BLASTX nr result
ID: Ophiopogon23_contig00032798
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon23_contig00032798
(743 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 35 4e-09
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group... 35 4e-09
gb|PHU12529.1| hypothetical protein BC332_19459 [Capsicum chinense] 40 8e-08
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 33 4e-07
gb|PHT34285.1| hypothetical protein CQW23_26085 [Capsicum baccatum] 35 2e-06
gb|OMO73383.1| Integrase, catalytic core [Corchorus capsularis] 43 5e-06
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gb|AAU89150.1| integrase core domain containing protein [Oryza sativa Japonica
Group]
gb|ABF98081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1322
Score = 35.4 bits (80), Expect(4) = 4e-09
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = -3
Query: 453 DGFNVLSVTNGLVGNKRRWIINSECSQYVCADMEMFSTYTSVR 325
D + L V G V + WI+++ CS ++C + + FS+Y SV+
Sbjct: 274 DSGDCLVVFAGYVASHDEWILDTACSFHICINRDWFSSYKSVQ 316
Score = 32.3 bits (72), Expect(4) = 4e-09
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = -3
Query: 741 LLLLC*LTSSYKNFRNAIICGRKKTIKISEVREHL 637
LLLLC L SSY NFR+ I+ R + + ++EV E L
Sbjct: 147 LLLLCSLPSSYANFRHTILLSRDE-LTLAEVYEAL 180
Score = 32.0 bits (71), Expect(4) = 4e-09
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -1
Query: 311 TIKFRSNDGYVTT--S*RVIPRSRYNLISLGALQR*GFKFKSEGDFMEVSK 165
+++ +++DG T R IP NLISL L G+K+ G ++VSK
Sbjct: 336 SVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSK 386
Score = 28.1 bits (61), Expect(4) = 4e-09
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 12/58 (20%)
Frame = -2
Query: 631 GHALSVREKNTNRSFTYNQKHKNH------------ICK*YHKKRHIKSDCWN*KNNQ 494
G AL VR ++ R++ + H CK KK H +CW +N +
Sbjct: 199 GEALQVRGRSEQRTYNDSNDHDKSQSRGRSKSRGKKFCKYCKKKNHFIEECWKLQNKE 256
>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
gb|AAT44170.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1175
Score = 34.7 bits (78), Expect(4) = 4e-09
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = -1
Query: 311 TIKFRSNDGYVTT--S*RVIPRSRYNLISLGALQR*GFKFKSEGDFMEVSK 165
+++ +++DG T R IPR NLISL L G+K+ G ++VSK
Sbjct: 231 SVQIKTHDGMTRTLKDVRHIPRMARNLISLSTLDAEGYKYSGSGGVVKVSK 281
Score = 32.7 bits (73), Expect(4) = 4e-09
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = -3
Query: 741 LLLLC*LTSSYKNFRNAIICGRKKTIKISEVREHL 637
LLLLC L SSY NFR+ I+ R + + ++EV E L
Sbjct: 42 LLLLCSLPSSYANFRDTILLSRSE-LTLAEVYEAL 75
Score = 31.6 bits (70), Expect(4) = 4e-09
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -3
Query: 417 VGNKRRWIINSECSQYVCADMEMFSTYTSVR 325
V + WI+++ CS ++C + + FS+Y SV+
Sbjct: 181 VSSHDEWILDTTCSFHICINRDWFSSYKSVQ 211
Score = 28.9 bits (63), Expect(4) = 4e-09
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 12/58 (20%)
Frame = -2
Query: 631 GHALSVREKNTNRSFT-YNQKHKNH-----------ICK*YHKKRHIKSDCWN*KNNQ 494
G AL VR ++ R++ N + KN CK KK H +CW +N +
Sbjct: 94 GEALQVRGRSEQRTYNDSNDRDKNQSRGRSKSRGKKFCKYCKKKNHFIEECWKLQNKE 151
>gb|PHU12529.1| hypothetical protein BC332_19459 [Capsicum chinense]
Length = 448
Score = 39.7 bits (91), Expect(3) = 8e-08
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = -1
Query: 311 TIKFRSNDGYVTT--S*RVIPRSRYNLISLGALQR*GFKFKSEGDFMEVSK 165
T++ + +DG V T + R +P + NLISLG L+ G K+ EG EVS+
Sbjct: 144 TVRIKMHDGIVRTLKNVRYVPELKKNLISLGTLESFGCKYTGEGGVFEVSR 194
Score = 38.1 bits (87), Expect(3) = 8e-08
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = -3
Query: 441 VLSVTNGLVGNKRRWIINSECSQYVCADMEMFSTYTSVRGVVL 313
+ VT + + WI++S CS ++C + ++FSTY V G V+
Sbjct: 87 IFLVTENISCSNNEWILDSACSFHMCPNKDLFSTYDPVEGGVI 129
Score = 26.6 bits (57), Expect(3) = 8e-08
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -2
Query: 622 LSVREKNTNRSFTYNQKHKNHICK*YHKKRHIKSDCWN*KNNQNSNQYIKSGH 464
L VR ++ +S + N +C HKK HIK +C QN + K+ H
Sbjct: 24 LFVRSRSNEKS-----RFSNSVCYYCHKKGHIKFNC---PKLQNKGKVKKNEH 68
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 33.1 bits (74), Expect(4) = 4e-07
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = -3
Query: 741 LLLLC*LTSSYKNFRNAIICGRKKTIKISEVREHL 637
LLLLC L SSY+NFR+ I+ R + + ++EV E L
Sbjct: 147 LLLLCSLPSSYENFRDTILLSRDE-LTLAEVYEAL 180
Score = 32.0 bits (71), Expect(4) = 4e-07
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -1
Query: 311 TIKFRSNDGYVTT--S*RVIPRSRYNLISLGALQR*GFKFKSEGDFMEVSK 165
+++ +++DG T R IP NLISL L G+K+ G ++VSK
Sbjct: 336 SVQIKTHDGITRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSK 386
Score = 31.2 bits (69), Expect(4) = 4e-07
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -3
Query: 453 DGFNVLSVTNGLVGNKRRWIINSECSQYVCADMEMFSTYTSVR 325
D + L V G V + WI+++ CS ++ + + FS+Y SV+
Sbjct: 274 DSGDCLVVFAGCVASHDEWILDTACSFHIYINRDWFSSYKSVQ 316
Score = 24.3 bits (51), Expect(4) = 4e-07
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -2
Query: 613 REKNTNRSFTYNQKHKNHICK*YHKKRHIKSDCWN*KNNQ 494
R+K+ +R + ++ K CK KK H +CW +N +
Sbjct: 219 RDKSKSRGRSKSRGKK--FCKYCKKKIHFIKECWKLQNKE 256
>gb|PHT34285.1| hypothetical protein CQW23_26085 [Capsicum baccatum]
Length = 569
Score = 35.4 bits (80), Expect(3) = 2e-06
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 13/74 (17%)
Frame = -2
Query: 652 GQGTS**GHALSVR------EKNTNRSFTYNQ-KHKNHICK*YHKKRHIKSDCWN*KN-- 500
G+G++ G L +R E N+ RS + ++ K +N +C+ HKK H+ S+C KN
Sbjct: 291 GEGSTTHGEGLFIRGRSSKKESNSERSQSRSKSKSRNVVCRYCHKKGHLISECCKLKNKE 350
Query: 499 ----NQNSNQYIKS 470
N+N +Q + S
Sbjct: 351 KHKENKNEHQNVDS 364
Score = 32.3 bits (72), Expect(3) = 2e-06
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -3
Query: 429 TNGLVGNKRRWIINSECSQYVCADMEMFSTYTSVRGVVL 313
TN + WI++S CS ++ + ++F+T+ SV G V+
Sbjct: 382 TNSSFKSNNEWILDSGCSYHMYPNRDLFTTFKSVGGGVI 420
Score = 31.6 bits (70), Expect(3) = 2e-06
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Frame = -1
Query: 311 TIKFRSNDGYVTT--S*RVIPRSRYNLISLGALQR*GFKFKSEGDFMEVSK----VVRAI 150
T++ + +DG V T R + + N+ISLG L+ G K+ EG ++ S+ +++A
Sbjct: 435 TVRIKMHDGMVRTLTDVRYVSDLKKNIISLGTLESLGCKYIGEGGVLKDSRDALVIIKAH 494
Query: 149 FPAMLVDI**CVLVYMLEDSMATG 78
P L Y L S+ TG
Sbjct: 495 RPGTL---------YTLLGSIVTG 509
>gb|OMO73383.1| Integrase, catalytic core [Corchorus capsularis]
Length = 1212
Score = 42.7 bits (99), Expect(2) = 5e-06
Identities = 39/148 (26%), Positives = 74/148 (50%), Gaps = 5/148 (3%)
Frame = -3
Query: 741 LLLLC*LTSSYKNFRNAIICGRKKTIKISEVR-EHLNKDTLYQLGRKTQTEVSHI-TRNT 568
L+LLC L S++NFR+ ++ GR TI + +V+ L+K+ ++ E S I TR
Sbjct: 146 LILLCSLPRSFQNFRDTMLYGR-DTIALKDVKYALLSKELQNKVSADVDGEASLIVTRGR 204
Query: 567 RIIYANSITR---RGTSNLTAGIKRTIRIPISTSNLAI*G*DGFNVLSVTNGLVGNKRRW 397
++ I R R S T+ I + + +S+ + G +VL+V+ G+ W
Sbjct: 205 NKEKSSGIARFRSRSKSRATSAIVQEGSSLVESSDDEV----GTDVLTVST--AGSANTW 258
Query: 396 IINSECSQYVCADMEMFSTYTSVRGVVL 313
++++ S ++ +F+T+ G V+
Sbjct: 259 VVDTGASYHMTFSRNLFTTFKEWNGSVM 286
Score = 36.2 bits (82), Expect(2) = 5e-06
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = -1
Query: 311 TIKFRSNDGYVTTS*R-VIPRSRYNLISLGALQR*GFKFKSEGDFMEVSK 165
+++ +++DG + T ++P R NLISLG L + G+K+ E ++VSK
Sbjct: 300 SVQIKTHDGTIRTFDAWLVPELRKNLISLGTLDKQGYKYSGENGQIKVSK 349