCATSTKITVDLTNKEEVVRYGPKELASES----FR 392
D+FLA++++D ++++F TK+ VDLTN+EEV++Y KEL + S
Sbjct: 488 KDIFLAHTLMDKFHGMSIVKKFGKSDPKLTKVCVDLTNQEEVIKYPVKELQTTSEGVLSA 547
Query: 393 QTFNVLNRPEYNALTKLAEAGWKEAKSVVLNLHIRSYLPQQMNAYAFCVIMWGHSSDAQE 572
QTF VLNRP++ L +LAE GWKEAKSV LNLHIRSYLP + YAFCVIMWGHSS+A++
Sbjct: 548 QTFTVLNRPQFKELNRLAEVGWKEAKSVCLNLHIRSYLPVHLPVYAFCVIMWGHSSNAEQ 607
Query: 573 AALSGSYVYLGDGEATMLQLPLLCDYVGQNLQDFEAYKRSLVLSTVFPEFSGIADGKAMF 752
A+LSG+YVYLGD EA++LQLPLLC Y+G L+D EAYKRSLVLST F SG++ G+ MF
Sbjct: 608 ASLSGAYVYLGDQEASVLQLPLLCGYIGNALEDMEAYKRSLVLSTCFFGTSGLSPGQNMF 667
Query: 753 GITSIEFTEYLPTSHAGITHERDSWDAMLRNHT-EEKRRFLAGFNVVDTIEKGNGKGFSF 929
GIT++EFTEYLPTS+ GITHERDSW+ MLRNH +K+RF++GFNVVD +E G K F
Sbjct: 668 GITAVEFTEYLPTSYGGITHERDSWNQMLRNHQGVDKQRFISGFNVVDFVEAGKEKQLHF 727
Query: 930 PDFNLKAVPRHQAVVRTFEDQDVAPILLKSKTMRVKTFGSFRAGNIPVN----------- 1076
PDF+L+ VP+HQ +VRTF ++ P+L KS++MRVKTF SFRAGNIP+
Sbjct: 728 PDFDLQPVPKHQPIVRTF-GKEKQPLLNKSRSMRVKTFTSFRAGNIPIGRQIDNTAEAIN 786
Query: 1077 -YLG-ATTSGACLPRHSISE 1130
LG A+TS A PR SE
Sbjct: 787 FELGRASTSNAINPRLDTSE 806
>ref|NP_758855.1| movement protein [Tomato black ring virus]
Length = 832
Score = 400 bits (1027), Expect = e-108
Identities = 199/348 (57%), Positives = 262/348 (75%), Gaps = 5/348 (1%)
Frame = +3
Query: 45 DREAIEDQQDHLEDKQGGEILTTPQFVEILXXXXXXXXXXXFSDSTQGKLLRAKDFTLSK 224
D++ EDQ DHLE+KQGGEI++TP F+++L F + ++G+L+R+ D LSK
Sbjct: 452 DQDETEDQLDHLENKQGGEIVSTPSFIKMLKDKRKEVRGKEFVEGSEGRLVRSADLELSK 511
Query: 225 HDVFLANSVLDGLRKSKVIQRFAGKCATSTKITVDLTNKEEVVRYGPKELASES----FR 392
D+FLA++++D ++++F TK+ VDLTN+EEV+R+ KEL + S
Sbjct: 512 KDIFLAHTLMDKFHGMSIVRKFGKSDPKLTKVCVDLTNQEEVIRFPAKELQTTSEGVLSA 571
Query: 393 QTFNVLNRPEYNALTKLAEAGWKEAKSVVLNLHIRSYLPQQMNAYAFCVIMWGHSSDAQE 572
QTF VLNRP++ L KLAEAGWKEAKSV LNLHIRSYLP + YAFCVIMWGHSS+A++
Sbjct: 572 QTFTVLNRPQFKELNKLAEAGWKEAKSVCLNLHIRSYLPVHLPVYAFCVIMWGHSSNAEQ 631
Query: 573 AALSGSYVYLGDGEATMLQLPLLCDYVGQNLQDFEAYKRSLVLSTVFPEFSGIADGKAMF 752
A+LSG+YVYLGD EA++LQLPLLC Y+G L+D +AYKRSLVLST F SG++ G+ MF
Sbjct: 632 ASLSGAYVYLGDQEASVLQLPLLCGYIGNALEDMDAYKRSLVLSTCFFGTSGLSAGQNMF 691
Query: 753 GITSIEFTEYLPTSHAGITHERDSWDAMLRNHT-EEKRRFLAGFNVVDTIEKGNGKGFSF 929
GIT++EFTEYLPTS+ GITHERDSW+ MLRNH +K+RF++GFNVVD +E G K +F
Sbjct: 692 GITAVEFTEYLPTSYGGITHERDSWNQMLRNHQGVDKQRFISGFNVVDFVEAGKEKQLNF 751
Query: 930 PDFNLKAVPRHQAVVRTFEDQDVAPILLKSKTMRVKTFGSFRAGNIPV 1073
P+F+L+ VP+ Q VRTF ++ P+L KS++MRVKTF SFRAGNIPV
Sbjct: 752 PEFDLQPVPKSQPTVRTF-GEEKQPLLNKSRSMRVKTFSSFRAGNIPV 798
>ref|NP_733979.1| movement protein [Beet ringspot virus]
Length = 837
Score = 395 bits (1014), Expect = e-107
Identities = 195/348 (56%), Positives = 257/348 (73%), Gaps = 5/348 (1%)
Frame = +3
Query: 45 DREAIEDQQDHLEDKQGGEILTTPQFVEILXXXXXXXXXXXFSDSTQGKLLRAKDFTLSK 224
D++ IEDQ DHLE+KQGGEI+TTP F+++L F++ ++G+L+RA D TLS+
Sbjct: 455 DQDEIEDQVDHLENKQGGEIVTTPAFIKMLKEKRKEVRGKEFAEGSEGRLVRASDLTLSR 514
Query: 225 HDVFLANSVLDGLRKSKVIQRFAGKCATSTKITVDLTNKEEVVRYGPKELASESFR---- 392
DVFL+ + + RKS ++Q F GK TK+ VDLTN +E+++Y KE+ S+S
Sbjct: 515 EDVFLSGGLFEKFRKSGIVQTFKGKDPKLTKVCVDLTNSQEIIKYPSKEMCSDSSGVHTG 574
Query: 393 QTFNVLNRPEYNALTKLAEAGWKEAKSVVLNLHIRSYLPQQMNAYAFCVIMWGHSSDAQE 572
Q F VLNRP YN L KLAE+GWKEAKSV LNLHIRSY+P YAFCVIMWGHSSDA+
Sbjct: 575 QVFTVLNRPLYNELNKLAESGWKEAKSVCLNLHIRSYVPVHTPLYAFCVIMWGHSSDAET 634
Query: 573 AALSGSYVYLGDGEATMLQLPLLCDYVGQNLQDFEAYKRSLVLSTVFPEFSGIADGKAMF 752
A+L G+ VYLGD EA +L+LPL+C Y+G +L+DF+AYKRSLVLSTVF SG+ G+ +F
Sbjct: 635 ASLCGAGVYLGDQEAAVLELPLVCSYLGNSLEDFDAYKRSLVLSTVFFGKSGLFAGQNVF 694
Query: 753 GITSIEFTEYLPTSHAGITHERDSWDAMLRNHT-EEKRRFLAGFNVVDTIEKGNGKGFSF 929
GIT++EFTEY+PTS+ GITHERDSW AMLRNH ++K RF+AGFNVVD +E+ +
Sbjct: 695 GITAVEFTEYMPTSYGGITHERDSWQAMLRNHQGKDKGRFIAGFNVVDALERDKEEPIKM 754
Query: 930 PDFNLKAVPRHQAVVRTFEDQDVAPILLKSKTMRVKTFGSFRAGNIPV 1073
P+ +L+ VPR Q +VRTF + P+L KS++MR+++F SFR NIPV
Sbjct: 755 PNLDLEPVPRTQPIVRTFTGEGKQPLLNKSRSMRIQSFVSFRGSNIPV 802
>ref|NP_734052.1| coat protein [grapevine chrome mosaic virus]
Length = 514
Score = 287 bits (734), Expect = 2e-74
Identities = 168/509 (33%), Positives = 255/509 (50%), Gaps = 8/509 (1%)
Frame = +3
Query: 1173 FVFTQLISMPAASTKGNVLAGVDILANARTTMSGFYVRWLQKGYVDTNLKLICHLPRAPF 1352
F F I +P A T+G VLA +DI + S V+W+Q GYV+ NL I HL + F
Sbjct: 5 FAFIHTIDLPTAVTEGQVLAKIDIFKKIQDAKSMVCVQWMQAGYVNKNLTFISHLAPSQF 64
Query: 1353 AGISFFVLIDGTGYLAKDAPTNFNEEEILSYPLHLVTTSDVSSYEFVLDWHRYIGQVPFA 1532
G++ + + D G + D T+ E S H+ D + + +D+H+ GQ
Sbjct: 65 CGVAIWYIFDAYGKIPSDVTTSLELEIARSLCPHVHVLRDSKTSVWTIDFHKICGQSLNF 124
Query: 1533 EENAFLRPTLFLVACVSSTLALSAKVEFYLEAQSVGEELPRTLAPSPVLSYPFQNSFLED 1712
F +PTL+++A ++ L SA+V + LEA + G+E+ LA +++YP L+D
Sbjct: 125 SGRGFSKPTLWVIAASTAQLPWSAQVTYRLEALAQGDEIAHGLATRSIVTYPISLEHLKD 184
Query: 1713 LDLFLPPKRLTLGERETTIIPLSFA-KSKKSGDAVLYSHAAARLAHFQXXXXXXXXXXXX 1889
+++ LPP+++ +G + PLSFA + K S + YS+AA L+HF
Sbjct: 185 IEIMLPPRQMAIGNAGSINFPLSFAVQQKSSSGRIAYSYAAGLLSHFLGIGGTIHFKIQC 244
Query: 1890 XXSQLVASKLRISMWSKEQHIQHQAMNVHVDTDTGVAFNLPIKDAFYASSVYGDSGAVIQ 2069
S V ++LR+++W ++ + HVD D V +L I+ FYA++ +GDSGA
Sbjct: 245 TSSAFVTARLRVALWGDTITLEQLSQMPHVDCDVDVVSSLKIQSPFYATANFGDSGARFW 304
Query: 2070 VTCLCSPMSPNAIKAPFDMVFKIKGFTPDAPMCRTINFTQRFGWFAV----EPTTSTGAI 2237
VT + SPM+P +++ + +I G D PMCR IN+ QRF WF + +P S +
Sbjct: 305 VTPMSSPMAPETMESKLEYYIQILGIDADPPMCRQINYDQRFAWFTLLRPPDPKLSK-IL 363
Query: 2238 KLKIWPVSNHLESEDMKVTEYTNAFLQMCQTSTMHFGSVIIHFSWTLFXXXXXXXXXXXX 2417
KL + ++ ++ VT Y NAF MC T+ MH G I+HFSWTL
Sbjct: 364 KLTLPSRVCNIAYKEATVTNYVNAFAIMCATTGMHAGKCILHFSWTL-NKGTSFKDLQGH 422
Query: 2418 XXXXEGFGPEEENFRGHCRNFSI---YEGKATVPLELGTFAGPTPLKKLDFKYRNWIRFT 2588
G G + H F + VP E G+FAGP F NW+R
Sbjct: 423 ISFYSGMG--DSTIGEHHGEFHLGGPLSSSLAVPFEFGSFAGPVTSGGTPFTSENWLRVE 480
Query: 2589 TPKGKSISSIFCAIEVLPGFSFYGRTGSP 2675
T ++S+ I+VLPGF FYGR+ P
Sbjct: 481 TAHWDWLTSLTVDIQVLPGFRFYGRSAGP 509
>ref|NP_758856.1| coat protein [Tomato black ring virus]
Length = 511
Score = 277 bits (708), Expect = 2e-71
Identities = 160/505 (31%), Positives = 246/505 (48%), Gaps = 3/505 (0%)
Frame = +3
Query: 1170 NFVFTQLISMPAASTKGNVLAGVDILANARTTMSGFYVRWLQKGYVDTNLKLICHLPRAP 1349
+F + I++PA S G++LA +D+++ + T + WL GYV NL+ + HL
Sbjct: 4 DFACGETITLPATSASGSILAKIDLISLIKNTNTRVCSEWLMDGYVSQNLRAVSHLAPNS 63
Query: 1350 FAGISFFVLIDGTGYLAKDAPTNFNEEEILSYPLHLVTTSDVSSYEFVLDWHRYIGQVPF 1529
F+GIS + + D G + D T E H+ T D ++ +++D+H+ GQ
Sbjct: 64 FSGISIWYIFDAYGKIPADISTTIELEMAKCLSPHVQTLRDATTSSWIIDFHKMCGQTLN 123
Query: 1530 AEENAFLRPTLFLVACVSSTLALSAKVEFYLEAQSVGEELPRTLAPSPVLSYPFQNSFLE 1709
F +PTL++V LA SA+ +F LE + GE L R L+ +P L+YP ++ LE
Sbjct: 124 FSGPGFCKPTLYIVVASEFQLARSAETKFRLEFYATGERLVRGLSENP-LTYPIESRHLE 182
Query: 1710 DLDLFLPPKRLTLGERETTIIPLSFA-KSKKSGDAVLYSHAAARLAHFQXXXXXXXXXXX 1886
DLDL L + +G T +P+S A + + YS+AA L+HF
Sbjct: 183 DLDLILKSGSIAVGTYTMTKVPVSLAMRIDSAAKRQAYSYAAGILSHFLGVGGEIIFSVH 242
Query: 1887 XXXSQLVASKLRISMWSKEQHIQHQAMNVHVDTDTGVAFNLPIKDAFYASSVYGDSGAVI 2066
S V+ LRI++W A HVD L I+ F+A++ +GD G
Sbjct: 243 STASTFVSCSLRIALWGTVPTTDELAQIPHVDVTLDTKATLQIQSPFFATANFGDDGTAF 302
Query: 2067 QVTCLCSPMSPNAIKAPFDMVFKIKGFTPDAPMCRTINFTQRFGWFAVE--PTTSTGAIK 2240
++ LC+P++P ++ F I G A +CR IN+ Q F WF +E T +TG +
Sbjct: 303 YISTLCAPLAPETMETGFQYYIHIHGIKVKANLCREINYNQHFAWFMLEHLDTNTTGMVS 362
Query: 2241 LKIWPVSNHLESEDMKVTEYTNAFLQMCQTSTMHFGSVIIHFSWTLFXXXXXXXXXXXXX 2420
LKI +L S+++++T + NA MC T+ MHFG +HFSW F
Sbjct: 363 LKIPARMANLTSKEVQITNFVNALAIMCATTGMHFGKCTLHFSWNWFRGKLADQSGVFSI 422
Query: 2421 XXXEGFGPEEENFRGHCRNFSIYEGKATVPLELGTFAGPTPLKKLDFKYRNWIRFTTPKG 2600
G E+F G +F+ ++P + G+FAGP NW+R P
Sbjct: 423 QTGMGKSTVAEHFGGR-HSFNYPATNFSLPFQFGSFAGPISCGGEPMAAENWVRLQIPNM 481
Query: 2601 KSISSIFCAIEVLPGFSFYGRTGSP 2675
K I+S+ +IEV GF FYGR+ P
Sbjct: 482 KWITSLTVSIEVHDGFQFYGRSAGP 506
>gb|AHC03351.1| coat protein, partial [Tomato black ring virus]
Length = 511
Score = 274 bits (700), Expect = 2e-70
Identities = 161/506 (31%), Positives = 246/506 (48%), Gaps = 4/506 (0%)
Frame = +3
Query: 1170 NFVFTQLISMPAASTKGNVLAGVDILANARTTMSGFYVRWLQKGYVDTNLKLICHLPRAP 1349
+F + I++PA S G++LA +D+++ + T + WL GYV NL+ + HL
Sbjct: 4 DFACGETITLPATSASGSILAKIDLISLIKNTNTRVCSEWLMDGYVSQNLRAVSHLAPNS 63
Query: 1350 FAGISFFVLIDGTGYLAKDAPTNFNEEEILSYPLHLVTTSDVSSYEFVLDWHRYIGQVPF 1529
F+GIS + + D G + D T E H+ T D ++ +V+D+H+ GQ
Sbjct: 64 FSGISIWYIFDAYGKIPADISTTIELEMAKCLSPHVQTLRDATTSSWVIDFHKMCGQTLN 123
Query: 1530 AEENAFLRPTLFLVACVSSTLALSAKVEFYLEAQSVGEELPRTLAPSPVLSYPFQNSFLE 1709
F +PTL++V LA SA+ +F LE + GE L R L+ +P L+YP ++ LE
Sbjct: 124 FSGPGFCKPTLYIVVASEFQLARSAETKFRLEFYATGERLVRGLSENP-LTYPIESRHLE 182
Query: 1710 DLDLFLPPKRLTLGERETTIIPLSFA-KSKKSGDAVLYSHAAARLAHFQXXXXXXXXXXX 1886
+L+L L + +G +P+S A + + YS+AA L+HF
Sbjct: 183 ELELILKSGSIAVGTYTMPKVPVSLAMRIDSAAKRQAYSYAAGILSHFLGVGGDIIFSVH 242
Query: 1887 XXXSQLVASKLRISMWSKEQHIQHQAMNVHVDTDTGVAFNLPIKDAFYASSVYGDSGAVI 2066
S V+ LRI++W A HVD L I+ F+A++ +GD G
Sbjct: 243 STASTFVSCSLRIALWGTVPTTDELAQVPHVDVTLDTKATLQIQSPFFATASFGDDGTAF 302
Query: 2067 QVTCLCSPMSPNAIKAPFDMVFKIKGFTPDAPMCRTINFTQRFGWFAVE--PTTSTGAIK 2240
V+ LC+P++P ++ F I G A +CR +N+ Q F WF +E T +TGA+
Sbjct: 303 YVSTLCAPLAPETMETGFQYYIHIHGVKVKANLCREVNYNQHFAWFMLEHLDTNTTGAVS 362
Query: 2241 LKIWPVSNHLESEDMKVTEYTNAFLQMCQTSTMHFGSVIIHFSWTLFXXXXXXXXXXXXX 2420
LKI +L S+++++T + NA MC T+ MHFG +HFSW+ +
Sbjct: 363 LKIPARMANLTSKEVQITNFVNALAIMCATTGMHFGKCTLHFSWSWYRGKLADQSGVVSV 422
Query: 2421 XXXEGFGPEEENFRG-HCRNFSIYEGKATVPLELGTFAGPTPLKKLDFKYRNWIRFTTPK 2597
G E+F G HC FS +P + G+FAGP NWI P
Sbjct: 423 QTGMGKSTVAEHFGGRHC--FSYPATNFNLPFQFGSFAGPISCGGEPMAAENWIELVIPN 480
Query: 2598 GKSISSIFCAIEVLPGFSFYGRTGSP 2675
K I+S+ +IEV GF FYGR+ P
Sbjct: 481 MKWITSLTVSIEVHDGFQFYGRSAGP 506
>gb|AHC03348.1| coat protein, partial [Tomato black ring virus]
Length = 511
Score = 274 bits (700), Expect = 2e-70
Identities = 162/506 (32%), Positives = 246/506 (48%), Gaps = 4/506 (0%)
Frame = +3
Query: 1170 NFVFTQLISMPAASTKGNVLAGVDILANARTTMSGFYVRWLQKGYVDTNLKLICHLPRAP 1349
+F + I++PA S G++LA +D+++ + T + WL GYV NL+ + HL
Sbjct: 4 DFACGETITLPATSASGSILAKIDLISLIKNTNTRVCSEWLMDGYVSQNLRAVSHLAPNS 63
Query: 1350 FAGISFFVLIDGTGYLAKDAPTNFNEEEILSYPLHLVTTSDVSSYEFVLDWHRYIGQVPF 1529
F+GIS + + D G + D T E H+ T D ++ +++D+H+ GQ
Sbjct: 64 FSGISIWYIFDAYGKIPADISTTIELEMAKCLSPHVQTLRDATTSSWIIDFHKMCGQTLN 123
Query: 1530 AEENAFLRPTLFLVACVSSTLALSAKVEFYLEAQSVGEELPRTLAPSPVLSYPFQNSFLE 1709
F +PTL++V LA SA+ +F LE + GE L R L+ +P L+YP ++ LE
Sbjct: 124 FSGPGFCKPTLYIVVASEFQLARSAETKFRLEFYATGERLVRGLSENP-LTYPIESRHLE 182
Query: 1710 DLDLFLPPKRLTLGERETTIIPLSFA-KSKKSGDAVLYSHAAARLAHFQXXXXXXXXXXX 1886
+L+L L + +G +P+S A + + YS+AA L+HF
Sbjct: 183 ELELILKSGSVAVGTYTMPKVPVSLAMRIDSAAKRQAYSYAAGILSHFLGVGGDIIFSVH 242
Query: 1887 XXXSQLVASKLRISMWSKEQHIQHQAMNVHVDTDTGVAFNLPIKDAFYASSVYGDSGAVI 2066
S V+ LRI++W A HVD L I+ F+A++ +GD G
Sbjct: 243 STASTFVSCSLRIALWGTIPTTDELAQVPHVDVTLDTKATLQIQSPFFATANFGDDGTAF 302
Query: 2067 QVTCLCSPMSPNAIKAPFDMVFKIKGFTPDAPMCRTINFTQRFGWFAVE--PTTSTGAIK 2240
V+ LC+P++P ++ F I G A +CR IN+ Q F WF +E T +TGA+
Sbjct: 303 YVSTLCAPLAPETMETGFQYYIHIHGVKVKANLCREINYNQHFAWFMLEHLDTNTTGAVS 362
Query: 2241 LKIWPVSNHLESEDMKVTEYTNAFLQMCQTSTMHFGSVIIHFSWTLFXXXXXXXXXXXXX 2420
LKI +L S+++++T + NA MC T+ MHFG +HFSW+ F
Sbjct: 363 LKIPARMANLTSKEVQITNFVNALAIMCATTGMHFGKCTLHFSWSWFRGKLADQSGVFSV 422
Query: 2421 XXXEGFGPEEENFRG-HCRNFSIYEGKATVPLELGTFAGPTPLKKLDFKYRNWIRFTTPK 2597
G E+F G HC FS +P + G+FAGP NWI P
Sbjct: 423 QTGMGKSTVAEHFGGRHC--FSYPATNFNLPFQFGSFAGPLSCGGEPMAAENWIELVLPN 480
Query: 2598 GKSISSIFCAIEVLPGFSFYGRTGSP 2675
K I+S+ +IEV GF FYGR+ P
Sbjct: 481 MKWITSLTVSIEVHDGFQFYGRSAGP 506
>ref|NP_733980.1| capsid protein [Beet ringspot virus]
Length = 520
Score = 273 bits (698), Expect = 3e-70
Identities = 169/523 (32%), Positives = 258/523 (49%), Gaps = 3/523 (0%)
Frame = +3
Query: 1170 NFVFTQLISMPAASTKGNVLAGVDILANARTTMSGFYVRWLQKGYVDTNLKLICHLPRAP 1349
++ F + I +PA T G VLA +I + T + +WL++GYV NL I HL
Sbjct: 4 SYAFGETIELPATVTPGTVLAVFNIFDKIQETNTKVCSKWLEQGYVSQNLTAISHLAPNA 63
Query: 1350 FAGISFFVLIDGTGYLAKDAPTNFNEEEILSYPLHLVTTSDVSSYEFVLDWHRYIGQVPF 1529
F+GI+ + + D G + D T F E S+ H+ DVS+ +V+D+H+ GQ
Sbjct: 64 FSGIAIWYIFDAYGKIPGDVTTTFELEMARSFDPHVQVLRDVSTSTWVIDFHKICGQTLN 123
Query: 1530 AEENAFLRPTLFLVACVSSTLALSAKVEFYLEAQSVGEELPRTLAPSPVLSYPFQNSFLE 1709
+ P ++++A + LA S +F LE + GE+L R LA P LSYP + L
Sbjct: 124 FSGQGYCVPKIWVIAASTFQLARSTATKFRLEFYTRGEKLVRGLAEQP-LSYPIEARHLT 182
Query: 1710 DLDLFLPPKRLTLGERETTIIPLSF-AKSKKSGDAVLYSHAAARLAHFQXXXXXXXXXXX 1886
DL+L L PK++ +G P+S AK + + YS+AA L+HF
Sbjct: 183 DLNLMLAPKQIAVGTYAMITFPVSLAAKLQSTSGRTAYSYAAGLLSHFLGVGGTIHFVVR 242
Query: 1887 XXXSQLVASKLRISMWSKEQHIQHQAMNVHVDTDTGVAFNLPIKDAFYASSVYGDSGAVI 2066
S V SKLRI++W A HVD + V +L I+ F++++ +G+SG+
Sbjct: 243 TTSSAFVTSKLRIALWGTVPETDQLAQMPHVDVEVNVDASLQIQSPFFSTANFGNSGSAF 302
Query: 2067 QVTCLCSPMSPNAIKAPFDMVFKIKGFTPDAPMCRTINFTQRFGWFAVE--PTTSTGAIK 2240
V+ LC+PM+P ++ + +IKG + +CR IN+ QRF W +E + IK
Sbjct: 303 YVSTLCAPMAPETVETGSEYYIQIKGIEANPGLCREINYKQRFAWCLLECLDNSKASPIK 362
Query: 2241 LKIWPVSNHLESEDMKVTEYTNAFLQMCQTSTMHFGSVIIHFSWTLFXXXXXXXXXXXXX 2420
+KI +L S+ +KVT + NA +C T+ MH G+ IHFSW
Sbjct: 363 VKIPSRIGNLSSKHVKVTNFVNALAILCATTGMHHGNCTIHFSW--LWHPAELGKQLGRL 420
Query: 2421 XXXEGFGPEEENFRGHCRNFSIYEGKATVPLELGTFAGPTPLKKLDFKYRNWIRFTTPKG 2600
+G G E+ G ++ +VP + G+FAGP + NWI +P
Sbjct: 421 KFVQGMGINNEHI-GDTMCYNSLSNTHSVPFQFGSFAGPITSGGKADEAENWIEIQSPDF 479
Query: 2601 KSISSIFCAIEVLPGFSFYGRTGSPRLCVASTTVSPISDVSAS 2729
++S+ +IEV GF FYGR+ P A TV+ +S VS S
Sbjct: 480 SWVASLHVSIEVHEGFKFYGRSAGPLTIPA--TVADVSAVSGS 520
>gb|AAB22205.1| coat protein [nepovirus grapevine chrome mosaic virus GCMV, Peptide,
512 aa]
Length = 512
Score = 273 bits (697), Expect = 4e-70
Identities = 166/509 (32%), Positives = 254/509 (49%), Gaps = 8/509 (1%)
Frame = +3
Query: 1173 FVFTQLISMPAASTKGNVLAGVDILANARTTMSGFYVRWLQKGYVDTNLKLICHLPRAPF 1352
F F I +P A T+G VLA +DI + S V+W+Q GYV+ NL I HL + F
Sbjct: 5 FAFIHTIDLPTAVTEGQVLAKIDIFKKIQDAKSMVCVQWMQAGYVNKNLTFISHLAPSQF 64
Query: 1353 AGISFFVLIDGTGYLAKDAPTNFNEEEILSYPLHLVTTSDVSSYEFVLDWHRYIGQVPFA 1532
G++ + + D G + D T+ E S H+ D + + +D+H+ GQ
Sbjct: 65 CGVAIWYIFDAYGKIPSDVTTSLELEIARSLCPHVHVLRDSKTSVWTIDFHKICGQSLNF 124
Query: 1533 EENAFLRPTLFLVACVSSTLALSAKVEFYLEAQSVGEELPRTLAPSPVLSYPFQNSFLED 1712
F +PTL+++A ++ L SA+V + LEA + +E+ LA +++YP L+D
Sbjct: 125 SGRGFSKPTLWVIAASTAQLPWSAQVTYRLEALAQDDEIAHGLATRSIVTYPISLEHLKD 184
Query: 1713 LDLFLPPKRLTLGERETTIIPLSFA-KSKKSGDAVLYSHAAARLAHFQXXXXXXXXXXXX 1889
+++ +PP+++ +G +I LSFA + K S + YS+AA L+HF
Sbjct: 185 IEILMPPRQMAIG-NAGSINFLSFAVQQKSSSGRIAYSYAAGLLSHF-GIGGTIHFKIQC 242
Query: 1890 XXSQLVASKLRISMWSKEQHIQHQAMNVHVDTDTGVAFNLPIKDAFYASSVYGDSGAVIQ 2069
S V ++LR+++W ++ + HVD D V +L I+ FYA++ +GDSGA
Sbjct: 243 TSSAFVTARLRVALWGDTITLEQLSQMPHVDCDVDVVSSLKIQSPFYATANFGDSGARFW 302
Query: 2070 VTCLCSPMSPNAIKAPFDMVFKIKGFTPDAPMCRTINFTQRFGWFAV----EPTTSTGAI 2237
VT + SPM+P +++ + +I G D PMCR IN+ QRF WF + +P S +
Sbjct: 303 VTPMSSPMAPETMESKLEYYIQILGIDADPPMCRQINYDQRFAWFTLLRPPDPKLSK-IL 361
Query: 2238 KLKIWPVSNHLESEDMKVTEYTNAFLQMCQTSTMHFGSVIIHFSWTLFXXXXXXXXXXXX 2417
KL + ++ ++ VT Y NAF MC T+ MH G I+HFSWTL
Sbjct: 362 KLTLPSRVCNIAYKEATVTNYVNAFAIMCATTGMHAGKCILHFSWTL-NKGTLFKDLQGH 420
Query: 2418 XXXXEGFGPEEENFRGHCRNFSI---YEGKATVPLELGTFAGPTPLKKLDFKYRNWIRFT 2588
G G + H F + VP E G+FAGP F NW+R
Sbjct: 421 ISFYSGMG--DSTIGEHHGEFHLGGPLSSSLAVPFEFGSFAGPVTSGGTPFTSENWLRVE 478
Query: 2589 TPKGKSISSIFCAIEVLPGFSFYGRTGSP 2675
T ++S+ I+VLPGF FYGR+ P
Sbjct: 479 TAHWDWLTSLTVDIQVLPGFRFYGRSAGP 507
>gb|AHC03345.1| coat protein, partial [Tomato black ring virus]
Length = 511
Score = 272 bits (696), Expect = 6e-70
Identities = 159/506 (31%), Positives = 244/506 (48%), Gaps = 4/506 (0%)
Frame = +3
Query: 1170 NFVFTQLISMPAASTKGNVLAGVDILANARTTMSGFYVRWLQKGYVDTNLKLICHLPRAP 1349
+F + I +PA S G++LA +D+++ + T + WL GYV NL+ + HL
Sbjct: 4 DFACGETIILPATSASGSILAKIDLISLIKNTNTRVCSEWLMDGYVSQNLRAVSHLAPNS 63
Query: 1350 FAGISFFVLIDGTGYLAKDAPTNFNEEEILSYPLHLVTTSDVSSYEFVLDWHRYIGQVPF 1529
F+GIS + + D G + D T E H+ T D ++ +++D+H+ GQ
Sbjct: 64 FSGISIWYIFDAYGKIPADISTTIELEMAKCLSAHVQTLRDATTSSWIIDFHKMCGQTLN 123
Query: 1530 AEENAFLRPTLFLVACVSSTLALSAKVEFYLEAQSVGEELPRTLAPSPVLSYPFQNSFLE 1709
F +PTL++V LA SA+ +F LE + GE L R L+ +P L+YP ++ LE
Sbjct: 124 FSGPGFCKPTLYVVVASEFQLARSAETKFRLEFYATGERLVRGLSENP-LTYPIESRHLE 182
Query: 1710 DLDLFLPPKRLTLGERETTIIPLSFA-KSKKSGDAVLYSHAAARLAHFQXXXXXXXXXXX 1886
+L+L L + +G +P+S A + + YS+AA L+HF
Sbjct: 183 ELELILKSGSVAVGTYTMPKVPVSLAMRIDSAAKRQAYSYAAGILSHFLGVGGDIIFSVH 242
Query: 1887 XXXSQLVASKLRISMWSKEQHIQHQAMNVHVDTDTGVAFNLPIKDAFYASSVYGDSGAVI 2066
S V+ LRI++W A HVD L I+ F+A++ +GD G
Sbjct: 243 STASTFVSCSLRIALWGTVPTTDELAQVPHVDVTLDTKATLQIQSPFFATANFGDDGTAF 302
Query: 2067 QVTCLCSPMSPNAIKAPFDMVFKIKGFTPDAPMCRTINFTQRFGWFAVE--PTTSTGAIK 2240
+ LC+P++P ++ F I G A +CR IN+ Q F WF +E T +TGA+
Sbjct: 303 YIATLCAPLAPETMETGFQYYIHIHGVKVKANLCREINYNQHFAWFMLEHLDTNTTGAVS 362
Query: 2241 LKIWPVSNHLESEDMKVTEYTNAFLQMCQTSTMHFGSVIIHFSWTLFXXXXXXXXXXXXX 2420
LKI +L S+++++T + NA MC T+ MHFG +HFSW+ F
Sbjct: 363 LKIPARMANLTSKEVQITNFVNALAIMCATTGMHFGKCTLHFSWSWFRGKLADQSGVFSV 422
Query: 2421 XXXEGFGPEEENFRG-HCRNFSIYEGKATVPLELGTFAGPTPLKKLDFKYRNWIRFTTPK 2597
G E+F G HC N+ +P + G+FAGP NW+ P
Sbjct: 423 QTGMGKSTVAEHFGGRHCFNYP--ATNFNLPFQFGSFAGPVSCGGEPMAAENWVELVIPN 480
Query: 2598 GKSISSIFCAIEVLPGFSFYGRTGSP 2675
K I+S+ +IEV GF FYGR+ P
Sbjct: 481 MKWITSLTVSIEVHDGFQFYGRSAGP 506