BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon24_contig00012887
         (536 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020269097.1| probable RNA-dependent RNA polymerase 1 [Asp...   248   3e-73
gb|OAY79234.1| RNA-dependent RNA polymerase 1, partial [Ananas c...   205   4e-58
ref|XP_020089659.1| probable RNA-dependent RNA polymerase 1 [Ana...   205   7e-58
ref|XP_020089658.1| probable RNA-dependent RNA polymerase 1 isof...   205   7e-58
ref|XP_020089657.1| probable RNA-dependent RNA polymerase 1 isof...   205   7e-58
ref|XP_020090854.1| probable RNA-dependent RNA polymerase 1 [Ana...   194   5e-54
ref|XP_008812977.1| PREDICTED: probable RNA-dependent RNA polyme...   190   1e-52
ref|XP_010917515.1| PREDICTED: probable RNA-dependent RNA polyme...   185   8e-51
ref|XP_020170071.1| probable RNA-dependent RNA polymerase 1 [Aeg...   184   1e-50
ref|XP_009381445.1| PREDICTED: probable RNA-dependent RNA polyme...   183   3e-50
gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare su...   182   5e-50
gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare]       181   2e-49
gb|EAY87440.1| hypothetical protein OsI_08849 [Oryza sativa Indi...   179   8e-49
gb|OVA04183.1| RNA-dependent RNA polymerase [Macleaya cordata]        177   1e-48
gb|ACH53360.1| RNA-directed RNA polymerase 1a, partial [Hordeum ...   177   4e-48
gb|AAR91037.1| RNA-directed RNA polymerase 2 [Hordeum vulgare su...   177   4e-48
ref|XP_020584591.1| probable RNA-dependent RNA polymerase 1 isof...   177   5e-48
ref|XP_011625384.1| probable RNA-dependent RNA polymerase 1 isof...   177   5e-48
gb|ERN11375.1| hypothetical protein AMTR_s00176p00039530 [Ambore...   177   5e-48
ref|XP_010917518.1| PREDICTED: probable RNA-dependent RNA polyme...   175   2e-47

>ref|XP_020269097.1| probable RNA-dependent RNA polymerase 1 [Asparagus officinalis]
 ref|XP_020269098.1| probable RNA-dependent RNA polymerase 1 [Asparagus officinalis]
 gb|ONK67125.1| uncharacterized protein A4U43_C06F15970 [Asparagus officinalis]
          Length = 1128

 Score =  248 bits (633), Expect = 3e-73
 Identities = 120/180 (66%), Positives = 147/180 (81%), Gaps = 2/180 (1%)
 Frame = +2

Query: 2   SKAFAIVQFLTSKDANTIYNALNETPLQYFYPKTYLKVQYMYRDIVPKPRKSLFVLEDAA 181
           S+A+A+VQF TSKDA  + +   +    + Y  +YLKV+Y  RDIVPKPRK+ F+LED  
Sbjct: 48  SRAYALVQFFTSKDAKIVSSLAQQN---FLYGNSYLKVEYAKRDIVPKPRKAWFILEDTE 104

Query: 182 LHLGCLISEVTLGVLWSCTDVEVHFGFHMKKISFFLAQGNQSYKLDLSYESIWDIQQRCP 361
           LH+GCLISE TLGVLWSCT VEVHFGF+MKKISF L QG+QS+KL+LS+ESIWDIQQ   
Sbjct: 105 LHIGCLISENTLGVLWSCTGVEVHFGFNMKKISFLLTQGSQSHKLELSFESIWDIQQHSL 164

Query: 362 SAQRSQFLVIQVEAAPRIYE--MPLQDSNLIHEDPSLNYFKETQDDRWIRTTDFTPSCSI 535
            ++ SQFLV+QV+AAPRI+E  +PLQ+S L+HEDPSLNY+KE QDD+WIRTTDFTP CSI
Sbjct: 165 PSENSQFLVVQVQAAPRIFEAPVPLQNSALVHEDPSLNYYKELQDDQWIRTTDFTPLCSI 224


>gb|OAY79234.1| RNA-dependent RNA polymerase 1, partial [Ananas comosus]
          Length = 3431

 Score =  205 bits (522), Expect = 4e-58
 Identities = 102/178 (57%), Positives = 133/178 (74%)
 Frame = +2

Query: 2    SKAFAIVQFLTSKDANTIYNALNETPLQYFYPKTYLKVQYMYRDIVPKPRKSLFVLEDAA 181
            SK++A+VQFLT   A  I    +   L+      YLK +YM RDIVPKPR SLFV+E A 
Sbjct: 2328 SKSYAVVQFLTEGQAKQIIYLADNCLLRC--QGYYLKARYMERDIVPKPRSSLFVVERAT 2385

Query: 182  LHLGCLISEVTLGVLWSCTDVEVHFGFHMKKISFFLAQGNQSYKLDLSYESIWDIQQRCP 361
            LH GC +S+ +  VLWS +DV V+FGF+++KI FFL++G+  YKL+LSYESIW+IQ    
Sbjct: 2386 LHFGCPVSKRSFCVLWSASDVHVNFGFNLRKIYFFLSKGSFEYKLELSYESIWEIQLHRS 2445

Query: 362  SAQRSQFLVIQVEAAPRIYEMPLQDSNLIHEDPSLNYFKETQDDRWIRTTDFTPSCSI 535
            S Q SQFL+ Q+ AAP+IYE+PL+ S+L+ EDP LNYFKET DD+WIR+TDF+PSCS+
Sbjct: 2446 SDQGSQFLLFQMAAAPKIYELPLRSSSLVQEDPLLNYFKETPDDKWIRSTDFSPSCSM 2503



 Score =  191 bits (486), Expect = 4e-53
 Identities = 96/182 (52%), Positives = 131/182 (71%), Gaps = 4/182 (2%)
 Frame = +2

Query: 2    SKAFAIVQFLTSKDANTIYNALNETPLQYFYPKTYLKVQYMYRDIVPKPRKSLFVLEDAA 181
            S+++A+VQFLT   A  I    + + L+      YLK +YM RDIVPKPR SLFV+E A 
Sbjct: 1196 SRSYAVVQFLTEGQAKQIIYLADNSLLRC--QGYYLKARYMKRDIVPKPRASLFVVEHAT 1253

Query: 182  LHLGCLISEVTLGVLWSCTDVEVHFGFHMKKISFFLAQGNQSYKLDLSYESIWDIQQRCP 361
            LH GC + + +  VLWS +DV V+FGF+++KI FF+++G+  YKL+LSYESIW+IQ    
Sbjct: 1254 LHFGCPVLKRSFCVLWSASDVRVNFGFNLRKIYFFVSKGSFEYKLELSYESIWEIQLHRS 1313

Query: 362  SAQRSQ----FLVIQVEAAPRIYEMPLQDSNLIHEDPSLNYFKETQDDRWIRTTDFTPSC 529
            S Q +     F+ +Q+ AAP+IYE+ L+ S L+HEDP LNYFKET DD+WIR+TDF+PSC
Sbjct: 1314 SDQETDFQFWFMKLQMAAAPKIYELALRSSGLVHEDPLLNYFKETPDDQWIRSTDFSPSC 1373

Query: 530  SI 535
            S+
Sbjct: 1374 SM 1375



 Score =  189 bits (479), Expect = 4e-52
 Identities = 96/178 (53%), Positives = 123/178 (69%)
 Frame = +2

Query: 2   SKAFAIVQFLTSKDANTIYNALNETPLQYFYPKTYLKVQYMYRDIVPKPRKSLFVLEDAA 181
           S+A+A VQF+    A  I N  +   L+      YL  QYM RDIVPKPR SLFV+E   
Sbjct: 85  SEAYASVQFVREWQAELIVNMADNRLLRC--QGYYLMAQYMERDIVPKPRSSLFVVERTI 142

Query: 182 LHLGCLISEVTLGVLWSCTDVEVHFGFHMKKISFFLAQGNQSYKLDLSYESIWDIQQRCP 361
           +H GC +S+ +  VLWS  DV V FGF+++K+  F +     YKL+LSYESIW+IQ    
Sbjct: 143 VHFGCPVSKRSFCVLWSAYDVHVTFGFNLRKLYLFFSMRGLEYKLELSYESIWEIQLHRS 202

Query: 362 SAQRSQFLVIQVEAAPRIYEMPLQDSNLIHEDPSLNYFKETQDDRWIRTTDFTPSCSI 535
           S Q SQFL+IQ+ AAP+IYE+PL  S L+H+DP LNYFKET DD+WIR+TDF+PSCS+
Sbjct: 203 SYQGSQFLLIQMAAAPKIYELPLCSSGLVHKDPFLNYFKETPDDQWIRSTDFSPSCSM 260


>ref|XP_020089659.1| probable RNA-dependent RNA polymerase 1 [Ananas comosus]
 ref|XP_020089661.1| probable RNA-dependent RNA polymerase 1 [Ananas comosus]
          Length = 1133

 Score =  205 bits (521), Expect = 7e-58
 Identities = 101/178 (56%), Positives = 134/178 (75%)
 Frame = +2

Query: 2   SKAFAIVQFLTSKDANTIYNALNETPLQYFYPKTYLKVQYMYRDIVPKPRKSLFVLEDAA 181
           S+++A+VQFLT   A  I    + + L+      YLK +YM RDIVPKPR SLFV+E A 
Sbjct: 48  SRSYAVVQFLTEGQAKQIIYLADNSLLRC--QGYYLKARYMERDIVPKPRSSLFVVERAT 105

Query: 182 LHLGCLISEVTLGVLWSCTDVEVHFGFHMKKISFFLAQGNQSYKLDLSYESIWDIQQRCP 361
           LH GC +S+ +  VLWS +DV V+FGF+++KI FFL++G+  YKL+LSYESIW+IQ    
Sbjct: 106 LHFGCPVSKRSFCVLWSASDVHVNFGFNLRKIYFFLSKGSFEYKLELSYESIWEIQLHRS 165

Query: 362 SAQRSQFLVIQVEAAPRIYEMPLQDSNLIHEDPSLNYFKETQDDRWIRTTDFTPSCSI 535
           S Q SQFL+ Q+ AAP+IYE+PL+ S+L+ EDP LNYFKET DD+WIR+TDF+PSCS+
Sbjct: 166 SDQGSQFLLFQMAAAPKIYELPLRSSSLVQEDPLLNYFKETPDDKWIRSTDFSPSCSM 223


>ref|XP_020089658.1| probable RNA-dependent RNA polymerase 1 isoform X2 [Ananas comosus]
          Length = 1133

 Score =  205 bits (521), Expect = 7e-58
 Identities = 104/179 (58%), Positives = 134/179 (74%), Gaps = 1/179 (0%)
 Frame = +2

Query: 2   SKAFAIVQFLTSKDANTI-YNALNETPLQYFYPKTYLKVQYMYRDIVPKPRKSLFVLEDA 178
           S+++A+VQFLT   A  I Y A N   +   Y   YLKV+YM RDIVPKPR SLFV+E A
Sbjct: 48  SRSYAVVQFLTEGQAKRIIYLADNSLLMCQGY---YLKVRYMKRDIVPKPRASLFVVEHA 104

Query: 179 ALHLGCLISEVTLGVLWSCTDVEVHFGFHMKKISFFLAQGNQSYKLDLSYESIWDIQQRC 358
            LH GC + + +  VLWS +DV V+FGF+++KI FF++QG+  YKL+LSYESIW+IQ   
Sbjct: 105 TLHFGCPVLKRSFCVLWSASDVRVNFGFNLRKIYFFVSQGSFKYKLELSYESIWEIQLHR 164

Query: 359 PSAQRSQFLVIQVEAAPRIYEMPLQDSNLIHEDPSLNYFKETQDDRWIRTTDFTPSCSI 535
            S Q SQFL+ Q+ AAP+IYE+ L+ S L+HEDP LNYFKET DD+WIR+TDF+PSCS+
Sbjct: 165 SSDQGSQFLLFQMAAAPKIYELALRSSGLVHEDPLLNYFKETPDDQWIRSTDFSPSCSM 223


>ref|XP_020089657.1| probable RNA-dependent RNA polymerase 1 isoform X1 [Ananas comosus]
          Length = 1147

 Score =  205 bits (521), Expect = 7e-58
 Identities = 104/179 (58%), Positives = 134/179 (74%), Gaps = 1/179 (0%)
 Frame = +2

Query: 2   SKAFAIVQFLTSKDANTI-YNALNETPLQYFYPKTYLKVQYMYRDIVPKPRKSLFVLEDA 178
           S+++A+VQFLT   A  I Y A N   +   Y   YLKV+YM RDIVPKPR SLFV+E A
Sbjct: 62  SRSYAVVQFLTEGQAKRIIYLADNSLLMCQGY---YLKVRYMKRDIVPKPRASLFVVEHA 118

Query: 179 ALHLGCLISEVTLGVLWSCTDVEVHFGFHMKKISFFLAQGNQSYKLDLSYESIWDIQQRC 358
            LH GC + + +  VLWS +DV V+FGF+++KI FF++QG+  YKL+LSYESIW+IQ   
Sbjct: 119 TLHFGCPVLKRSFCVLWSASDVRVNFGFNLRKIYFFVSQGSFKYKLELSYESIWEIQLHR 178

Query: 359 PSAQRSQFLVIQVEAAPRIYEMPLQDSNLIHEDPSLNYFKETQDDRWIRTTDFTPSCSI 535
            S Q SQFL+ Q+ AAP+IYE+ L+ S L+HEDP LNYFKET DD+WIR+TDF+PSCS+
Sbjct: 179 SSDQGSQFLLFQMAAAPKIYELALRSSGLVHEDPLLNYFKETPDDQWIRSTDFSPSCSM 237


>ref|XP_020090854.1| probable RNA-dependent RNA polymerase 1 [Ananas comosus]
 ref|XP_020090855.1| probable RNA-dependent RNA polymerase 1 [Ananas comosus]
 ref|XP_020090856.1| probable RNA-dependent RNA polymerase 1 [Ananas comosus]
          Length = 1133

 Score =  194 bits (493), Expect = 5e-54
 Identities = 98/178 (55%), Positives = 125/178 (70%)
 Frame = +2

Query: 2   SKAFAIVQFLTSKDANTIYNALNETPLQYFYPKTYLKVQYMYRDIVPKPRKSLFVLEDAA 181
           S+A+A VQF+T   A  I N  +   L+      YL  QYM RDIVPKPR SLFV+E   
Sbjct: 48  SEAYASVQFVTEWQAELIVNMADNRLLRC--QGYYLMAQYMERDIVPKPRSSLFVVERTI 105

Query: 182 LHLGCLISEVTLGVLWSCTDVEVHFGFHMKKISFFLAQGNQSYKLDLSYESIWDIQQRCP 361
           +H GC +S+ +  VLWS  DV V FGF+++K+  F + G   YKL+LSYESIW+IQ    
Sbjct: 106 VHFGCPVSKRSFCVLWSAYDVHVTFGFNLRKLYLFFSMGGLEYKLELSYESIWEIQLHRS 165

Query: 362 SAQRSQFLVIQVEAAPRIYEMPLQDSNLIHEDPSLNYFKETQDDRWIRTTDFTPSCSI 535
           S Q SQFL+IQ+ AAP+IYE+PL  S L+H+DP LNYFKET DD+WIR+TDF+PSCS+
Sbjct: 166 SYQGSQFLLIQMAAAPKIYELPLCSSGLVHKDPFLNYFKETPDDQWIRSTDFSPSCSM 223


>ref|XP_008812977.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Phoenix
           dactylifera]
 ref|XP_008812978.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Phoenix
           dactylifera]
          Length = 1131

 Score =  190 bits (482), Expect = 1e-52
 Identities = 95/178 (53%), Positives = 125/178 (70%)
 Frame = +2

Query: 2   SKAFAIVQFLTSKDANTIYNALNETPLQYFYPKTYLKVQYMYRDIVPKPRKSLFVLEDAA 181
           S+A+AIVQF+ +K A +I           +     LKV++M RDIVPKPR SLFVLE+  
Sbjct: 48  SRAYAIVQFIANKHAESI-----ACKRLVWVDGFVLKVRHMERDIVPKPRTSLFVLENTT 102

Query: 182 LHLGCLISEVTLGVLWSCTDVEVHFGFHMKKISFFLAQGNQSYKLDLSYESIWDIQQRCP 361
           +H G  +S+    VLWS  DV V+FGF M+KI FFL QG+ SYK +L+YESIW+IQ    
Sbjct: 103 VHFGSPVSQNKFSVLWSPKDVRVNFGFSMRKIYFFLVQGSHSYKFELAYESIWEIQLHHS 162

Query: 362 SAQRSQFLVIQVEAAPRIYEMPLQDSNLIHEDPSLNYFKETQDDRWIRTTDFTPSCSI 535
           S +  QFL+IQV AAP++YE+ L++S L+HEDP  NYFK+  DD+W+RTTDF+P CSI
Sbjct: 163 STKYLQFLLIQVVAAPKVYELSLRNSGLLHEDPEYNYFKDLPDDQWVRTTDFSPLCSI 220


>ref|XP_010917515.1| PREDICTED: probable RNA-dependent RNA polymerase 1 isoform X1
           [Elaeis guineensis]
 ref|XP_019704927.1| PREDICTED: probable RNA-dependent RNA polymerase 1 isoform X1
           [Elaeis guineensis]
 ref|XP_019704928.1| PREDICTED: probable RNA-dependent RNA polymerase 1 isoform X1
           [Elaeis guineensis]
          Length = 1129

 Score =  185 bits (469), Expect = 8e-51
 Identities = 94/178 (52%), Positives = 127/178 (71%)
 Frame = +2

Query: 2   SKAFAIVQFLTSKDANTIYNALNETPLQYFYPKTYLKVQYMYRDIVPKPRKSLFVLEDAA 181
           S+A+AIVQF T++ A +I +         +Y    LKV+ + RDIVPKPR SLF+LE+A 
Sbjct: 48  SRAYAIVQFTTNRHAESIAHKH-----LVWYDGFVLKVRDVERDIVPKPRTSLFILENAT 102

Query: 182 LHLGCLISEVTLGVLWSCTDVEVHFGFHMKKISFFLAQGNQSYKLDLSYESIWDIQQRCP 361
           LH G  +S+    VLWS  DV+V+FGF+++KI FFL++G  SYK +L+YESIW+IQ    
Sbjct: 103 LHFGSPVSQNKFSVLWSAMDVKVNFGFNLRKIYFFLSRGGHSYKFELAYESIWEIQLHRS 162

Query: 362 SAQRSQFLVIQVEAAPRIYEMPLQDSNLIHEDPSLNYFKETQDDRWIRTTDFTPSCSI 535
           S Q  QFL+IQV AAP+IYE+  ++S L+ EDP  NYFK+  DD+W+RTTDF+P CSI
Sbjct: 163 STQHLQFLLIQVVAAPKIYELFPRNSGLLLEDPIYNYFKDPPDDQWVRTTDFSPLCSI 220


>ref|XP_020170071.1| probable RNA-dependent RNA polymerase 1 [Aegilops tauschii subsp.
           tauschii]
 ref|XP_020170072.1| probable RNA-dependent RNA polymerase 1 [Aegilops tauschii subsp.
           tauschii]
          Length = 1116

 Score =  184 bits (468), Expect = 1e-50
 Identities = 91/178 (51%), Positives = 122/178 (68%)
 Frame = +2

Query: 2   SKAFAIVQFLTSKDANTIYNALNETPLQYFYPKTYLKVQYMYRDIVPKPRKSLFVLEDAA 181
           SK+FAIVQF +   A+ + NA     L+      +LK +Y  RDIVP+PR ++F L+DA 
Sbjct: 48  SKSFAIVQFQSEAHASLVLNAARRNALRS--GSNHLKARYAERDIVPRPRTTIFNLQDAT 105

Query: 182 LHLGCLISEVTLGVLWSCTDVEVHFGFHMKKISFFLAQGNQSYKLDLSYESIWDIQQRCP 361
           LH GCL+ E  L VLWS T+V V FGF MK+I F L   ++ YKL+LSYESIW+IQ   P
Sbjct: 106 LHFGCLLREKALSVLWSGTNVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRP 165

Query: 362 SAQRSQFLVIQVEAAPRIYEMPLQDSNLIHEDPSLNYFKETQDDRWIRTTDFTPSCSI 535
              + +FL+IQV+AAP+IYE  ++ S  +++DP  NYF++  DD+W RTTDFTPS SI
Sbjct: 166 PGLQKKFLLIQVQAAPKIYEQNIRRSGSMYDDPLFNYFRDDTDDQWTRTTDFTPSASI 223


>ref|XP_009381445.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Musa acuminata
           subsp. malaccensis]
          Length = 1134

 Score =  183 bits (465), Expect = 3e-50
 Identities = 93/178 (52%), Positives = 123/178 (69%)
 Frame = +2

Query: 2   SKAFAIVQFLTSKDANTIYNALNETPLQYFYPKTYLKVQYMYRDIVPKPRKSLFVLEDAA 181
           S  +AIVQF   +D   ++  + +  L Y     YL V+ M RDI+PKPRK LFVLE+  
Sbjct: 44  STVYAIVQFPRREDVQDLFVMIQQGKLSY--DGHYLTVRNMERDIIPKPRKPLFVLENVT 101

Query: 182 LHLGCLISEVTLGVLWSCTDVEVHFGFHMKKISFFLAQGNQSYKLDLSYESIWDIQQRCP 361
           LH GC +S+  L VL S  DV+V+FGF M+KI F L+ G  SYKL+L+YESIW+I+    
Sbjct: 102 LHFGCPLSQKRLSVLRSMEDVKVNFGFEMRKIYFLLSHGIHSYKLELAYESIWEIRLHRS 161

Query: 362 SAQRSQFLVIQVEAAPRIYEMPLQDSNLIHEDPSLNYFKETQDDRWIRTTDFTPSCSI 535
           S Q SQFLV+QV AAP+IYE P +++  ++EDP LNYF++  DD+W+RTTDFT S SI
Sbjct: 162 SVQNSQFLVVQVVAAPKIYETPSRNTGSLYEDPRLNYFRDLPDDQWVRTTDFTSSRSI 219


>gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare subsp. vulgare]
          Length = 1115

 Score =  182 bits (463), Expect = 5e-50
 Identities = 91/178 (51%), Positives = 121/178 (67%)
 Frame = +2

Query: 2   SKAFAIVQFLTSKDANTIYNALNETPLQYFYPKTYLKVQYMYRDIVPKPRKSLFVLEDAA 181
           S++FAIVQF +   A+ + NA     L+      YLK +Y  RDIVP+PR ++F L+ A 
Sbjct: 48  SRSFAIVQFQSEAHASLVLNAAQRNALRS--GSHYLKARYAERDIVPRPRTTIFNLQGAK 105

Query: 182 LHLGCLISEVTLGVLWSCTDVEVHFGFHMKKISFFLAQGNQSYKLDLSYESIWDIQQRCP 361
           LH GCL+ E  L VLWS TDV V FGF MK+I F L   ++ YKL+LSYESIW+IQ   P
Sbjct: 106 LHFGCLLKERVLSVLWSGTDVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRP 165

Query: 362 SAQRSQFLVIQVEAAPRIYEMPLQDSNLIHEDPSLNYFKETQDDRWIRTTDFTPSCSI 535
              + +FL+IQV+AAP+IYE  ++ S  +++DP  NYF++  DD+W RTTDFTPS SI
Sbjct: 166 PGLQKKFLLIQVQAAPKIYEQNIRLSGSMYDDPLFNYFRDDTDDQWTRTTDFTPSASI 223


>gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare]
          Length = 1115

 Score =  181 bits (458), Expect = 2e-49
 Identities = 90/178 (50%), Positives = 121/178 (67%)
 Frame = +2

Query: 2   SKAFAIVQFLTSKDANTIYNALNETPLQYFYPKTYLKVQYMYRDIVPKPRKSLFVLEDAA 181
           S++FAIVQF +   A+ + NA     L+      YLK +Y  RDIVP+PR ++F L+ A 
Sbjct: 48  SRSFAIVQFQSEAHASLVLNAAQRNALRS--GSHYLKARYAERDIVPRPRTTIFNLQGAK 105

Query: 182 LHLGCLISEVTLGVLWSCTDVEVHFGFHMKKISFFLAQGNQSYKLDLSYESIWDIQQRCP 361
           LH GCL+ E  L VLWS T+V V FGF MK+I F L   ++ YKL+LSYESIW+IQ   P
Sbjct: 106 LHFGCLLKERVLSVLWSGTNVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRP 165

Query: 362 SAQRSQFLVIQVEAAPRIYEMPLQDSNLIHEDPSLNYFKETQDDRWIRTTDFTPSCSI 535
              + +FL+IQV+AAP+IYE  ++ S  +++DP  NYF++  DD+W RTTDFTPS SI
Sbjct: 166 PGLQKKFLLIQVQAAPKIYEQNIRLSGSMYDDPLFNYFRDDTDDQWTRTTDFTPSASI 223


>gb|EAY87440.1| hypothetical protein OsI_08849 [Oryza sativa Indica Group]
          Length = 1067

 Score =  179 bits (454), Expect = 8e-49
 Identities = 94/180 (52%), Positives = 123/180 (68%), Gaps = 2/180 (1%)
 Frame = +2

Query: 2   SKAFAIVQFLTSKDANTIYNALNETPLQYFYPKTYLKVQYMYRDIVPKPRKSLFVLEDAA 181
           S+A+AIVQF T + A+ + NA     L+  +   YLKV    RDIVP+PR S+F LED  
Sbjct: 48  SRAYAIVQFQTEEHASLVKNAAQRKILRRGH--YYLKVHPSDRDIVPRPRVSMFKLEDVT 105

Query: 182 LHLGCLISEVTLGVLWSCTDVEVHFGFHMKKISFFLAQGNQS--YKLDLSYESIWDIQQR 355
           LH GCL+ E  L  LWS T V V FGF++KKI F+L   N S  YKL+LSYESIW+IQ +
Sbjct: 106 LHFGCLLKETILSALWSRTGVSVEFGFNLKKIYFYLQLPNSSIEYKLELSYESIWEIQLQ 165

Query: 356 CPSAQRSQFLVIQVEAAPRIYEMPLQDSNLIHEDPSLNYFKETQDDRWIRTTDFTPSCSI 535
            P   +++FL+IQV+AAP+IYE   + S +++EDP  NYF++  DD+W RTTDFT S SI
Sbjct: 166 RPPKSQTKFLLIQVQAAPKIYEQTPRRSGVMYEDPLFNYFRDHTDDQWTRTTDFTSSSSI 225


>gb|OVA04183.1| RNA-dependent RNA polymerase [Macleaya cordata]
          Length = 758

 Score =  177 bits (450), Expect = 1e-48
 Identities = 88/177 (49%), Positives = 117/177 (66%)
 Frame = +2

Query: 5   KAFAIVQFLTSKDANTIYNALNETPLQYFYPKTYLKVQYMYRDIVPKPRKSLFVLEDAAL 184
           + FA VQF++++ A  + + +N   L Y Y  +YLKVQ   RDI+PKPR S+F L+  AL
Sbjct: 49  RVFADVQFISNQKAELMSSLINRPKLLY-YGNSYLKVQNKERDIIPKPRVSMFHLKVPAL 107

Query: 185 HLGCLISEVTLGVLWSCTDVEVHFGFHMKKISFFLAQGNQSYKLDLSYESIWDIQQRCPS 364
           H GC +S+ +   +W   DV V FGF ++K+ F L+     YKL+LSYESIWDIQ R P 
Sbjct: 108 HFGCQVSDESFFNVWKARDVSVDFGFGLRKLYFLLSYSGVEYKLELSYESIWDIQLRSPE 167

Query: 365 AQRSQFLVIQVEAAPRIYEMPLQDSNLIHEDPSLNYFKETQDDRWIRTTDFTPSCSI 535
              + FL+IQ+ AAPRIYE PL  S  +  DP+L YF +T DD+W+RTTDFTPS  I
Sbjct: 168 NPNTPFLLIQMLAAPRIYEKPLSSSGKVFRDPTLQYFMDTLDDQWVRTTDFTPSSCI 224


>gb|ACH53360.1| RNA-directed RNA polymerase 1a, partial [Hordeum vulgare]
          Length = 1114

 Score =  177 bits (449), Expect = 4e-48
 Identities = 94/178 (52%), Positives = 116/178 (65%)
 Frame = +2

Query: 2   SKAFAIVQFLTSKDANTIYNALNETPLQYFYPKTYLKVQYMYRDIVPKPRKSLFVLEDAA 181
           S++FAIVQF T   A+ + NA     L+      YLKV+   RDI+ KPR +LF LEDA 
Sbjct: 48  SRSFAIVQFETEAHASLVVNAARGNALRS--GSNYLKVRPAERDIILKPRTALFNLEDAT 105

Query: 182 LHLGCLISEVTLGVLWSCTDVEVHFGFHMKKISFFLAQGNQSYKLDLSYESIWDIQQRCP 361
           LH GCL+ E  L VLWS T V V FGF MKKI F L    + YKL+LSYESIW+IQ   P
Sbjct: 106 LHFGCLLRERVLSVLWSGTGVSVEFGFAMKKIDFCLTYNLKKYKLELSYESIWEIQLYHP 165

Query: 362 SAQRSQFLVIQVEAAPRIYEMPLQDSNLIHEDPSLNYFKETQDDRWIRTTDFTPSCSI 535
              + +FL+IQV AAP+IYE  L  S  +++DP  NYF++  DD+W RTTDFTP  SI
Sbjct: 166 PGSQKKFLLIQVMAAPKIYEQNLWHSGSMYDDPLFNYFRDDTDDQWTRTTDFTPLASI 223


>gb|AAR91037.1| RNA-directed RNA polymerase 2 [Hordeum vulgare subsp. vulgare]
          Length = 1115

 Score =  177 bits (449), Expect = 4e-48
 Identities = 94/178 (52%), Positives = 116/178 (65%)
 Frame = +2

Query: 2   SKAFAIVQFLTSKDANTIYNALNETPLQYFYPKTYLKVQYMYRDIVPKPRKSLFVLEDAA 181
           S++FAIVQF T   A+ + NA     L+      YLKV+   RDI+ KPR +LF LEDA 
Sbjct: 48  SRSFAIVQFETEAHASLVVNAARGNALRS--GSNYLKVRPAERDIILKPRTALFNLEDAT 105

Query: 182 LHLGCLISEVTLGVLWSCTDVEVHFGFHMKKISFFLAQGNQSYKLDLSYESIWDIQQRCP 361
           LH GCL+ E  L VLWS T V V FGF MKKI F L    + YKL+LSYESIW+IQ   P
Sbjct: 106 LHFGCLLRERVLSVLWSGTGVSVEFGFAMKKIDFCLTYNLKKYKLELSYESIWEIQLYHP 165

Query: 362 SAQRSQFLVIQVEAAPRIYEMPLQDSNLIHEDPSLNYFKETQDDRWIRTTDFTPSCSI 535
              + +FL+IQV AAP+IYE  L  S  +++DP  NYF++  DD+W RTTDFTP  SI
Sbjct: 166 PGSQKKFLLIQVMAAPKIYEQNLWHSGSMYDDPLFNYFRDDTDDQWTRTTDFTPLASI 223


>ref|XP_020584591.1| probable RNA-dependent RNA polymerase 1 isoform X2 [Phalaenopsis
           equestris]
          Length = 1140

 Score =  177 bits (448), Expect = 5e-48
 Identities = 89/178 (50%), Positives = 123/178 (69%)
 Frame = +2

Query: 2   SKAFAIVQFLTSKDANTIYNALNETPLQYFYPKTYLKVQYMYRDIVPKPRKSLFVLEDAA 181
           SKAFAIVQF++S  A  +     +  L   + K+YL  + + RDIVPKP  +  V+ED  
Sbjct: 58  SKAFAIVQFISSTGATKVKYMTRQQRL--CFEKSYLTSRDVERDIVPKPITASHVMEDVI 115

Query: 182 LHLGCLISEVTLGVLWSCTDVEVHFGFHMKKISFFLAQGNQSYKLDLSYESIWDIQQRCP 361
           +H GC ISE  L +LW+  D  + FGF+++KIS F +  +  YKL+LSYESIW+IQ    
Sbjct: 116 VHFGCQISEKKLYILWTARDARIEFGFNLRKISLFTSWEDCLYKLELSYESIWEIQLYHS 175

Query: 362 SAQRSQFLVIQVEAAPRIYEMPLQDSNLIHEDPSLNYFKETQDDRWIRTTDFTPSCSI 535
            AQR +FL IQV+AAP++Y MP Q+S  I+E+P+LNY+K + D++W+RTTDFTP CSI
Sbjct: 176 VAQRCRFLQIQVQAAPKLYMMPSQNSFAIYENPALNYYKHSTDEQWLRTTDFTPQCSI 233


>ref|XP_011625384.1| probable RNA-dependent RNA polymerase 1 isoform X1 [Amborella
           trichopoda]
          Length = 1140

 Score =  177 bits (448), Expect = 5e-48
 Identities = 87/178 (48%), Positives = 121/178 (67%)
 Frame = +2

Query: 2   SKAFAIVQFLTSKDANTIYNALNETPLQYFYPKTYLKVQYMYRDIVPKPRKSLFVLEDAA 181
           S+ FAIVQF TSK A  IY+ L   P   ++  +Y+ V+YM  DIVP PR +  VLE   
Sbjct: 49  SRVFAIVQFTTSKSAEVIYS-LAPQPKSLYFGNSYVIVRYMENDIVPNPRVTYHVLESIQ 107

Query: 182 LHLGCLISEVTLGVLWSCTDVEVHFGFHMKKISFFLAQGNQSYKLDLSYESIWDIQQRCP 361
           L+ G  ISE +  +LWS T+V+V FGF +KKI F+LA     YKLDL YE+IW IQ R P
Sbjct: 108 LYFGNQISEESFAILWSNTNVKVEFGFGLKKIFFYLAHTGVDYKLDLYYENIWQIQLRRP 167

Query: 362 SAQRSQFLVIQVEAAPRIYEMPLQDSNLIHEDPSLNYFKETQDDRWIRTTDFTPSCSI 535
             + +++LV+Q++ APRI++ PL  S+ I++ P  NY+K+  D++W+R+ DFTPSCSI
Sbjct: 168 GTEGTRYLVLQMQGAPRIFQKPLSFSSDIYDSPLFNYYKDFPDEQWVRSIDFTPSCSI 225


>gb|ERN11375.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
          Length = 1210

 Score =  177 bits (448), Expect = 5e-48
 Identities = 87/178 (48%), Positives = 121/178 (67%)
 Frame = +2

Query: 2   SKAFAIVQFLTSKDANTIYNALNETPLQYFYPKTYLKVQYMYRDIVPKPRKSLFVLEDAA 181
           S+ FAIVQF TSK A  IY+ L   P   ++  +Y+ V+YM  DIVP PR +  VLE   
Sbjct: 119 SRVFAIVQFTTSKSAEVIYS-LAPQPKSLYFGNSYVIVRYMENDIVPNPRVTYHVLESIQ 177

Query: 182 LHLGCLISEVTLGVLWSCTDVEVHFGFHMKKISFFLAQGNQSYKLDLSYESIWDIQQRCP 361
           L+ G  ISE +  +LWS T+V+V FGF +KKI F+LA     YKLDL YE+IW IQ R P
Sbjct: 178 LYFGNQISEESFAILWSNTNVKVEFGFGLKKIFFYLAHTGVDYKLDLYYENIWQIQLRRP 237

Query: 362 SAQRSQFLVIQVEAAPRIYEMPLQDSNLIHEDPSLNYFKETQDDRWIRTTDFTPSCSI 535
             + +++LV+Q++ APRI++ PL  S+ I++ P  NY+K+  D++W+R+ DFTPSCSI
Sbjct: 238 GTEGTRYLVLQMQGAPRIFQKPLSFSSDIYDSPLFNYYKDFPDEQWVRSIDFTPSCSI 295


>ref|XP_010917518.1| PREDICTED: probable RNA-dependent RNA polymerase 1 isoform X2
           [Elaeis guineensis]
 ref|XP_019704929.1| PREDICTED: probable RNA-dependent RNA polymerase 1 isoform X2
           [Elaeis guineensis]
          Length = 1075

 Score =  175 bits (444), Expect = 2e-47
 Identities = 83/146 (56%), Positives = 111/146 (76%)
 Frame = +2

Query: 98  KTYLKVQYMYRDIVPKPRKSLFVLEDAALHLGCLISEVTLGVLWSCTDVEVHFGFHMKKI 277
           K +L+V+ + RDIVPKPR SLF+LE+A LH G  +S+    VLWS  DV+V+FGF+++KI
Sbjct: 21  KAFLEVRDVERDIVPKPRTSLFILENATLHFGSPVSQNKFSVLWSAMDVKVNFGFNLRKI 80

Query: 278 SFFLAQGNQSYKLDLSYESIWDIQQRCPSAQRSQFLVIQVEAAPRIYEMPLQDSNLIHED 457
            FFL++G  SYK +L+YESIW+IQ    S Q  QFL+IQV AAP+IYE+  ++S L+ ED
Sbjct: 81  YFFLSRGGHSYKFELAYESIWEIQLHRSSTQHLQFLLIQVVAAPKIYELFPRNSGLLLED 140

Query: 458 PSLNYFKETQDDRWIRTTDFTPSCSI 535
           P  NYFK+  DD+W+RTTDF+P CSI
Sbjct: 141 PIYNYFKDPPDDQWVRTTDFSPLCSI 166