BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon23_contig00035680
         (957 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AKJ77609.1| Ycf15 (chloroplast) [Dioscorea nipponica]              175   2e-51
gb|AKJ77604.1| Ycf15 (chloroplast) [Dioscorea nipponica]              130   1e-34
gb|AKF01116.1| hypothetical chloroplast RF15 (chloroplast) [Bact...   123   1e-31
gb|AKF01040.1| hypothetical chloroplast RF15 (chloroplast) [Atta...   122   4e-31
gb|AKF00542.1| hypothetical chloroplast RF15 (chloroplast) [Roys...   118   9e-30
ref|YP_004891653.1| unnamed protein product (chloroplast) [Nicot...    61   2e-24
ref|YP_009040365.1| hypothetical protein [Hyoscyamus niger] >gi|...    61   3e-24
ref|YP_008239213.1| hypothetical chloroplast RF15 (chloroplast) ...   105   3e-24
ref|YP_008239136.1| hypothetical chloroplast RF15 (chloroplast) ...   105   3e-24
ref|YP_009469484.1| Ycf15 (chloroplast) [Anemoclema glaucifolium...    92   4e-23
ref|YP_009269888.1| hypothetical chloroplast RF15 (chloroplast) ...    99   7e-23
ref|NP_043074.1| hypothetical protein ZemaCp073 (chloroplast) [Z...   100   1e-22
gb|KQJ95764.1| hypothetical protein BRADI_3g18883v3, partial [Br...    98   7e-22
ref|YP_009245295.1| ycf15 (chloroplast) [Eriochrysis cf. cayenne...    98   8e-22
ref|XP_013443676.1| ycf15 protein, putative [Medicago truncatula...   100   1e-21
gb|KQJ86849.1| hypothetical protein BRADI_4g08051v3, partial [Br...    97   1e-21
gb|ACI43242.1| unknown (chloroplast) [Coix lacryma-jobi] >gi|209...    97   2e-21
gb|PNT67434.1| hypothetical protein BRADI_3g27344v3, partial [Br...    95   4e-21
gb|PHT97076.1| hypothetical protein BC332_33997 [Capsicum chinense]    56   6e-21
ref|YP_009269692.1| hypothetical chloroplast RF15 (chloroplast) ...    93   2e-20

>gb|AKJ77609.1| Ycf15 (chloroplast) [Dioscorea nipponica]
          Length = 126

 Score =  175 bits (443), Expect = 2e-51
 Identities = 99/153 (64%), Positives = 100/153 (65%), Gaps = 2/153 (1%)
 Frame = -1

Query: 660 IFTTKRYWILFRIGPERRRKAGMPTGVCLFSNSPDPIVPILGTSSAKVTE*VSRQSLKRT 481
           IFTTKRYWILFRIGPERRR+AGMPT VCLFSNSPDPIVPI GTSSAKVTE VSRQSLKR 
Sbjct: 20  IFTTKRYWILFRIGPERRREAGMPTDVCLFSNSPDPIVPIFGTSSAKVTEWVSRQSLKR- 78

Query: 480 M*CTLSAGLRVLVGILLEVSINLPLCDSC*IIYSGGGAGRTISKRTPHSLDREDRQDFVI 301
                                                        TPHSLDREDRQDFVI
Sbjct: 79  ---------------------------------------------TPHSLDREDRQDFVI 93

Query: 300 CCRTY--SNSLDSDRGDRRNTSYQQIRYSVYQY 208
            CRTY  SNS DSDRGDRRNTSYQQIRYSVYQY
Sbjct: 94  RCRTYSNSNSPDSDRGDRRNTSYQQIRYSVYQY 126


>gb|AKJ77604.1| Ycf15 (chloroplast) [Dioscorea nipponica]
          Length = 85

 Score =  130 bits (328), Expect = 1e-34
 Identities = 78/131 (59%), Positives = 78/131 (59%), Gaps = 2/131 (1%)
 Frame = -1

Query: 594 MPTGVCLFSNSPDPIVPILGTSSAKVTE*VSRQSLKRTM*CTLSAGLRVLVGILLEVSIN 415
           MPT VCLFSNSPDPIVPI GTSSAKVTE VSRQSLK                        
Sbjct: 1   MPTDVCLFSNSPDPIVPIFGTSSAKVTEWVSRQSLK------------------------ 36

Query: 414 LPLCDSC*IIYSGGGAGRTISKRTPHSLDREDRQDFVICCRTY--SNSLDSDRGDRRNTS 241
                                 RTPHSLDREDRQDFVI CRTY  SNS DSDRGDRRNTS
Sbjct: 37  ----------------------RTPHSLDREDRQDFVIRCRTYSNSNSPDSDRGDRRNTS 74

Query: 240 YQQIRYSVYQY 208
           YQQIRYSVYQY
Sbjct: 75  YQQIRYSVYQY 85


>gb|AKF01116.1| hypothetical chloroplast RF15 (chloroplast) [Bactris major]
 gb|AKF01189.1| hypothetical chloroplast RF15 (chloroplast) [Beccariophoenix
           madagascariensis]
 gb|AKF01208.1| hypothetical chloroplast RF15 (chloroplast) [Beccariophoenix
           madagascariensis]
          Length = 107

 Score =  123 bits (309), Expect = 1e-31
 Identities = 61/64 (95%), Positives = 61/64 (95%)
 Frame = -1

Query: 675 VHPIQIFTTKRYWILFRIGPERRRKAGMPTGVCLFSNSPDPIVPILGTSSAKVTE*VSRQ 496
           V PIQIFTTKRYWILFRIGPERRRKAGMPT VCLFSNSPDPIVPILGTSSAKVTE VSRQ
Sbjct: 20  VRPIQIFTTKRYWILFRIGPERRRKAGMPTDVCLFSNSPDPIVPILGTSSAKVTEWVSRQ 79

Query: 495 SLKR 484
           SLKR
Sbjct: 80  SLKR 83


>gb|AKF01040.1| hypothetical chloroplast RF15 (chloroplast) [Attalea speciosa]
 gb|AOX12842.1| hypothetical chloroplast RF15 (chloroplast) [Cocos nucifera]
 gb|AOX12863.1| hypothetical chloroplast RF15 (chloroplast) [Cocos nucifera]
          Length = 107

 Score =  122 bits (306), Expect = 4e-31
 Identities = 60/64 (93%), Positives = 61/64 (95%)
 Frame = -1

Query: 675 VHPIQIFTTKRYWILFRIGPERRRKAGMPTGVCLFSNSPDPIVPILGTSSAKVTE*VSRQ 496
           V PIQIFTTKRYWILFRIGPERRR+AGMPT VCLFSNSPDPIVPILGTSSAKVTE VSRQ
Sbjct: 20  VRPIQIFTTKRYWILFRIGPERRRRAGMPTDVCLFSNSPDPIVPILGTSSAKVTEWVSRQ 79

Query: 495 SLKR 484
           SLKR
Sbjct: 80  SLKR 83


>gb|AKF00542.1| hypothetical chloroplast RF15 (chloroplast) [Roystonea regia]
          Length = 85

 Score =  118 bits (295), Expect = 9e-30
 Identities = 58/61 (95%), Positives = 59/61 (96%)
 Frame = -1

Query: 666 IQIFTTKRYWILFRIGPERRRKAGMPTGVCLFSNSPDPIVPILGTSSAKVTE*VSRQSLK 487
           +QIFTTKRYWILFRIGPERRRKAGMPT VCLFSNSPDPIVPILGTSSAKVTE VSRQSLK
Sbjct: 1   MQIFTTKRYWILFRIGPERRRKAGMPTDVCLFSNSPDPIVPILGTSSAKVTEWVSRQSLK 60

Query: 486 R 484
           R
Sbjct: 61  R 61


>ref|YP_004891653.1| unnamed protein product (chloroplast) [Nicotiana undulata]
 ref|YP_004891682.1| unnamed protein product (chloroplast) [Nicotiana undulata]
 emb|CAA77388.1| hypothetical protein (chloroplast) [Nicotiana tabacum]
 emb|CAA77405.1| hypothetical protein (chloroplast) [Nicotiana tabacum]
 dbj|BAE46700.1| hypothetical protein (chloroplast) [Nicotiana sylvestris]
 dbj|BAE46730.1| hypothetical protein (chloroplast) [Nicotiana sylvestris]
 dbj|BAE48049.1| hypothetical protein (chloroplast) [Nicotiana tomentosiformis]
 dbj|BAE48079.1| hypothetical protein (chloroplast) [Nicotiana tomentosiformis]
 gb|AEO95591.1| hypothetical protein (chloroplast) [Nicotiana undulata]
 gb|AEO95639.1| hypothetical protein (chloroplast) [Nicotiana undulata]
 gb|AEO95701.1| hypothetical protein [synthetic construct]
 gb|AEO95747.1| hypothetical protein [synthetic construct]
 prf||1211235CC ORF 115
          Length = 115

 Score = 61.2 bits (147), Expect(3) = 2e-24
 Identities = 30/39 (76%), Positives = 34/39 (87%)
 Frame = +2

Query: 371 PPPEYMIQQESHRGRLIETSSKIPTSTRNPADKVHYIVR 487
           PPPEYM+QQESH+GRL ETS K+P   RNPADKVHYIV+
Sbjct: 55  PPPEYMLQQESHKGRL-ETSGKMP--ARNPADKVHYIVQ 90



 Score = 56.6 bits (135), Expect(3) = 2e-24
 Identities = 28/39 (71%), Positives = 29/39 (74%)
 Frame = +3

Query: 264 DPSPSCWNRFGSRSRNLGDLLYLMNEESVWKSSAPRHPP 380
           DPS   WN+FGS SRNLGDLLYLMN ES  KSSA   PP
Sbjct: 19  DPSSWNWNKFGSGSRNLGDLLYLMNGESALKSSALHPPP 57



 Score = 44.3 bits (103), Expect(3) = 2e-24
 Identities = 20/22 (90%), Positives = 20/22 (90%)
 Frame = +1

Query: 493 GLATYSFSDFGTGRSQNGYYRV 558
           GLATY FSDFGTGRSQNG YRV
Sbjct: 91  GLATYPFSDFGTGRSQNGDYRV 112


>ref|YP_009040365.1| hypothetical protein [Hyoscyamus niger]
 gb|AGU46513.1| hypothetical protein (plastid) [Hyoscyamus niger]
          Length = 115

 Score = 60.8 bits (146), Expect(3) = 3e-24
 Identities = 30/38 (78%), Positives = 33/38 (86%)
 Frame = +2

Query: 371 PPPEYMIQQESHRGRLIETSSKIPTSTRNPADKVHYIV 484
           PPPEYM+QQESH+GRL ETS K+P   RNPADKVHYIV
Sbjct: 55  PPPEYMLQQESHKGRL-ETSGKMP--ARNPADKVHYIV 89



 Score = 56.6 bits (135), Expect(3) = 3e-24
 Identities = 28/39 (71%), Positives = 29/39 (74%)
 Frame = +3

Query: 264 DPSPSCWNRFGSRSRNLGDLLYLMNEESVWKSSAPRHPP 380
           DPS   WN+FGS SRNLGDLLYLMN ES  KSSA   PP
Sbjct: 19  DPSSWNWNKFGSGSRNLGDLLYLMNGESALKSSALHPPP 57



 Score = 44.3 bits (103), Expect(3) = 3e-24
 Identities = 20/22 (90%), Positives = 20/22 (90%)
 Frame = +1

Query: 493 GLATYSFSDFGTGRSQNGYYRV 558
           GLATY FSDFGTGRSQNG YRV
Sbjct: 91  GLATYPFSDFGTGRSQNGDYRV 112


>ref|YP_008239213.1| hypothetical chloroplast RF15 (chloroplast) [Secale cereale]
 gb|AGP51110.1| hypothetical chloroplast RF15 (chloroplast) [Secale cereale]
          Length = 132

 Score =  105 bits (261), Expect = 3e-24
 Identities = 51/61 (83%), Positives = 53/61 (86%)
 Frame = -1

Query: 675 VHPIQIFTTKRYWILFRIGPERRRKAGMPTGVCLFSNSPDPIVPILGTSSAKVTE*VSRQ 496
           V PI IF TKRYWILFRIGPERRRKA MPT +CLFSNSPDPIVP+ GTSSAKVTE VS Q
Sbjct: 46  VRPILIFRTKRYWILFRIGPERRRKAEMPTDLCLFSNSPDPIVPVFGTSSAKVTEWVSHQ 105

Query: 495 S 493
           S
Sbjct: 106 S 106


>ref|YP_008239136.1| hypothetical chloroplast RF15 (chloroplast) [Triticum monococcum]
 ref|YP_008474343.1| hypothetical chloroplast RF15 (chloroplast) [Aegilops tauschii]
 ref|YP_008474434.1| hypothetical chloroplast RF15 (chloroplast) [Aegilops speltoides]
 ref|YP_008963948.1| hypothetical chloroplast RF15 (chloroplast) [Aegilops geniculata]
 ref|YP_008963869.1| hypothetical chloroplast RF15 (chloroplast) [Aegilops cylindrica]
 gb|AFH89553.1| hypothetical chloroplast RF15 (chloroplast) [Aegilops tauschii]
 gb|AFN42416.1| hypothetical chloroplast RF15 (chloroplast) [Aegilops speltoides]
 gb|AGP50797.1| hypothetical chloroplast RF15 (chloroplast) [Hordeum vulgare subsp.
           vulgare]
 gb|AGP50874.1| hypothetical chloroplast RF15 (chloroplast) [Hordeum vulgare subsp.
           spontaneum]
 gb|AGP50954.1| hypothetical chloroplast RF15 (chloroplast) [Hordeum vulgare subsp.
           spontaneum]
 gb|AGP51034.1| hypothetical chloroplast RF15 (chloroplast) [Triticum monococcum]
 gb|AGP51189.1| hypothetical chloroplast RF15 (chloroplast) [Triticum monococcum
           subsp. aegilopoides]
 gb|AGP51326.1| hypothetical chloroplast RF2 (chloroplast) [Triticum aestivum]
 gb|AGY92899.1| hypothetical chloroplast RF15 (chloroplast) [Aegilops cylindrica]
 gb|AGY92978.1| hypothetical chloroplast RF15 (chloroplast) [Aegilops geniculata]
          Length = 132

 Score =  105 bits (261), Expect = 3e-24
 Identities = 51/61 (83%), Positives = 53/61 (86%)
 Frame = -1

Query: 675 VHPIQIFTTKRYWILFRIGPERRRKAGMPTGVCLFSNSPDPIVPILGTSSAKVTE*VSRQ 496
           V PI IF TKRYWILFRIGPERRRKA MPT +CLFSNSPDPIVP+ GTSSAKVTE VS Q
Sbjct: 46  VRPILIFRTKRYWILFRIGPERRRKAEMPTDLCLFSNSPDPIVPVFGTSSAKVTEWVSHQ 105

Query: 495 S 493
           S
Sbjct: 106 S 106


>ref|YP_009469484.1| Ycf15 (chloroplast) [Anemoclema glaucifolium]
 ref|YP_009469501.1| Ycf15 (chloroplast) [Anemoclema glaucifolium]
 gb|AVD96771.1| Ycf15 (chloroplast) [Anemoclema glaucifolium]
 gb|AVD96772.1| Ycf15 (chloroplast) [Anemoclema glaucifolium]
          Length = 112

 Score = 92.4 bits (228), Expect(3) = 4e-23
 Identities = 54/75 (72%), Positives = 59/75 (78%), Gaps = 4/75 (5%)
 Frame = -1

Query: 441 GILLEVSI-NLPLCDSC*IIYSGG-GAGRTISKRTPHSLDREDRQDFVICCRTYSNSL-- 274
           GIL EVSI ++  C     +Y+ G GAGRTISK TPHSLDRE RQDFVICCRTYSNS   
Sbjct: 25  GILPEVSIVSIYPCVIPVEVYTRGVGAGRTISKWTPHSLDREGRQDFVICCRTYSNSKRP 84

Query: 273 DSDRGDRRNTSYQQI 229
           DSDRGDRRN+SYQQI
Sbjct: 85  DSDRGDRRNSSYQQI 99



 Score = 39.7 bits (91), Expect(3) = 4e-23
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = -3

Query: 511 MSKSPIPKTDYVMYFIRWV 455
           M KSP+PKTDYVMYFI WV
Sbjct: 1   MGKSPLPKTDYVMYFICWV 19



 Score = 25.8 bits (55), Expect(3) = 4e-23
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = -3

Query: 238 STDKILGISILIRSEICY 185
           S  +ILGISI IRSEI Y
Sbjct: 95  SYQQILGISISIRSEISY 112


>ref|YP_009269888.1| hypothetical chloroplast RF15 (chloroplast) [Epipactis
           veratrifolia]
 ref|YP_009269905.1| hypothetical chloroplast RF15 (chloroplast) [Epipactis
           veratrifolia]
 gb|ANT72796.1| hypothetical chloroplast RF15 (chloroplast) [Epipactis
           veratrifolia]
 gb|ANT72814.1| hypothetical chloroplast RF15 (chloroplast) [Epipactis
           veratrifolia]
          Length = 80

 Score = 99.0 bits (245), Expect(3) = 7e-23
 Identities = 51/60 (85%), Positives = 53/60 (88%)
 Frame = -1

Query: 657 FTTKRYWILFRIGPERRRKAGMPTGVCLFSNSPDPIVPILGTSSAKVTE*VSRQSLKRTM 478
           ++  R  ILFRIGPERRRKAGMPT VCLFSNSPDPIVPIL TSSAKVTE VSRQSLKRTM
Sbjct: 21  YSRPRGTILFRIGPERRRKAGMPTDVCLFSNSPDPIVPILRTSSAKVTEWVSRQSLKRTM 80



 Score = 29.3 bits (64), Expect(3) = 7e-23
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = -3

Query: 718 ILIVLFRSKDIHVGG 674
           +LIVLFRSKDIH GG
Sbjct: 1   MLIVLFRSKDIHGGG 15



 Score = 28.9 bits (63), Expect(3) = 7e-23
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = -2

Query: 674 FILFRYSRPRGT 639
           F+LFRYSRPRGT
Sbjct: 16  FVLFRYSRPRGT 27


>ref|NP_043074.1| hypothetical protein ZemaCp073 (chloroplast) [Zea mays]
 ref|NP_043104.1| hypothetical protein ZemaCp103 (chloroplast) [Zea mays]
 ref|YP_024326.1| hypothetical protein PS017 [Saccharum hybrid cultivar SP-80-3280]
 ref|YP_024354.1| hypothetical protein PS069 [Saccharum hybrid cultivar SP-80-3280]
 ref|YP_054680.1| hypothetical protein SaofCp074 (chloroplast) [Saccharum hybrid
           cultivar NCo 310]
 ref|YP_054713.1| hypothetical protein SaofCp107 (chloroplast) [Saccharum hybrid
           cultivar NCo 310]
 ref|YP_009192458.1| hypothetical protein MsaCp_p075 (chloroplast) [Miscanthus
           sacchariflorus]
 ref|YP_009192495.1| hypothetical protein MsaCp_p112 (chloroplast) [Miscanthus
           sacchariflorus]
 ref|YP_009192580.1| hypothetical protein MsiCp_p075 (chloroplast) [Miscanthus sinensis]
 ref|YP_009192617.1| hypothetical protein MsiCp_p112 (chloroplast) [Miscanthus sinensis]
 ref|YP_009240086.1| hypothetical chloroplast RF15 (plastid) [Panicum miliaceum]
 ref|YP_009240105.1| hypothetical chloroplast RF15 (plastid) [Panicum miliaceum]
 ref|YP_009245464.1| ycf15 (chloroplast) [Chrysopogon serrulatus]
 ref|YP_009245481.1| ycf15 (chloroplast) [Chrysopogon serrulatus]
 ref|YP_009271710.1| hypothetical chloroplast RF15 (chloroplast) [Saccharum
           arundinaceum]
 ref|YP_009271729.1| hypothetical chloroplast RF15 (chloroplast) [Saccharum
           arundinaceum]
 ref|YP_009332191.1| Ycf15 (chloroplast) [Panicum sumatrense]
 ref|YP_009332208.1| Ycf15 (chloroplast) [Panicum sumatrense]
 ref|YP_009389617.1| hypothetical chloroplast RF15 (chloroplast) [Saccharum officinarum]
 ref|YP_009389648.1| hypothetical chloroplast RF15 (chloroplast) [Saccharum officinarum]
 ref|YP_009421788.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus floridulus]
 ref|YP_009421819.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus floridulus]
 ref|YP_009421894.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus junceus]
 ref|YP_009421925.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus junceus]
 ref|YP_009422000.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus
           transmorrisonensis]
 ref|YP_009422031.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus
           transmorrisonensis]
 ref|YP_009422106.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus x
           giganteus]
 ref|YP_009422137.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus x
           giganteus]
 sp|P46666.1|YCF15_MAIZE PUTATIVE PSEUDOGENE: RecName: Full=Putative uncharacterized protein
           ycf15; AltName: Full=ORF 99
 sp|Q6ENR3.1|YCF15_SACOF PUTATIVE PSEUDOGENE: RecName: Full=Putative uncharacterized protein
           ycf15; AltName: Full=ORF99
 sp|Q6L3C4.1|YCF15_SACHY RecName: Full=Putative uncharacterized protein ycf15
 emb|CAA60336.1| hypothetical protein (chloroplast) [Zea mays]
 emb|CAA60365.1| hypothetical protein (chloroplast) [Zea mays]
 gb|AAT44641.1| hypothetical protein PS017 (chloroplast) [Saccharum hybrid cultivar
           SP80-3280]
 gb|AAT44668.1| unknown (chloroplast) [Saccharum hybrid cultivar SP80-3280]
 dbj|BAD27343.1| hypothetical protein (chloroplast) [Saccharum hybrid cultivar NCo
           310]
 dbj|BAD27377.1| hypothetical protein (chloroplast) [Saccharum hybrid cultivar NCo
           310]
 gb|AHV90369.1| hypothetical chloroplast RF15 (chloroplast) [Setaria italica]
 gb|AHV90388.1| hypothetical chloroplast RF15 (chloroplast) [Setaria italica]
 gb|ALP29685.1| hypothetical protein MsaCp_p075 (chloroplast) [Miscanthus
           sacchariflorus]
 gb|ALP29722.1| hypothetical protein MsaCp_p112 (chloroplast) [Miscanthus
           sacchariflorus]
 gb|ALP29807.1| hypothetical protein MsiCp_p075 (chloroplast) [Miscanthus sinensis]
 gb|ALP29844.1| hypothetical protein MsiCp_p112 (chloroplast) [Miscanthus sinensis]
 gb|AMN87236.1| hypothetical chloroplast RF15 (plastid) [Panicum miliaceum]
 gb|AMN87255.1| hypothetical chloroplast RF15 (plastid) [Panicum miliaceum]
 gb|AMR98047.1| ycf15 (chloroplast) [Chrysopogon serrulatus]
 gb|AMR98064.1| ycf15 (chloroplast) [Chrysopogon serrulatus]
 dbj|BAV38295.1| hypothetical chloroplast RF15 (chloroplast) [Saccharum
           arundinaceum]
 dbj|BAV38315.1| hypothetical chloroplast RF15 (chloroplast) [Saccharum
           arundinaceum]
 dbj|BAV38382.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus sinensis]
 dbj|BAV38400.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus sinensis]
 gb|AOD27724.1| putative uncharacterized protein ycf15 (chloroplast) [Saccharum
           hybrid cultivar RB867515]
 gb|AOD27744.1| putative uncharacterized protein ycf15 (chloroplast) [Saccharum
           hybrid cultivar RB867515]
 gb|APH82158.1| Ycf15 (chloroplast) [Panicum sumatrense]
 gb|APH82175.1| Ycf15 (chloroplast) [Panicum sumatrense]
 gb|ARS74330.1| ycf15 (chloroplast) [Chrysopogon zizanioides]
 gb|ARS74349.1| ycf15 (chloroplast) [Chrysopogon zizanioides]
 gb|ARS74416.1| ycf15 (chloroplast) [Chrysopogon zizanioides]
 gb|ARS74435.1| ycf15 (chloroplast) [Chrysopogon zizanioides]
 emb|CRK62358.1| hypothetical chloroplast RF15 (chloroplast) [Saccharum spontaneum]
 emb|CRK62390.1| hypothetical chloroplast RF15 (chloroplast) [Saccharum spontaneum]
 emb|CRK62586.1| hypothetical chloroplast RF15 (chloroplast) [Saccharum officinarum]
 emb|CRK62618.1| hypothetical chloroplast RF15 (chloroplast) [Saccharum officinarum]
 emb|CRK62477.1| hypothetical chloroplast RF15 (chloroplast) [Saccharum hybrid
           cultivar]
 emb|CRK62509.1| hypothetical chloroplast RF15 (chloroplast) [Saccharum hybrid
           cultivar]
 emb|CRY90712.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus floridulus]
 emb|CRY90744.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus floridulus]
 emb|CRY89078.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus junceus]
 emb|CRY89110.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus junceus]
 emb|CRY89187.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus
           sacchariflorus]
 emb|CRY89219.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus
           sacchariflorus]
 emb|CRY89296.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus
           sacchariflorus]
 emb|CRY89328.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus
           sacchariflorus]
 emb|CRY89405.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus
           sacchariflorus]
 emb|CRY89437.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus
           sacchariflorus]
 emb|CRY89514.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus sinensis
           subsp. condensatus]
 emb|CRY89546.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus sinensis
           subsp. condensatus]
 emb|CRY89623.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus sinensis
           subsp. sinensis]
 emb|CRY89655.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus sinensis
           subsp. sinensis]
 emb|CRY89732.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus sinensis
           subsp. sinensis]
 emb|CRY89764.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus sinensis
           subsp. sinensis]
 emb|CRY89841.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus sinensis
           subsp. sinensis]
 emb|CRY89873.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus sinensis
           subsp. sinensis]
 emb|CRY89950.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus sinensis
           var. purpurascens]
 emb|CRY89982.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus sinensis
           var. purpurascens]
 emb|CRY90059.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus sinensis
           subsp. sinensis]
 emb|CRY90091.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus sinensis
           subsp. sinensis]
 emb|CRY90168.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus sinensis
           subsp. sinensis]
 emb|CRY90200.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus sinensis
           subsp. sinensis]
 emb|CRY90277.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus sinensis
           subsp. sinensis]
 emb|CRY90309.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus sinensis
           subsp. sinensis]
 emb|CRY90385.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus sinensis
           subsp. sinensis]
 emb|CRY90417.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus sinensis
           subsp. sinensis]
 emb|CRY90494.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus
           transmorrisonensis]
 emb|CRY90526.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus
           transmorrisonensis]
 emb|CRY90603.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus x
           giganteus]
 emb|CRY90635.1| hypothetical chloroplast RF15 (chloroplast) [Miscanthus x
           giganteus]
 gb|ASV52297.1| hypothetical protein (chloroplast) [Saccharum officinarum]
 gb|ASV52330.1| hypothetical protein (chloroplast) [Saccharum officinarum]
 emb|CUS18930.1| hypothetical chloroplast RF15 (plastid) [Miscanthus sinensis subsp.
           sinensis]
 emb|CUS18963.1| hypothetical chloroplast RF15 (plastid) [Miscanthus sinensis subsp.
           sinensis]
 emb|CUS19196.1| hypothetical chloroplast RF15 (chloroplast) [Saccharum hybrid
           cultivar]
 emb|CUS19229.1| hypothetical chloroplast RF15 (chloroplast) [Saccharum hybrid
           cultivar]
 emb|CUS19089.1| hypothetical chloroplast RF15 (chloroplast) [Saccharum spontaneum]
 emb|CUS19122.1| hypothetical chloroplast RF15 (chloroplast) [Saccharum spontaneum]
          Length = 99

 Score =  100 bits (248), Expect = 1e-22
 Identities = 49/61 (80%), Positives = 52/61 (85%)
 Frame = -1

Query: 675 VHPIQIFTTKRYWILFRIGPERRRKAGMPTGVCLFSNSPDPIVPILGTSSAKVTE*VSRQ 496
           V PI IF TKR WILFRIGPERRR+A MPT +CLFSNSPDPIVP+ GTSSAKVTE VS Q
Sbjct: 17  VRPILIFRTKRSWILFRIGPERRREAEMPTDLCLFSNSPDPIVPVFGTSSAKVTEWVSHQ 76

Query: 495 S 493
           S
Sbjct: 77  S 77


>gb|KQJ95764.1| hypothetical protein BRADI_3g18883v3, partial [Brachypodium
           distachyon]
          Length = 96

 Score = 97.8 bits (242), Expect = 7e-22
 Identities = 48/61 (78%), Positives = 51/61 (83%)
 Frame = -1

Query: 675 VHPIQIFTTKRYWILFRIGPERRRKAGMPTGVCLFSNSPDPIVPILGTSSAKVTE*VSRQ 496
           V PI IF TKRYWILFRIGPERRRKA MPT + LFSNSP+PIVP+ GTS AKVTE VS Q
Sbjct: 14  VRPILIFRTKRYWILFRIGPERRRKAEMPTDLYLFSNSPEPIVPVFGTSGAKVTEWVSHQ 73

Query: 495 S 493
           S
Sbjct: 74  S 74


>ref|YP_009245295.1| ycf15 (chloroplast) [Eriochrysis cf. cayennensis 365-2]
 ref|YP_009245312.1| ycf15 (chloroplast) [Eriochrysis cf. cayennensis 365-2]
 ref|YP_009245380.1| ycf15 (chloroplast) [Eriochrysis laxa]
 ref|YP_009245397.1| ycf15 (chloroplast) [Eriochrysis laxa]
 gb|AMR97708.1| ycf15 (chloroplast) [Eriochrysis villosa]
 gb|AMR97725.1| ycf15 (chloroplast) [Eriochrysis villosa]
 gb|AMR97793.1| ycf15 (chloroplast) [Eriochrysis cayennensis]
 gb|AMR97810.1| ycf15 (chloroplast) [Eriochrysis cayennensis]
 gb|AMR97878.1| ycf15 (chloroplast) [Eriochrysis cf. cayennensis 365-2]
 gb|AMR97895.1| ycf15 (chloroplast) [Eriochrysis cf. cayennensis 365-2]
 gb|AMR97963.1| ycf15 (chloroplast) [Eriochrysis laxa]
 gb|AMR97980.1| ycf15 (chloroplast) [Eriochrysis laxa]
          Length = 99

 Score = 97.8 bits (242), Expect = 8e-22
 Identities = 48/61 (78%), Positives = 51/61 (83%)
 Frame = -1

Query: 675 VHPIQIFTTKRYWILFRIGPERRRKAGMPTGVCLFSNSPDPIVPILGTSSAKVTE*VSRQ 496
           V PI IF TKR WILFRIGPERRR+A MP  +CLFSNSPDPIVP+ GTSSAKVTE VS Q
Sbjct: 17  VRPILIFRTKRSWILFRIGPERRREAEMPMDLCLFSNSPDPIVPVFGTSSAKVTEWVSHQ 76

Query: 495 S 493
           S
Sbjct: 77  S 77


>ref|XP_013443676.1| ycf15 protein, putative [Medicago truncatula]
 gb|KEH17701.1| ycf15 protein, putative [Medicago truncatula]
          Length = 194

 Score =  100 bits (248), Expect = 1e-21
 Identities = 47/55 (85%), Positives = 49/55 (89%)
 Frame = -1

Query: 675 VHPIQIFTTKRYWILFRIGPERRRKAGMPTGVCLFSNSPDPIVPILGTSSAKVTE 511
           V PI IF TKRYWILFRIGPERRRKA MPT +CLFSNSPDPIVP+ GTSSAKVTE
Sbjct: 46  VRPILIFRTKRYWILFRIGPERRRKAEMPTDLCLFSNSPDPIVPVFGTSSAKVTE 100


>gb|KQJ86849.1| hypothetical protein BRADI_4g08051v3, partial [Brachypodium
           distachyon]
          Length = 96

 Score = 97.1 bits (240), Expect = 1e-21
 Identities = 47/61 (77%), Positives = 52/61 (85%)
 Frame = -1

Query: 675 VHPIQIFTTKRYWILFRIGPERRRKAGMPTGVCLFSNSPDPIVPILGTSSAKVTE*VSRQ 496
           V PI IF TKRYWILFRIGPERRRKA MPT + LFSNSP+PIVP+ GTSSA+VTE +S Q
Sbjct: 14  VRPILIFRTKRYWILFRIGPERRRKAEMPTDLSLFSNSPEPIVPVFGTSSAEVTESLSHQ 73

Query: 495 S 493
           S
Sbjct: 74  S 74


>gb|ACI43242.1| unknown (chloroplast) [Coix lacryma-jobi]
 gb|ACI43256.1| unknown (chloroplast) [Coix lacryma-jobi]
          Length = 99

 Score = 96.7 bits (239), Expect = 2e-21
 Identities = 48/61 (78%), Positives = 51/61 (83%)
 Frame = -1

Query: 675 VHPIQIFTTKRYWILFRIGPERRRKAGMPTGVCLFSNSPDPIVPILGTSSAKVTE*VSRQ 496
           V PI IF TKR WILFRIGPERRR+A MPT +CLFSNSPD IVP+ GTSSAKVTE VS Q
Sbjct: 17  VRPILIFRTKRSWILFRIGPERRREAEMPTDLCLFSNSPDRIVPVFGTSSAKVTEWVSHQ 76

Query: 495 S 493
           S
Sbjct: 77  S 77


>gb|PNT67434.1| hypothetical protein BRADI_3g27344v3, partial [Brachypodium
           distachyon]
 gb|PNT75429.1| hypothetical protein BRADI_1g32457v3, partial [Brachypodium
           distachyon]
 gb|PNT75857.1| hypothetical protein BRADI_1g05793v3, partial [Brachypodium
           distachyon]
          Length = 75

 Score = 95.1 bits (235), Expect = 4e-21
 Identities = 45/53 (84%), Positives = 48/53 (90%)
 Frame = -1

Query: 651 TKRYWILFRIGPERRRKAGMPTGVCLFSNSPDPIVPILGTSSAKVTE*VSRQS 493
           TKRYWILFRIGPERRRKA MPT +CLFSNSP+PIVP+ GTSSAKVTE VS QS
Sbjct: 1   TKRYWILFRIGPERRRKAEMPTDLCLFSNSPEPIVPVFGTSSAKVTEWVSHQS 53


>gb|PHT97076.1| hypothetical protein BC332_33997 [Capsicum chinense]
          Length = 471

 Score = 56.2 bits (134), Expect(3) = 6e-21
 Identities = 27/39 (69%), Positives = 33/39 (84%)
 Frame = +2

Query: 371 PPPEYMIQQESHRGRLIETSSKIPTSTRNPADKVHYIVR 487
           P PEYM+QQESH+G ++ETS K+P   RNPADKVHYIV+
Sbjct: 36  PSPEYMLQQESHKG-ILETSGKMP--ARNPADKVHYIVQ 71



 Score = 49.7 bits (117), Expect(3) = 6e-21
 Identities = 25/32 (78%), Positives = 26/32 (81%)
 Frame = +3

Query: 282 WNRFGSRSRNLGDLLYLMNEESVWKSSAPRHP 377
           WN+FGS SRNLGDLLYLMN ES  KSSA  HP
Sbjct: 6   WNKFGSGSRNLGDLLYLMNGESALKSSA-LHP 36



 Score = 44.3 bits (103), Expect(3) = 6e-21
 Identities = 20/22 (90%), Positives = 20/22 (90%)
 Frame = +1

Query: 493 GLATYSFSDFGTGRSQNGYYRV 558
           GLATY FSDFGTGRSQNG YRV
Sbjct: 72  GLATYPFSDFGTGRSQNGDYRV 93


>ref|YP_009269692.1| hypothetical chloroplast RF15 (chloroplast) [Epipactis mairei]
 ref|YP_009269707.1| hypothetical chloroplast RF15 (chloroplast) [Epipactis mairei]
 gb|ANT72602.1| hypothetical chloroplast RF15 (chloroplast) [Epipactis mairei]
 gb|ANT72617.1| hypothetical chloroplast RF15 (chloroplast) [Epipactis mairei]
          Length = 61

 Score = 92.8 bits (229), Expect = 2e-20
 Identities = 47/50 (94%), Positives = 47/50 (94%)
 Frame = -1

Query: 627 RIGPERRRKAGMPTGVCLFSNSPDPIVPILGTSSAKVTE*VSRQSLKRTM 478
           RIGPERRRKAGMPT VCLFSNSPDPIVPIL TSSAKVTE VSRQSLKRTM
Sbjct: 12  RIGPERRRKAGMPTDVCLFSNSPDPIVPILRTSSAKVTEWVSRQSLKRTM 61