BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon26_contig00008328
         (2304 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020258675.1| protein RNA-directed DNA methylation 3, part...   905   0.0  
gb|ONK75729.1| uncharacterized protein A4U43_C03F19930 [Asparagu...   898   0.0  
ref|XP_010933206.1| PREDICTED: protein RNA-directed DNA methylat...   619   0.0  
ref|XP_010933194.1| PREDICTED: protein RNA-directed DNA methylat...   619   0.0  
ref|XP_010933212.1| PREDICTED: protein RNA-directed DNA methylat...   617   0.0  
ref|XP_010933199.1| PREDICTED: protein RNA-directed DNA methylat...   617   0.0  
ref|XP_008794002.1| PREDICTED: protein RNA-directed DNA methylat...   610   0.0  
ref|XP_020091605.1| protein RNA-directed DNA methylation 3 isofo...   585   0.0  
ref|XP_020091606.1| protein RNA-directed DNA methylation 3 isofo...   585   0.0  
ref|XP_020091604.1| protein RNA-directed DNA methylation 3 isofo...   585   0.0  
ref|XP_020091602.1| protein RNA-directed DNA methylation 3 isofo...   585   0.0  
gb|AQK94717.1| Protein RNA-directed DNA methylation 3 [Zea mays]      556   0.0  
gb|OAY66311.1| Protein RNA-directed DNA methylation 3 [Ananas co...   577   0.0  
ref|XP_004961584.1| protein RNA-directed DNA methylation 3 [Seta...   576   0.0  
gb|PAN18741.1| hypothetical protein PAHAL_C02415 [Panicum hallii]     569   e-180
gb|PAN18742.1| hypothetical protein PAHAL_C02415 [Panicum hallii]     569   e-180
gb|AQK94722.1| Protein RNA-directed DNA methylation 3 [Zea mays]      550   e-180
gb|AQK94721.1| Protein RNA-directed DNA methylation 3 [Zea mays]      550   e-178
ref|XP_008656431.1| protein RNA-directed DNA methylation 3 isofo...   556   e-176
gb|AQK87074.1| Protein RNA-directed DNA methylation 3 [Zea mays]      545   e-173

>ref|XP_020258675.1| protein RNA-directed DNA methylation 3, partial [Asparagus
            officinalis]
          Length = 1734

 Score =  905 bits (2340), Expect = 0.0
 Identities = 484/709 (68%), Positives = 531/709 (74%), Gaps = 59/709 (8%)
 Frame = -1

Query: 2304 KACDVVEACKGFFNIYATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQ 2125
            KACDVVEACKGFFNIY+TRMGLVP+ EIPHLLS RNK C +SKGTWVRMK+GNYKGDLGQ
Sbjct: 166  KACDVVEACKGFFNIYSTRMGLVPNTEIPHLLSIRNKACILSKGTWVRMKSGNYKGDLGQ 225

Query: 2124 VVDYDDARKRATIKLVPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIR 1945
            VVDYDD RK+ATIKLVPRIDLQAIAKK+GGGVSLKEA VP PRLISS ELE FRSHIEIR
Sbjct: 226  VVDYDDMRKKATIKLVPRIDLQAIAKKFGGGVSLKEAAVPSPRLISSHELEQFRSHIEIR 285

Query: 1944 RDRHTGEYFEILDGLMLKDGYLYKKVSIASIVFWGVQPSKDELLKFTEMSKAEEEDVSWL 1765
            RDRH+GE FEILDGLMLKDGYLYKKVSIASIV+WGV+PSKDELLKFTEMSK EEEDVSWL
Sbjct: 286  RDRHSGECFEILDGLMLKDGYLYKKVSIASIVYWGVEPSKDELLKFTEMSKPEEEDVSWL 345

Query: 1764 SSVYNARKKMKSSETADVKGASEQGNGFNLHDLVLFGRKGFGVIIDLGKDG-IKILKGDT 1588
            SSVYN RKK+K S+ +D+KG+SE+GN FNLHDLVLFGRK FGVIID+GKDG +K+L+GD 
Sbjct: 346  SSVYNVRKKIKPSKDSDLKGSSEKGNSFNLHDLVLFGRKAFGVIIDMGKDGTMKVLRGDK 405

Query: 1587 AGQEVMTIKFEDIKSRCVDKMFTASDCHRKTIYINDSVKVSDGPLEGREGTVRHMYKGTL 1408
             GQEV+T+K E IKS+CVDKMFTASD HRKTI IND +KV +GPLEGR+GT  HMYKGTL
Sbjct: 406  EGQEVITVKAEAIKSQCVDKMFTASDRHRKTICINDIIKVLEGPLEGRQGTACHMYKGTL 465

Query: 1407 FIYDENQEENSGLFCAKSDLCENSTPPKDSSFRKGGNKSSSSFNQSPVRSCEQEDSSHTF 1228
            FIYDE+QE NSG+FC KSDLCE  TP KDS F KG NK+SSSF+Q PV S EQEDSS TF
Sbjct: 466  FIYDESQEGNSGIFCTKSDLCEKITPAKDS-FGKG-NKASSSFSQDPVISSEQEDSSCTF 523

Query: 1227 -RNRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQFLSI 1051
             RNRR ESNQ FS+GQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITV+EQ LS 
Sbjct: 524  SRNRRRESNQIFSVGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVDEQLLSD 583

Query: 1050 PNIKRDFAAEMPSDIFGTQERFTGGLSGNGEQTVVTSSWDGASSSWQALSTSTL-FGNNN 874
            PN+KRD A               GGLSGNGEQT+  SSWDG SSSWQ LSTS   F  NN
Sbjct: 584  PNLKRDTAG--------------GGLSGNGEQTLGASSWDGGSSSWQDLSTSAFSFSANN 629

Query: 873  DQKTEQEQGADPWGSKVSLAAGDREQGADPWGSHASIVAGDHEGS-DPWGSKLVPVATDH 697
            DQK+ QEQGADPW  +VS  AGD+EQ +DPW S ASI AG   GS DPWGSK    A D 
Sbjct: 630  DQKSGQEQGADPWAGRVSHVAGDQEQ-SDPWVSKASITAGADGGSADPWGSKASLAARDD 688

Query: 696  KQGADPWGSNNSISAGDCEQGADPWGCNKSISAG-------------------------- 595
               ADPWGS  S+ AGD    ADPWG   S++AG                          
Sbjct: 689  GGSADPWGSKASLPAGD-GGSADPWGSKTSLAAGAEGSSADPWGSKASLAAREGGSADPS 747

Query: 594  --------------------------DQGGTDPWGSKLVPVASGQRQGADPWGRNISGGS 493
                                      D G  DPWG+KL P A  Q QG DPWG +I+G +
Sbjct: 748  GNKASLAAGDGGSADPWGSKQTPGTRDGGSADPWGTKLTPGAREQEQGVDPWGSSIAGTT 807

Query: 492  T--DKEERADPWGGKTALGDSSHSDKAFDSWVKVSGTSGEMNS-WNKSE 355
            T  + + RADPWGGKT  G SSHSDK FDSW K S  SGE NS WNK+E
Sbjct: 808  TADNNKPRADPWGGKTTHGGSSHSDKTFDSWAKASTASGEENSVWNKTE 856



 Score = 95.5 bits (236), Expect(2) = 2e-38
 Identities = 64/186 (34%), Positives = 85/186 (45%), Gaps = 14/186 (7%)
 Frame = -1

Query: 873  DQKTEQEQGADPWGSKVSLAAGDREQGADPWGSHASIVAGDHEGSDPWGSKLVPVATDHK 694
            D + +   G   WGS        R +G   WG +    AGD +  D  G       +   
Sbjct: 1235 DGENQDGSGDLGWGS-------GRGRG---WGRYGGRGAGDGDNQDRQGDYGGGWESGRG 1284

Query: 693  QGADPWGSNNSISAGDCE----------QGADPWGCNKSISAGDQ---GGTDPWGSKLVP 553
             G   +G        D +          +G   WG + + +  +Q   G    WGS    
Sbjct: 1285 GGRGRYGERGGTGNEDNQDRTGGSWGSGRGRGQWGGSGTATEENQDKSGEFGGWGSGKSW 1344

Query: 552  VASGQRQGADPWGRNISGGSTDKEERADPWGGKTALGDSSHSDKAFDSWVKVSGTSGEMN 373
                Q +GA PWG +++G STDKE+ ADPWG K    +S+HSDKAFDSWVK S TSGE N
Sbjct: 1345 NQKEQERGAGPWGSSVAGASTDKEQNADPWGSKATPSESNHSDKAFDSWVKASSTSGERN 1404

Query: 372  S-WNKS 358
            S W K+
Sbjct: 1405 SLWAKT 1410



 Score = 95.1 bits (235), Expect(2) = 2e-38
 Identities = 48/87 (55%), Positives = 58/87 (66%), Gaps = 1/87 (1%)
 Frame = -2

Query: 281  DHKQGADPWGSKVSVTARDDTQGADPWGSKPALSAEDQGGADPWASKMAAGAR-EQEQGG 105
            D  +GA  W S  S   RD TQGADPWGSK + +A+D+G ADPW  K+AA AR +  QG 
Sbjct: 1441 DQGEGAATWASGSS---RDKTQGADPWGSKASPAAKDKGEADPWGGKLAASARADPGQGA 1497

Query: 104  DPWGNKMATTSRAEQEQGADPWGSNVA 24
            D WG+K A  SRA++EQ AD WGS  A
Sbjct: 1498 DAWGSKAAAPSRADKEQKADAWGSKAA 1524



 Score =  109 bits (272), Expect = 1e-20
 Identities = 83/267 (31%), Positives = 110/267 (41%), Gaps = 59/267 (22%)
 Frame = -1

Query: 981  GGLSGNGEQTVVTSSWDGASSSWQALSTSTLFGNNNDQKTEQEQGADPWGSKVSLAAGDR 802
            GG      Q     SW       Q   + T    N D+  E       WGS  S    ++
Sbjct: 1294 GGTGNEDNQDRTGGSWGSGRGRGQWGGSGTATEENQDKSGE----FGGWGSGKSWNQKEQ 1349

Query: 801  EQGADPWGSHASIVAGDHE-GSDPWGSKLVPVATDHKQGA-DPW-------GSNNSI--- 658
            E+GA PWGS  +  + D E  +DPWGSK  P  ++H   A D W       G  NS+   
Sbjct: 1350 ERGAGPWGSSVAGASTDKEQNADPWGSKATPSESNHSDKAFDSWVKASSTSGERNSLWAK 1409

Query: 657  -------------------------------------------SAGDCEQGADPWGCNKS 607
                                                       S+ D  QGADPWG   S
Sbjct: 1410 TTGGGGSGKDGDGWNKSSTKTISSTLGMISPDQGEGAATWASGSSRDKTQGADPWGSKAS 1469

Query: 606  ISAGDQGGTDPWGSKLVPVA-SGQRQGADPWGRNISGGS-TDKEERADPWGGKTALGDSS 433
             +A D+G  DPWG KL   A +   QGAD WG   +  S  DKE++AD WG K A GDSS
Sbjct: 1470 PAAKDKGEADPWGGKLAASARADPGQGADAWGSKAAAPSRADKEQKADAWGSKAAPGDSS 1529

Query: 432  HSDKAFDSWVKVS--GTSGEMNSWNKS 358
            ++  +   W KV+  G+  + + W+K+
Sbjct: 1530 NNQNS--PWNKVAGEGSGKDGDGWSKA 1554



 Score = 94.0 bits (232), Expect = 9e-16
 Identities = 64/215 (29%), Positives = 93/215 (43%), Gaps = 12/215 (5%)
 Frame = -1

Query: 972  SGNGEQTVVTSSWDGAS-----SSWQALSTSTLFGNNNDQKTEQEQGADPWGSKVSLAAG 808
            + +GE+  V +  +G         W   S S+ F         +E+GAD W SKV  AA 
Sbjct: 843  TASGEENSVWNKTEGVGCEKDGDGWNKPSASSSFSG-------RERGADQWESKVPAAAK 895

Query: 807  DREQGADPWGSHASIVAGDHEGSDPWGSKLVP-VATDHKQGADPWGSNNSISAGDCEQGA 631
            D  +G D WGS AS+   D  G DPW SK+   V  +  QG DPW SN +++  D EQ  
Sbjct: 896  DHARGVDAWGSKASVANKDQGGEDPWASKVTAGVRAEQGQGTDPWVSNVAVATRDKEQKF 955

Query: 630  DPWGCNKSI---SAGDQGGTDPWGSKLVPVASGQRQGADPWGRNISGGSTDKEERADPWG 460
            D W    ++   S GDQ  +  W         G  +  D W +    G+T     +    
Sbjct: 956  DTWSSKAALAPNSVGDQNSS--WDK---AAGGGSGEDGDSWSKPSCKGTTVAVNNSSSSS 1010

Query: 459  GKTALGDSSHSDKAF---DSWVKVSGTSGEMNSWN 364
             +TA   +  ++K      SW K   +S   + W+
Sbjct: 1011 WETAAIGTKSAEKQEGEPSSWDKAKVSSDGQSGWD 1045



 Score = 93.2 bits (230), Expect = 1e-15
 Identities = 73/231 (31%), Positives = 93/231 (40%), Gaps = 26/231 (11%)
 Frame = -1

Query: 972  SGNGEQTVVTSSWDGASSS------WQALSTSTLFGNNNDQKTEQEQGADPWGSKVSLAA 811
            S +GE+  + +   G   S      W   ST T+         +Q +GA  W S  S   
Sbjct: 1398 STSGERNSLWAKTTGGGGSGKDGDGWNKSSTKTISSTLGMISPDQGEGAATWASGSSR-- 1455

Query: 810  GDREQGADPWGSHASIVAGDHEGSDPWGSKLVPVA-TDHKQGADPWGSNNSI-SAGDCEQ 637
             D+ QGADPWGS AS  A D   +DPWG KL   A  D  QGAD WGS  +  S  D EQ
Sbjct: 1456 -DKTQGADPWGSKASPAAKDKGEADPWGGKLAASARADPGQGADAWGSKAAAPSRADKEQ 1514

Query: 636  GADPWGCNKSISAGDQGGTDPWGSKLVPVASGQ-------------RQGADPWGRNISGG 496
             AD WG   +          PW +K+    SG+             + GAD W +  S G
Sbjct: 1515 KADAWGSKAAPGDSSNNQNSPW-NKVAGEGSGKDGDGWSKAATYSTKNGADGWDKPKSFG 1573

Query: 495  STD-----KEERADPWGGKTALGDSSHSDKAFDSWVKVSGTSGEMNSWNKS 358
            S       KE   D W             +   SW K   ++G   +W  S
Sbjct: 1574 SNQASNWKKEGNEDAWNSSNKPKVEGQGSEPSSSWEKPKVSTGA--TWGSS 1622



 Score = 90.5 bits (223), Expect = 1e-14
 Identities = 47/107 (43%), Positives = 59/107 (55%), Gaps = 19/107 (17%)
 Frame = -2

Query: 266  ADPWGSKVSVTARD----------------DTQGADPWGSKPALSAEDQGGADPWASKMA 135
            ADPWGSK S+ AR+                D   ADPWGSK      D G ADPW +K+ 
Sbjct: 727  ADPWGSKASLAAREGGSADPSGNKASLAAGDGGSADPWGSKQTPGTRDGGSADPWGTKLT 786

Query: 134  AGAREQEQGGDPWGNKMATTSRAEQEQ-GADPWGSNV--AGATDKDQ 3
             GAREQEQG DPWG+ +A T+ A+  +  ADPWG      G++  D+
Sbjct: 787  PGAREQEQGVDPWGSSIAGTTTADNNKPRADPWGGKTTHGGSSHSDK 833



 Score = 90.1 bits (222), Expect = 1e-14
 Identities = 50/137 (36%), Positives = 59/137 (43%), Gaps = 50/137 (36%)
 Frame = -2

Query: 266  ADPWGSKVSVTARDDTQGADPWGSKPALSAEDQGGADPWASKMAAGAREQEQGGDPWGNK 87
            ADPWGSK S+ ARDD   ADPWGSK +L A D G ADPW SK +  A  +    DPWG+K
Sbjct: 674  ADPWGSKASLAARDDGGSADPWGSKASLPAGDGGSADPWGSKTSLAAGAEGSSADPWGSK 733

Query: 86   MATTSR--------------------------------------------------AEQE 57
             +  +R                                                   EQE
Sbjct: 734  ASLAAREGGSADPSGNKASLAAGDGGSADPWGSKQTPGTRDGGSADPWGTKLTPGAREQE 793

Query: 56   QGADPWGSNVAGATDKD 6
            QG DPWGS++AG T  D
Sbjct: 794  QGVDPWGSSIAGTTTAD 810



 Score = 90.1 bits (222), Expect = 1e-14
 Identities = 43/85 (50%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
 Frame = -2

Query: 275  KQGADPWGSKVSVTARDDTQGADPWGSKPALSAEDQGGADPWASKMAAGAR-EQEQGGDP 99
            ++GAD W SKV   A+D  +G D WGSK +++ +DQGG DPWASK+ AG R EQ QG DP
Sbjct: 880  ERGADQWESKVPAAAKDHARGVDAWGSKASVANKDQGGEDPWASKVTAGVRAEQGQGTDP 939

Query: 98   WGNKMATTSRAEQEQGADPWGSNVA 24
            W + +A  +R ++EQ  D W S  A
Sbjct: 940  WVSNVAVATR-DKEQKFDTWSSKAA 963



 Score = 70.5 bits (171), Expect = 1e-08
 Identities = 37/94 (39%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
 Frame = -2

Query: 281  DHKQGADPWGSKVSVTARDDTQGADPWGSK--PALSAEDQGGADPWASKMAAGAREQEQG 108
            DH +G D WGSK SV A  D  G DPW SK    + AE   G DPW S +A   R++EQ 
Sbjct: 896  DHARGVDAWGSKASV-ANKDQGGEDPWASKVTAGVRAEQGQGTDPWVSNVAVATRDKEQK 954

Query: 107  GDPWGNKMATTSRAEQEQGADPWGSNVAGATDKD 6
             D W +K A    +  +Q +  W     G + +D
Sbjct: 955  FDTWSSKAALAPNSVGDQNSS-WDKAAGGGSGED 987


>gb|ONK75729.1| uncharacterized protein A4U43_C03F19930 [Asparagus officinalis]
          Length = 1710

 Score =  898 bits (2320), Expect = 0.0
 Identities = 482/708 (68%), Positives = 531/708 (75%), Gaps = 58/708 (8%)
 Frame = -1

Query: 2304 KACDVVEACKGFFNIYATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQ 2125
            KACDVVEACKGFFNIY+TRMGLVP+ EIPHLLS RNK C +SKGTWVRMK+GNYKGDLGQ
Sbjct: 147  KACDVVEACKGFFNIYSTRMGLVPNTEIPHLLSIRNKACILSKGTWVRMKSGNYKGDLGQ 206

Query: 2124 VVDYDDARKRATIKLVPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIR 1945
            VVDYDD RK+ATIKLVPRIDLQAIAKK+GGGVSLKEA VP PRLISS ELE FRSHIEIR
Sbjct: 207  VVDYDDMRKKATIKLVPRIDLQAIAKKFGGGVSLKEAAVPSPRLISSHELEQFRSHIEIR 266

Query: 1944 RDRHTGEYFEILDGLMLKDGYLYKKVSIASIVFWGVQPSKDELLKFTEMSKAEEEDVSWL 1765
            RDRH+GE FEILDGLMLKDGYLYKKVSIASIV+WGV+PSKDELLKFTEMSK EEEDVSWL
Sbjct: 267  RDRHSGECFEILDGLMLKDGYLYKKVSIASIVYWGVEPSKDELLKFTEMSKPEEEDVSWL 326

Query: 1764 SSVYNARKKMKSSETADVKGASEQGNGFNLHDLVLFGRKGFGVIIDLGKDG-IKILKGDT 1588
            SSVYN RKK+K S+ +D+KG+SE+GN FNLHDLVLFGRK FGVIID+GKDG +K+L+GD 
Sbjct: 327  SSVYNVRKKIKPSKDSDLKGSSEKGNSFNLHDLVLFGRKAFGVIIDMGKDGTMKVLRGDK 386

Query: 1587 AGQEVMTIKFEDIKSRCVDKMFTASDCHRKTIYINDSVKVSDGPLEGREGTVRHMYKGTL 1408
             GQEV+T+K E IKS+CVDKMFTASD HRKTI IND +KV +GPLEGR+GT  HMYKGTL
Sbjct: 387  EGQEVITVKAEAIKSQCVDKMFTASDRHRKTICINDIIKVLEGPLEGRQGTACHMYKGTL 446

Query: 1407 FIYDENQEENSGLFCAKSDLCENSTPPKDSSFRKGGNKSSSSFNQSPVRSCEQEDSSHTF 1228
            FIYDE+QE NSG+FC KSDLCE  TP KDS F KG NK+SSSF+Q PV S EQEDSS + 
Sbjct: 447  FIYDESQEGNSGIFCTKSDLCEKITPAKDS-FGKG-NKASSSFSQDPVISSEQEDSSFS- 503

Query: 1227 RNRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQFLSIP 1048
            RNRR ESNQ FS+GQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITV+EQ LS P
Sbjct: 504  RNRRRESNQIFSVGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVDEQLLSDP 563

Query: 1047 NIKRDFAAEMPSDIFGTQERFTGGLSGNGEQTVVTSSWDGASSSWQALSTSTL-FGNNND 871
            N+KRD A               GGLSGNGEQT+  SSWDG SSSWQ LSTS   F  NND
Sbjct: 564  NLKRDTAG--------------GGLSGNGEQTLGASSWDGGSSSWQDLSTSAFSFSANND 609

Query: 870  QKTEQEQGADPWGSKVSLAAGDREQGADPWGSHASIVAGDHEGSDPWGSKLVPVATDHKQ 691
            QK+ QEQGADPW  +VS  AGD+EQ +DPW S ASI AGD   +DPWGSK    A D   
Sbjct: 610  QKSGQEQGADPWAGRVSHVAGDQEQ-SDPWVSKASITAGDGGSADPWGSKASLAARDDGG 668

Query: 690  GADPWGSNNSISAGDCEQG----------------ADPWGC----------------NK- 610
             ADPWGS  S+ AGD                    ADPWG                 NK 
Sbjct: 669  SADPWGSKASLPAGDGGSADPWGSKTSLAAGEGSSADPWGSKASLAAREGGSADPSGNKA 728

Query: 609  SISAGDQGGTDPWGSKLVPVASGQRQG--ADPWGRNISGGSTDKEE-------------- 478
            S++AGD G  DPWGSK  P   G R G  ADPWG  ++ G+ ++E+              
Sbjct: 729  SLAAGDGGSADPWGSKQTP---GTRDGGSADPWGTKLTPGAREQEQGVDPWGSSIAGTTT 785

Query: 477  ------RADPWGGKTALGDSSHSDKAFDSWVKVSGTSGEMNS-WNKSE 355
                  RADPWGGKT  G SSHSDK FDSW K S  SGE NS WNK+E
Sbjct: 786  ADNNKPRADPWGGKTTHGGSSHSDKTFDSWAKASTASGEENSVWNKTE 833



 Score = 99.8 bits (247), Expect(2) = 9e-40
 Identities = 48/86 (55%), Positives = 58/86 (67%)
 Frame = -2

Query: 281  DHKQGADPWGSKVSVTARDDTQGADPWGSKPALSAEDQGGADPWASKMAAGAREQEQGGD 102
            D  +GA  W S  S   RD TQGADPWGSK + +A+D+G ADPW  K+AA AR+  QG D
Sbjct: 1418 DQGEGAATWASGSS---RDKTQGADPWGSKASPAAKDKGEADPWGGKLAASARDPGQGAD 1474

Query: 101  PWGNKMATTSRAEQEQGADPWGSNVA 24
             WG+K A  SRA++EQ AD WGS  A
Sbjct: 1475 AWGSKAAAPSRADKEQKADAWGSKAA 1500



 Score = 95.5 bits (236), Expect(2) = 9e-40
 Identities = 64/186 (34%), Positives = 85/186 (45%), Gaps = 14/186 (7%)
 Frame = -1

Query: 873  DQKTEQEQGADPWGSKVSLAAGDREQGADPWGSHASIVAGDHEGSDPWGSKLVPVATDHK 694
            D + +   G   WGS        R +G   WG +    AGD +  D  G       +   
Sbjct: 1212 DGENQDGSGDLGWGS-------GRGRG---WGRYGGRGAGDGDNQDRQGDYGGGWESGRG 1261

Query: 693  QGADPWGSNNSISAGDCE----------QGADPWGCNKSISAGDQ---GGTDPWGSKLVP 553
             G   +G        D +          +G   WG + + +  +Q   G    WGS    
Sbjct: 1262 GGRGRYGERGGTGNEDNQDRTGGSWGSGRGRGQWGGSGTATEENQDKSGEFGGWGSGKSW 1321

Query: 552  VASGQRQGADPWGRNISGGSTDKEERADPWGGKTALGDSSHSDKAFDSWVKVSGTSGEMN 373
                Q +GA PWG +++G STDKE+ ADPWG K    +S+HSDKAFDSWVK S TSGE N
Sbjct: 1322 NQKEQERGAGPWGSSVAGASTDKEQNADPWGSKATPSESNHSDKAFDSWVKASSTSGERN 1381

Query: 372  S-WNKS 358
            S W K+
Sbjct: 1382 SLWAKT 1387



 Score =  113 bits (282), Expect = 9e-22
 Identities = 83/266 (31%), Positives = 109/266 (40%), Gaps = 58/266 (21%)
 Frame = -1

Query: 981  GGLSGNGEQTVVTSSWDGASSSWQALSTSTLFGNNNDQKTEQEQGADPWGSKVSLAAGDR 802
            GG      Q     SW       Q   + T    N D+  E       WGS  S    ++
Sbjct: 1271 GGTGNEDNQDRTGGSWGSGRGRGQWGGSGTATEENQDKSGE----FGGWGSGKSWNQKEQ 1326

Query: 801  EQGADPWGSHASIVAGDHE-GSDPWGSKLVPVATDHKQGA-DPW-------GSNNSI--- 658
            E+GA PWGS  +  + D E  +DPWGSK  P  ++H   A D W       G  NS+   
Sbjct: 1327 ERGAGPWGSSVAGASTDKEQNADPWGSKATPSESNHSDKAFDSWVKASSTSGERNSLWAK 1386

Query: 657  -------------------------------------------SAGDCEQGADPWGCNKS 607
                                                       S+ D  QGADPWG   S
Sbjct: 1387 TTGGGGSGKDGDGWNKSSTKTISSTLGMISPDQGEGAATWASGSSRDKTQGADPWGSKAS 1446

Query: 606  ISAGDQGGTDPWGSKLVPVASGQRQGADPWGRNISGGS-TDKEERADPWGGKTALGDSSH 430
             +A D+G  DPWG KL   A    QGAD WG   +  S  DKE++AD WG K A GDSS+
Sbjct: 1447 PAAKDKGEADPWGGKLAASARDPGQGADAWGSKAAAPSRADKEQKADAWGSKAAPGDSSN 1506

Query: 429  SDKAFDSWVKVS--GTSGEMNSWNKS 358
            +  +   W KV+  G+  + + W+K+
Sbjct: 1507 NQNS--PWNKVAGEGSGKDGDGWSKA 1530



 Score = 97.4 bits (241), Expect = 7e-17
 Identities = 73/230 (31%), Positives = 93/230 (40%), Gaps = 25/230 (10%)
 Frame = -1

Query: 972  SGNGEQTVVTSSWDGASSS------WQALSTSTLFGNNNDQKTEQEQGADPWGSKVSLAA 811
            S +GE+  + +   G   S      W   ST T+         +Q +GA  W S  S   
Sbjct: 1375 STSGERNSLWAKTTGGGGSGKDGDGWNKSSTKTISSTLGMISPDQGEGAATWASGSSR-- 1432

Query: 810  GDREQGADPWGSHASIVAGDHEGSDPWGSKLVPVATDHKQGADPWGSNNSI-SAGDCEQG 634
             D+ QGADPWGS AS  A D   +DPWG KL   A D  QGAD WGS  +  S  D EQ 
Sbjct: 1433 -DKTQGADPWGSKASPAAKDKGEADPWGGKLAASARDPGQGADAWGSKAAAPSRADKEQK 1491

Query: 633  ADPWGCNKSISAGDQGGTDPWGSKLVPVASGQ-------------RQGADPWGRNISGGS 493
            AD WG   +          PW +K+    SG+             + GAD W +  S GS
Sbjct: 1492 ADAWGSKAAPGDSSNNQNSPW-NKVAGEGSGKDGDGWSKAATYSTKNGADGWDKPKSFGS 1550

Query: 492  TD-----KEERADPWGGKTALGDSSHSDKAFDSWVKVSGTSGEMNSWNKS 358
                   KE   D W             +   SW K   ++G   +W  S
Sbjct: 1551 NQASNWKKEGNEDAWNSSNKPKVEGQGSEPSSSWEKPKVSTGA--TWGSS 1598



 Score = 94.0 bits (232), Expect = 9e-16
 Identities = 64/215 (29%), Positives = 93/215 (43%), Gaps = 12/215 (5%)
 Frame = -1

Query: 972  SGNGEQTVVTSSWDGAS-----SSWQALSTSTLFGNNNDQKTEQEQGADPWGSKVSLAAG 808
            + +GE+  V +  +G         W   S S+ F         +E+GAD W SKV  AA 
Sbjct: 820  TASGEENSVWNKTEGVGCEKDGDGWNKPSASSSFSG-------RERGADQWESKVPAAAK 872

Query: 807  DREQGADPWGSHASIVAGDHEGSDPWGSKLVP-VATDHKQGADPWGSNNSISAGDCEQGA 631
            D  +G D WGS AS+   D  G DPW SK+   V  +  QG DPW SN +++  D EQ  
Sbjct: 873  DHARGVDAWGSKASVANKDQGGEDPWASKVTAGVRAEQGQGTDPWVSNVAVATRDKEQKF 932

Query: 630  DPWGCNKSI---SAGDQGGTDPWGSKLVPVASGQRQGADPWGRNISGGSTDKEERADPWG 460
            D W    ++   S GDQ  +  W         G  +  D W +    G+T     +    
Sbjct: 933  DTWSSKAALAPNSVGDQNSS--WDK---AAGGGSGEDGDSWSKPSCKGTTVAVNNSSSSS 987

Query: 459  GKTALGDSSHSDKAF---DSWVKVSGTSGEMNSWN 364
             +TA   +  ++K      SW K   +S   + W+
Sbjct: 988  WETAAIGTKSAEKQEGEPSSWDKAKVSSDGQSGWD 1022



 Score = 90.5 bits (223), Expect = 1e-14
 Identities = 47/107 (43%), Positives = 59/107 (55%), Gaps = 19/107 (17%)
 Frame = -2

Query: 266  ADPWGSKVSVTARD----------------DTQGADPWGSKPALSAEDQGGADPWASKMA 135
            ADPWGSK S+ AR+                D   ADPWGSK      D G ADPW +K+ 
Sbjct: 704  ADPWGSKASLAAREGGSADPSGNKASLAAGDGGSADPWGSKQTPGTRDGGSADPWGTKLT 763

Query: 134  AGAREQEQGGDPWGNKMATTSRAEQEQ-GADPWGSNV--AGATDKDQ 3
             GAREQEQG DPWG+ +A T+ A+  +  ADPWG      G++  D+
Sbjct: 764  PGAREQEQGVDPWGSSIAGTTTADNNKPRADPWGGKTTHGGSSHSDK 810



 Score = 90.1 bits (222), Expect = 1e-14
 Identities = 43/85 (50%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
 Frame = -2

Query: 275  KQGADPWGSKVSVTARDDTQGADPWGSKPALSAEDQGGADPWASKMAAGAR-EQEQGGDP 99
            ++GAD W SKV   A+D  +G D WGSK +++ +DQGG DPWASK+ AG R EQ QG DP
Sbjct: 857  ERGADQWESKVPAAAKDHARGVDAWGSKASVANKDQGGEDPWASKVTAGVRAEQGQGTDP 916

Query: 98   WGNKMATTSRAEQEQGADPWGSNVA 24
            W + +A  +R ++EQ  D W S  A
Sbjct: 917  WVSNVAVATR-DKEQKFDTWSSKAA 940



 Score = 88.6 bits (218), Expect = 4e-14
 Identities = 53/136 (38%), Positives = 60/136 (44%), Gaps = 49/136 (36%)
 Frame = -2

Query: 266  ADPWGSKVSVTARDDTQGADPWGSKPALSAEDQGGADPWASKMAAGARE----------- 120
            ADPWGSK S+ ARDD   ADPWGSK +L A D G ADPW SK +  A E           
Sbjct: 652  ADPWGSKASLAARDDGGSADPWGSKASLPAGDGGSADPWGSKTSLAAGEGSSADPWGSKA 711

Query: 119  ---QEQGG-------------------DPWGNKMA----------------TTSRAEQEQ 54
                 +GG                   DPWG+K                  T    EQEQ
Sbjct: 712  SLAAREGGSADPSGNKASLAAGDGGSADPWGSKQTPGTRDGGSADPWGTKLTPGAREQEQ 771

Query: 53   GADPWGSNVAGATDKD 6
            G DPWGS++AG T  D
Sbjct: 772  GVDPWGSSIAGTTTAD 787



 Score = 79.3 bits (194), Expect = 3e-11
 Identities = 39/84 (46%), Positives = 50/84 (59%)
 Frame = -2

Query: 275 KQGADPWGSKVSVTARDDTQGADPWGSKPALSAEDQGGADPWASKMAAGAREQEQGGDPW 96
           +QGADPW  +VS  A D  Q +DPW SK +++A D G ADPW SK +  AR+     DPW
Sbjct: 615 EQGADPWAGRVSHVAGDQEQ-SDPWVSKASITAGDGGSADPWGSKASLAARDDGGSADPW 673

Query: 95  GNKMATTSRAEQEQGADPWGSNVA 24
           G+K +    A     ADPWGS  +
Sbjct: 674 GSKASLP--AGDGGSADPWGSKTS 695



 Score = 70.5 bits (171), Expect = 1e-08
 Identities = 37/94 (39%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
 Frame = -2

Query: 281  DHKQGADPWGSKVSVTARDDTQGADPWGSK--PALSAEDQGGADPWASKMAAGAREQEQG 108
            DH +G D WGSK SV A  D  G DPW SK    + AE   G DPW S +A   R++EQ 
Sbjct: 873  DHARGVDAWGSKASV-ANKDQGGEDPWASKVTAGVRAEQGQGTDPWVSNVAVATRDKEQK 931

Query: 107  GDPWGNKMATTSRAEQEQGADPWGSNVAGATDKD 6
             D W +K A    +  +Q +  W     G + +D
Sbjct: 932  FDTWSSKAALAPNSVGDQNSS-WDKAAGGGSGED 964


>ref|XP_010933206.1| PREDICTED: protein RNA-directed DNA methylation 3 isoform X3 [Elaeis
            guineensis]
          Length = 2067

 Score =  619 bits (1595), Expect = 0.0
 Identities = 349/668 (52%), Positives = 438/668 (65%), Gaps = 19/668 (2%)
 Frame = -1

Query: 2304 KACDVVEACKGFFNIYATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQ 2125
            K CD++EACKGF+++Y++++  VP  E+P L S+R+K C +S+G+WVRMK+G YKGDL Q
Sbjct: 204  KECDIIEACKGFYSVYSSKINRVPGSEVPQLFSSRSKSCEVSEGSWVRMKSGKYKGDLAQ 263

Query: 2124 VVDYDDARKRATIKLVPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIR 1945
            VV  DD +K+  +KL+PR+DLQAI+KK+GGG+SLK+A VP PRLISS ELE FR HIE+R
Sbjct: 264  VVAVDDGQKKVMVKLIPRVDLQAISKKFGGGISLKQAAVPAPRLISSHELEMFRPHIEVR 323

Query: 1944 RDRHTGEYFEILDGLMLKDGYLYKKVSIASIVFWGVQPSKDELLKFTEMSKAEEEDVSWL 1765
            RDR TGE F+ILDGLMLKDG+LYK+VSI S++ W VQPS  ELLKF+ +SK  +ED++W+
Sbjct: 324  RDRQTGEIFDILDGLMLKDGFLYKRVSIGSVICWAVQPSDMELLKFSNVSKVGDEDLTWV 383

Query: 1764 SSVYNARKKMKSSETADVKGASEQGNGFNLHDLVLFGRKGFGVIIDLGKDGIKILKGDTA 1585
            SSVY  R KM+ SE AD K  +++GNGFNLHD VLFG K FGVII + KDG +ILKG   
Sbjct: 384  SSVYRGRNKMRLSEAADQKVLAKKGNGFNLHDFVLFGHKAFGVIIAVEKDGFRILKGGME 443

Query: 1584 GQEVMTIKFEDIKSRCVDKMFTASDCHRKTIYINDSVKVSDGPLEGREGTVRHMYKGTLF 1405
            G EV+T+K +DIKS CVDKMFTASD + KTI IND+VKV +GPL+ R+G VRHMYKGTLF
Sbjct: 444  GPEVVTVKVQDIKSACVDKMFTASDRYMKTISINDTVKVLEGPLQDRQGIVRHMYKGTLF 503

Query: 1404 IYDENQEENSGLFCAKSDLCENSTPPKDSSFRKGGNKSSSSFNQSPVRSCEQEDSSHTFR 1225
            IYDEN+ ENSG FCAKS  CEN    K       G KSS SF Q P+RS E++D SH F 
Sbjct: 504  IYDENETENSGFFCAKSASCENLKELK-------GEKSSHSFFQPPMRSSEEQDRSHGFN 556

Query: 1224 -NRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQFLSIP 1048
             +R+S+ +Q FSIGQTLRIRKGPLKGYLCRVV +YRSDVTVKLDSLVKVITVE ++LS+P
Sbjct: 557  WHRQSDRDQIFSIGQTLRIRKGPLKGYLCRVVGVYRSDVTVKLDSLVKVITVEAEYLSVP 616

Query: 1047 NIKRDFAAEMPSDIFGTQERFTGGLSGNGEQTVVTSSWDGA-----SSSWQALSTSTLFG 883
            N+KRD +A   S+ FGTQE    GLS  G Q V    WD +       SWQA   S    
Sbjct: 617  NVKRDDSAATTSNTFGTQE----GLSIAG-QHVDNGQWDASVPSFGRGSWQAFPGSNSSD 671

Query: 882  -NNNDQKTEQEQGADPWGSKV-SLAAGD---REQGADPWGSHASIVAGDHEGSDPW---- 730
             +NND K+++   ADPWGSKV S A  D     +  D WG  A       E    W    
Sbjct: 672  VDNNDHKSDEGHDADPWGSKVLSGARADAWHSSKAMDGWGKAA---GSSGEQDSQWNMTA 728

Query: 729  -GSKLVPVATDHKQGADPW-GSNNSISAGDCEQGADPWGCNKSISAGDQGGTDPWGSKLV 556
             G K+   A +  + AD W G   + ++ + ++   P        + D GG   WG    
Sbjct: 729  AGDKVTDQARNCIEDADGWNGKALAKTSTEIDESKKP-----KPQSSDAGG---WGRG-- 778

Query: 555  PVASGQRQGADPWGRNISGGSTDKEERADPWGGKTALGDSSHSDKAFDSW--VKVSGTSG 382
                G     DP   N+S G+ DK+   D       LGDS  +      W     S   G
Sbjct: 779  --DFGSGNNLDP-TENVS-GNWDKQRDDD-------LGDSRKNSDGVSGWDRAATSKDKG 827

Query: 381  EMNSWNKS 358
            +  SW++S
Sbjct: 828  KDLSWDQS 835


>ref|XP_010933194.1| PREDICTED: protein RNA-directed DNA methylation 3 isoform X1 [Elaeis
            guineensis]
          Length = 2069

 Score =  619 bits (1595), Expect = 0.0
 Identities = 349/668 (52%), Positives = 438/668 (65%), Gaps = 19/668 (2%)
 Frame = -1

Query: 2304 KACDVVEACKGFFNIYATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQ 2125
            K CD++EACKGF+++Y++++  VP  E+P L S+R+K C +S+G+WVRMK+G YKGDL Q
Sbjct: 206  KECDIIEACKGFYSVYSSKINRVPGSEVPQLFSSRSKSCEVSEGSWVRMKSGKYKGDLAQ 265

Query: 2124 VVDYDDARKRATIKLVPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIR 1945
            VV  DD +K+  +KL+PR+DLQAI+KK+GGG+SLK+A VP PRLISS ELE FR HIE+R
Sbjct: 266  VVAVDDGQKKVMVKLIPRVDLQAISKKFGGGISLKQAAVPAPRLISSHELEMFRPHIEVR 325

Query: 1944 RDRHTGEYFEILDGLMLKDGYLYKKVSIASIVFWGVQPSKDELLKFTEMSKAEEEDVSWL 1765
            RDR TGE F+ILDGLMLKDG+LYK+VSI S++ W VQPS  ELLKF+ +SK  +ED++W+
Sbjct: 326  RDRQTGEIFDILDGLMLKDGFLYKRVSIGSVICWAVQPSDMELLKFSNVSKVGDEDLTWV 385

Query: 1764 SSVYNARKKMKSSETADVKGASEQGNGFNLHDLVLFGRKGFGVIIDLGKDGIKILKGDTA 1585
            SSVY  R KM+ SE AD K  +++GNGFNLHD VLFG K FGVII + KDG +ILKG   
Sbjct: 386  SSVYRGRNKMRLSEAADQKVLAKKGNGFNLHDFVLFGHKAFGVIIAVEKDGFRILKGGME 445

Query: 1584 GQEVMTIKFEDIKSRCVDKMFTASDCHRKTIYINDSVKVSDGPLEGREGTVRHMYKGTLF 1405
            G EV+T+K +DIKS CVDKMFTASD + KTI IND+VKV +GPL+ R+G VRHMYKGTLF
Sbjct: 446  GPEVVTVKVQDIKSACVDKMFTASDRYMKTISINDTVKVLEGPLQDRQGIVRHMYKGTLF 505

Query: 1404 IYDENQEENSGLFCAKSDLCENSTPPKDSSFRKGGNKSSSSFNQSPVRSCEQEDSSHTFR 1225
            IYDEN+ ENSG FCAKS  CEN    K       G KSS SF Q P+RS E++D SH F 
Sbjct: 506  IYDENETENSGFFCAKSASCENLKELK-------GEKSSHSFFQPPMRSSEEQDRSHGFN 558

Query: 1224 -NRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQFLSIP 1048
             +R+S+ +Q FSIGQTLRIRKGPLKGYLCRVV +YRSDVTVKLDSLVKVITVE ++LS+P
Sbjct: 559  WHRQSDRDQIFSIGQTLRIRKGPLKGYLCRVVGVYRSDVTVKLDSLVKVITVEAEYLSVP 618

Query: 1047 NIKRDFAAEMPSDIFGTQERFTGGLSGNGEQTVVTSSWDGA-----SSSWQALSTSTLFG 883
            N+KRD +A   S+ FGTQE    GLS  G Q V    WD +       SWQA   S    
Sbjct: 619  NVKRDDSAATTSNTFGTQE----GLSIAG-QHVDNGQWDASVPSFGRGSWQAFPGSNSSD 673

Query: 882  -NNNDQKTEQEQGADPWGSKV-SLAAGD---REQGADPWGSHASIVAGDHEGSDPW---- 730
             +NND K+++   ADPWGSKV S A  D     +  D WG  A       E    W    
Sbjct: 674  VDNNDHKSDEGHDADPWGSKVLSGARADAWHSSKAMDGWGKAA---GSSGEQDSQWNMTA 730

Query: 729  -GSKLVPVATDHKQGADPW-GSNNSISAGDCEQGADPWGCNKSISAGDQGGTDPWGSKLV 556
             G K+   A +  + AD W G   + ++ + ++   P        + D GG   WG    
Sbjct: 731  AGDKVTDQARNCIEDADGWNGKALAKTSTEIDESKKP-----KPQSSDAGG---WGRG-- 780

Query: 555  PVASGQRQGADPWGRNISGGSTDKEERADPWGGKTALGDSSHSDKAFDSW--VKVSGTSG 382
                G     DP   N+S G+ DK+   D       LGDS  +      W     S   G
Sbjct: 781  --DFGSGNNLDP-TENVS-GNWDKQRDDD-------LGDSRKNSDGVSGWDRAATSKDKG 829

Query: 381  EMNSWNKS 358
            +  SW++S
Sbjct: 830  KDLSWDQS 837


>ref|XP_010933212.1| PREDICTED: protein RNA-directed DNA methylation 3 isoform X4 [Elaeis
            guineensis]
          Length = 2066

 Score =  617 bits (1592), Expect = 0.0
 Identities = 346/668 (51%), Positives = 436/668 (65%), Gaps = 19/668 (2%)
 Frame = -1

Query: 2304 KACDVVEACKGFFNIYATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQ 2125
            K CD++EACKGF+++Y++++  VP  E+P L S+R+K C +S+G+WVRMK+G YKGDL Q
Sbjct: 204  KECDIIEACKGFYSVYSSKINRVPGSEVPQLFSSRSKSCEVSEGSWVRMKSGKYKGDLAQ 263

Query: 2124 VVDYDDARKRATIKLVPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIR 1945
            VV  DD +K+  +KL+PR+DLQAI+KK+GGG+SLK+A VP PRLISS ELE FR HIE+R
Sbjct: 264  VVAVDDGQKKVMVKLIPRVDLQAISKKFGGGISLKQAAVPAPRLISSHELEMFRPHIEVR 323

Query: 1944 RDRHTGEYFEILDGLMLKDGYLYKKVSIASIVFWGVQPSKDELLKFTEMSKAEEEDVSWL 1765
            RDR TGE F+ILDGLMLKDG+LYK+VSI S++ W VQPS  ELLKF+ +SK  +ED++W+
Sbjct: 324  RDRQTGEIFDILDGLMLKDGFLYKRVSIGSVICWAVQPSDMELLKFSNVSKVGDEDLTWV 383

Query: 1764 SSVYNARKKMKSSETADVKGASEQGNGFNLHDLVLFGRKGFGVIIDLGKDGIKILKGDTA 1585
            SSVY  R KM+ SE AD K  +++GNGFNLHD VLFG K FGVII + KDG +ILKG   
Sbjct: 384  SSVYRGRNKMRLSEAADQKVLAKKGNGFNLHDFVLFGHKAFGVIIAVEKDGFRILKGGME 443

Query: 1584 GQEVMTIKFEDIKSRCVDKMFTASDCHRKTIYINDSVKVSDGPLEGREGTVRHMYKGTLF 1405
            G EV+T+K +DIKS CVDKMFTASD + KTI IND+VKV +GPL+ R+G VRHMYKGTLF
Sbjct: 444  GPEVVTVKVQDIKSACVDKMFTASDRYMKTISINDTVKVLEGPLQDRQGIVRHMYKGTLF 503

Query: 1404 IYDENQEENSGLFCAKSDLCENSTPPKDSSFRKGGNKSSSSFNQSPVRSCEQEDSSHTFR 1225
            IYDEN+ ENSG FCAKS  CEN    K       G KSS SF Q P+RS E++D SH F 
Sbjct: 504  IYDENETENSGFFCAKSASCENLKELK-------GEKSSHSFFQPPMRSSEEQDRSHGFN 556

Query: 1224 -NRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQFLSIP 1048
             +R+S+ +Q FSIGQTLRIRKGPLKGYLCRVV +YRSDVTVKLDSLVKVITVE ++LS+P
Sbjct: 557  WHRQSDRDQIFSIGQTLRIRKGPLKGYLCRVVGVYRSDVTVKLDSLVKVITVEAEYLSVP 616

Query: 1047 NIKRDFAAEMPSDIFGTQERFTGGLSGNGEQTVVTSSWDGA-----SSSWQALSTSTLFG 883
            N+KRD +A   S+ FGTQE  + G      Q V    WD +       SWQA   S    
Sbjct: 617  NVKRDDSAATTSNTFGTQEGLSIG------QHVDNGQWDASVPSFGRGSWQAFPGSNSSD 670

Query: 882  -NNNDQKTEQEQGADPWGSKV-SLAAGD---REQGADPWGSHASIVAGDHEGSDPW---- 730
             +NND K+++   ADPWGSKV S A  D     +  D WG  A       E    W    
Sbjct: 671  VDNNDHKSDEGHDADPWGSKVLSGARADAWHSSKAMDGWGKAA---GSSGEQDSQWNMTA 727

Query: 729  -GSKLVPVATDHKQGADPW-GSNNSISAGDCEQGADPWGCNKSISAGDQGGTDPWGSKLV 556
             G K+   A +  + AD W G   + ++ + ++   P        + D GG   WG    
Sbjct: 728  AGDKVTDQARNCIEDADGWNGKALAKTSTEIDESKKP-----KPQSSDAGG---WGRG-- 777

Query: 555  PVASGQRQGADPWGRNISGGSTDKEERADPWGGKTALGDSSHSDKAFDSW--VKVSGTSG 382
                G     DP   N+S G+ DK+   D       LGDS  +      W     S   G
Sbjct: 778  --DFGSGNNLDP-TENVS-GNWDKQRDDD-------LGDSRKNSDGVSGWDRAATSKDKG 826

Query: 381  EMNSWNKS 358
            +  SW++S
Sbjct: 827  KDLSWDQS 834


>ref|XP_010933199.1| PREDICTED: protein RNA-directed DNA methylation 3 isoform X2 [Elaeis
            guineensis]
          Length = 2068

 Score =  617 bits (1592), Expect = 0.0
 Identities = 346/668 (51%), Positives = 436/668 (65%), Gaps = 19/668 (2%)
 Frame = -1

Query: 2304 KACDVVEACKGFFNIYATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQ 2125
            K CD++EACKGF+++Y++++  VP  E+P L S+R+K C +S+G+WVRMK+G YKGDL Q
Sbjct: 206  KECDIIEACKGFYSVYSSKINRVPGSEVPQLFSSRSKSCEVSEGSWVRMKSGKYKGDLAQ 265

Query: 2124 VVDYDDARKRATIKLVPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIR 1945
            VV  DD +K+  +KL+PR+DLQAI+KK+GGG+SLK+A VP PRLISS ELE FR HIE+R
Sbjct: 266  VVAVDDGQKKVMVKLIPRVDLQAISKKFGGGISLKQAAVPAPRLISSHELEMFRPHIEVR 325

Query: 1944 RDRHTGEYFEILDGLMLKDGYLYKKVSIASIVFWGVQPSKDELLKFTEMSKAEEEDVSWL 1765
            RDR TGE F+ILDGLMLKDG+LYK+VSI S++ W VQPS  ELLKF+ +SK  +ED++W+
Sbjct: 326  RDRQTGEIFDILDGLMLKDGFLYKRVSIGSVICWAVQPSDMELLKFSNVSKVGDEDLTWV 385

Query: 1764 SSVYNARKKMKSSETADVKGASEQGNGFNLHDLVLFGRKGFGVIIDLGKDGIKILKGDTA 1585
            SSVY  R KM+ SE AD K  +++GNGFNLHD VLFG K FGVII + KDG +ILKG   
Sbjct: 386  SSVYRGRNKMRLSEAADQKVLAKKGNGFNLHDFVLFGHKAFGVIIAVEKDGFRILKGGME 445

Query: 1584 GQEVMTIKFEDIKSRCVDKMFTASDCHRKTIYINDSVKVSDGPLEGREGTVRHMYKGTLF 1405
            G EV+T+K +DIKS CVDKMFTASD + KTI IND+VKV +GPL+ R+G VRHMYKGTLF
Sbjct: 446  GPEVVTVKVQDIKSACVDKMFTASDRYMKTISINDTVKVLEGPLQDRQGIVRHMYKGTLF 505

Query: 1404 IYDENQEENSGLFCAKSDLCENSTPPKDSSFRKGGNKSSSSFNQSPVRSCEQEDSSHTFR 1225
            IYDEN+ ENSG FCAKS  CEN    K       G KSS SF Q P+RS E++D SH F 
Sbjct: 506  IYDENETENSGFFCAKSASCENLKELK-------GEKSSHSFFQPPMRSSEEQDRSHGFN 558

Query: 1224 -NRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQFLSIP 1048
             +R+S+ +Q FSIGQTLRIRKGPLKGYLCRVV +YRSDVTVKLDSLVKVITVE ++LS+P
Sbjct: 559  WHRQSDRDQIFSIGQTLRIRKGPLKGYLCRVVGVYRSDVTVKLDSLVKVITVEAEYLSVP 618

Query: 1047 NIKRDFAAEMPSDIFGTQERFTGGLSGNGEQTVVTSSWDGA-----SSSWQALSTSTLFG 883
            N+KRD +A   S+ FGTQE  + G      Q V    WD +       SWQA   S    
Sbjct: 619  NVKRDDSAATTSNTFGTQEGLSIG------QHVDNGQWDASVPSFGRGSWQAFPGSNSSD 672

Query: 882  -NNNDQKTEQEQGADPWGSKV-SLAAGD---REQGADPWGSHASIVAGDHEGSDPW---- 730
             +NND K+++   ADPWGSKV S A  D     +  D WG  A       E    W    
Sbjct: 673  VDNNDHKSDEGHDADPWGSKVLSGARADAWHSSKAMDGWGKAA---GSSGEQDSQWNMTA 729

Query: 729  -GSKLVPVATDHKQGADPW-GSNNSISAGDCEQGADPWGCNKSISAGDQGGTDPWGSKLV 556
             G K+   A +  + AD W G   + ++ + ++   P        + D GG   WG    
Sbjct: 730  AGDKVTDQARNCIEDADGWNGKALAKTSTEIDESKKP-----KPQSSDAGG---WGRG-- 779

Query: 555  PVASGQRQGADPWGRNISGGSTDKEERADPWGGKTALGDSSHSDKAFDSW--VKVSGTSG 382
                G     DP   N+S G+ DK+   D       LGDS  +      W     S   G
Sbjct: 780  --DFGSGNNLDP-TENVS-GNWDKQRDDD-------LGDSRKNSDGVSGWDRAATSKDKG 828

Query: 381  EMNSWNKS 358
            +  SW++S
Sbjct: 829  KDLSWDQS 836


>ref|XP_008794002.1| PREDICTED: protein RNA-directed DNA methylation 3 [Phoenix
            dactylifera]
          Length = 2039

 Score =  610 bits (1573), Expect = 0.0
 Identities = 343/664 (51%), Positives = 437/664 (65%), Gaps = 15/664 (2%)
 Frame = -1

Query: 2304 KACDVVEACKGFFNIYATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQ 2125
            K  DV EACKGF+++Y++++  V   E+P L S+R+K C +S+G+WVRMK+G YKGDL Q
Sbjct: 202  KEYDVTEACKGFYSVYSSKINRVHGSEVPQLFSSRSKSCEVSEGSWVRMKSGKYKGDLAQ 261

Query: 2124 VVDYDDARKRATIKLVPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIR 1945
            VV  DD +K+  +KLVPR+DLQAI+KK+GGGVSLK+A VP PRLISS ELE FR HIE+R
Sbjct: 262  VVAVDDGQKKVMVKLVPRVDLQAISKKFGGGVSLKQAAVPAPRLISSHELEMFRPHIEVR 321

Query: 1944 RDRHTGEYFEILDGLMLKDGYLYKKVSIASIVFWGVQPSKDELLKFTEMSKAEEEDVSWL 1765
            RDR TGE FEILDGLMLKDG+LYK+VSI S++ WGVQPS  ELLKF+ + K  +E ++W+
Sbjct: 322  RDRQTGEIFEILDGLMLKDGFLYKRVSIGSVICWGVQPSDMELLKFSSVGKDGDEHLNWV 381

Query: 1764 SSVYNARKKMKSSETADVKGASEQGNGFNLHDLVLFGRKGFGVIIDLGKDGIKILKGDTA 1585
            SSVY+ R KM+ +E AD +  +++GNGFNLHD VLFG K FGVII + KDG +ILKG   
Sbjct: 382  SSVYHGRNKMRPTEAADQQVLAKKGNGFNLHDFVLFGHKAFGVIIAVEKDGFRILKGGVE 441

Query: 1584 GQEVMTIKFEDIKSRCVDKMFTASDCHRKTIYINDSVKVSDGPLEGREGTVRHMYKGTLF 1405
            G EV+T+K +DIKS CVDKMFTASD + KTI IND+VKV +GPL+ ++G V+HMYKGTLF
Sbjct: 442  GPEVVTVKIQDIKSACVDKMFTASDRYMKTISINDTVKVLEGPLQDKQGIVKHMYKGTLF 501

Query: 1404 IYDENQEENSGLFCAKSDLCENSTPPKDSSFRKGGNKSSSSFNQSPVRSCEQEDSSHTFR 1225
            IYDEN+ ENSG FCAKS  CEN    K       G KSS SF+Q+P+ S E++D SH F 
Sbjct: 502  IYDENETENSGFFCAKSASCENMKESK-------GEKSSHSFSQAPMGSYEEQDRSHGFN 554

Query: 1224 -NRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQFLSIP 1048
              R++E +Q FSIGQTLRIRKGPLKGYLCRVV +YRSDVTVK+DSLVK+ITVE ++LS+P
Sbjct: 555  WRRQTERDQVFSIGQTLRIRKGPLKGYLCRVVGVYRSDVTVKVDSLVKIITVEAEYLSVP 614

Query: 1047 NIKRDFAAEMPSDIFGTQERFT-GGLSGNGEQTVVTSSWDGASSSWQALSTSTLFG-NNN 874
            N+KRD +A   S+ FGTQER + G  + NG+  V   S+     SWQA   S     +NN
Sbjct: 615  NVKRDDSAATTSNPFGTQERLSIGQHAENGQWDVGVPSF--GRDSWQAFPASNFSDVDNN 672

Query: 873  DQKTEQEQGADPWGSKVSLAAGDREQGADPWGSHASIVAGDHEGSDPWGSKLVPVATDHK 694
              K ++   ADPWGSKV   A      AD W  H+S      +  D WG      A+   
Sbjct: 673  GHKADEGHDADPWGSKVISGA-----RADAW--HSS------KAMDGWGK----AASSSG 715

Query: 693  QGADPW-----GSNNSISAGDCEQGADPWGCNKSISAGDQGGTDPWGSKLVPVASGQRQG 529
            +    W     G   +  A +C + AD W   K+++   +  T+  GSK     SG   G
Sbjct: 716  EQDSQWNMTAAGEKVTDQARNCIEDADGWN-GKALA---KTSTEIDGSKKSKPQSG---G 768

Query: 528  ADPWGRNI--SGGSTDKEER-ADPWGGKTA--LGDSSHSDKAFDSW--VKVSGTSGEMNS 370
               WGR    SG + D  E     W  + A  LGDS  +      W     S   G+  S
Sbjct: 769  DGGWGRGNFGSGNNLDPSENVTGNWDKQRADNLGDSLKNSDGVSGWDRAATSKDKGKDLS 828

Query: 369  WNKS 358
            W++S
Sbjct: 829  WDRS 832


>ref|XP_020091605.1| protein RNA-directed DNA methylation 3 isoform X3 [Ananas comosus]
          Length = 1714

 Score =  585 bits (1509), Expect = 0.0
 Identities = 335/669 (50%), Positives = 434/669 (64%), Gaps = 19/669 (2%)
 Frame = -1

Query: 2304 KACDVVEACKGFFNIYATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQ 2125
            KA DV EACKGF NIY  R+ LVP  E+ HLLS+RNK C IS+G+WVRMK+G YKGDL Q
Sbjct: 201  KANDVSEACKGFCNIYPGRINLVPPSEVSHLLSSRNKSCGISQGSWVRMKSGKYKGDLAQ 260

Query: 2124 VVDYDDARKRATIKLVPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIR 1945
            VV+ DD RKR  IKL+PRIDLQAI+KK+GGG+SLK A VP PRLISS EL+ FR  IE R
Sbjct: 261  VVNLDDGRKRVMIKLIPRIDLQAISKKFGGGLSLKHAAVPAPRLISSHELDEFRPLIETR 320

Query: 1944 RDRHTGEYFEILDGLMLKDGYLYKKVSIASIVFWGVQPSKDELLKFTEMSKAEEEDVSWL 1765
            RDR +GE FE+LDG+MLKDGY+YK VS  S+VFWGVQPS+ ELLKF+ ++K + ED+ W+
Sbjct: 321  RDRQSGEVFEVLDGMMLKDGYMYKWVSNGSVVFWGVQPSESELLKFSNVNKDDSEDLDWV 380

Query: 1764 SSVYNARKKMKSSETADVKGASEQGNGFNLHDLVLFGRKGFGVIIDLGKDGIKILKGDTA 1585
            SSVY+ RKK++ ++ +D    + + N + LHDLVLFG+K FGVI+ + KDG++ILKG T 
Sbjct: 381  SSVYSGRKKVRLTDDSDNVATTSRKNEYKLHDLVLFGQKDFGVIVTVEKDGVRILKGGTE 440

Query: 1584 GQEVMTIKFEDIKSRCVDKMFTASDCHRKTIYINDSVKVSDGPLEGREGTVRHMYKGTLF 1405
            G  V+T++ +DIKS CVDKMFTA D H KTI +ND VKV +G LEGR+G V+H+Y+G++F
Sbjct: 441  GSAVVTLRKQDIKSGCVDKMFTALDRHSKTISVNDIVKVLEGSLEGRQGIVKHLYRGSIF 500

Query: 1404 IYDENQEENSGLFCAKSDLCENSTPPKDS--SFRKG-GNKSSSSFNQSPVRSCEQEDSSH 1234
            IYDEN+ ENSG FCAKS+ CE     ++S  SF    G+ S+S F++ P  S E +DSS 
Sbjct: 501  IYDENETENSGFFCAKSESCEKIKKSRESVNSFDDNLGDGSASLFSEPPTISFENQDSSS 560

Query: 1233 -TFRNRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQFL 1057
               R R+ + +  FSIGQTLRI KGPLKGYLCRVVRI+RS+VTVKLDSLVK+ITV+ +FL
Sbjct: 561  GAGRRRQYDRDSLFSIGQTLRICKGPLKGYLCRVVRIFRSEVTVKLDSLVKIITVDAKFL 620

Query: 1056 SIPNIKRDFAAEMPSDIFGTQER-FTGGLSGNG-EQTVVTSSWDG-----ASSSWQALST 898
            S+P  KRD +    SD+FGTQE    G  S +G E     SSWD       S  WQ  S 
Sbjct: 621  SVPTRKRDDSTGAASDLFGTQEMPSIGPFSADGTESQPGRSSWDSPLPSFGSDGWQPFSA 680

Query: 897  STL-FGNNNDQKTEQEQGADPWGSKVSLAAGDREQGADPWGSHASIVAGDHEGSDPWGSK 721
            S L    N D KT+     DPWGSKV       +Q AD W ++A+  +GD   S  W   
Sbjct: 681  SKLSAAGNTDNKTDD---VDPWGSKVK-----SDQSADTW-ANAAAPSGDQNSS--WDKS 729

Query: 720  LVPVATDHKQGADPW--GSNNSISAGDCEQGADPWGCNKSIS-AGDQGGTDPWGSKLVPV 550
                A+     AD W   SN+  + G  +  +D  G  K  + A D GG+   G+K+  +
Sbjct: 730  TTNAASGQ---ADTWQNNSNDWSNKGSQKSTSDAGGWEKEKTLASDSGGSWGTGNKISNL 786

Query: 549  ASGQRQGADPWGRNISGGSTDKEE-RADPWGGKTALGDSSHSDKAFDSWVKVSGTSGEM- 376
             + +  G + W +     S DK++ +   W        S       DSW  V G +  M 
Sbjct: 787  DNSKTGGDNAWDK----ASNDKDKGKGSSWNEPNNWTKSEAVTSKTDSW-DVKGKAIAMD 841

Query: 375  --NSWNKSE 355
              ++W K++
Sbjct: 842  DGDTWGKAK 850


>ref|XP_020091606.1| protein RNA-directed DNA methylation 3 isoform X4 [Ananas comosus]
          Length = 1705

 Score =  585 bits (1508), Expect = 0.0
 Identities = 335/670 (50%), Positives = 434/670 (64%), Gaps = 20/670 (2%)
 Frame = -1

Query: 2304 KACDVVEACKGFFNIYATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQ 2125
            KA DV EACKGF NIY  R+ LVP  E+ HLLS+RNK C IS+G+WVRMK+G YKGDL Q
Sbjct: 201  KANDVSEACKGFCNIYPGRINLVPPSEVSHLLSSRNKSCGISQGSWVRMKSGKYKGDLAQ 260

Query: 2124 VVDYDDARKRATIKLVPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIR 1945
            VV+ DD RKR  IKL+PRIDLQAI+KK+GGG+SLK A VP PRLISS EL+ FR  IE R
Sbjct: 261  VVNLDDGRKRVMIKLIPRIDLQAISKKFGGGLSLKHAAVPAPRLISSHELDEFRPLIETR 320

Query: 1944 RDRHTGEYFEILDGLMLKDGYLYKKVSIASIVFWGVQPSKDELLKFTEMSKAEEEDVSWL 1765
            RDR +GE FE+LDG+MLKDGY+YK VS  S+VFWGVQPS+ ELLKF+ ++K + ED+ W+
Sbjct: 321  RDRQSGEVFEVLDGMMLKDGYMYKWVSNGSVVFWGVQPSESELLKFSNVNKDDSEDLDWV 380

Query: 1764 SSVYNARKKMKSSETADVKGASEQGNGFNLHDLVLFGRKGFGVIIDLGKDGIKILKGDTA 1585
            SSVY+ RKK++ ++ +D    + + N + LHDLVLFG+K FGVI+ + KDG++ILKG T 
Sbjct: 381  SSVYSGRKKVRLTDDSDNVATTSRKNEYKLHDLVLFGQKDFGVIVTVEKDGVRILKGGTE 440

Query: 1584 GQEVMTIKFEDIKSRCVDKMFTASDCHRKTIYINDSVKVSDGPLEGREGTVRHMYKGTLF 1405
            G  V+T++ +DIKS CVDKMFTA D H KTI +ND VKV +G LEGR+G V+H+Y+G++F
Sbjct: 441  GSAVVTLRKQDIKSGCVDKMFTALDRHSKTISVNDIVKVLEGSLEGRQGIVKHLYRGSIF 500

Query: 1404 IYDENQEENSGLFCAKSDLCENSTPPKDS--SFRKG--GNKSSSSFNQSPVRSCEQEDSS 1237
            IYDEN+ ENSG FCAKS+ CE     ++S  SF     G+ S+S F++ P  S E +DSS
Sbjct: 501  IYDENETENSGFFCAKSESCEKIKKSRESVNSFDDNLQGDGSASLFSEPPTISFENQDSS 560

Query: 1236 H-TFRNRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQF 1060
                R R+ + +  FSIGQTLRI KGPLKGYLCRVVRI+RS+VTVKLDSLVK+ITV+ +F
Sbjct: 561  SGAGRRRQYDRDSLFSIGQTLRICKGPLKGYLCRVVRIFRSEVTVKLDSLVKIITVDAKF 620

Query: 1059 LSIPNIKRDFAAEMPSDIFGTQER-FTGGLSGNG-EQTVVTSSWDG-----ASSSWQALS 901
            LS+P  KRD +    SD+FGTQE    G  S +G E     SSWD       S  WQ  S
Sbjct: 621  LSVPTRKRDDSTGAASDLFGTQEMPSIGPFSADGTESQPGRSSWDSPLPSFGSDGWQPFS 680

Query: 900  TSTL-FGNNNDQKTEQEQGADPWGSKVSLAAGDREQGADPWGSHASIVAGDHEGSDPWGS 724
             S L    N D KT+     DPWGSKV       +Q AD W ++A+  +GD   S  W  
Sbjct: 681  ASKLSAAGNTDNKTDD---VDPWGSKVK-----SDQSADTW-ANAAAPSGDQNSS--WDK 729

Query: 723  KLVPVATDHKQGADPW--GSNNSISAGDCEQGADPWGCNKSIS-AGDQGGTDPWGSKLVP 553
                 A+     AD W   SN+  + G  +  +D  G  K  + A D GG+   G+K+  
Sbjct: 730  STTNAASGQ---ADTWQNNSNDWSNKGSQKSTSDAGGWEKEKTLASDSGGSWGTGNKISN 786

Query: 552  VASGQRQGADPWGRNISGGSTDKEE-RADPWGGKTALGDSSHSDKAFDSWVKVSGTSGEM 376
            + + +  G + W +     S DK++ +   W        S       DSW  V G +  M
Sbjct: 787  LDNSKTGGDNAWDK----ASNDKDKGKGSSWNEPNNWTKSEAVTSKTDSW-DVKGKAIAM 841

Query: 375  ---NSWNKSE 355
               ++W K++
Sbjct: 842  DDGDTWGKAK 851


>ref|XP_020091604.1| protein RNA-directed DNA methylation 3 isoform X2 [Ananas comosus]
          Length = 1714

 Score =  585 bits (1508), Expect = 0.0
 Identities = 335/670 (50%), Positives = 434/670 (64%), Gaps = 20/670 (2%)
 Frame = -1

Query: 2304 KACDVVEACKGFFNIYATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQ 2125
            KA DV EACKGF NIY  R+ LVP  E+ HLLS+RNK C IS+G+WVRMK+G YKGDL Q
Sbjct: 201  KANDVSEACKGFCNIYPGRINLVPPSEVSHLLSSRNKSCGISQGSWVRMKSGKYKGDLAQ 260

Query: 2124 VVDYDDARKRATIKLVPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIR 1945
            VV+ DD RKR  IKL+PRIDLQAI+KK+GGG+SLK A VP PRLISS EL+ FR  IE R
Sbjct: 261  VVNLDDGRKRVMIKLIPRIDLQAISKKFGGGLSLKHAAVPAPRLISSHELDEFRPLIETR 320

Query: 1944 RDRHTGEYFEILDGLMLKDGYLYKKVSIASIVFWGVQPSKDELLKFTEMSKAEEEDVSWL 1765
            RDR +GE FE+LDG+MLKDGY+YK VS  S+VFWGVQPS+ ELLKF+ ++K + ED+ W+
Sbjct: 321  RDRQSGEVFEVLDGMMLKDGYMYKWVSNGSVVFWGVQPSESELLKFSNVNKDDSEDLDWV 380

Query: 1764 SSVYNARKKMKSSETADVKGASEQGNGFNLHDLVLFGRKGFGVIIDLGKDGIKILKGDTA 1585
            SSVY+ RKK++ ++ +D    + + N + LHDLVLFG+K FGVI+ + KDG++ILKG T 
Sbjct: 381  SSVYSGRKKVRLTDDSDNVATTSRKNEYKLHDLVLFGQKDFGVIVTVEKDGVRILKGGTE 440

Query: 1584 GQEVMTIKFEDIKSRCVDKMFTASDCHRKTIYINDSVKVSDGPLEGREGTVRHMYKGTLF 1405
            G  V+T++ +DIKS CVDKMFTA D H KTI +ND VKV +G LEGR+G V+H+Y+G++F
Sbjct: 441  GSAVVTLRKQDIKSGCVDKMFTALDRHSKTISVNDIVKVLEGSLEGRQGIVKHLYRGSIF 500

Query: 1404 IYDENQEENSGLFCAKSDLCENSTPPKDS--SFRKG--GNKSSSSFNQSPVRSCEQEDSS 1237
            IYDEN+ ENSG FCAKS+ CE     ++S  SF     G+ S+S F++ P  S E +DSS
Sbjct: 501  IYDENETENSGFFCAKSESCEKIKKSRESVNSFDDNLQGDGSASLFSEPPTISFENQDSS 560

Query: 1236 H-TFRNRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQF 1060
                R R+ + +  FSIGQTLRI KGPLKGYLCRVVRI+RS+VTVKLDSLVK+ITV+ +F
Sbjct: 561  SGAGRRRQYDRDSLFSIGQTLRICKGPLKGYLCRVVRIFRSEVTVKLDSLVKIITVDAKF 620

Query: 1059 LSIPNIKRDFAAEMPSDIFGTQER-FTGGLSGNG-EQTVVTSSWDG-----ASSSWQALS 901
            LS+P  KRD +    SD+FGTQE    G  S +G E     SSWD       S  WQ  S
Sbjct: 621  LSVPTRKRDDSTGAASDLFGTQEMPSIGPFSADGTESQPGRSSWDSPLPSFGSDGWQPFS 680

Query: 900  TSTL-FGNNNDQKTEQEQGADPWGSKVSLAAGDREQGADPWGSHASIVAGDHEGSDPWGS 724
             S L    N D KT+     DPWGSKV       +Q AD W ++A+  +GD   S  W  
Sbjct: 681  ASKLSAAGNTDNKTDD---VDPWGSKVK-----SDQSADTW-ANAAAPSGDQNSS--WDK 729

Query: 723  KLVPVATDHKQGADPW--GSNNSISAGDCEQGADPWGCNKSIS-AGDQGGTDPWGSKLVP 553
                 A+     AD W   SN+  + G  +  +D  G  K  + A D GG+   G+K+  
Sbjct: 730  STTNAASGQ---ADTWQNNSNDWSNKGSQKSTSDAGGWEKEKTLASDSGGSWGTGNKISN 786

Query: 552  VASGQRQGADPWGRNISGGSTDKEE-RADPWGGKTALGDSSHSDKAFDSWVKVSGTSGEM 376
            + + +  G + W +     S DK++ +   W        S       DSW  V G +  M
Sbjct: 787  LDNSKTGGDNAWDK----ASNDKDKGKGSSWNEPNNWTKSEAVTSKTDSW-DVKGKAIAM 841

Query: 375  ---NSWNKSE 355
               ++W K++
Sbjct: 842  DDGDTWGKAK 851


>ref|XP_020091602.1| protein RNA-directed DNA methylation 3 isoform X1 [Ananas comosus]
          Length = 1715

 Score =  585 bits (1508), Expect = 0.0
 Identities = 335/670 (50%), Positives = 434/670 (64%), Gaps = 20/670 (2%)
 Frame = -1

Query: 2304 KACDVVEACKGFFNIYATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQ 2125
            KA DV EACKGF NIY  R+ LVP  E+ HLLS+RNK C IS+G+WVRMK+G YKGDL Q
Sbjct: 201  KANDVSEACKGFCNIYPGRINLVPPSEVSHLLSSRNKSCGISQGSWVRMKSGKYKGDLAQ 260

Query: 2124 VVDYDDARKRATIKLVPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIR 1945
            VV+ DD RKR  IKL+PRIDLQAI+KK+GGG+SLK A VP PRLISS EL+ FR  IE R
Sbjct: 261  VVNLDDGRKRVMIKLIPRIDLQAISKKFGGGLSLKHAAVPAPRLISSHELDEFRPLIETR 320

Query: 1944 RDRHTGEYFEILDGLMLKDGYLYKKVSIASIVFWGVQPSKDELLKFTEMSKAEEEDVSWL 1765
            RDR +GE FE+LDG+MLKDGY+YK VS  S+VFWGVQPS+ ELLKF+ ++K + ED+ W+
Sbjct: 321  RDRQSGEVFEVLDGMMLKDGYMYKWVSNGSVVFWGVQPSESELLKFSNVNKDDSEDLDWV 380

Query: 1764 SSVYNARKKMKSSETADVKGASEQGNGFNLHDLVLFGRKGFGVIIDLGKDGIKILKGDTA 1585
            SSVY+ RKK++ ++ +D    + + N + LHDLVLFG+K FGVI+ + KDG++ILKG T 
Sbjct: 381  SSVYSGRKKVRLTDDSDNVATTSRKNEYKLHDLVLFGQKDFGVIVTVEKDGVRILKGGTE 440

Query: 1584 GQEVMTIKFEDIKSRCVDKMFTASDCHRKTIYINDSVKVSDGPLEGREGTVRHMYKGTLF 1405
            G  V+T++ +DIKS CVDKMFTA D H KTI +ND VKV +G LEGR+G V+H+Y+G++F
Sbjct: 441  GSAVVTLRKQDIKSGCVDKMFTALDRHSKTISVNDIVKVLEGSLEGRQGIVKHLYRGSIF 500

Query: 1404 IYDENQEENSGLFCAKSDLCENSTPPKDS--SFRKG--GNKSSSSFNQSPVRSCEQEDSS 1237
            IYDEN+ ENSG FCAKS+ CE     ++S  SF     G+ S+S F++ P  S E +DSS
Sbjct: 501  IYDENETENSGFFCAKSESCEKIKKSRESVNSFDDNLQGDGSASLFSEPPTISFENQDSS 560

Query: 1236 H-TFRNRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQF 1060
                R R+ + +  FSIGQTLRI KGPLKGYLCRVVRI+RS+VTVKLDSLVK+ITV+ +F
Sbjct: 561  SGAGRRRQYDRDSLFSIGQTLRICKGPLKGYLCRVVRIFRSEVTVKLDSLVKIITVDAKF 620

Query: 1059 LSIPNIKRDFAAEMPSDIFGTQER-FTGGLSGNG-EQTVVTSSWDG-----ASSSWQALS 901
            LS+P  KRD +    SD+FGTQE    G  S +G E     SSWD       S  WQ  S
Sbjct: 621  LSVPTRKRDDSTGAASDLFGTQEMPSIGPFSADGTESQPGRSSWDSPLPSFGSDGWQPFS 680

Query: 900  TSTL-FGNNNDQKTEQEQGADPWGSKVSLAAGDREQGADPWGSHASIVAGDHEGSDPWGS 724
             S L    N D KT+     DPWGSKV       +Q AD W ++A+  +GD   S  W  
Sbjct: 681  ASKLSAAGNTDNKTDD---VDPWGSKVK-----SDQSADTW-ANAAAPSGDQNSS--WDK 729

Query: 723  KLVPVATDHKQGADPW--GSNNSISAGDCEQGADPWGCNKSIS-AGDQGGTDPWGSKLVP 553
                 A+     AD W   SN+  + G  +  +D  G  K  + A D GG+   G+K+  
Sbjct: 730  STTNAASGQ---ADTWQNNSNDWSNKGSQKSTSDAGGWEKEKTLASDSGGSWGTGNKISN 786

Query: 552  VASGQRQGADPWGRNISGGSTDKEE-RADPWGGKTALGDSSHSDKAFDSWVKVSGTSGEM 376
            + + +  G + W +     S DK++ +   W        S       DSW  V G +  M
Sbjct: 787  LDNSKTGGDNAWDK----ASNDKDKGKGSSWNEPNNWTKSEAVTSKTDSW-DVKGKAIAM 841

Query: 375  ---NSWNKSE 355
               ++W K++
Sbjct: 842  DDGDTWGKAK 851


>gb|AQK94717.1| Protein RNA-directed DNA methylation 3 [Zea mays]
          Length = 925

 Score =  556 bits (1433), Expect = 0.0
 Identities = 317/680 (46%), Positives = 425/680 (62%), Gaps = 31/680 (4%)
 Frame = -1

Query: 2304 KACDVVEACKGFFNIYATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQ 2125
            KACDV EACKGF ++Y +R+  VP+ E+P LLS+R KP  IS+GTW+RMKNGNYKGDL Q
Sbjct: 62   KACDVTEACKGFCSVYTSRITSVPAAEVPSLLSSRTKPFEISRGTWIRMKNGNYKGDLAQ 121

Query: 2124 VVDYDDARKRATIKLVPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIR 1945
            VV  DD RK+  IK+VPR+DL AI+KK+GG VSLK A VP PRLISSQELE FR HIEI+
Sbjct: 122  VVSVDDGRKKVMIKIVPRVDLHAISKKFGGAVSLKGAAVPAPRLISSQELEFFRPHIEIK 181

Query: 1944 RDRHTGEYFEILDGLMLKDGYLYKKVSIASIVFWGVQPSKDELLKFTE--MSKAEEEDVS 1771
            RDR TGE FE+LDGLM KDG+LYKKV+++S+++WG+QP++ ELLKF+    ++A  +D+ 
Sbjct: 182  RDRQTGEVFEVLDGLMFKDGFLYKKVALSSLIYWGIQPTETELLKFSSSPSNRASADDLD 241

Query: 1770 WLSSVYNARK--------------KMKSSETADVKGAS-----EQGNGFNLHDLVLFGRK 1648
            WLS +Y ++K              K++SS+ +D+K ++     ++ + FNLHDLVL+GRK
Sbjct: 242  WLSGMYGSKKRNLPEKRDMESSSSKIRSSKASDLKASTSTENYDENDEFNLHDLVLYGRK 301

Query: 1647 GFGVIIDLGKDGIKILKGDTAGQEVMTIKFEDIKSRCVDKMFTASDCHRKTIYINDSVKV 1468
             FGVI+ + KDG +ILKG   G  V  ++ +DIK  CVDKMFTA D  +KTI IND+V V
Sbjct: 302  DFGVIVAVEKDGFRILKGGPEGSAV-KVRKQDIKKGCVDKMFTAVDHQKKTISINDTVNV 360

Query: 1467 SDGPLEGREGTVRHMYKGTLFIYDENQEENSGLFCAKSDLCENSTPPKDSSFRKGGNKSS 1288
             +GP +G++G V+H+Y G LFIY+E++ EN G FCA+S  CE       SS  +  + ++
Sbjct: 361  VEGPFQGKQGVVKHLYLGILFIYNESESENCGFFCAQSGSCEKIRKGLGSSTTESSDFTT 420

Query: 1287 SSFNQSPVRSCEQEDSSHTFRNRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVT 1108
              F   P  + EQ     T R  RS   Q FSIGQ LRIRKGPLKGYLCRVVRI+R+DVT
Sbjct: 421  PMF---PEPAYEQNGHRDTERPYRSTREQLFSIGQMLRIRKGPLKGYLCRVVRIFRNDVT 477

Query: 1107 VKLDSLVKVITVEEQFLSIPNIKRDFAAEMPSDIFGTQE-RFTGGLSGNGEQTVVTSSWD 931
            VKLDSL+K++TV+   LS+P  + D  +  P+  FG+Q+  F G  +G        +SWD
Sbjct: 478  VKLDSLLKIVTVQADLLSVPANRGDNLSGAPASKFGSQDTSFFGSEAGK-------TSWD 530

Query: 930  G-----ASSSWQALSTSTLFGNNNDQKTEQEQGADPWGSKVSLAAGDREQGADPWGSHAS 766
                   S SWQ  S+STL   N   ++E    ADPW  K S      +  +DPWG    
Sbjct: 531  NGLPSFGSDSWQPFSSSTLSVQNAGGESE----ADPWSKKTS-----AKDDSDPWGKKTD 581

Query: 765  IVAGDHEGSDPWGSKLVPVATDHKQGADPWGSNNSISAGDCEQGADPWGCNKSISAGDQG 586
               GD   SD WG K     TD    +DPWG   ++SA D +  ++PWG     SA   G
Sbjct: 582  ---GD---SDRWGKK-----TD--GDSDPWG-KEAVSAADGD--SNPWGKETVPSAA--G 623

Query: 585  GTDPWGSKLVPVASGQRQGADPWGRNISGGSTDKEERAD---PWGGKTALGDSSHSDKAF 415
             +DPWG K+V  A G    +D WG+  +  + D E+       W  +  +G    SD A 
Sbjct: 624  DSDPWGKKVVSSADGD---SDSWGKKATSSAVDTEKEGSGGTAWDKQAGVGG---SDAAG 677

Query: 414  DSWVK-VSGTSGEMNSWNKS 358
             SW + V   S + ++W ++
Sbjct: 678  SSWDRAVVNESEKSDNWGEA 697


>gb|OAY66311.1| Protein RNA-directed DNA methylation 3 [Ananas comosus]
          Length = 1701

 Score =  577 bits (1486), Expect = 0.0
 Identities = 334/669 (49%), Positives = 431/669 (64%), Gaps = 19/669 (2%)
 Frame = -1

Query: 2304 KACDVVEACKGFFNIYATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQ 2125
            KA DV EACKGF NIY  R+ LVP  E+ HLLS+RNK C IS+G+WVRMK+G YKGDL Q
Sbjct: 201  KANDVSEACKGFCNIYPGRINLVPPSEVSHLLSSRNKSCGISQGSWVRMKSGKYKGDLAQ 260

Query: 2124 VVDYDDARKRATIKLVPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIR 1945
            VV+ DD RKR  IKL+PRIDLQAI+KK+GGG+SLK A VP PRLISS ELE     IE R
Sbjct: 261  VVNLDDGRKRVMIKLIPRIDLQAISKKFGGGLSLKHAAVPAPRLISSHELEPL---IETR 317

Query: 1944 RDRHTGEYFEILDGLMLKDGYLYKKVSIASIVFWGVQPSKDELLKFTEMSKAEEEDVSWL 1765
            RDR +GE FE+LDG+MLKDGY+YK VS  S+VFWGVQPS+ ELLKF+ ++K + ED+ W+
Sbjct: 318  RDRQSGEVFEVLDGMMLKDGYMYKWVSNGSVVFWGVQPSESELLKFSNVNKDDSEDLDWV 377

Query: 1764 SSVYNARKKMKSSETADVKGASEQGNGFNLHDLVLFGRKGFGVIIDLGKDGIKILKGDTA 1585
            SSVY+ RKK++ ++ +D    + + N + LHDLVLFG+K FGVI+ + KDG++ILKG T 
Sbjct: 378  SSVYSGRKKVRLTDDSDNVATTSRKNEYKLHDLVLFGQKDFGVIVTVEKDGVRILKGGTE 437

Query: 1584 GQEVMTIKFEDIKSRCVDKMFTASDCHRKTIYINDSVKVSDGPLEGREGTVRHMYKGTLF 1405
            G  V+T++ +DIKS CVDKMFTA D H KTI +ND VKV +G LEGR+G V+H+Y+G++F
Sbjct: 438  GSAVVTLRKQDIKSGCVDKMFTALDRHSKTISVNDIVKVLEGSLEGRQGIVKHLYRGSIF 497

Query: 1404 IYDENQEENSGLFCAKSDLCENSTPPKDS--SFRKG-GNKSSSSFNQSPVRSCEQEDSSH 1234
            IYDEN+ ENSG FCAKS+ CE     ++S  SF    G+ S+S F++ P  S E +DSS 
Sbjct: 498  IYDENETENSGFFCAKSESCEKIKKSRESVNSFDDNLGDGSASLFSEPPTISFENQDSSS 557

Query: 1233 -TFRNRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQFL 1057
               R R+ + +  FSIGQTLRI KGPLKGYLCRVVRI+RS+VTVKLDSLVK+ITV+ +FL
Sbjct: 558  GAGRRRQYDRDSLFSIGQTLRICKGPLKGYLCRVVRIFRSEVTVKLDSLVKIITVDAKFL 617

Query: 1056 SIPNIKRDFAAEMPSDIFGTQER-FTGGLSGNG-EQTVVTSSWDG-----ASSSWQALST 898
            S+P  KRD +    SD+FGTQE    G  S +G E     SSWD       S  WQ  S 
Sbjct: 618  SVPTRKRDDSTGAASDLFGTQEMPSIGPFSADGTESQPGRSSWDSPLPSFGSDGWQPFSA 677

Query: 897  STL-FGNNNDQKTEQEQGADPWGSKVSLAAGDREQGADPWGSHASIVAGDHEGSDPWGSK 721
            S L    N D KT+     DPWGSKV       +Q AD W ++A+  +GD   S  W   
Sbjct: 678  SKLSAAGNTDNKTDD---VDPWGSKVK-----SDQSADTW-ANAAAPSGDQNSS--WDKS 726

Query: 720  LVPVATDHKQGADPW--GSNNSISAGDCEQGADPWGCNKSIS-AGDQGGTDPWGSKLVPV 550
                A+     AD W   SN+  + G  +  +D  G  K  + A D GG+   G+K   +
Sbjct: 727  TTNAASGQ---ADTWQNNSNDWSNKGSQKSTSDAGGWEKEKTLASDSGGSWGTGNKTSNL 783

Query: 549  ASGQRQGADPWGRNISGGSTDKEE-RADPWGGKTALGDSSHSDKAFDSWVKVSGTSGEM- 376
             + +  G + W +     S DK++ +   W        S       DSW  V G +  M 
Sbjct: 784  DNSKTGGDNAWDK----ASNDKDKGKGSSWNEPNNWTKSEAVTSKTDSW-DVKGKAIAMD 838

Query: 375  --NSWNKSE 355
              ++W K++
Sbjct: 839  DGDTWGKAK 847


>ref|XP_004961584.1| protein RNA-directed DNA methylation 3 [Setaria italica]
          Length = 1702

 Score =  576 bits (1484), Expect = 0.0
 Identities = 321/704 (45%), Positives = 433/704 (61%), Gaps = 55/704 (7%)
 Frame = -1

Query: 2304 KACDVVEACKGFFNIYATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQ 2125
            KACDV EACKGF ++YA+R+  VP+ E+P LLS+R KP  IS+GTWVRMKNGNYKGDL Q
Sbjct: 215  KACDVTEACKGFCSVYASRIISVPAAEVPSLLSSRTKPFEISRGTWVRMKNGNYKGDLAQ 274

Query: 2124 VVDYDDARKRATIKLVPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIR 1945
            VV  DD RKR  IK++PR+DL AI++KYGG +SLKEA VP PRLISSQELE FR HIE++
Sbjct: 275  VVSEDDGRKRVLIKIIPRVDLHAISRKYGGAISLKEAVVPAPRLISSQELEFFRPHIEMK 334

Query: 1944 RDRHTGEYFEILDGLMLKDGYLYKKVSIASIVFWGVQPSKDELLKFTE--MSKAEEEDVS 1771
            RDR TGE FE+LDGLM KDG+LYK+V+++S+++WG+QP++ ELLKF+   +++A  +D+ 
Sbjct: 335  RDRQTGEVFEVLDGLMFKDGFLYKRVALSSLIYWGIQPTETELLKFSSSPINRASADDLD 394

Query: 1770 WLSSVYNARK--------------KMKSSETADVKGASE---QGNGFNLHDLVLFGRKGF 1642
            W+SS+Y  +K              K KSS+ +    ++E     + FNLHDLVLFGRK F
Sbjct: 395  WVSSIYGPKKRNLPAERGIKSPSSKTKSSKASKASTSTENYDDNDEFNLHDLVLFGRKDF 454

Query: 1641 GVIIDLGKDGIKILKGDTAGQEVMTIKFEDIKSRCVDKMFTASDCHRKTIYINDSVKVSD 1462
            GVII + KDG++ILKG   G  V T+K +DIK  CVDKMFTA D  +K I IND+V V +
Sbjct: 455  GVIIAIEKDGLRILKGGPEGSAV-TVKKQDIKKGCVDKMFTAVDRQKKIISINDTVNVLE 513

Query: 1461 GPLEGREGTVRHMYKGTLFIYDENQEENSGLFCAKSDLCENSTPPKDSSFRKGGNKSSSS 1282
            GP +G++G V+H+Y GTLFIY+E++ EN G FCA+   CEN    K+SS  +  +     
Sbjct: 514  GPFQGKQGVVKHLYMGTLFIYNESESENCGFFCAQCGSCENVKKRKESSTTENLDNPIPM 573

Query: 1281 FNQSPVRSCEQEDSSHTFRNRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVK 1102
            F++      EQ +   T R  RS   Q FSIGQ LRIRKGPLKGYLCRVV+I+R+DVTVK
Sbjct: 574  FSE----PYEQNEHRDTERPYRSTREQLFSIGQMLRIRKGPLKGYLCRVVKIFRNDVTVK 629

Query: 1101 LDSLVKVITVEEQFLSIPNIKRDFAAEMPSDIFGTQERFTGGLSGNGEQTVVTSSWDG-- 928
            LDSL+K++TV+ +FLS+P  + D ++  P+  FG+Q+    G   +       +SWD   
Sbjct: 630  LDSLLKIVTVQAEFLSVPANRGDNSSGAPAGNFGSQDTSFFGSEAD------KASWDNGL 683

Query: 927  ---ASSSWQALSTSTLFGNNNDQKTEQ--------------------EQGADPWGSKVSL 817
                S SWQ  S+STL   N   ++E                     +  +DPWG+KV +
Sbjct: 684  PSFGSDSWQPFSSSTLPAQNAGGESESDPWCKKSSAGGESDPWGKKTDSDSDPWGNKV-V 742

Query: 816  AAGDREQGADPWGSHASIVAGDHEGSDPWGSKLVPVATDHKQGADPWGSNNSISAGDCEQ 637
             +GD +  +DPWG    +VA     SDPWG K+V  A      +DPWG          + 
Sbjct: 743  PSGDGD--SDPWGK--KVVAPADGDSDPWGKKVVVPADG---DSDPWGKK---VVAPADG 792

Query: 636  GADPWGCNKSISAGDQGGTDPWGSKLVPVASGQRQGADPWGRNISGGSTDKEERADPWGG 457
             +DPWG  K + A   G +DPWG K+V  A G    +DPWG+ +   +   +  +DPW  
Sbjct: 793  DSDPWG--KKVMAPSDGDSDPWGKKVVAPADGD---SDPWGKKVVAPA---DGDSDPWAK 844

Query: 456  KTALG-----------DSSHSDKAFDSWVKVSGTSGEMNSWNKS 358
             T                S S K +D    V G+    +SW+++
Sbjct: 845  NTTSSAFRVLNTGTTQKESSSGKVWDKQAGVGGSDAAGSSWDRT 888



 Score = 74.3 bits (181), Expect = 1e-09
 Identities = 57/211 (27%), Positives = 85/211 (40%), Gaps = 4/211 (1%)
 Frame = -1

Query: 981  GGLSGNGEQTVVTSSWDGASSSWQALS--TSTLFGNNNDQKTEQEQGADPWGSKVSLAAG 808
            GG S   + T    SW G   +W A +  ++  + ++   K+  E     W S       
Sbjct: 1195 GGSSDWNKDTSNKGSWGG--DNWNATNPPSNQPWSSSGGTKSYGENKPSTWNSSEDNKTS 1252

Query: 807  DREQGADPWGSHASIVAGDHEGSDPWGSKLVPVATDHKQGADPWGSNNSISAGDCEQGAD 628
              EQ  DPW S  +   G  + +D W SK+     +   G     + +S S G  E   D
Sbjct: 1253 VGEQD-DPWASKVASTEGKEQRNDTWASKMTSAGAEDSSGGWNTKTKDSCSDGGEESQND 1311

Query: 627  PWGCNKSISAGDQGGTDPWGSKL-VPVASGQRQGADPWGRNISGGSTDKEERA-DPWGGK 454
             W      + G +  TDPW SK+   V S    G+    R+ +   T  EE+A DPW  K
Sbjct: 1312 SWANKIGSNKGKEQETDPWASKVPSTVGSDDNNGS----RSTTAKGTPSEEKADDPWSSK 1367

Query: 453  TALGDSSHSDKAFDSWVKVSGTSGEMNSWNK 361
                   + +   DSW   S    + +SW+K
Sbjct: 1368 -----GGNDNIKIDSWGAGSSDGNQESSWSK 1393



 Score = 62.8 bits (151), Expect = 3e-06
 Identities = 34/87 (39%), Positives = 44/87 (50%)
 Frame = -2

Query: 266 ADPWGSKVSVTARDDTQGADPWGSKPALSAEDQGGADPWASKMAAGAREQEQGGDPWGNK 87
           +DPWG KV   A  D   +DPWG K  + A+  G +DPW  K+ A A   +   DPWG K
Sbjct: 749 SDPWGKKVVAPADGD---SDPWGKKVVVPAD--GDSDPWGKKVVAPA---DGDSDPWGKK 800

Query: 86  MATTSRAEQEQGADPWGSNVAGATDKD 6
           +   S  +    +DPWG  V    D D
Sbjct: 801 VMAPSDGD----SDPWGKKVVAPADGD 823



 Score = 61.6 bits (148), Expect = 8e-06
 Identities = 34/87 (39%), Positives = 43/87 (49%)
 Frame = -2

Query: 266 ADPWGSKVSVTARDDTQGADPWGSKPALSAEDQGGADPWASKMAAGAREQEQGGDPWGNK 87
           +DPWG KV V A  D   +DPWG K    A+  G +DPW  K+ A     +   DPWG K
Sbjct: 764 SDPWGKKVVVPADGD---SDPWGKKVVAPAD--GDSDPWGKKVMA---PSDGDSDPWGKK 815

Query: 86  MATTSRAEQEQGADPWGSNVAGATDKD 6
           +     A  +  +DPWG  V    D D
Sbjct: 816 VV----APADGDSDPWGKKVVAPADGD 838


>gb|PAN18741.1| hypothetical protein PAHAL_C02415 [Panicum hallii]
          Length = 1664

 Score =  569 bits (1467), Expect = e-180
 Identities = 325/686 (47%), Positives = 432/686 (62%), Gaps = 37/686 (5%)
 Frame = -1

Query: 2304 KACDVVEACKGFFNIYATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQ 2125
            KACDV EACKGF ++YA+R+  VP+ E+P LLS+R KP  IS+GTWVRMKNGNYKGDL Q
Sbjct: 207  KACDVTEACKGFCSVYASRITSVPAAEVPSLLSSRTKPFEISRGTWVRMKNGNYKGDLAQ 266

Query: 2124 VVDYDDARKRATIKLVPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIR 1945
            VV  D+ RKR  IK++PR+DL AI+KKYGG +SLK A VP PRLISSQELE FR HIE++
Sbjct: 267  VVSVDNGRKRVMIKIIPRVDLHAISKKYGGAISLKGAAVPAPRLISSQELEFFRPHIEMK 326

Query: 1944 RDRHTGEYFEILDGLMLKDGYLYKKVSIASIVFWGVQPSKDELLKFTE--MSKAEEEDVS 1771
            RDR TGE FE+LDGLM KDG+LYK+V+++S+++WG+QP++ ELLKF+   +++A  +D+ 
Sbjct: 327  RDRQTGEVFEVLDGLMFKDGFLYKRVALSSLIYWGIQPTETELLKFSSSPINRASADDLD 386

Query: 1770 WLSSVYNARK---------------KMKSSETADVKGASE---QGNGFNLHDLVLFGRKG 1645
            W+SS+Y  +K               KMKSS+T+    ++E     + FNLHDLVLFGRK 
Sbjct: 387  WVSSIYGPKKRNIPAKPDIKSSSSSKMKSSKTSKASISTEDFDDNDEFNLHDLVLFGRKD 446

Query: 1644 FGVIIDLGKDGIKILKGDTAGQEVMTIKFEDIKSRCVDKMFTASDCHRKTIYINDSVKVS 1465
            FGVII + KDG +ILKG   G  V T+K  DIK  CVDKMFTA D   K + IND+V V 
Sbjct: 447  FGVIIAIEKDGFRILKGGPEGSAV-TVKKNDIKKSCVDKMFTAVDRQNKIVSINDTVNVL 505

Query: 1464 DGPLEGREGTVRHMYKGTLFIYDENQEENSGLFCAKSDLCENSTPPKDSSFRKGGNKSSS 1285
            +GP +G++G V+H+Y G LFIY+E++ EN G FCA+   CEN    KD     GG+ + +
Sbjct: 506  EGPFQGKQGVVKHLYMGILFIYNESESENCGFFCAQCGSCENVKKRKD----LGGSTTEN 561

Query: 1284 SFNQSPV---RSCEQEDSSHTFRNRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSD 1114
              N  P+    S EQ +   T R  RS   Q FSIGQ LRIRKGPLKGYLCRVVRI+R+D
Sbjct: 562  LDNPFPMFAEPSYEQNEHRGTERPYRSTREQLFSIGQMLRIRKGPLKGYLCRVVRIFRND 621

Query: 1113 VTVKLDSLVKVITVEEQFLSIPNIKRDFAAEMPSDIFGTQERFTGGLSGNGEQTVVTSSW 934
            VTVKLDSL+K++TV+ +FLS+P  + D  +  P+  FG+Q+  T       E+T    SW
Sbjct: 622  VTVKLDSLLKIVTVQAEFLSVPANRGDNLSGAPAGNFGSQD--TSFFGSEAEKT----SW 675

Query: 933  DG-----ASSSWQALSTSTLFGNNNDQKTEQEQGADPWGSKVSLAAGDREQGADPWGSHA 769
            D       S SWQ  S+STL   N   ++E     DPW SK S A G+    +DPWG   
Sbjct: 676  DNGLPSFGSDSWQPFSSSTLPVQNTGGESEN----DPW-SKKSSAEGE----SDPWGKKT 726

Query: 768  SIVAGDHEGSDPWGSKLVPVATDHKQGADPWGSNNSISAGDCEQGADPWGCNKSISAGDQ 589
                GD    DPWG+K   VA      +DPWG+  + SA   +  +DPWG    ++    
Sbjct: 727  D---GD---PDPWGNK---VAHSADGDSDPWGNKVAPSA---DGDSDPWG--NKVAPSAY 772

Query: 588  GGTDPWGSKLVPVASGQRQGADPWGRNI--------SGGSTDKEERAD-PWGGKTALGDS 436
            G +DPWG K+V  A G    +D WG+          + G+  KE  +D  WG +  +G S
Sbjct: 773  GDSDPWGKKVVTPAHGD---SDAWGKKTTSSAVGVWNAGAAQKESSSDNAWGKQAGVGRS 829

Query: 435  SHSDKAFDSWVKVSGTSGEMNSWNKS 358
              +  ++D  V V+  S + ++W ++
Sbjct: 830  DAAGSSWDGTV-VNKESEKSDNWGEA 854



 Score = 65.5 bits (158), Expect = 5e-07
 Identities = 50/197 (25%), Positives = 78/197 (39%), Gaps = 4/197 (2%)
 Frame = -1

Query: 939  SWDGASSSWQALSTSTL--FGNNNDQKTEQEQGADPWGSK-VSLAAGDREQGADPWGSHA 769
            +W    SS+    +S    +G  ++          PW S  V+ + G+ +          
Sbjct: 1143 NWGNRGSSYWDKDSSNKGSWGGGDNWNATNPPSNQPWSSSGVTKSFGENKPSTWNSSKDN 1202

Query: 768  SIVAGDHEGSDPWGSKLVPVATDHKQGADPWGSNNSISAGDCEQGADPWGCNKSISAGDQ 589
                G  + +D W SK+     +   G     + +S + G  E+  DPW      +   +
Sbjct: 1203 KPSVGKEQQNDTWASKMTSAGAEDNSGGWNTRAKDSCTDGGEERQNDPWANKAGTNKDKE 1262

Query: 588  GGTDPWGSKLVPVASGQRQGADPWGRNISGGSTDKEERA-DPWGGKTALGDSSHSDKAFD 412
              TDPW SK VP + G       W  N +   T  EE+A DPW  K     S+ + K  D
Sbjct: 1263 QETDPWTSK-VPSSVGSDDNNSSW--NTTAKDTPSEEKAGDPWSSK----GSNDNIKKTD 1315

Query: 411  SWVKVSGTSGEMNSWNK 361
            SW   S    + +SW+K
Sbjct: 1316 SWGAGSSGGNQESSWSK 1332


>gb|PAN18742.1| hypothetical protein PAHAL_C02415 [Panicum hallii]
          Length = 1679

 Score =  569 bits (1467), Expect = e-180
 Identities = 325/686 (47%), Positives = 432/686 (62%), Gaps = 37/686 (5%)
 Frame = -1

Query: 2304 KACDVVEACKGFFNIYATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQ 2125
            KACDV EACKGF ++YA+R+  VP+ E+P LLS+R KP  IS+GTWVRMKNGNYKGDL Q
Sbjct: 207  KACDVTEACKGFCSVYASRITSVPAAEVPSLLSSRTKPFEISRGTWVRMKNGNYKGDLAQ 266

Query: 2124 VVDYDDARKRATIKLVPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIR 1945
            VV  D+ RKR  IK++PR+DL AI+KKYGG +SLK A VP PRLISSQELE FR HIE++
Sbjct: 267  VVSVDNGRKRVMIKIIPRVDLHAISKKYGGAISLKGAAVPAPRLISSQELEFFRPHIEMK 326

Query: 1944 RDRHTGEYFEILDGLMLKDGYLYKKVSIASIVFWGVQPSKDELLKFTE--MSKAEEEDVS 1771
            RDR TGE FE+LDGLM KDG+LYK+V+++S+++WG+QP++ ELLKF+   +++A  +D+ 
Sbjct: 327  RDRQTGEVFEVLDGLMFKDGFLYKRVALSSLIYWGIQPTETELLKFSSSPINRASADDLD 386

Query: 1770 WLSSVYNARK---------------KMKSSETADVKGASE---QGNGFNLHDLVLFGRKG 1645
            W+SS+Y  +K               KMKSS+T+    ++E     + FNLHDLVLFGRK 
Sbjct: 387  WVSSIYGPKKRNIPAKPDIKSSSSSKMKSSKTSKASISTEDFDDNDEFNLHDLVLFGRKD 446

Query: 1644 FGVIIDLGKDGIKILKGDTAGQEVMTIKFEDIKSRCVDKMFTASDCHRKTIYINDSVKVS 1465
            FGVII + KDG +ILKG   G  V T+K  DIK  CVDKMFTA D   K + IND+V V 
Sbjct: 447  FGVIIAIEKDGFRILKGGPEGSAV-TVKKNDIKKSCVDKMFTAVDRQNKIVSINDTVNVL 505

Query: 1464 DGPLEGREGTVRHMYKGTLFIYDENQEENSGLFCAKSDLCENSTPPKDSSFRKGGNKSSS 1285
            +GP +G++G V+H+Y G LFIY+E++ EN G FCA+   CEN    KD     GG+ + +
Sbjct: 506  EGPFQGKQGVVKHLYMGILFIYNESESENCGFFCAQCGSCENVKKRKD----LGGSTTEN 561

Query: 1284 SFNQSPV---RSCEQEDSSHTFRNRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSD 1114
              N  P+    S EQ +   T R  RS   Q FSIGQ LRIRKGPLKGYLCRVVRI+R+D
Sbjct: 562  LDNPFPMFAEPSYEQNEHRGTERPYRSTREQLFSIGQMLRIRKGPLKGYLCRVVRIFRND 621

Query: 1113 VTVKLDSLVKVITVEEQFLSIPNIKRDFAAEMPSDIFGTQERFTGGLSGNGEQTVVTSSW 934
            VTVKLDSL+K++TV+ +FLS+P  + D  +  P+  FG+Q+  T       E+T    SW
Sbjct: 622  VTVKLDSLLKIVTVQAEFLSVPANRGDNLSGAPAGNFGSQD--TSFFGSEAEKT----SW 675

Query: 933  DG-----ASSSWQALSTSTLFGNNNDQKTEQEQGADPWGSKVSLAAGDREQGADPWGSHA 769
            D       S SWQ  S+STL   N   ++E     DPW SK S A G+    +DPWG   
Sbjct: 676  DNGLPSFGSDSWQPFSSSTLPVQNTGGESEN----DPW-SKKSSAEGE----SDPWGKKT 726

Query: 768  SIVAGDHEGSDPWGSKLVPVATDHKQGADPWGSNNSISAGDCEQGADPWGCNKSISAGDQ 589
                GD    DPWG+K   VA      +DPWG+  + SA   +  +DPWG    ++    
Sbjct: 727  D---GD---PDPWGNK---VAHSADGDSDPWGNKVAPSA---DGDSDPWG--NKVAPSAY 772

Query: 588  GGTDPWGSKLVPVASGQRQGADPWGRNI--------SGGSTDKEERAD-PWGGKTALGDS 436
            G +DPWG K+V  A G    +D WG+          + G+  KE  +D  WG +  +G S
Sbjct: 773  GDSDPWGKKVVTPAHGD---SDAWGKKTTSSAVGVWNAGAAQKESSSDNAWGKQAGVGRS 829

Query: 435  SHSDKAFDSWVKVSGTSGEMNSWNKS 358
              +  ++D  V V+  S + ++W ++
Sbjct: 830  DAAGSSWDGTV-VNKESEKSDNWGEA 854



 Score = 77.0 bits (188), Expect = 1e-10
 Identities = 55/196 (28%), Positives = 83/196 (42%), Gaps = 3/196 (1%)
 Frame = -1

Query: 939  SWDGASSSWQALS--TSTLFGNNNDQKTEQEQGADPWGSKVSLAAGDREQGADPWGSHAS 766
            SW G   +W A +  ++  + ++   K+  E     W S         EQ  DPW S  +
Sbjct: 1161 SW-GGGDNWNATNPPSNQPWSSSGVTKSFGENKPSTWNSSKDNKPSVGEQD-DPWASKVA 1218

Query: 765  IVAGDHEGSDPWGSKLVPVATDHKQGADPWGSNNSISAGDCEQGADPWGCNKSISAGDQG 586
             + G  + +D W SK+     +   G     + +S + G  E+  DPW      +   + 
Sbjct: 1219 SIEGKEQQNDTWASKMTSAGAEDNSGGWNTRAKDSCTDGGEERQNDPWANKAGTNKDKEQ 1278

Query: 585  GTDPWGSKLVPVASGQRQGADPWGRNISGGSTDKEERA-DPWGGKTALGDSSHSDKAFDS 409
             TDPW SK VP + G       W  N +   T  EE+A DPW  K     S+ + K  DS
Sbjct: 1279 ETDPWTSK-VPSSVGSDDNNSSW--NTTAKDTPSEEKAGDPWSSK----GSNDNIKKTDS 1331

Query: 408  WVKVSGTSGEMNSWNK 361
            W   S    + +SW+K
Sbjct: 1332 WGAGSSGGNQESSWSK 1347



 Score = 45.4 bits (106), Expect(2) = 8e-07
 Identities = 25/85 (29%), Positives = 37/85 (43%)
 Frame = -2

Query: 263  DPWGSKVSVTARDDTQGADPWGSKPALSAEDQGGADPWASKMAAGAREQEQGGDPWGNKM 84
            DPW +K   T +D  Q  DPW SK   S         W +  A     +E+ GDPW +K 
Sbjct: 1264 DPWANKAG-TNKDKEQETDPWTSKVPSSVGSDDNNSSW-NTTAKDTPSEEKAGDPWSSKG 1321

Query: 83   ATTSRAEQEQGADPWGSNVAGATDK 9
            +     +  +  D WG+  +G   +
Sbjct: 1322 SN----DNIKKTDSWGAGSSGGNQE 1342



 Score = 38.9 bits (89), Expect(2) = 8e-07
 Identities = 51/212 (24%), Positives = 74/212 (34%), Gaps = 6/212 (2%)
 Frame = -1

Query: 981  GGLSGNGEQTVVTSSWDGASS---SWQALSTSTLFGNNNDQKTEQEQGADPWGSKVSLAA 811
            G   G  +Q    SSW G S+   SW++           D K + E G D  G +     
Sbjct: 1059 GDFDGRNDQGSWKSSWGGESAGRTSWRS-----------DSKVDNEVG-DSSGYRGRGRG 1106

Query: 810  GDREQGADPWGSHASIVAGDHEGSDPWGSKLVPVATDHKQGADPWGSNNSISAGDCEQGA 631
            G  + G    G       GD   S  +G +      D   G + WG+  S          
Sbjct: 1107 GRGQYGGRGRGRDNGWRNGDRSDSG-FGRE-----NDSADGQN-WGNRGSSYWDKDSSNK 1159

Query: 630  DPWGCNKSISAGDQGGTDPWGSKLVPVASGQRQGADPWGRNISGGSTDKEERADPWGGKT 451
              WG   + +A +     PW S  V  + G+ +    W  +         E+ DPW  K 
Sbjct: 1160 GSWGGGDNWNATNPPSNQPWSSSGVTKSFGENK-PSTWNSS-KDNKPSVGEQDDPWASKV 1217

Query: 450  ALGDSSHSDKAFDSWV-KVSGTSGEMNS--WN 364
            A  +        D+W  K++    E NS  WN
Sbjct: 1218 ASIEGKEQQN--DTWASKMTSAGAEDNSGGWN 1247


>gb|AQK94722.1| Protein RNA-directed DNA methylation 3 [Zea mays]
          Length = 967

 Score =  550 bits (1418), Expect = e-180
 Identities = 313/672 (46%), Positives = 411/672 (61%), Gaps = 50/672 (7%)
 Frame = -1

Query: 2304 KACDVVEACKGFFNIYATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQ 2125
            KACDV EACKGF ++Y +R+  VP+ E+P LLS+R KP  IS+GTW+RMKNGNYKGDL Q
Sbjct: 62   KACDVTEACKGFCSVYTSRITSVPAAEVPSLLSSRTKPFEISRGTWIRMKNGNYKGDLAQ 121

Query: 2124 VVDYDDARKRATIKLVPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIR 1945
            VV  DD RK+  IK+VPR+DL AI+KK+GG VSLK A VP PRLISSQELE FR HIEI+
Sbjct: 122  VVSVDDGRKKVMIKIVPRVDLHAISKKFGGAVSLKGAAVPAPRLISSQELEFFRPHIEIK 181

Query: 1944 RDRHTGEYFEILDGLMLKDGYLYKKVSIASIVFWGVQPSKDELLKFTE--MSKAEEEDVS 1771
            RDR TGE FE+LDGLM KDG+LYKKV+++S+++WG+QP++ ELLKF+    ++A  +D+ 
Sbjct: 182  RDRQTGEVFEVLDGLMFKDGFLYKKVALSSLIYWGIQPTETELLKFSSSPSNRASADDLD 241

Query: 1770 WLSSVYNARK--------------KMKSSETADVKGAS-----EQGNGFNLHDLVLFGRK 1648
            WLS +Y ++K              K++SS+ +D+K ++     ++ + FNLHDLVL+GRK
Sbjct: 242  WLSGMYGSKKRNLPEKRDMESSSSKIRSSKASDLKASTSTENYDENDEFNLHDLVLYGRK 301

Query: 1647 GFGVIIDLGKDGIKILKGDTAGQEVMTIKFEDIKSRCVDKMFTASDCHRKTIYINDSVKV 1468
             FGVI+ + KDG +ILKG   G  V  ++ +DIK  CVDKMFTA D  +KTI IND+V V
Sbjct: 302  DFGVIVAVEKDGFRILKGGPEGSAV-KVRKQDIKKGCVDKMFTAVDHQKKTISINDTVNV 360

Query: 1467 SDGPLEGREGTVRHMYKGTLFIYDENQEENSGLFCAKSDLCENSTPPKDSSFRKGGNKSS 1288
             +GP +G++G V+H+Y G LFIY+E++ EN G FCA+S  CE       SS  +  + ++
Sbjct: 361  VEGPFQGKQGVVKHLYLGILFIYNESESENCGFFCAQSGSCEKIRKGLGSSTTESSDFTT 420

Query: 1287 SSFNQSPVRSCEQEDSSHTFRNRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVT 1108
              F   P  + EQ     T R  RS   Q FSIGQ LRIRKGPLKGYLCRVVRI+R+DVT
Sbjct: 421  PMF---PEPAYEQNGHRDTERPYRSTREQLFSIGQMLRIRKGPLKGYLCRVVRIFRNDVT 477

Query: 1107 VKLDSLVKVITVEEQFLSIPNIKRDFAAEMPSDIFGTQE-RFTGGLSGNGEQTVVTSSWD 931
            VKLDSL+K++TV+   LS+P  + D  +  P+  FG+Q+  F G  +G        +SWD
Sbjct: 478  VKLDSLLKIVTVQADLLSVPANRGDNLSGAPASKFGSQDTSFFGSEAGK-------TSWD 530

Query: 930  G-----ASSSWQALSTSTLFGNNN---------DQKTEQEQGADPWGSKV---SLAAGDR 802
                   S SWQ  S+STL   N           +KT  +  +DPWG K    S   G +
Sbjct: 531  NGLPSFGSDSWQPFSSSTLSVQNAGGESEADPWSKKTSAKDDSDPWGKKTDGDSDRWGKK 590

Query: 801  EQG-ADPWGSHA-SIVAGDHEGSDPWGSKLVPVATDHKQGADPWGSNNSISAGDCEQGAD 628
              G +DPWG  A S   GD   S+PWG + VP A      +DPWG     SA   +  +D
Sbjct: 591  TDGDSDPWGKEAVSAADGD---SNPWGKETVPSAAG---DSDPWGKKVVSSA---DGDSD 641

Query: 627  PWGCNKSISAGDQ-------GGTDPWGSKLVPVASGQRQGADPWGR--NISGGSTDKEER 475
             W   K  S G         GG+D  GS        + + +D WG    +    T  E  
Sbjct: 642  SWDTEKEGSGGTAWDKQAGVGGSDAAGSSWDRAVVNESEKSDNWGEACRVMDMGTGAEAD 701

Query: 474  ADPWGGKTALGD 439
             DPWG K    D
Sbjct: 702  TDPWGSKVKAVD 713


>gb|AQK94721.1| Protein RNA-directed DNA methylation 3 [Zea mays]
          Length = 1116

 Score =  550 bits (1418), Expect = e-178
 Identities = 313/672 (46%), Positives = 411/672 (61%), Gaps = 50/672 (7%)
 Frame = -1

Query: 2304 KACDVVEACKGFFNIYATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQ 2125
            KACDV EACKGF ++Y +R+  VP+ E+P LLS+R KP  IS+GTW+RMKNGNYKGDL Q
Sbjct: 211  KACDVTEACKGFCSVYTSRITSVPAAEVPSLLSSRTKPFEISRGTWIRMKNGNYKGDLAQ 270

Query: 2124 VVDYDDARKRATIKLVPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIR 1945
            VV  DD RK+  IK+VPR+DL AI+KK+GG VSLK A VP PRLISSQELE FR HIEI+
Sbjct: 271  VVSVDDGRKKVMIKIVPRVDLHAISKKFGGAVSLKGAAVPAPRLISSQELEFFRPHIEIK 330

Query: 1944 RDRHTGEYFEILDGLMLKDGYLYKKVSIASIVFWGVQPSKDELLKFTE--MSKAEEEDVS 1771
            RDR TGE FE+LDGLM KDG+LYKKV+++S+++WG+QP++ ELLKF+    ++A  +D+ 
Sbjct: 331  RDRQTGEVFEVLDGLMFKDGFLYKKVALSSLIYWGIQPTETELLKFSSSPSNRASADDLD 390

Query: 1770 WLSSVYNARK--------------KMKSSETADVKGAS-----EQGNGFNLHDLVLFGRK 1648
            WLS +Y ++K              K++SS+ +D+K ++     ++ + FNLHDLVL+GRK
Sbjct: 391  WLSGMYGSKKRNLPEKRDMESSSSKIRSSKASDLKASTSTENYDENDEFNLHDLVLYGRK 450

Query: 1647 GFGVIIDLGKDGIKILKGDTAGQEVMTIKFEDIKSRCVDKMFTASDCHRKTIYINDSVKV 1468
             FGVI+ + KDG +ILKG   G  V  ++ +DIK  CVDKMFTA D  +KTI IND+V V
Sbjct: 451  DFGVIVAVEKDGFRILKGGPEGSAV-KVRKQDIKKGCVDKMFTAVDHQKKTISINDTVNV 509

Query: 1467 SDGPLEGREGTVRHMYKGTLFIYDENQEENSGLFCAKSDLCENSTPPKDSSFRKGGNKSS 1288
             +GP +G++G V+H+Y G LFIY+E++ EN G FCA+S  CE       SS  +  + ++
Sbjct: 510  VEGPFQGKQGVVKHLYLGILFIYNESESENCGFFCAQSGSCEKIRKGLGSSTTESSDFTT 569

Query: 1287 SSFNQSPVRSCEQEDSSHTFRNRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVT 1108
              F   P  + EQ     T R  RS   Q FSIGQ LRIRKGPLKGYLCRVVRI+R+DVT
Sbjct: 570  PMF---PEPAYEQNGHRDTERPYRSTREQLFSIGQMLRIRKGPLKGYLCRVVRIFRNDVT 626

Query: 1107 VKLDSLVKVITVEEQFLSIPNIKRDFAAEMPSDIFGTQE-RFTGGLSGNGEQTVVTSSWD 931
            VKLDSL+K++TV+   LS+P  + D  +  P+  FG+Q+  F G  +G        +SWD
Sbjct: 627  VKLDSLLKIVTVQADLLSVPANRGDNLSGAPASKFGSQDTSFFGSEAGK-------TSWD 679

Query: 930  G-----ASSSWQALSTSTLFGNNN---------DQKTEQEQGADPWGSKV---SLAAGDR 802
                   S SWQ  S+STL   N           +KT  +  +DPWG K    S   G +
Sbjct: 680  NGLPSFGSDSWQPFSSSTLSVQNAGGESEADPWSKKTSAKDDSDPWGKKTDGDSDRWGKK 739

Query: 801  EQG-ADPWGSHA-SIVAGDHEGSDPWGSKLVPVATDHKQGADPWGSNNSISAGDCEQGAD 628
              G +DPWG  A S   GD   S+PWG + VP A      +DPWG     SA   +  +D
Sbjct: 740  TDGDSDPWGKEAVSAADGD---SNPWGKETVPSAAG---DSDPWGKKVVSSA---DGDSD 790

Query: 627  PWGCNKSISAGDQ-------GGTDPWGSKLVPVASGQRQGADPWGR--NISGGSTDKEER 475
             W   K  S G         GG+D  GS        + + +D WG    +    T  E  
Sbjct: 791  SWDTEKEGSGGTAWDKQAGVGGSDAAGSSWDRAVVNESEKSDNWGEACRVMDMGTGAEAD 850

Query: 474  ADPWGGKTALGD 439
             DPWG K    D
Sbjct: 851  TDPWGSKVKAVD 862


>ref|XP_008656431.1| protein RNA-directed DNA methylation 3 isoform X1 [Zea mays]
 gb|AQK94714.1| Protein RNA-directed DNA methylation 3 [Zea mays]
          Length = 1592

 Score =  556 bits (1433), Expect = e-176
 Identities = 317/680 (46%), Positives = 425/680 (62%), Gaps = 31/680 (4%)
 Frame = -1

Query: 2304 KACDVVEACKGFFNIYATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQ 2125
            KACDV EACKGF ++Y +R+  VP+ E+P LLS+R KP  IS+GTW+RMKNGNYKGDL Q
Sbjct: 211  KACDVTEACKGFCSVYTSRITSVPAAEVPSLLSSRTKPFEISRGTWIRMKNGNYKGDLAQ 270

Query: 2124 VVDYDDARKRATIKLVPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIR 1945
            VV  DD RK+  IK+VPR+DL AI+KK+GG VSLK A VP PRLISSQELE FR HIEI+
Sbjct: 271  VVSVDDGRKKVMIKIVPRVDLHAISKKFGGAVSLKGAAVPAPRLISSQELEFFRPHIEIK 330

Query: 1944 RDRHTGEYFEILDGLMLKDGYLYKKVSIASIVFWGVQPSKDELLKFTE--MSKAEEEDVS 1771
            RDR TGE FE+LDGLM KDG+LYKKV+++S+++WG+QP++ ELLKF+    ++A  +D+ 
Sbjct: 331  RDRQTGEVFEVLDGLMFKDGFLYKKVALSSLIYWGIQPTETELLKFSSSPSNRASADDLD 390

Query: 1770 WLSSVYNARK--------------KMKSSETADVKGAS-----EQGNGFNLHDLVLFGRK 1648
            WLS +Y ++K              K++SS+ +D+K ++     ++ + FNLHDLVL+GRK
Sbjct: 391  WLSGMYGSKKRNLPEKRDMESSSSKIRSSKASDLKASTSTENYDENDEFNLHDLVLYGRK 450

Query: 1647 GFGVIIDLGKDGIKILKGDTAGQEVMTIKFEDIKSRCVDKMFTASDCHRKTIYINDSVKV 1468
             FGVI+ + KDG +ILKG   G  V  ++ +DIK  CVDKMFTA D  +KTI IND+V V
Sbjct: 451  DFGVIVAVEKDGFRILKGGPEGSAV-KVRKQDIKKGCVDKMFTAVDHQKKTISINDTVNV 509

Query: 1467 SDGPLEGREGTVRHMYKGTLFIYDENQEENSGLFCAKSDLCENSTPPKDSSFRKGGNKSS 1288
             +GP +G++G V+H+Y G LFIY+E++ EN G FCA+S  CE       SS  +  + ++
Sbjct: 510  VEGPFQGKQGVVKHLYLGILFIYNESESENCGFFCAQSGSCEKIRKGLGSSTTESSDFTT 569

Query: 1287 SSFNQSPVRSCEQEDSSHTFRNRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVT 1108
              F   P  + EQ     T R  RS   Q FSIGQ LRIRKGPLKGYLCRVVRI+R+DVT
Sbjct: 570  PMF---PEPAYEQNGHRDTERPYRSTREQLFSIGQMLRIRKGPLKGYLCRVVRIFRNDVT 626

Query: 1107 VKLDSLVKVITVEEQFLSIPNIKRDFAAEMPSDIFGTQE-RFTGGLSGNGEQTVVTSSWD 931
            VKLDSL+K++TV+   LS+P  + D  +  P+  FG+Q+  F G  +G        +SWD
Sbjct: 627  VKLDSLLKIVTVQADLLSVPANRGDNLSGAPASKFGSQDTSFFGSEAGK-------TSWD 679

Query: 930  G-----ASSSWQALSTSTLFGNNNDQKTEQEQGADPWGSKVSLAAGDREQGADPWGSHAS 766
                   S SWQ  S+STL   N   ++E    ADPW  K S      +  +DPWG    
Sbjct: 680  NGLPSFGSDSWQPFSSSTLSVQNAGGESE----ADPWSKKTS-----AKDDSDPWGKKTD 730

Query: 765  IVAGDHEGSDPWGSKLVPVATDHKQGADPWGSNNSISAGDCEQGADPWGCNKSISAGDQG 586
               GD   SD WG K     TD    +DPWG   ++SA D +  ++PWG     SA   G
Sbjct: 731  ---GD---SDRWGKK-----TD--GDSDPWG-KEAVSAADGD--SNPWGKETVPSAA--G 772

Query: 585  GTDPWGSKLVPVASGQRQGADPWGRNISGGSTDKEERAD---PWGGKTALGDSSHSDKAF 415
             +DPWG K+V  A G    +D WG+  +  + D E+       W  +  +G    SD A 
Sbjct: 773  DSDPWGKKVVSSADGD---SDSWGKKATSSAVDTEKEGSGGTAWDKQAGVGG---SDAAG 826

Query: 414  DSWVK-VSGTSGEMNSWNKS 358
             SW + V   S + ++W ++
Sbjct: 827  SSWDRAVVNESEKSDNWGEA 846


>gb|AQK87074.1| Protein RNA-directed DNA methylation 3 [Zea mays]
          Length = 1450

 Score =  545 bits (1404), Expect = e-173
 Identities = 319/701 (45%), Positives = 428/701 (61%), Gaps = 52/701 (7%)
 Frame = -1

Query: 2304 KACDVVEACKGFFNIYATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQ 2125
            KA  V EACKGF ++Y +R+  VP+ E+P LLS+R KP  IS+GTW+RMKNGNYKGDL Q
Sbjct: 62   KAGYVTEACKGFCSVYTSRITSVPATEVPSLLSSRTKPFEISRGTWIRMKNGNYKGDLAQ 121

Query: 2124 VVDYDDARKRATIKLVPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIR 1945
            VV+ D  RK+  IK++PR+DL AI+KK+GG VSLKEA VP PRLISSQELE FR HIEI+
Sbjct: 122  VVNMDSGRKKVMIKIIPRVDLHAISKKFGGAVSLKEAAVPAPRLISSQELEFFRPHIEIK 181

Query: 1944 RDRHTGEYFEILDGLMLKDGYLYKKVSIASIVFWGVQPSKDELLKFTE--MSKAEEEDVS 1771
            RDR TGE FE+LDGLM KDG+LYKKV+++S+++WG+QP++ ELLKF+    ++A  +D+ 
Sbjct: 182  RDRQTGEVFEVLDGLMFKDGFLYKKVALSSLIYWGIQPTETELLKFSSSPSNRASADDLD 241

Query: 1770 WLSSVYNARK--------------KMKSSETADVKGAS-----EQGNGFNLHDLVLFGRK 1648
            WLS +Y ++K              K+KSS+  D+KG++     +  + FNLHDLVL+GRK
Sbjct: 242  WLSGMYGSKKRNLPAERDMKSSSSKIKSSKAPDLKGSTSTENYDDNDEFNLHDLVLYGRK 301

Query: 1647 GFGVIIDLGKDGIKILKGDTAGQEVMTIKFEDIKSRCVDKMFTASDCHRKTIYINDSVKV 1468
             FGVII + KDG +ILKG   G  V T++ +DIK  CVDKMFTA D H+KTI IND+V V
Sbjct: 302  DFGVIIAVEKDGFRILKGGPEGSAV-TVRKQDIKKGCVDKMFTAVDHHKKTISINDTVNV 360

Query: 1467 SDGPLEGREGTVRHMYKGTLFIYDENQEENSGLFCAKSDLCENSTPPKDSSFRKGGNKSS 1288
             +GP +G++G V+H+Y G LFI++E++ EN G FCA+S  CE       SS  +  +  +
Sbjct: 361  VEGPFQGKQGLVKHLYLGILFIFNESESENCGFFCAQSGSCEKIRKGLGSSTTENSDFPT 420

Query: 1287 SSFNQSPVRSCEQEDSSHTFRNRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVT 1108
              F++    + EQ +  +T    RS   Q FSIGQ LRIRKGPLKGYLCRVVRI+R+DVT
Sbjct: 421  PMFSEP---AYEQNEHRNTEGPYRSTREQLFSIGQMLRIRKGPLKGYLCRVVRIFRNDVT 477

Query: 1107 VKLDSLVKVITVEEQFLSIPNIKRDFAAEMPSDIFGTQER-FTGGLSGNGEQTVVTSSWD 931
            VKLDSL+K++TV+   LS+P  + D  +  P+  FG+Q+  F G  +G        +SWD
Sbjct: 478  VKLDSLLKIVTVQADLLSVPANRGDNLSGAPASKFGSQDTPFFGSEAGK-------TSWD 530

Query: 930  G-----ASSSWQALSTSTLFGNNNDQKTEQEQGADPWGSKVSLAAGDREQGADPWGSHAS 766
                   S SWQ  S+STL   N   ++E    ADPW  K S      E  +DPWG    
Sbjct: 531  RGLPSFGSDSWQPFSSSTLPVQNAGAESE----ADPWCKKTS-----AEDDSDPWGKKTD 581

Query: 765  IVAGDHEGSDPWGSKLVPVATDHKQGADPWGSNNSIS-AGDCEQGADPWGCNKSISAGDQ 589
               GD   SDPWG + V  A       +PWG     S AGD    +DPWG  K + + D 
Sbjct: 582  ---GD---SDPWGKEAVSAADG---DCNPWGKETVPSAAGD----SDPWG--KKVFSAD- 625

Query: 588  GGTDPWGSKLVPVA-------SGQRQGA--DPWGRNISGGSTD-------------KEER 475
            G +DPWG K +  A       + Q++G+  + W +    G +D             + E+
Sbjct: 626  GDSDPWGKKAISSAVEVWNTSATQKEGSSGNAWDKQAGVGGSDAAGSSWDRAVVNKESEK 685

Query: 474  ADPWGGKTALGD--SSHSDKAFDSWVKVSGTSGEMNSWNKS 358
            +D WG    + D  +      + S VK     G  NSW K+
Sbjct: 686  SDNWGEACRVMDMGTGADTDPWGSKVKAVDMEGP-NSWEKA 725



 Score = 62.4 bits (150), Expect = 4e-06
 Identities = 52/208 (25%), Positives = 79/208 (37%), Gaps = 18/208 (8%)
 Frame = -1

Query: 930  GASSSWQALS--TSTLFGNNNDQKTEQEQGADPWGSKVSLAAGDREQGADPWGSHASIVA 757
            G   +W A +  ++  + ++   K+  +     W +         EQG DPW S  S   
Sbjct: 962  GGGDNWNATNPPSNQPWSSSGGTKSYGQNQPSTWNNPEDNKPSVGEQG-DPWASKVSSTE 1020

Query: 756  GDHEGSDPWGSKLVPVATDHKQGADPWGSNNSISAGDCEQGADPWGCNKSISAGDQGGTD 577
            G  + +D W SK+     +   G   W S         E+G+    CN     G+    D
Sbjct: 1021 GKGQQNDSWSSKMTSRGAEDTSGG--WDSK--------EKGSS---CN---GGGEGLQND 1064

Query: 576  PWGSKLVPVASGQRQGADPWGRNISG----------------GSTDKEERADPWGGKTAL 445
            PW +K +    G+ Q ADPW   +S                 G+   E+  DPW  K   
Sbjct: 1065 PWANK-IGSNEGKEQEADPWASKMSSAVGADDKNGTWDTTTKGTLSNEKADDPWNSKRGN 1123

Query: 444  GDSSHSDKAFDSWVKVSGTSGEMNSWNK 361
             D S   K  D+W   S    + +SW+K
Sbjct: 1124 DDDS---KKTDAWGAGSSGGNQESSWSK 1148