BLASTX nr result

ID: Ophiopogon23_contig00026736 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon23_contig00026736
         (560 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_015607733.1| PREDICTED: chromodomain-helicase-DNA-binding...    60   5e-07
ref|XP_015607729.1| PREDICTED: chromodomain-helicase-DNA-binding...    60   5e-07

>ref|XP_015607733.1| PREDICTED: chromodomain-helicase-DNA-binding protein 7 isoform X2
            [Cephus cinctus]
          Length = 4347

 Score = 59.7 bits (143), Expect = 5e-07
 Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
 Frame = -3

Query: 534  SSEPSFVQQQPLSPPVQTTTAIVTQ-----PPDSPVAQPQPIQIENQVQSQIAQPDQSNH 370
            S++P   QQ  L P  Q  + +  Q     P  SP+  PQ   I +Q Q Q   P+Q++ 
Sbjct: 910  STQPPQAQQPQLGPTQQAQSHMGPQQVGMMPQSSPMLPPQ---IPHQPQMQPQIPNQTSQ 966

Query: 369  IPDQSSQAVVGHIQNQTVAT-NQPNQVVHP--------PSNVPSVGIGSNYGDLPNISKP 217
            +  Q +Q   GH+  Q + T  Q   +V P        P+N P + +   +G+  NI KP
Sbjct: 967  LQAQPNQVQSGHVPPQQIPTVGQTGNMVMPPHQTAVPLPNNQPPLPV-QGFGEYTNIQKP 1025

Query: 216  PSMYSTDMLVGS 181
             +MY  DM+VGS
Sbjct: 1026 NNMYQNDMIVGS 1037


>ref|XP_015607729.1| PREDICTED: chromodomain-helicase-DNA-binding protein 7 isoform X1
            [Cephus cinctus]
 ref|XP_015607730.1| PREDICTED: chromodomain-helicase-DNA-binding protein 7 isoform X1
            [Cephus cinctus]
 ref|XP_015607732.1| PREDICTED: chromodomain-helicase-DNA-binding protein 7 isoform X1
            [Cephus cinctus]
          Length = 4413

 Score = 59.7 bits (143), Expect = 5e-07
 Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
 Frame = -3

Query: 534  SSEPSFVQQQPLSPPVQTTTAIVTQ-----PPDSPVAQPQPIQIENQVQSQIAQPDQSNH 370
            S++P   QQ  L P  Q  + +  Q     P  SP+  PQ   I +Q Q Q   P+Q++ 
Sbjct: 910  STQPPQAQQPQLGPTQQAQSHMGPQQVGMMPQSSPMLPPQ---IPHQPQMQPQIPNQTSQ 966

Query: 369  IPDQSSQAVVGHIQNQTVAT-NQPNQVVHP--------PSNVPSVGIGSNYGDLPNISKP 217
            +  Q +Q   GH+  Q + T  Q   +V P        P+N P + +   +G+  NI KP
Sbjct: 967  LQAQPNQVQSGHVPPQQIPTVGQTGNMVMPPHQTAVPLPNNQPPLPV-QGFGEYTNIQKP 1025

Query: 216  PSMYSTDMLVGS 181
             +MY  DM+VGS
Sbjct: 1026 NNMYQNDMIVGS 1037


Top