BLASTX nr result
ID: Ophiopogon23_contig00041428
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon23_contig00041428
(538 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_588275.1| hypothetical protein ZeamMp009 (mitochondrion) ... 55 3e-10
ref|YP_008802509.1| ribosomal protein S4 (mitochondrion) [Asclep... 66 1e-09
ref|NP_064047.1| orf169 gene product (mitochondrion) [Beta vulga... 61 1e-09
emb|CBJ23345.1| hypothetical protein (mitochondrion) [Beta vulga... 61 1e-09
ref|YP_009173840.1| ribosomal protein S4 (mitochondrion) [Populu... 66 1e-09
ref|YP_002000578.1| ribosomal protein S4 (mitochondrion) [Oryza ... 66 2e-09
ref|YP_005090486.1| ribosomal protein S4 (mitochondrion) [Lotus ... 66 2e-09
ref|YP_005090450.1| ribosomal protein S4 (mitochondrion) [Millet... 66 2e-09
dbj|BAD83538.2| ribosomal protein S4, partial (mitochondrion) [N... 64 1e-08
ref|YP_717175.1| ribosomal protein S4 [Brassica napus] >gi|37591... 63 2e-08
sp|Q31708.2|RT04_ARATH RecName: Full=Ribosomal protein S4, mitoc... 63 2e-08
gb|ACH78250.1| ribosomal protein S4 (mitochondrion) [Arabidopsis... 63 2e-08
ref|YP_009430359.1| orf96 (mitochondrion) [Bupleurum falcatum] >... 54 3e-08
gb|AUD56971.1| ribosomal protein subunit S4 (mitochondrion) [Hym... 61 9e-08
gb|AUD56964.1| ribosomal protein subunit S4 (mitochondrion) [Cub... 61 9e-08
gb|AUD56965.1| ribosomal protein subunit S4 (mitochondrion) [Dep... 61 9e-08
gb|AUD56984.1| ribosomal protein subunit S4 (mitochondrion) [Ron... 61 9e-08
gb|AUD56961.1| ribosomal protein subunit S4 (mitochondrion) [Cep... 61 9e-08
ref|XP_010096993.1| uncharacterized protein LOC21407636 [Morus n... 61 1e-07
ref|YP_009243660.1| ribosomal protein S4 (mitochondrion) [Cannab... 61 1e-07
>ref|YP_588275.1| hypothetical protein ZeamMp009 (mitochondrion) [Zea mays subsp.
mays]
gb|AAR91139.1| hypothetical protein (mitochondrion) [Zea mays]
Length = 115
Score = 55.1 bits (131), Expect(2) = 3e-10
Identities = 26/32 (81%), Positives = 26/32 (81%)
Frame = -2
Query: 513 WAMFPERDCLLSGQQSTRSRRLLYDGLTSFPG 418
WAMFPERDCLLSGQQS RLLYD LTSF G
Sbjct: 64 WAMFPERDCLLSGQQSYTYSRLLYDDLTSFLG 95
Score = 37.4 bits (85), Expect(2) = 3e-10
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = -3
Query: 425 FLGSARSSTLRPLQSK*KKR 366
FLGSARSSTLRP+QSK KKR
Sbjct: 93 FLGSARSSTLRPIQSKSKKR 112
>ref|YP_008802509.1| ribosomal protein S4 (mitochondrion) [Asclepias syriaca]
gb|AGZ63043.1| ribosomal protein S4 (mitochondrion) (mitochondrion) [Asclepias
syriaca]
Length = 274
Score = 66.2 bits (160), Expect = 1e-09
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = +1
Query: 1 GPNIGHIPHDIRLKDLNLLLWSGNGYGQNI 90
GPNIGHIPHDIRLKDLNLLLWSGNG GQNI
Sbjct: 245 GPNIGHIPHDIRLKDLNLLLWSGNGRGQNI 274
>ref|NP_064047.1| orf169 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
ref|YP_004222289.1| hypothetical protein BevumaM_p051 (mitochondrion) [Beta vulgaris
subsp. maritima]
ref|YP_004842203.1| hypothetical protein BemaM_p159 (mitochondrion) [Beta macrocarpa]
dbj|BAA99357.1| orf169 (mitochondrion) [Beta vulgaris subsp. vulgaris]
emb|CBJ14109.1| hypothetical protein (mitochondrion) [Beta vulgaris subsp.
maritima]
emb|CBJ17516.1| hypothetical protein (mitochondrion) [Beta vulgaris subsp.
maritima]
emb|CBX25008.1| hypothetical protein (mitochondrion) [Beta macrocarpa]
emb|CBL52034.1| hypothetical protein (mitochondrion) [Beta vulgaris subsp.
maritima]
Length = 169
Score = 60.8 bits (146), Expect(2) = 1e-09
Identities = 28/30 (93%), Positives = 28/30 (93%)
Frame = -3
Query: 530 KERREIGPCFPRETAFSQDSSRLEVEDCSM 441
KERREIGPCFPRE AFSQ SSRLEVEDCSM
Sbjct: 110 KERREIGPCFPREAAFSQASSRLEVEDCSM 139
Score = 29.6 bits (65), Expect(2) = 1e-09
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 426 FPGLCSLVYAPTTPVKMKK 370
FPGLCS VYAPT V ++K
Sbjct: 144 FPGLCSPVYAPTHKVIIEK 162
>emb|CBJ23345.1| hypothetical protein (mitochondrion) [Beta vulgaris subsp.
maritima]
Length = 169
Score = 60.8 bits (146), Expect(2) = 1e-09
Identities = 28/30 (93%), Positives = 28/30 (93%)
Frame = -3
Query: 530 KERREIGPCFPRETAFSQDSSRLEVEDCSM 441
KERREIGPCFPRE AFSQ SSRLEVEDCSM
Sbjct: 110 KERREIGPCFPREAAFSQASSRLEVEDCSM 139
Score = 29.6 bits (65), Expect(2) = 1e-09
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 426 FPGLCSLVYAPTTPVKMKK 370
FPGLCS VYAPT V ++K
Sbjct: 144 FPGLCSPVYAPTHKVIIEK 162
>ref|YP_009173840.1| ribosomal protein S4 (mitochondrion) [Populus tremula]
ref|YP_009178738.1| ribosomal protein S4 (mitochondrion) [Populus tremula x Populus
alba]
ref|YP_009230379.1| ribosomal protein S4 (mitochondrion) [Salix suchowensis]
ref|YP_009239012.1| ribosomal protein S4 (mitochondrion) [Salix purpurea]
ref|YP_009389182.1| ribosomal protein S4 (mitochondrion) [Populus davidiana]
gb|ALH07315.1| ribosomal protein S4 (mitochondrion) [Populus tremula]
gb|ALJ49771.1| ribosomal protein S4 (mitochondrion) [Populus tremula x Populus
alba]
gb|AMF83900.1| ribosomal protein S4 (mitochondrion) [Salix suchowensis]
gb|AMO27196.1| ribosomal protein S4 (mitochondrion) [Salix purpurea]
gb|ARX79189.1| ribosomal protein S4 (mitochondrion) [Populus davidiana]
Length = 322
Score = 66.2 bits (160), Expect = 1e-09
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = +1
Query: 1 GPNIGHIPHDIRLKDLNLLLWSGNGYGQNI 90
GPNIGHIPHDIRLKDLNLLLWSGNG GQNI
Sbjct: 293 GPNIGHIPHDIRLKDLNLLLWSGNGRGQNI 322
>ref|YP_002000578.1| ribosomal protein S4 (mitochondrion) [Oryza sativa Japonica Group]
dbj|BAC19883.2| Ribosomal protein S4 (mitochondrion) [Oryza sativa Japonica Group]
Length = 352
Score = 66.2 bits (160), Expect = 2e-09
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = +1
Query: 1 GPNIGHIPHDIRLKDLNLLLWSGNGYGQNI 90
GPNIGHIPHDIRLKDLNLLLWSGNG GQNI
Sbjct: 323 GPNIGHIPHDIRLKDLNLLLWSGNGRGQNI 352
>ref|YP_005090486.1| ribosomal protein S4 (mitochondrion) [Lotus japonicus]
gb|AET62946.1| ribosomal protein S4 (mitochondrion) [Lotus japonicus]
Length = 358
Score = 66.2 bits (160), Expect = 2e-09
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = +1
Query: 1 GPNIGHIPHDIRLKDLNLLLWSGNGYGQNI 90
GPNIGHIPHDIRLKDLNLLLWSGNG GQNI
Sbjct: 329 GPNIGHIPHDIRLKDLNLLLWSGNGRGQNI 358
>ref|YP_005090450.1| ribosomal protein S4 (mitochondrion) [Millettia pinnata]
ref|YP_005090457.1| ribosomal protein S4 (mitochondrion) [Millettia pinnata]
gb|AET62910.1| ribosomal protein S4 (mitochondrion) [Millettia pinnata]
gb|AET62917.1| ribosomal protein S4 (mitochondrion) [Millettia pinnata]
Length = 358
Score = 66.2 bits (160), Expect = 2e-09
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = +1
Query: 1 GPNIGHIPHDIRLKDLNLLLWSGNGYGQNI 90
GPNIGHIPHDIRLKDLNLLLWSGNG GQNI
Sbjct: 329 GPNIGHIPHDIRLKDLNLLLWSGNGRGQNI 358
>dbj|BAD83538.2| ribosomal protein S4, partial (mitochondrion) [Nicotiana tabacum]
Length = 349
Score = 63.9 bits (154), Expect = 1e-08
Identities = 28/30 (93%), Positives = 28/30 (93%)
Frame = +1
Query: 1 GPNIGHIPHDIRLKDLNLLLWSGNGYGQNI 90
GPNIGHIPHDIRLKDLNLLLWSG G GQNI
Sbjct: 320 GPNIGHIPHDIRLKDLNLLLWSGKGRGQNI 349
>ref|YP_717175.1| ribosomal protein S4 [Brassica napus]
dbj|BAC98926.1| ribosomal protein S4 (mitochondrion) [Brassica napus]
Length = 362
Score = 63.2 bits (152), Expect = 2e-08
Identities = 28/30 (93%), Positives = 28/30 (93%)
Frame = +1
Query: 1 GPNIGHIPHDIRLKDLNLLLWSGNGYGQNI 90
GPNIGHIPHDIRLKDLNLLLWS NG GQNI
Sbjct: 333 GPNIGHIPHDIRLKDLNLLLWSRNGRGQNI 362
>sp|Q31708.2|RT04_ARATH RecName: Full=Ribosomal protein S4, mitochondrial
Length = 362
Score = 63.2 bits (152), Expect = 2e-08
Identities = 28/30 (93%), Positives = 28/30 (93%)
Frame = +1
Query: 1 GPNIGHIPHDIRLKDLNLLLWSGNGYGQNI 90
GPNIGHIPHDIRLKDLNLLLWS NG GQNI
Sbjct: 333 GPNIGHIPHDIRLKDLNLLLWSRNGRGQNI 362
>gb|ACH78250.1| ribosomal protein S4 (mitochondrion) [Arabidopsis thaliana]
Length = 362
Score = 63.2 bits (152), Expect = 2e-08
Identities = 28/30 (93%), Positives = 28/30 (93%)
Frame = +1
Query: 1 GPNIGHIPHDIRLKDLNLLLWSGNGYGQNI 90
GPNIGHIPHDIRLKDLNLLLWS NG GQNI
Sbjct: 333 GPNIGHIPHDIRLKDLNLLLWSRNGRGQNI 362
>ref|YP_009430359.1| orf96 (mitochondrion) [Bupleurum falcatum]
gb|ARR27491.1| orf96 (mitochondrion) [Bupleurum falcatum]
Length = 121
Score = 53.5 bits (127), Expect(2) = 3e-08
Identities = 26/35 (74%), Positives = 28/35 (80%)
Frame = -3
Query: 530 KERREIGPCFPRETAFSQDSSRLEVEDCSMTV*PL 426
KERREIGPCFPRE AFSQ SS L + DCSMT P+
Sbjct: 50 KERREIGPCFPREAAFSQASSLLLLVDCSMTGFPV 84
Score = 32.3 bits (72), Expect(2) = 3e-08
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -1
Query: 424 SWALLARLRSDHSSQNEKN 368
SWALLARLRSD +SQN K+
Sbjct: 85 SWALLARLRSDPASQNLKS 103
>gb|AUD56971.1| ribosomal protein subunit S4 (mitochondrion) [Hymenodictyon
parvifolium]
Length = 274
Score = 60.8 bits (146), Expect = 9e-08
Identities = 28/30 (93%), Positives = 28/30 (93%)
Frame = +1
Query: 1 GPNIGHIPHDIRLKDLNLLLWSGNGYGQNI 90
GPNIGHIPHDIRLKDLNLLL SGNG GQNI
Sbjct: 245 GPNIGHIPHDIRLKDLNLLLRSGNGRGQNI 274
>gb|AUD56964.1| ribosomal protein subunit S4 (mitochondrion) [Cubanola domingensis]
Length = 276
Score = 60.8 bits (146), Expect = 9e-08
Identities = 28/30 (93%), Positives = 28/30 (93%)
Frame = +1
Query: 1 GPNIGHIPHDIRLKDLNLLLWSGNGYGQNI 90
GPNIGHIPHDIRLKDLNLLL SGNG GQNI
Sbjct: 247 GPNIGHIPHDIRLKDLNLLLRSGNGRGQNI 276
>gb|AUD56965.1| ribosomal protein subunit S4 (mitochondrion) [Deppea grandiflora]
gb|AUD56970.1| ribosomal protein subunit S4 (mitochondrion) [Hillia triflora]
Length = 276
Score = 60.8 bits (146), Expect = 9e-08
Identities = 28/30 (93%), Positives = 28/30 (93%)
Frame = +1
Query: 1 GPNIGHIPHDIRLKDLNLLLWSGNGYGQNI 90
GPNIGHIPHDIRLKDLNLLL SGNG GQNI
Sbjct: 247 GPNIGHIPHDIRLKDLNLLLRSGNGRGQNI 276
>gb|AUD56984.1| ribosomal protein subunit S4 (mitochondrion) [Rondeletia odorata]
Length = 276
Score = 60.8 bits (146), Expect = 9e-08
Identities = 28/30 (93%), Positives = 28/30 (93%)
Frame = +1
Query: 1 GPNIGHIPHDIRLKDLNLLLWSGNGYGQNI 90
GPNIGHIPHDIRLKDLNLLL SGNG GQNI
Sbjct: 247 GPNIGHIPHDIRLKDLNLLLRSGNGRGQNI 276
>gb|AUD56961.1| ribosomal protein subunit S4 (mitochondrion) [Cephalanthus
occidentalis]
Length = 282
Score = 60.8 bits (146), Expect = 9e-08
Identities = 28/30 (93%), Positives = 28/30 (93%)
Frame = +1
Query: 1 GPNIGHIPHDIRLKDLNLLLWSGNGYGQNI 90
GPNIGHIPHDIRLKDLNLLL SGNG GQNI
Sbjct: 253 GPNIGHIPHDIRLKDLNLLLRSGNGRGQNI 282
>ref|XP_010096993.1| uncharacterized protein LOC21407636 [Morus notabilis]
gb|EXB66620.1| Ribosomal protein S4 [Morus notabilis]
Length = 307
Score = 60.8 bits (146), Expect = 1e-07
Identities = 28/30 (93%), Positives = 28/30 (93%)
Frame = +1
Query: 1 GPNIGHIPHDIRLKDLNLLLWSGNGYGQNI 90
GPNIGHIPHDIRLKDLNLLL SGNG GQNI
Sbjct: 278 GPNIGHIPHDIRLKDLNLLLRSGNGRGQNI 307
>ref|YP_009243660.1| ribosomal protein S4 (mitochondrion) [Cannabis sativa]
gb|ALF04067.1| ribosomal protein S4 (mitochondrion) [Cannabis sativa]
gb|AMR97554.1| ribosomal protein S4 (mitochondrion) [Cannabis sativa]
gb|ANC49136.1| ribosomal protein S4 (mitochondrion) [Cannabis sativa]
Length = 352
Score = 60.8 bits (146), Expect = 1e-07
Identities = 28/30 (93%), Positives = 28/30 (93%)
Frame = +1
Query: 1 GPNIGHIPHDIRLKDLNLLLWSGNGYGQNI 90
GPNIGHIPHDIRLKDLNLLL SGNG GQNI
Sbjct: 323 GPNIGHIPHDIRLKDLNLLLRSGNGRGQNI 352