BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon24_contig00012582
         (467 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PKA58053.1| Retrovirus-related Pol polyprotein from transposo...   123   2e-32
gb|PKA57601.1| Retrovirus-related Pol polyprotein from transposo...   120   1e-30
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   114   3e-26
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar...   111   2e-25
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar...   111   2e-25
gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposo...   110   3e-25
gb|PHT55765.1| hypothetical protein CQW23_04251 [Capsicum baccatum]   108   1e-24
gb|PHT53674.1| hypothetical protein CQW23_08136 [Capsicum baccatum]   107   3e-24
gb|AAK29467.1| polyprotein-like [Solanum chilense]                    107   4e-24
gb|EOY09126.1| Uncharacterized protein TCM_024518 [Theobroma cacao]   103   4e-24
gb|KYP37021.1| Retrovirus-related Pol polyprotein from transposo...   104   1e-23
gb|KYP36635.1| Retrovirus-related Pol polyprotein from transposo...   104   1e-23
gb|KYP58145.1| Retrovirus-related Pol polyprotein from transposo...   102   2e-23
gb|EOY22705.1| Transducin/WD40 repeat-like superfamily protein [...   105   2e-23
ref|XP_008796700.1| PREDICTED: uncharacterized protein LOC103712...   105   2e-23
gb|KYP69992.1| Retrovirus-related Pol polyprotein from transposo...    99   4e-22
gb|ESR55658.1| hypothetical protein CICLE_v10023471mg, partial [...    96   5e-22
gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subc...   100   6e-22
gb|ABA98861.1| retrotransposon protein, putative, Ty1-copia subc...   100   8e-22
gb|PNX71218.1| putative retrotransposon Ty1-copia subclass prote...    97   1e-21

>gb|PKA58053.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 198

 Score =  123 bits (308), Expect = 2e-32
 Identities = 67/156 (42%), Positives = 101/156 (64%), Gaps = 2/156 (1%)
 Frame = +1

Query: 4   KFNFLLWKI*VPVLLVKEEVYNVLDGKKKPSKMDEDE*N-VDFRAKTMIILCLSDEVLYN 180
           K +F +W+  V  +LV+ ++Y+ L G++K  K+  +E   +  +A + I LCL+DEVLYN
Sbjct: 14  KKDFGIWQRRVKAILVQNDLYHALLGREKARKITNEECEELYLKASSTIQLCLADEVLYN 73

Query: 181 VMNEETTAGLSCKLDSLYMTKSLSNKLFMKKQLYGLRMK*GTPILQHLNTFNRIASDLLA 360
           + + ET+  L  KL+  YM+KSL+NKL+MK+QLY LRM     +L+H+N F++I S   +
Sbjct: 74  IFDVETSVDLWRKLEKFYMSKSLTNKLYMKRQLYSLRMSEEADLLEHMNIFSKIISQFHS 133

Query: 361 LEVKL-EEDKTXXXXXXXXXXXDHLATTIMYGKEIL 465
           ++VKL EEDKT           DHL TTI+Y K+ L
Sbjct: 134 IDVKLEEEDKTLLLLSLLPKSYDHLVTTILYDKDTL 169


>gb|PKA57601.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 249

 Score =  120 bits (300), Expect = 1e-30
 Identities = 65/156 (41%), Positives = 101/156 (64%), Gaps = 2/156 (1%)
 Frame = +1

Query: 4   KFNFLLWKI*VPVLLVKEEVYNVLDGKKKPSKM-DEDE*NVDFRAKTMIILCLSDEVLYN 180
           K +F +W++ V  +LV+ ++++ L  +K   KM DE+   +D +A + I LCL+DEVLYN
Sbjct: 69  KKDFGIWQLRVKAILVQNDLHHALLERKNARKMTDEEWKELDLKALSTIQLCLADEVLYN 128

Query: 181 VMNEETTAGLSCKLDSLYMTKSLSNKLFMKKQLYGLRMK*GTPILQHLNTFNRIASDLLA 360
           + + ET+  L  KL+  YM+KSL+NKL+MK+QLY LRM  G  +L+H+N F+++ S   +
Sbjct: 129 ISDVETSVDLWRKLEKFYMSKSLTNKLYMKRQLYNLRMSEGANLLEHMNVFSKMISQFHS 188

Query: 361 LEVKLEE-DKTXXXXXXXXXXXDHLATTIMYGKEIL 465
           +EVKL+E D             +HL  TI+YGK+ L
Sbjct: 189 IEVKLQEKDVILLFLSLLPKSYNHLIITILYGKDTL 224


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon
           TNT 1-94; Includes: RecName: Full=Protease; Includes:
           RecName: Full=Reverse transcriptase; Includes: RecName:
           Full=Endonuclease
 emb|CAA32025.1| unnamed protein product [Nicotiana tabacum]
          Length = 1328

 Score =  114 bits (284), Expect = 3e-26
 Identities = 70/158 (44%), Positives = 100/158 (63%), Gaps = 7/158 (4%)
 Frame = +1

Query: 4   KFN----FLLWKI*VPVLLVKEEVYNVLD-GKKKPSKMD-EDE*NVDFRAKTMIILCLSD 165
           KFN    F  W+  +  LL+++ ++ VLD   KKP  M  ED  ++D RA + I L LSD
Sbjct: 10  KFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIRLHLSD 69

Query: 166 EVLYNVMNEETTAGLSCKLDSLYMTKSLSNKLFMKKQLYGLRMK*GTPILQHLNTFNRIA 345
           +V+ N+++E+T  G+  +L+SLYM+K+L+NKL++KKQLY L M  GT  L HLN FN + 
Sbjct: 70  DVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNGLI 129

Query: 346 SDLLALEVKL-EEDKTXXXXXXXXXXXDHLATTIMYGK 456
           + L  L VK+ EEDK            D+LATTI++GK
Sbjct: 130 TQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGK 167


>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
          Length = 1841

 Score =  111 bits (278), Expect = 2e-25
 Identities = 63/157 (40%), Positives = 101/157 (64%), Gaps = 3/157 (1%)
 Frame = +1

Query: 4    KFNFLLWKI*VPVLLVKEEVYNVLDGKKK-PSKMDEDE*NVDF-RAKTMIILCLSDEVLY 177
            K +F LW+I +  +LV++ +   L GK K PS + E++ +    RA + I+LCL DEVL 
Sbjct: 538  KNSFSLWRIKMRAVLVQQGLLKALSGKDKLPSTLSEEQKDDMLERAHSAILLCLGDEVLR 597

Query: 178  NVMNEETTAGLSCKLDSLYMTKSLSNKLFMKKQLYGLRMK*GTPILQHLNTFNRIASDLL 357
             V +E+T +GL  +L+S YMTKSL+N+L++K++LY L+M+ GTP+ QHL+ FN I  DL 
Sbjct: 598  EVADEKTASGLWLRLESKYMTKSLTNRLYLKQRLYALKMEEGTPVSQHLDKFNSIIMDLN 657

Query: 358  ALEVKL-EEDKTXXXXXXXXXXXDHLATTIMYGKEIL 465
             ++ K+ +ED+            ++   T+MYG++ L
Sbjct: 658  NIDNKIDDEDQAIIVLCSLPPSYENFVDTMMYGRDDL 694


>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
          Length = 2351

 Score =  111 bits (278), Expect = 2e-25
 Identities = 63/157 (40%), Positives = 101/157 (64%), Gaps = 3/157 (1%)
 Frame = +1

Query: 4   KFNFLLWKI*VPVLLVKEEVYNVLDGKKK-PSKMDEDE*NVDF-RAKTMIILCLSDEVLY 177
           K +F LW+I +  +LV++ +   L GK K PS + E++ +    RA + I+LCL DEVL 
Sbjct: 517 KNSFSLWRIKMRAVLVQQGLLKALSGKDKLPSTLSEEQKDDMLERAHSAILLCLGDEVLR 576

Query: 178 NVMNEETTAGLSCKLDSLYMTKSLSNKLFMKKQLYGLRMK*GTPILQHLNTFNRIASDLL 357
            V +E+T +GL  +L+S YMTKSL+N+L++K++LY L+M+ GTP+ QHL+ FN I  DL 
Sbjct: 577 EVADEKTASGLWLRLESKYMTKSLTNRLYLKQRLYALKMEEGTPVSQHLDKFNSIIMDLN 636

Query: 358 ALEVKL-EEDKTXXXXXXXXXXXDHLATTIMYGKEIL 465
            ++ K+ +ED+            ++   T+MYG++ L
Sbjct: 637 NIDNKIDDEDQAIIVLCSLPPSYENFVDTMMYGRDDL 673


>gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 690

 Score =  110 bits (276), Expect = 3e-25
 Identities = 68/152 (44%), Positives = 89/152 (58%), Gaps = 3/152 (1%)
 Frame = +1

Query: 4   KFNFLLWKI*VPVLLVKEEVYNVLDGK-KKPSKM-DEDE*NVDFRAKTMIILCLSDEVLY 177
           K  F +WK+ +  +L +  +   LDGK KKP  M DE    +D +A + I LCLS EVL 
Sbjct: 15  KICFSIWKVQMKAVLTQNGLKKALDGKAKKPVNMTDEQWDELDEKALSAIQLCLSKEVLR 74

Query: 178 NVMNEETTAGLSCKLDSLYMTKSLSNKLFMKKQLYGLRMK*GTPILQHLNTFNRIASDLL 357
            V NE T A L  KL+SLYMTKSL+NKL +K++LY +RM  GTPI  HLN FN I  DL 
Sbjct: 75  EVANETTAAALWLKLESLYMTKSLANKLRLKERLYTIRMVEGTPIQSHLNEFNSIIMDLE 134

Query: 358 ALEVKL-EEDKTXXXXXXXXXXXDHLATTIMY 450
            +E+K+ +EDK             H    ++Y
Sbjct: 135 NIEIKIDDEDKAVLLIVSLPSTYKHFKEIMLY 166


>gb|PHT55765.1| hypothetical protein CQW23_04251 [Capsicum baccatum]
          Length = 553

 Score =  108 bits (271), Expect = 1e-24
 Identities = 64/156 (41%), Positives = 95/156 (60%), Gaps = 3/156 (1%)
 Frame = +1

Query: 4   KFNFLLWKI*VPVLLVKEEVYNVLDGKK-KPSKMDEDE*N-VDFRAKTMIILCLSDEVLY 177
           K +F +W++ +  +L +  +  VL GK  KP+   E++   +D +A ++I LCLS EVL 
Sbjct: 13  KISFAIWRVQMLAVLTQNGLKKVLSGKSAKPATTTEEQWEEMDEKALSIIQLCLSREVLR 72

Query: 178 NVMNEETTAGLSCKLDSLYMTKSLSNKLFMKKQLYGLRMK*GTPILQHLNTFNRIASDLL 357
            V+NE+T AG+  KL+SLYMTKSL+NKL +K++L+ LRM  GTPI  HL  FN I  DL 
Sbjct: 73  EVINEKTAAGIWSKLESLYMTKSLANKLRLKERLFTLRMSEGTPIQSHLGEFNSIIIDLE 132

Query: 358 ALEVKL-EEDKTXXXXXXXXXXXDHLATTIMYGKEI 462
            L+V++ +EDK             H    ++YG  +
Sbjct: 133 NLDVEIDDEDKAVLLIVSLPPSYRHFKKIMLYGNNV 168


>gb|PHT53674.1| hypothetical protein CQW23_08136 [Capsicum baccatum]
          Length = 707

 Score =  107 bits (268), Expect = 3e-24
 Identities = 64/156 (41%), Positives = 93/156 (59%), Gaps = 3/156 (1%)
 Frame = +1

Query: 4   KFNFLLWKI*VPVLLVKEEVYNVLDGKK-KPSKMDEDE*N-VDFRAKTMIILCLSDEVLY 177
           K +F +W++ +  +L +  +  VL GK  KP+   E++    D +A + I LCLS EVL 
Sbjct: 13  KISFAIWRVQMLAVLTQNGLKKVLSGKSAKPATTTEEQWEETDEKALSTIQLCLSREVLR 72

Query: 178 NVMNEETTAGLSCKLDSLYMTKSLSNKLFMKKQLYGLRMK*GTPILQHLNTFNRIASDLL 357
            V+NE+T AG+  KL+SLYMTKSL+NKL +K++L+ LRM  GTPI  HL  FN I  DL 
Sbjct: 73  EVINEKTAAGIWSKLESLYMTKSLANKLRLKERLFTLRMSEGTPIQSHLGEFNSIIIDLE 132

Query: 358 ALEVKL-EEDKTXXXXXXXXXXXDHLATTIMYGKEI 462
            L+V++ +EDK             H    ++YG  +
Sbjct: 133 NLDVEIDDEDKAVLLIVSLPPSYRHFKEIMLYGNNV 168


>gb|AAK29467.1| polyprotein-like [Solanum chilense]
          Length = 1328

 Score =  107 bits (268), Expect = 4e-24
 Identities = 66/160 (41%), Positives = 99/160 (61%), Gaps = 8/160 (5%)
 Frame = +1

Query: 4   KFN-----FLLWKI*VPVLLVKEEVYNVLDGK-KKPSKMD-EDE*NVDFRAKTMIILCLS 162
           KFN     F +W+  +  LL+++ ++  L GK KKP  M  ED   +D +A + I L L+
Sbjct: 10  KFNGDKPVFSMWQRRMKDLLIQQGLHKALGGKSKKPESMKLEDWEELDEKAASAIRLHLT 69

Query: 163 DEVLYNVMNEETTAGLSCKLDSLYMTKSLSNKLFMKKQLYGLRMK*GTPILQHLNTFNRI 342
           D+V+ N+++EE+  G+  KL++LYM+K+L+NKL++KKQLY L M  GT  L HLN  N +
Sbjct: 70  DDVVNNIVDEESACGIWTKLENLYMSKTLTNKLYLKKQLYTLHMDEGTNFLSHLNVLNGL 129

Query: 343 ASDLLALEVKL-EEDKTXXXXXXXXXXXDHLATTIMYGKE 459
            + L  L VK+ EEDK            D L+TTI++GK+
Sbjct: 130 ITQLANLGVKIEEEDKRIVLLNSLPSSYDTLSTTILHGKD 169


>gb|EOY09126.1| Uncharacterized protein TCM_024518 [Theobroma cacao]
          Length = 277

 Score =  103 bits (258), Expect = 4e-24
 Identities = 61/162 (37%), Positives = 102/162 (62%), Gaps = 7/162 (4%)
 Frame = +1

Query: 1   KKFN----FLLWKI*VPVLLVKEEVYNVLDGKKK-PSKM-DEDE*NVDFRAKTMIILCLS 162
           +KFN    F LW++ +  LLV++ +   L GK+  PS + D ++ ++  +A + I+L LS
Sbjct: 11  EKFNGRNDFSLWRVKMCALLVQQGLLKALKGKEHLPSNLSDSEKDDLMEKAHSAILLTLS 70

Query: 163 DEVLYNVMNEETTAGLSCKLDSLYMTKSLSNKLFMKKQLYGLRMK*GTPILQHLNTFNRI 342
           DEVL  V +EE+ A +  KL+S+Y+TKSL+N+L+MK++LY L+M  GT +  H++ FNR+
Sbjct: 71  DEVLREVTDEESAAAMWFKLESIYITKSLTNRLYMKQRLYTLKMSEGTSVNTHIDEFNRV 130

Query: 343 ASDLLALEVKLE-EDKTXXXXXXXXXXXDHLATTIMYGKEIL 465
             DL  ++VK+E ED             ++   T++YG++ L
Sbjct: 131 ILDLKNIDVKIEDEDLALILLCYLPPSYENFVDTMLYGRDTL 172


>gb|KYP37021.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 352

 Score =  104 bits (259), Expect = 1e-23
 Identities = 64/168 (38%), Positives = 95/168 (56%), Gaps = 14/168 (8%)
 Frame = +1

Query: 4   KFNFLLWKI*VPVLL-------------VKEEVYNVLDGKKKPSKMDEDE*NVDFRAKTM 144
           K +F LW+I +  LL             VK+EV +    K   SK++E     + +A ++
Sbjct: 15  KNSFNLWRIKMRALLKEQRVWAPLATTSVKQEVLSEPKEKASASKIEELA-EQEEKAHSL 73

Query: 145 IILCLSDEVLYNVMNEETTAGLSCKLDSLYMTKSLSNKLFMKKQLYGLRMK*GTPILQHL 324
           I+L LSDEVLY V +EET +GL CKL+ LYMTKS+ NKL +K++L+GL MK GTP+  HL
Sbjct: 74  ILLSLSDEVLYEVADEETASGLWCKLEKLYMTKSICNKLLLKRRLFGLHMKEGTPLKDHL 133

Query: 325 NTFNRIASDLLALEVKLE-EDKTXXXXXXXXXXXDHLATTIMYGKEIL 465
           +  N +  +L  ++VK+E ED             +    ++  GKE +
Sbjct: 134 DELNSVLMELRDIDVKIEDEDAAMILLAYLPPSYESFVNSLSVGKECI 181


>gb|KYP36635.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 364

 Score =  104 bits (259), Expect = 1e-23
 Identities = 64/168 (38%), Positives = 95/168 (56%), Gaps = 14/168 (8%)
 Frame = +1

Query: 4   KFNFLLWKI*VPVLL-------------VKEEVYNVLDGKKKPSKMDEDE*NVDFRAKTM 144
           K +F LW+I +  LL             VK+EV +    K   SK++E     + +A ++
Sbjct: 15  KNSFNLWRIKMRALLKEQRVWAPLATTSVKQEVLSEPKEKASASKIEELA-EQEEKAHSL 73

Query: 145 IILCLSDEVLYNVMNEETTAGLSCKLDSLYMTKSLSNKLFMKKQLYGLRMK*GTPILQHL 324
           I+L LSDEVLY V +EET +GL CKL+ LYMTKS+ NKL +K++L+GL MK GTP+  HL
Sbjct: 74  ILLSLSDEVLYEVADEETASGLWCKLEKLYMTKSICNKLLLKRRLFGLHMKEGTPLKDHL 133

Query: 325 NTFNRIASDLLALEVKLE-EDKTXXXXXXXXXXXDHLATTIMYGKEIL 465
           +  N +  +L  ++VK+E ED             +    ++  GKE +
Sbjct: 134 DELNSVLMELRDIDVKIEDEDAAMILLASLPPSYESFVNSLSVGKECI 181


>gb|KYP58145.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 262

 Score =  102 bits (253), Expect = 2e-23
 Identities = 64/139 (46%), Positives = 82/139 (58%), Gaps = 3/139 (2%)
 Frame = +1

Query: 43  LLVKEEVYNVLDGK-KKPSKM-DEDE*NVDFRAKTMIILCLSDEVLYNVMNEETTAGLSC 216
           +L +  +   LDGK KKP  M DE    +D +A + I LCLS EVL  V NE T A L  
Sbjct: 4   VLTQNGLKKALDGKAKKPVNMTDEQWDELDEKALSAIQLCLSKEVLREVANETTAAALWL 63

Query: 217 KLDSLYMTKSLSNKLFMKKQLYGLRMK*GTPILQHLNTFNRIASDLLALEVKL-EEDKTX 393
           KL+SLYMTKSL+NKL +K++LY +RM  GTPI  HLN FN I  DL  +E+K+ +EDK  
Sbjct: 64  KLESLYMTKSLANKLRLKERLYTIRMVEGTPIQSHLNEFNSIIMDLENIEIKIDDEDKAV 123

Query: 394 XXXXXXXXXXDHLATTIMY 450
                      H    ++Y
Sbjct: 124 LLIVSLPSTYKHFKEIMLY 142


>gb|EOY22705.1| Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
          Length = 1029

 Score =  105 bits (263), Expect = 2e-23
 Identities = 62/162 (38%), Positives = 103/162 (63%), Gaps = 7/162 (4%)
 Frame = +1

Query: 1   KKFN----FLLWKI*VPVLLVKEEVYNVLDGKKK-PSKM-DEDE*NVDFRAKTMIILCLS 162
           +KFN    F LW++ +  LLV++ +   L GK+  PS + D ++ ++  +A ++I+L LS
Sbjct: 133 EKFNGRNDFSLWRVKMRALLVQQGLLKALKGKEHLPSNLSDGEKDDLMKKAHSVILLALS 192

Query: 163 DEVLYNVMNEETTAGLSCKLDSLYMTKSLSNKLFMKKQLYGLRMK*GTPILQHLNTFNRI 342
           DEVL  V +EE+ A +  KL+S+YMTKSL+N+L+MK++LY L+M  GT +  H++ FNR+
Sbjct: 193 DEVLREVTDEESAAAVWFKLESIYMTKSLTNRLYMKQRLYTLKMSEGTSVNTHIDEFNRV 252

Query: 343 ASDLLALEVKLE-EDKTXXXXXXXXXXXDHLATTIMYGKEIL 465
             DL  ++VK+E ED             ++   T++YG++ L
Sbjct: 253 ILDLKNIDVKIEDEDLALILLCYLPPSYENFVDTMLYGRDTL 294


>ref|XP_008796700.1| PREDICTED: uncharacterized protein LOC103712082 [Phoenix
           dactylifera]
          Length = 2199

 Score =  105 bits (263), Expect = 2e-23
 Identities = 62/156 (39%), Positives = 98/156 (62%), Gaps = 2/156 (1%)
 Frame = +1

Query: 4   KFNFLLWKI*VPVLLVKEEVYNVLDGKKKPSKMD-EDE*NVDFRAKTMIILCLSDEVLYN 180
           K NF+LW+  V  LL+++ +Y VL  KK+P K+  ED   ++  A + I +CL+D+VL  
Sbjct: 397 KGNFILWQQRVKDLLIQQRIYKVLV-KKRPKKISIEDWEELEEIAFSTIRMCLADQVLPE 455

Query: 181 VMNEETTAGLSCKLDSLYMTKSLSNKLFMKKQLYGLRMK*GTPILQHLNTFNRIASDLLA 360
           +  E T   L  +L++ YM KS++NKL++KKQLY LRM  G  ++ H+  FN++ S++++
Sbjct: 456 ICLETTAKELWERLENTYMGKSMTNKLWLKKQLYSLRMPEGGDLISHIQKFNQVCSEIMS 515

Query: 361 LEVKL-EEDKTXXXXXXXXXXXDHLATTIMYGKEIL 465
           L+V++ EED T           D L TT++Y KE L
Sbjct: 516 LDVQIVEEDMTLLLLYSLPGSYDGLITTLVYRKETL 551


>gb|KYP69992.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 307

 Score = 99.4 bits (246), Expect = 4e-22
 Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 13/167 (7%)
 Frame = +1

Query: 4   KFNFLLWKI*VPVLLVKEEVYNVL--DGKKKPSKMD----------EDE*NVDFRAKTMI 147
           K +F LW+I +  LL ++ V+  L     KK SK +          ED    + +A ++I
Sbjct: 13  KNSFNLWRIKMHALLKEQRVWGPLATTSVKKESKTELSNKSTSIKKEDLAEQEEKAHSLI 72

Query: 148 ILCLSDEVLYNVMNEETTAGLSCKLDSLYMTKSLSNKLFMKKQLYGLRMK*GTPILQHLN 327
           +L LS+EVLY V ++ET  GL  KL+ LYMTKS+ NKL +K++L+GL MK  TP+ +HL+
Sbjct: 73  LLSLSNEVLYEVADQETACGLWLKLEKLYMTKSICNKLLLKRRLFGLHMKESTPLKEHLD 132

Query: 328 TFNRIASDLLALEVKLE-EDKTXXXXXXXXXXXDHLATTIMYGKEIL 465
            FN I  +L  ++VK+E ED             +    ++  GK+ +
Sbjct: 133 EFNSILMELRDIDVKIEDEDSAMILLASLPPSYESFVNSLSVGKDFI 179


>gb|ESR55658.1| hypothetical protein CICLE_v10023471mg, partial [Citrus clementina]
          Length = 185

 Score = 96.3 bits (238), Expect = 5e-22
 Identities = 58/130 (44%), Positives = 76/130 (58%), Gaps = 1/130 (0%)
 Frame = +1

Query: 79  GKKKPSKMDEDE*NVDFRAKTMIILCLSDEVLYNVMNEETTAGLSCKLDSLYMTKSLSNK 258
           G  K S  DED   +D RA + I LCL+  VL NV N  T   L  KL+ LY TKS+SN+
Sbjct: 22  GSGKASISDEDWEELDDRAASAIRLCLAKNVLANVGNIPTAKELWEKLEKLYQTKSISNR 81

Query: 259 LFMKKQLYGLRMK*GTPILQHLNTFNRIASDLLALEVKLE-EDKTXXXXXXXXXXXDHLA 435
           L++K+Q + LRM  GT I  HL+  N I S+L A+ VK+E +DK             H+ 
Sbjct: 82  LYLKEQFHTLRMAEGTKISDHLSVLNGIVSELEAIGVKIEDDDKALRLLWSLPTSYKHML 141

Query: 436 TTIMYGKEIL 465
            T+MYGKEI+
Sbjct: 142 PTLMYGKEIV 151


>gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 424

 Score =  100 bits (249), Expect = 6e-22
 Identities = 57/154 (37%), Positives = 97/154 (62%), Gaps = 2/154 (1%)
 Frame = +1

Query: 10  NFLLWKI*VPVLLVKEEVYNVLDGKKKPSKMDEDE*N-VDFRAKTMIILCLSDEVLYNVM 186
           NF+LW++ +  LL ++ +   L+ +  P KMD  +   +  +A   I L LSD V+Y VM
Sbjct: 19  NFVLWQMRLKDLLAQQGISKALE-ETMPEKMDAGKWEEMKAQAAATIRLSLSDSVMYQVM 77

Query: 187 NEETTAGLSCKLDSLYMTKSLSNKLFMKKQLYGLRMK*GTPILQHLNTFNRIASDLLALE 366
           +E+T+  +  KL SLYM+KSL++KL++K+QLYGL+M+  + + +H++ FN++  DL  L+
Sbjct: 78  DEKTSKEIWVKLTSLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDVFNQLVVDLSKLD 137

Query: 367 VKL-EEDKTXXXXXXXXXXXDHLATTIMYGKEIL 465
           VKL +EDK            +H+ T + +GK+ +
Sbjct: 138 VKLDDEDKAIILLCSLPPSYEHVVTILTHGKDTI 171


>gb|ABA98861.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 425

 Score =  100 bits (248), Expect = 8e-22
 Identities = 58/152 (38%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
 Frame = +1

Query: 10  NFLLWKI*VPVLLVKEEVYNVLDGKKKPSKMDEDE*N-VDFRAKTMIILCLSDEVLYNVM 186
           NF+LW++ +  LL ++ +   L+ +  P KMD  +   +  +A   I L LSD V+Y VM
Sbjct: 19  NFILWQMRLKDLLAQQGISKALE-ETMPEKMDAGKWEEMKAQAAATIRLSLSDSVMYPVM 77

Query: 187 NEETTAGLSCKLDSLYMTKSLSNKLFMKKQLYGLRMK*GTPILQHLNTFNRIASDLLALE 366
           +E+T   +  KL SLYM+KSL++KL++K+QLYGL+M+  + + +H++ FN++  DL  L+
Sbjct: 78  DEKTPKEIWDKLASLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDVFNQLVVDLSKLD 137

Query: 367 VKL-EEDKTXXXXXXXXXXXDHLATTIMYGKE 459
           VKL +ED             +H+ TT+M+GK+
Sbjct: 138 VKLDDEDMAIILLCSLPPSYEHVVTTLMHGKD 169


>gb|PNX71218.1| putative retrotransposon Ty1-copia subclass protein [Trifolium
           pratense]
 gb|PNY02521.1| putative retrotransposon Ty1-copia subclass protein [Trifolium
           pratense]
          Length = 257

 Score = 97.1 bits (240), Expect = 1e-21
 Identities = 53/153 (34%), Positives = 89/153 (58%), Gaps = 1/153 (0%)
 Frame = +1

Query: 10  NFLLWKI*VPVLLVKEEVYNVLDGKKKPSKMDEDE*NVDFRAKTMIILCLSDEVLYNVMN 189
           NF LW+  V  LL ++ +   L   K     D+D   +  +A  +I LC+SDEV+Y++++
Sbjct: 19  NFRLWERRVKDLLAQQGLQKALRETKPTDMADDDWLELQEKAAGLIRLCVSDEVMYHILD 78

Query: 190 EETTAGLSCKLDSLYMTKSLSNKLFMKKQLYGLRMK*GTPILQHLNTFNRIASDLLALEV 369
             +   +  KL+S Y++K+  N+LF K +LY L+M+ G+ + QH+NTFN I ++L+ L V
Sbjct: 79  LTSPKEVLDKLESQYISKTRMNRLFTKMRLYSLKMREGSDLQQHVNTFNNIITELVKLGV 138

Query: 370 KL-EEDKTXXXXXXXXXXXDHLATTIMYGKEIL 465
           K+ +ED              HL  T++YGK+ +
Sbjct: 139 KIDDEDSAIMLLCSLPSSYKHLVNTLIYGKDTI 171