BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon23_contig00041431
         (912 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AVA17450.1| RNA-dependent RNA polymerase [Gigaspora margarita...    91   1e-16

>gb|AVA17450.1| RNA-dependent RNA polymerase [Gigaspora margarita mitovirus 2]
          Length = 986

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 71/253 (28%), Positives = 115/253 (45%), Gaps = 3/253 (1%)
 Frame = -2

Query: 836 WQVLLDWNLQRQRNMVVIDPNDPEGLMYLTDPEYRELQKVCLSMGTPLTVVARRGSQPPA 657
           W V  DW   +     ++DP +P  L+YL + ++R+  KV LS   P+ V+AR G   P 
Sbjct: 41  WSV--DWFKVKAGFYCIVDPTNPRELIYLGEKDFRDFIKVMLSNREPMVVLARAGENQPK 98

Query: 656 IVTAAFASFKKIPPIFPTVTSENHKHVPRPTMFRNGLWSVFIKARSWIPA--NIKVDSDT 483
              +   + K   P   TV   + +   +   F   LWS   + +  +P   N+K     
Sbjct: 99  --DSEILTPKPKSP-HSTVFFRSFRVYSK---FLRALWSEMWEGKLVVPLERNLKF---- 148

Query: 482 GAIGLSTHSGAQMVWKTTMMWGRQAFHYSGLTRQSLCFNS-IEHLGRHLVKLLEHQGPNT 306
                               WG+   H+ G +  S   +  +  + ++L+ +L+H+G   
Sbjct: 149 ----------------IICNWGKTLLHWLGTSSSSRAQSQGLIQVSKYLMVVLKHRGATG 192

Query: 305 LIQRLKIYLFVMNAYIGGERMKTTEALGTRIRLKNGLPVCFPQRIKDAIRSGSLPVIRWW 126
           L   LK+    +N Y+ GE +K+T  L   +RL+ GLP   P  ++ AIR  S  VIR W
Sbjct: 193 LTIFLKVSFIALNKYLAGEPLKSTFPLKCGMRLQGGLPSWLPAPVRLAIRQKSYKVIRLW 252

Query: 125 ASLLNMYKALGAE 87
           +SLL  YK + A+
Sbjct: 253 SSLLYTYKGMYAK 265