BLASTX nr result
ID: Ophiopogon23_contig00026446
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon23_contig00026446
(977 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PHT53674.1| hypothetical protein CQW23_08136 [Capsicum baccatum] 125 5e-45
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711... 104 1e-38
gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposo... 103 1e-37
gb|KYP65226.1| Retrovirus-related Pol polyprotein from transposo... 98 2e-37
gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposo... 94 2e-36
gb|KZV56298.1| hypothetical protein F511_00295 [Dorcoceras hygro... 86 7e-36
gb|KHN13665.1| Retrovirus-related Pol polyprotein from transposo... 85 9e-36
gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposo... 89 1e-34
gb|PNX96445.1| copia LTR rider [Trifolium pratense] 92 8e-34
gb|KYP36635.1| Retrovirus-related Pol polyprotein from transposo... 84 1e-33
gb|OTG30017.1| putative zinc finger, CCHC-type [Helianthus annuus] 91 1e-32
gb|KYP37021.1| Retrovirus-related Pol polyprotein from transposo... 84 7e-32
emb|CDP17738.1| unnamed protein product [Coffea canephora] 94 1e-31
gb|PON41343.1| Zinc finger, CCHC-type [Parasponia andersonii] 96 9e-31
gb|OMO83367.1| Integrase, catalytic core [Corchorus capsularis] 77 1e-29
gb|KYP46255.1| Retrovirus-related Pol polyprotein from transposo... 90 1e-29
emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera] 78 2e-29
emb|CAN84102.1| hypothetical protein VITISV_041248 [Vitis vinifera] 84 5e-29
gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subc... 77 1e-28
gb|AAO13467.1| Putative retrovirus-related pol polyprotein [Oryz... 76 2e-28
>gb|PHT53674.1| hypothetical protein CQW23_08136 [Capsicum baccatum]
Length = 707
Score = 125 bits (314), Expect(4) = 5e-45
Identities = 61/130 (46%), Positives = 88/130 (67%), Gaps = 1/130 (0%)
Frame = -2
Query: 451 GQRQEQSAQTSIVDTEAKESCEVLTAESGMEKCSDTWILDSGCTWHMSPRRDWFSTYRVM 272
G++ E+SA+ S V+TE+ C + A ++ + W+LDSGCT+HMSP RDWF+TY
Sbjct: 251 GKQPEKSAEASFVETESDGECFI--ASGTEQRSKNEWVLDSGCTFHMSPNRDWFTTYESF 308
Query: 271 DGGSVLMGNNSVCRIVGIGNILIRSHDXXXXXXXXXXXVPNLK-NLLSLGALEAQGCKFS 95
+GG VLMGN++ C++VG G I I++HD VP+LK NL+SLG LE+QGC++S
Sbjct: 309 NGGLVLMGNDAQCKVVGKGTIKIKTHDGVVRTLTSVRHVPDLKRNLISLGTLESQGCRYS 368
Query: 94 GEDGNITVSR 65
E G + VS+
Sbjct: 369 AEGGVLKVSK 378
Score = 82.0 bits (201), Expect(4) = 5e-45
Identities = 50/118 (42%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Frame = -1
Query: 977 TTAGLWCKLEGLYMTKSLSNKLYMKKQLYGLRMNEGTPILQHLNTFNRIVSD-XXXXXXX 801
T AG+W KLE LYMTKSL+NKL +K++L+ LRM+EGTPI HL FN I+ D
Sbjct: 79 TAAGIWSKLESLYMTKSLANKLRLKERLFTLRMSEGTPIQSHLGEFNSIIIDLENLDVEI 138
Query: 800 XXXXXXXXXXXXLPPSYDHLVQTIMYGKE-TLERENV*TVLQNNELMKRTDVKEEASG 630
LPPSY H + ++YG TL ++V + L + E T + E+SG
Sbjct: 139 DDEDKAVLLIVSLPPSYRHFKEIMLYGNNVTLSFDDVKSNLLSKEKFD-TQIHSESSG 195
Score = 23.9 bits (50), Expect(4) = 5e-45
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 531 CFFCKQRGHIKKDCKAFKEWLKNNPHEDKDK 439
C +CK+R H +C K K N EDK K
Sbjct: 225 CRYCKKRNHEISECYKLKN--KQN-REDKGK 252
Score = 20.8 bits (42), Expect(4) = 5e-45
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 60 IVLLKGERTRNLYRLVGS 7
+VLLK R+ +LY L GS
Sbjct: 381 LVLLKAIRSGSLYLLQGS 398
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 104 bits (259), Expect(3) = 1e-38
Identities = 53/127 (41%), Positives = 81/127 (63%), Gaps = 1/127 (0%)
Frame = -2
Query: 448 QRQEQSAQTSIVDTEAKESCEVLTAESGMEKCSDTWILDSGCTWHMSPRRDWFSTYRVMD 269
++Q SA + DT ++E ++ E SD W+LDSG ++H+ PRR+WF+TY +D
Sbjct: 246 EKQSVSAAVAEEDTNSEEDIALVADEHTHH--SDVWVLDSGASYHICPRREWFTTYEQVD 303
Query: 268 GGSVLMGNNSVCRIVGIGNILIRSHDXXXXXXXXXXXVPNL-KNLLSLGALEAQGCKFSG 92
GGS+ M N+SVC++VG G+I IR+HD VP + KNL+SL L+++G +SG
Sbjct: 304 GGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHVPLMTKNLISLSLLDSKGFSWSG 363
Query: 91 EDGNITV 71
+DG + V
Sbjct: 364 KDGVLRV 370
Score = 79.3 bits (194), Expect(3) = 1e-38
Identities = 47/121 (38%), Positives = 68/121 (56%), Gaps = 4/121 (3%)
Frame = -1
Query: 977 TTAGLWCKLEGLYMTKSLSNKLYMKKQLYGLRMNEGTPILQHLNTFNRIVSD-XXXXXXX 801
T AGLW KLE LYMTKSL+NKL +K++L+GLRM EGT + +HL N ++ +
Sbjct: 77 TAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRMAEGTQLREHLEQLNTLLLELRNIDVKI 136
Query: 800 XXXXXXXXXXXXLPPSYDHLVQTIMYGKETLERENV*TVLQNNELMKR---TDVKEEASG 630
LP S+++ VQ+ + GK+T+ E V + L + EL + T + SG
Sbjct: 137 EDEDAALILLVSLPMSFENFVQSFIVGKDTVSLEEVRSALHSRELRHKANGTSTDIQPSG 196
Query: 629 L 627
L
Sbjct: 197 L 197
Score = 26.6 bits (57), Expect(3) = 1e-38
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -3
Query: 642 GGFRSYRQGDQGEAEKQQWFRKQFREL*R*IQEKGPACFFCKQRGHIKKDCKAFKE 475
G F S R+G + +K + K + C +CK++GH K DC K+
Sbjct: 196 GLFTSSRKGRKNGGKKNKPMSKGAKP--------DDVCNYCKEKGHWKFDCPKKKK 243
>gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 690
Score = 103 bits (257), Expect(4) = 1e-37
Identities = 54/130 (41%), Positives = 79/130 (60%), Gaps = 2/130 (1%)
Frame = -2
Query: 448 QRQEQSAQTS-IVDTEAKESCEVLTAESGMEKCSDTWILDSGCTWHMSPRRDWFSTYRVM 272
+RQE+ + + E +V+ + S ++ WILDSGCT+HM P +D F+T +
Sbjct: 251 ERQEKGKNPAEAANVETDSDGDVMISVSSDKRSKTEWILDSGCTFHMCPYKDLFTTLEPV 310
Query: 271 DGGSVLMGNNSVCRIVGIGNILIRSHDXXXXXXXXXXXVPNLK-NLLSLGALEAQGCKFS 95
D G VLMGN++ C+I GIG I I++HD +P+LK NL+SLG LE+ GCK+S
Sbjct: 311 DSGVVLMGNDTQCKIAGIGTIQIKTHDGTIKTLSNVRFIPDLKRNLISLGTLESLGCKYS 370
Query: 94 GEDGNITVSR 65
E G + VS+
Sbjct: 371 AEGGVLKVSK 380
Score = 75.9 bits (185), Expect(4) = 1e-37
Identities = 48/118 (40%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Frame = -1
Query: 977 TTAGLWCKLEGLYMTKSLSNKLYMKKQLYGLRMNEGTPILQHLNTFNRIVSDXXXXXXXX 798
T A LW KLE LYMTKSL+NKL +K++LY +RM EGTPI HLN FN I+ D
Sbjct: 81 TAAALWLKLESLYMTKSLANKLRLKERLYTIRMVEGTPIQSHLNEFNSIIMDLENIEIKI 140
Query: 797 XXXXXXXXXXXLPPS-YDHLVQTIMY-GKETLERENV*TVLQNNELMKRTDVKEEASG 630
PS Y H + ++Y +TL E+V + L + E D+ E G
Sbjct: 141 DDEDKAVLLIVSLPSTYKHFKEIMLYSNNDTLSFEDVKSNLLSKEKFD-LDIHSEDKG 197
Score = 23.9 bits (50), Expect(4) = 1e-37
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -3
Query: 549 QEKGPACFFCKQRGHIKKDCKAFKEWLKNNPHEDKDKS 436
++ C +CK+ GH DC K K ++K K+
Sbjct: 224 RKSNKTCRYCKKFGHDISDCFILK---KKQERQEKGKN 258
Score = 23.9 bits (50), Expect(4) = 1e-37
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 60 IVLLKGERTRNLYRLVGSVI 1
IVLLK R +LY L GS++
Sbjct: 383 IVLLKANRIGSLYILQGSIV 402
>gb|KYP65226.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 689
Score = 98.2 bits (243), Expect(3) = 2e-37
Identities = 51/121 (42%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Frame = -2
Query: 418 IVDTEAKESCEVLTAESGMEKCSDTWILDSGCTWHMSPRRDWFSTYRVMDGGSVLMGNNS 239
IV E ES E L K WI+DSGC+WHM+PRR WF + G VL+G+N
Sbjct: 245 IVQDEGYESAEALVVSKDNSKLE--WIMDSGCSWHMTPRRSWFENFADQADGLVLLGDNK 302
Query: 238 VCRIVGIGNILIRSHDXXXXXXXXXXXVPNLK-NLLSLGALEAQGCKFSGEDGNITVSRD 62
C+I GIG+I R HD VP+LK NL+SLG + +G F G++G + V ++
Sbjct: 303 PCKIKGIGSIRFRFHDGIERVLADVRYVPDLKRNLISLGEFDKKGYVFQGQEGILNVVKN 362
Query: 61 Y 59
Y
Sbjct: 363 Y 363
Score = 80.9 bits (198), Expect(3) = 2e-37
Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Frame = -1
Query: 977 TTAGLWCKLEGLYMTKSLSNKLYMKKQLYGLRMNEGTPILQHLNTFNRIVSD-XXXXXXX 801
T AG+W KLE LYMTKSL N+LY+K+ LY +MNE P+ + L+ FN+++ D
Sbjct: 57 TAAGIWSKLESLYMTKSLVNRLYLKQSLYSFKMNEDKPVGEQLDQFNKLILDLENIDVTI 116
Query: 800 XXXXXXXXXXXXLPPSYDHLVQTIMYGKETLERENV*TVLQNNELMKRTDVKEEASG 630
LP +Y H +T+++G++++ + V + + EL +R + K +G
Sbjct: 117 DDEDQALLLLCSLPRAYSHFKETMLFGRDSVSIDEVQAAINSKELNERKEKKPTVNG 173
Score = 27.3 bits (59), Expect(3) = 2e-37
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 531 CFFCKQRGHIKKDCKAFKEWLKNNPHEDKDK 439
C+ CK+ GH +K C E L N +++K K
Sbjct: 211 CYHCKKEGHTRKVC---PERLANGGNKEKGK 238
>gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 609
Score = 94.4 bits (233), Expect(3) = 2e-36
Identities = 47/129 (36%), Positives = 73/129 (56%), Gaps = 1/129 (0%)
Frame = -2
Query: 448 QRQEQSAQTSIVDTEAKESCEVLTAESGMEKCSDTWILDSGCTWHMSPRRDWFSTYRVMD 269
+R ++S + + + E+ VL+ + ++ W+LDSGC++HM P R WF TY
Sbjct: 179 KRNQKSVAVAAQEDSSFENELVLSIVDNHQHSAEQWVLDSGCSYHMCPNRSWFLTYEKKS 238
Query: 268 GGSVLMGNNSVCRIVGIGNILIRSHDXXXXXXXXXXXVPNL-KNLLSLGALEAQGCKFSG 92
GG V MGN+ C+ +GIG I I+ HD VP+L KNL+S+G L +G K +
Sbjct: 239 GGDVFMGNDMACKTIGIGTIQIKMHDGVIRTLTEVRHVPDLKKNLISVGVLHTKGFKCNV 298
Query: 91 EDGNITVSR 65
E G + +S+
Sbjct: 299 EGGVMEISK 307
Score = 77.4 bits (189), Expect(3) = 2e-36
Identities = 43/114 (37%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Frame = -1
Query: 977 TTAGLWCKLEGLYMTKSLSNKLYMKKQLYGLRMNEGTPILQHLNTFNRIVSD-XXXXXXX 801
T +GLW KLE LYMTKS+ NKL +K++L+GL M E TP+ HL+ N I+ +
Sbjct: 15 TASGLWLKLEKLYMTKSICNKLLLKRRLFGLHMKEDTPLQDHLDELNSILMELRYIDVKI 74
Query: 800 XXXXXXXXXXXXLPPSYDHLVQTIMYGKETLERENV*TVLQNNELMKRTDVKEE 639
LPPSY+ V ++ GKE + E V + L + EL + E
Sbjct: 75 EDEDAAMILLASLPPSYESFVNSLTVGKECITMEEVKSSLHSRELWFKASANSE 128
Score = 31.2 bits (69), Expect(3) = 2e-36
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -3
Query: 657 DGCQGGGFRSYRQGDQGEAEKQQWFRKQFREL*R*IQEKGPACFFCKQRGHIKKDC 490
+G G G ++ G+ +K+Q +K C +CK+ GH KKDC
Sbjct: 128 EGVNGAGLLAFNSTKNGKKKKEQGKKKTK-------VNPRDICNYCKEPGHWKKDC 176
>gb|KZV56298.1| hypothetical protein F511_00295 [Dorcoceras hygrometricum]
Length = 1309
Score = 85.9 bits (211), Expect(3) = 7e-36
Identities = 44/113 (38%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Frame = -1
Query: 965 LWCKLEGLYMTKSLSNKLYMKKQLYGLRMNEGTPILQHLNTFNRIVSD-XXXXXXXXXXX 789
LW KLE LY+ +SL+N+LY+KK LY + + EG + +H++ FN+I+ D
Sbjct: 83 LWNKLESLYLKRSLANRLYLKKSLYTIHLEEGKDLKKHMDEFNKIILDLKNVDIKITDED 142
Query: 788 XXXXXXXXLPPSYDHLVQTIMYGKETLERENV*TVLQNNELMKRTDVKEEASG 630
LP SY+H V T++YGKETL V + L + EL K+ + K E++G
Sbjct: 143 CAILMLSSLPRSYEHFVDTMLYGKETLTMAEVKSALNSKELHKKNETKMESTG 195
Score = 85.5 bits (210), Expect(3) = 7e-36
Identities = 44/127 (34%), Positives = 74/127 (58%), Gaps = 1/127 (0%)
Frame = -2
Query: 448 QRQEQSAQTSIVDTEAKESCEVLTAESGMEKCSDTWILDSGCTWHMSPRRDWFSTYRVMD 269
+R++ ++V ++ ES EVL ++ D W++DSGC++HM P + WF +
Sbjct: 251 ERRKDPGDAAVV-SDGYESAEVLVVSRTNKQ--DCWVMDSGCSFHMCPIKSWFQNLVEEE 307
Query: 268 GGSVLMGNNSVCRIVGIGNILIRSHDXXXXXXXXXXXVPNL-KNLLSLGALEAQGCKFSG 92
G VL+GNN C+++GIG++L++ HD VP+L +NLLS+G L+++G
Sbjct: 308 SGHVLLGNNRECKVMGIGSVLLKMHDGCVRTITEVRYVPDLRRNLLSIGMLDSKGFNVKI 367
Query: 91 EDGNITV 71
E G + V
Sbjct: 368 EGGTMKV 374
Score = 29.6 bits (65), Expect(3) = 7e-36
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 531 CFFCKQRGHIKKDCKAFKEWLKNNPHEDKD 442
CF C + GH KKDC + NP KD
Sbjct: 229 CFVCHKEGHFKKDC---PDRRARNPERRKD 255
>gb|KHN13665.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Glycine soja]
Length = 337
Score = 85.1 bits (209), Expect(3) = 9e-36
Identities = 38/75 (50%), Positives = 54/75 (72%)
Frame = -2
Query: 415 VDTEAKESCEVLTAESGMEKCSDTWILDSGCTWHMSPRRDWFSTYRVMDGGSVLMGNNSV 236
V + ES EVL+ + +K S+ WILDSGC++HM+P +WFS+Y+ +DGG VLMGNN V
Sbjct: 259 VVADGYESAEVLSIST--KKHSEEWILDSGCSFHMTPNLEWFSSYKEIDGGKVLMGNNMV 316
Query: 235 CRIVGIGNILIRSHD 191
C ++GIG I ++ D
Sbjct: 317 CNVIGIGTIKLKVQD 331
Score = 83.6 bits (205), Expect(3) = 9e-36
Identities = 44/108 (40%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Frame = -1
Query: 977 TTAGLWCKLEGLYMTKSLSNKLYMKKQLYGLRMNEGTPILQHLNTFNRIVSD-XXXXXXX 801
+ AG+W KLE LYMTKSL+NKLY+KK+L+ L+M EG+ I +H++ F + V D
Sbjct: 79 SAAGIWLKLESLYMTKSLTNKLYLKKRLHQLKMEEGSSIKEHVSLFTKAVLDLKSVDVRI 138
Query: 800 XXXXXXXXXXXXLPPSYDHLVQTIMYGKETLERENV*TVLQNNELMKR 657
LP S+++LV T+++G++TL E V L + EL K+
Sbjct: 139 DEEDQAVMLLCSLPSSFENLVDTMLFGRDTLTLEEVKATLNSRELKKK 186
Score = 32.0 bits (71), Expect(3) = 9e-36
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3
Query: 534 ACFFCKQRGHIKKDCKAFKEWLKNN 460
AC++CK+ GH +K+C K+ KNN
Sbjct: 226 ACYYCKKEGHFRKECPERKK--KNN 248
>gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 593
Score = 88.6 bits (218), Expect(3) = 1e-34
Identities = 45/129 (34%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
Frame = -2
Query: 448 QRQEQSAQTSIVDTEAKESCEVLTAESGMEKCSDTWILDSGCTWHMSPRRDWFSTYRVMD 269
+R ++S + + + E+ VL+ + + W+LDSGC++HM P R WF TY
Sbjct: 231 KRNQKSVVVAAQEDSSFENELVLSIVDNHQHFVEQWVLDSGCSYHMCPNRSWFLTYEKKF 290
Query: 268 GGSVLMGNNSVCRIVGIGNILIRSHDXXXXXXXXXXXVPNL-KNLLSLGALEAQGCKFSG 92
GG V MGN+ C+ + IG I I+ HD VP+L KNL+S+G L+ +G K +
Sbjct: 291 GGDVFMGNDMACKTISIGTIQIKMHDGVIRTLTEVRHVPDLKKNLISVGVLDTKGFKCNV 350
Query: 91 EDGNITVSR 65
E G + +++
Sbjct: 351 EGGVMEINK 359
Score = 77.4 bits (189), Expect(3) = 1e-34
Identities = 43/114 (37%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Frame = -1
Query: 977 TTAGLWCKLEGLYMTKSLSNKLYMKKQLYGLRMNEGTPILQHLNTFNRIVSD-XXXXXXX 801
T +GLW KLE LYMTKS+ NKL +K++L+GL M E TP+ HL+ N I+ +
Sbjct: 67 TASGLWLKLEKLYMTKSICNKLLLKRRLFGLHMKEDTPLQDHLDELNSILMELRDINVKI 126
Query: 800 XXXXXXXXXXXXLPPSYDHLVQTIMYGKETLERENV*TVLQNNELMKRTDVKEE 639
LPPSY+ V ++ GKE + E V + L + EL + E
Sbjct: 127 EDEDAAMILLASLPPSYESFVNSLSVGKECITMEEVKSSLHSRELRFKASANSE 180
Score = 31.2 bits (69), Expect(3) = 1e-34
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -3
Query: 657 DGCQGGGFRSYRQGDQGEAEKQQWFRKQFREL*R*IQEKGPACFFCKQRGHIKKDC 490
+G G G ++ G+ +K+Q +K C +CK+ GH KKDC
Sbjct: 180 EGVNGAGLLAFNSTTNGKKKKEQGKKKTK-------VNPRDICNYCKEPGHWKKDC 228
>gb|PNX96445.1| copia LTR rider [Trifolium pratense]
Length = 1318
Score = 92.4 bits (228), Expect(3) = 8e-34
Identities = 48/112 (42%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Frame = -2
Query: 397 ESCEVLTAESGMEKCSDTWILDSGCTWHMSPRRDWFSTYRVMDGGSVLMGNNSVCRIVGI 218
ES +VL S + WI+DSGCTWHM+P +D F DGGSVL+GNN C+I G+
Sbjct: 266 ESSDVLVVSSSDSR--KEWIMDSGCTWHMTPNKDLFEELCDQDGGSVLLGNNKACKIAGV 323
Query: 217 GNILIRSHDXXXXXXXXXXXVPNLK-NLLSLGALEAQGCKFSGEDGNITVSR 65
G++ + HD VP+LK NLLSLG + +G F GE + V +
Sbjct: 324 GSVRFKLHDESIRLLTEVRYVPDLKRNLLSLGEFDKKGYVFQGEKSILRVMK 375
Score = 76.3 bits (186), Expect(3) = 8e-34
Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Frame = -1
Query: 977 TTAGLWCKLEGLYMTKSLSNKLYMKKQLYGLRMNEGTPILQHLNTFNRIVSD-XXXXXXX 801
T +GLW KLE LYMTKSL N+LY+K+ LY +M E + + L+ FN+++ D
Sbjct: 80 TASGLWAKLESLYMTKSLVNRLYLKQALYSFKMVEDKVLAEQLDMFNKLILDLENIDVKI 139
Query: 800 XXXXXXXXXXXXLPPSYDHLVQTIMYGKETLERENV*TVLQNNELMKRTDVKEEASG 630
LP S+ H +T++YG+E+L E V + L + +L +R + K G
Sbjct: 140 DDEDQALLLLCALPRSHAHFKETLLYGRESLTFEEVQSALYSKDLNERKEHKPSTVG 196
Score = 25.4 bits (54), Expect(3) = 8e-34
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 540 GPACFFCKQRGHIKKDC 490
G C+ CK+ GH +K C
Sbjct: 229 GIRCYHCKKEGHTRKVC 245
>gb|KYP36635.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 364
Score = 83.6 bits (205), Expect(3) = 1e-33
Identities = 45/116 (38%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Frame = -1
Query: 977 TTAGLWCKLEGLYMTKSLSNKLYMKKQLYGLRMNEGTPILQHLNTFNRIVSD-XXXXXXX 801
T +GLWCKLE LYMTKS+ NKL +K++L+GL M EGTP+ HL+ N ++ +
Sbjct: 91 TASGLWCKLEKLYMTKSICNKLLLKRRLFGLHMKEGTPLKDHLDELNSVLMELRDIDVKI 150
Query: 800 XXXXXXXXXXXXLPPSYDHLVQTIMYGKETLERENV*TVLQNNELMKRTDVKEEAS 633
LPPSY+ V ++ GKE + E V + L + E R E S
Sbjct: 151 EDEDAAMILLASLPPSYESFVNSLSVGKECITMEEVKSSLHSREFRLRASGNSEES 206
Score = 82.4 bits (202), Expect(3) = 1e-33
Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Frame = -2
Query: 385 VLTAESGMEKCSDTWILDSGCTWHMSPRRDWFSTYRVMDGGSVLMGNNSVCRIVGIGNIL 206
VL+ + D WILDSGC++HM P R WF TY GG+V MGN++ C+ +GIG I
Sbjct: 275 VLSIADQPQHSEDQWILDSGCSFHMCPNRTWFDTYEKKSGGNVFMGNDAPCKTIGIGTIK 334
Query: 205 IRSHDXXXXXXXXXXXVPNL-KNLLSLG 125
I+ HD VP L KNL+S+G
Sbjct: 335 IKMHDGITRTLTEVRHVPELKKNLISVG 362
Score = 27.3 bits (59), Expect(3) = 1e-33
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3
Query: 531 CFFCKQRGHIKKDC 490
C +CK+ GH KKDC
Sbjct: 239 CNYCKEPGHWKKDC 252
>gb|OTG30017.1| putative zinc finger, CCHC-type [Helianthus annuus]
Length = 1308
Score = 91.3 bits (225), Expect(3) = 1e-32
Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 2/120 (1%)
Frame = -1
Query: 977 TTAGLWCKLEGLYMTKSLSNKLYMKKQLYGLRMNEGTPILQHLNTFNRIVSD-XXXXXXX 801
+ AG+W KLE LYMTKSL+N+LY+KK+LY ++ G + H + FN+++ D
Sbjct: 80 SAAGIWAKLESLYMTKSLANRLYLKKRLYTFQLASGKSLEDHTDEFNKVILDLENIDVSI 139
Query: 800 XXXXXXXXXXXXLPPSYDHLVQTIMYGKETLERENV*TVLQNNELMKRTDVKEE-ASGLI 624
LP +++H V T+MYG+++L E V L + EL KR+D KEE GL+
Sbjct: 140 DDEDKAIIFLASLPQTFEHFVDTLMYGRDSLSMEEVLAALNSKELKKRSDAKEEIGEGLV 199
Score = 75.1 bits (183), Expect(3) = 1e-32
Identities = 37/110 (33%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Frame = -2
Query: 397 ESCEVLTAESGMEKCSDTWILDSGCTWHMSPRRDWFSTYRVMDGGSVLMGNNSVCRIVGI 218
ES +VL G + D WILDSG ++HM+P R++F + D G+V +G++ CR+ G
Sbjct: 267 ESADVLVVSKGNQ--DDNWILDSGGSYHMTPHREYFQDIEMQDMGTVKLGDDRTCRVQGQ 324
Query: 217 GNILIRSHDXXXXXXXXXXXVPNL-KNLLSLGALEAQGCKFSGEDGNITV 71
G ++I+ + +P L +N++SLG E +GC S ++G +
Sbjct: 325 GTVVIKLENGTELKLVNVRFIPELTRNIISLGIFEKEGCSVSLKNGKAKI 374
Score = 23.5 bits (49), Expect(3) = 1e-32
Identities = 6/14 (42%), Positives = 8/14 (57%)
Frame = -3
Query: 531 CFFCKQRGHIKKDC 490
C+ C H K+DC
Sbjct: 225 CYICNSEKHFKRDC 238
>gb|KYP37021.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 352
Score = 83.6 bits (205), Expect(3) = 7e-32
Identities = 45/116 (38%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Frame = -1
Query: 977 TTAGLWCKLEGLYMTKSLSNKLYMKKQLYGLRMNEGTPILQHLNTFNRIVSD-XXXXXXX 801
T +GLWCKLE LYMTKS+ NKL +K++L+GL M EGTP+ HL+ N ++ +
Sbjct: 91 TASGLWCKLEKLYMTKSICNKLLLKRRLFGLHMKEGTPLKDHLDELNSVLMELRDIDVKI 150
Query: 800 XXXXXXXXXXXXLPPSYDHLVQTIMYGKETLERENV*TVLQNNELMKRTDVKEEAS 633
LPPSY+ V ++ GKE + E V + L + E R E S
Sbjct: 151 EDEDAAMILLAYLPPSYESFVNSLSVGKECITMEEVKSSLHSREFRLRASGNSEES 206
Score = 76.6 bits (187), Expect(3) = 7e-32
Identities = 32/65 (49%), Positives = 42/65 (64%)
Frame = -2
Query: 385 VLTAESGMEKCSDTWILDSGCTWHMSPRRDWFSTYRVMDGGSVLMGNNSVCRIVGIGNIL 206
VL+ + D WILDSGC++HM P R WF TY GG+V MGN++ C+ +GIG I
Sbjct: 275 VLSIADQPQHSEDQWILDSGCSFHMCPNRTWFDTYEKKSGGNVFMGNDAPCKTIGIGTIK 334
Query: 205 IRSHD 191
I+ HD
Sbjct: 335 IKMHD 339
Score = 27.3 bits (59), Expect(3) = 7e-32
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3
Query: 531 CFFCKQRGHIKKDC 490
C +CK+ GH KKDC
Sbjct: 239 CNYCKEPGHWKKDC 252
>emb|CDP17738.1| unnamed protein product [Coffea canephora]
Length = 798
Score = 93.6 bits (231), Expect(4) = 1e-31
Identities = 47/119 (39%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
Frame = -2
Query: 421 SIVDTEAKESCEVLTAESGMEKCSDTWILDSGCTWHMSPRRDWFSTYRVMDGGSVLMGNN 242
++ + ++ + A S + D WILDS CT+HM+P R+WF + +DGG V MGN+
Sbjct: 283 NVAECKSDAESDFSLAVSRLTSHPDEWILDSTCTYHMTPMREWFFEFEELDGGFVYMGND 342
Query: 241 SVCRIVGIGNILIRSHDXXXXXXXXXXXVPNLK-NLLSLGALEAQGCKFSGEDGNITVS 68
+ C+ VGIG+I +R+HD VPNLK +L+SLG LE++G + DG + V+
Sbjct: 343 NPCKTVGIGSIKLRNHDGSTRILKDVRYVPNLKRSLISLGLLESKGLEVRMRDGILKVT 401
Score = 59.3 bits (142), Expect(4) = 1e-31
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Frame = -1
Query: 965 LWCKLEGLYMTKSLSNKLYMKKQLYGLRMNEGTPILQHLNTFNRIVSD-XXXXXXXXXXX 789
LW LEG ++ KS NKL MKK L+ GT + +H+ FN++V+D
Sbjct: 111 LWKALEGKFLKKSGQNKLLMKKILFRFDYQPGTTMNEHITIFNQLVADLLNLDVNFEDED 170
Query: 788 XXXXXXXXLPPSYDHLVQTIMYGKETLERENV*TVLQNNELMKRTDVKEEAS 633
LP ++HL T+++GKE + + V + L + EL K+ K++ +
Sbjct: 171 LALMLLSSLPDEFEHLETTLLHGKENVSLDAVCSALYSRELRKQDKKKKKVA 222
Score = 30.8 bits (68), Expect(4) = 1e-31
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 531 CFFCKQRGHIKKDCKAFKE 475
C FC+++GH KKDC K+
Sbjct: 256 CAFCREKGHWKKDCPKLKK 274
Score = 22.7 bits (47), Expect(4) = 1e-31
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 60 IVLLKGERTRNLYRLVGSVI 1
+++LKG R NLY GS +
Sbjct: 405 LLMLKGVRKNNLYYYQGSTV 424
>gb|PON41343.1| Zinc finger, CCHC-type [Parasponia andersonii]
Length = 297
Score = 95.9 bits (237), Expect(3) = 9e-31
Identities = 50/118 (42%), Positives = 67/118 (56%), Gaps = 1/118 (0%)
Frame = -2
Query: 415 VDTEAKESCEVLTAESGMEKCSDTWILDSGCTWHMSPRRDWFSTYRVMDGGSVLMGNNSV 236
V ++ +S EVL E S WI+DSGC++HM P + WF DGGSVL+GNN
Sbjct: 168 VASDGYDSAEVLVVTD--EDSSKEWIMDSGCSFHMCPTKSWFENLEKTDGGSVLLGNNKP 225
Query: 235 CRIVGIGNILIRSHDXXXXXXXXXXXVPNLK-NLLSLGALEAQGCKFSGEDGNITVSR 65
C++ GIG++ IR D VP LK NL+SLG L+ G F E G++ VS+
Sbjct: 226 CKVAGIGSVRIRMFDGMERILQQVRYVPELKRNLISLGMLDMNGYSFKAEHGSLKVSK 283
Score = 57.8 bits (138), Expect(3) = 9e-31
Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Frame = -1
Query: 938 MTKSLSNKLYMKKQLYGLRMNEGTPILQHLNTFNRIVSD-XXXXXXXXXXXXXXXXXXXL 762
MTKSL+N+L+MK++L+ +MNE I ++ FN+I+ D L
Sbjct: 1 MTKSLANRLHMKQRLHSFKMNEEKSISDQIDKFNKIIDDLENIEIKLEDEDKALILLNAL 60
Query: 761 PPSYDHLVQTIMYGKE-TLERENV*TVLQNNELMKRTDVKEEASG 630
P +Y+H ++YG+E T+ + V + ++ EL ++ + KEE +G
Sbjct: 61 PKAYEHFKDAMLYGREQTITLDEVQSAVKAKELPRKKEGKEENTG 105
Score = 30.0 bits (66), Expect(3) = 9e-31
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 531 CFFCKQRGHIKKDCKAFKEWLKNNPHEDKDKS 436
CF C + GH K+DC K+ + P + + S
Sbjct: 136 CFHCHKEGHFKRDCPDRKKKVHEKPKDPGEAS 167
>gb|OMO83367.1| Integrase, catalytic core [Corchorus capsularis]
Length = 785
Score = 77.0 bits (188), Expect(3) = 1e-29
Identities = 43/121 (35%), Positives = 75/121 (61%), Gaps = 1/121 (0%)
Frame = -2
Query: 424 TSIVDTEAKE-SCEVLTAESGMEKCSDTWILDSGCTWHMSPRRDWFSTYRVMDGGSVLMG 248
+S+V+T E +VLT + ++TW+LD+ ++HM+ R+ F+T++ +G SV++G
Sbjct: 244 SSLVETSDDEVGTDVLTVST--TGSANTWVLDTSASYHMTFSRNLFTTFKEWNG-SVMLG 300
Query: 247 NNSVCRIVGIGNILIRSHDXXXXXXXXXXXVPNLKNLLSLGALEAQGCKFSGEDGNITVS 68
+ + + G G++ I++HD P L+NL+SLG L+ QG K+SGE+G I VS
Sbjct: 301 DKTTLTVKGSGSVQIKTHDGTIRTFDAWLV-PELRNLISLGTLDKQGYKYSGENGQIKVS 359
Query: 67 R 65
+
Sbjct: 360 K 360
Score = 70.5 bits (171), Expect(3) = 1e-29
Identities = 45/120 (37%), Positives = 66/120 (55%), Gaps = 3/120 (2%)
Frame = -1
Query: 974 TAGLWCKLEGLYMTKSLSNKLYMKKQLYGLRMNEGTPILQHLNTFNRIVSD-XXXXXXXX 798
TA LW L+ YM KSL+N+L+ K++LY +M E TPI HL++FNRI+ D
Sbjct: 57 TASLWKALDDKYMKKSLANRLFQKQRLYTFKMVENTPIKDHLDSFNRIILDLGGVRVKIE 116
Query: 797 XXXXXXXXXXXLPPSYDHLVQTIMYGKETLERENV*TVLQNNELMKR--TDVKEEASGLI 624
LP S+ + T++YG++T+ ++V L + EL + DV EA GLI
Sbjct: 117 DEDLALILLFSLPRSFQNFRDTMLYGRDTIALKDVKDALLSKELQNKVSADVDGEA-GLI 175
Score = 32.7 bits (73), Expect(3) = 1e-29
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 531 CFFCKQRGHIKKDCKAFKEWLKNNPHEDKDKSKV 430
CF+C ++GH++KDC K+ + E K+ V
Sbjct: 204 CFYCNEKGHLRKDCPDRKKGNSSEKMESNVKAMV 237
>gb|KYP46255.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 507
Score = 90.1 bits (222), Expect(3) = 1e-29
Identities = 45/121 (37%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Frame = -2
Query: 448 QRQEQSAQTSIVDTEAKESCEVLTAESGMEKCSDTWILDSGCTWHMSPRRDWFSTYRVMD 269
+R ++S + + + E+ VL+ + ++ W+LDSGC++HM P R WF TY
Sbjct: 152 KRNQKSVAVAAQEDSSFENELVLSIVDNHQHSAEQWVLDSGCSYHMCPNRSWFLTYEKKS 211
Query: 268 GGSVLMGNNSVCRIVGIGNILIRSHDXXXXXXXXXXXVPNL-KNLLSLGALEAQGCKFSG 92
GG V MGN+ C+ +GIG I I+ HD VP+L KNL+S+G L +G K +
Sbjct: 212 GGDVFMGNDMACKTIGIGTIQIKMHDGVIRTLTEVRHVPDLKKNLISVGVLHTKGFKCNV 271
Query: 91 E 89
E
Sbjct: 272 E 272
Score = 58.5 bits (140), Expect(3) = 1e-29
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Frame = -1
Query: 938 MTKSLSNKLYMKKQLYGLRMNEGTPILQHLNTFNRIVSD-XXXXXXXXXXXXXXXXXXXL 762
MTKS+ NKL +K++L+GL M E TP+ HL+ N I+ + L
Sbjct: 1 MTKSICNKLLLKRRLFGLHMKEDTPLQDHLDELNSILMELRYIDVKIEDEDAAMILLASL 60
Query: 761 PPSYDHLVQTIMYGKETLERENV*TVLQNNELMKRTDVKEE 639
PPSY+ V ++ GKE + E V + L + EL + E
Sbjct: 61 PPSYESFVNSLTVGKECITMEEVKSSLHSRELWFKASANSE 101
Score = 31.2 bits (69), Expect(3) = 1e-29
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -3
Query: 657 DGCQGGGFRSYRQGDQGEAEKQQWFRKQFREL*R*IQEKGPACFFCKQRGHIKKDC 490
+G G G ++ G+ +K+Q +K C +CK+ GH KKDC
Sbjct: 101 EGVNGAGLLAFNSTKNGKKKKEQGKKKTK-------VNPRDICNYCKEPGHWKKDC 149
>emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera]
Length = 947
Score = 78.2 bits (191), Expect(3) = 2e-29
Identities = 41/108 (37%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Frame = -2
Query: 385 VLTAESGMEKCSDTWILDSGCTWHMSPRRDWFSTYRVMDGGSVLMGNNSVCRIVGIGNIL 206
V +SG E WILDSGC++HM P + WF ++ +GG VL+GNN C+I+G +
Sbjct: 316 VAEMDSGKE-----WILDSGCSFHMCPIKAWFEDFKEANGGHVLLGNNKHCKILGTSIVR 370
Query: 205 IRSHDXXXXXXXXXXXVPNLK-NLLSLGALEAQGCKFSGEDGNITVSR 65
I+ +D +P LK NL+SLG L+ G F + ++ V+R
Sbjct: 371 IKHYDGIERVLEVVRYIPELKRNLISLGMLDKLGYTFKSKPNSLRVAR 418
Score = 72.0 bits (175), Expect(3) = 2e-29
Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Frame = -1
Query: 974 TAGLWCKLEGLYMTKSLSNKLYMKKQLYGLRMNEGTPILQHLNTFNRIVSD-XXXXXXXX 798
TA LW KLE LYMTKSL+N+L+ K +LY ++ G I +H + FN+I+ D
Sbjct: 125 TAELWLKLESLYMTKSLANRLHKKIKLYTFKITPGMSIEEHFDHFNKIILDLENIDITVS 184
Query: 797 XXXXXXXXXXXLPPSYDHLVQTIMYGKETLERENV*TVLQNNELMKRTDVKEEA 636
L SY ++ + IMYG++++ + V ++L EL K+ + K+E+
Sbjct: 185 NEDKAILLLTSLDASYTNMKEAIMYGRDSMTFDEVQSILHPRELQKQEESKDES 238
Score = 28.9 bits (63), Expect(3) = 2e-29
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 531 CFFCKQRGHIKKDC 490
CF C + GH KKDC
Sbjct: 271 CFICHKEGHFKKDC 284
>emb|CAN84102.1| hypothetical protein VITISV_041248 [Vitis vinifera]
Length = 894
Score = 83.6 bits (205), Expect(3) = 5e-29
Identities = 43/108 (39%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Frame = -2
Query: 385 VLTAESGMEKCSDTWILDSGCTWHMSPRRDWFSTYRVMDGGSVLMGNNSVCRIVGIGNIL 206
V +SG E WILDSGC++HM P + WF ++ +GG VL+GNN C+I+G G +
Sbjct: 273 VAEVDSGKE-----WILDSGCSFHMCPIKAWFEDFKEANGGHVLLGNNKHCKILGTGTVK 327
Query: 205 IRSHDXXXXXXXXXXXVPNLK-NLLSLGALEAQGCKFSGEDGNITVSR 65
I+ +D +P LK NL+SLG L+ G F E ++ V+R
Sbjct: 328 IKHYDGIERVLEDIRYIPELKMNLISLGMLDKLGYTFKSEPNSLRVAR 375
Score = 63.9 bits (154), Expect(3) = 5e-29
Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Frame = -1
Query: 977 TTAGLWCKLEGLYMTKSLSNKLYMKKQLYGLRMNEGTPILQHLNTFNRIVSD-XXXXXXX 801
+ A L KLE LYMTKSL+N+L+ +LY +M I +HL+ FN+I+ D
Sbjct: 80 SAAKLLLKLESLYMTKSLANRLHKXIKLYTFKMTPSMSIEEHLDHFNKIILDLKNIDIAV 139
Query: 800 XXXXXXXXXXXXLPPSYDHLVQTIMYGKETLERENV*TVLQNNELMKRTDVKEE 639
L SY ++ + IMYG++ L + V ++L EL K+ + KEE
Sbjct: 140 SNEDKAILLLTSLDASYTNMKEAIMYGRDILTFDEVQSILHARELHKQEESKEE 193
Score = 30.4 bits (67), Expect(3) = 5e-29
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 531 CFFCKQRGHIKKDCKAFKEWLKNNPHEDKDKSKVL 427
CF C + GH KKDC ++ + D + +L
Sbjct: 228 CFICHKEGHFKKDCPDMRQNTXKKTMNEGDATMIL 262
>gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 424
Score = 77.0 bits (188), Expect(3) = 1e-28
Identities = 41/116 (35%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Frame = -1
Query: 977 TTAGLWCKLEGLYMTKSLSNKLYMKKQLYGLRMNEGTPILQHLNTFNRIVSD-XXXXXXX 801
T+ +W KL LYM+KSL++KLY+K+QLYGL+M E + + +H++ FN++V D
Sbjct: 81 TSKEIWVKLTSLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDVFNQLVVDLSKLDVKL 140
Query: 800 XXXXXXXXXXXXLPPSYDHLVQTIMYGKETLERENV*TVLQNNELMKRTDVKEEAS 633
LPPSY+H+V + +GK+T++ E + ++L + + + EAS
Sbjct: 141 DDEDKAIILLCSLPPSYEHVVTILTHGKDTIKTEIISSLLARDLRRSKKNEAMEAS 196
Score = 69.3 bits (168), Expect(3) = 1e-28
Identities = 37/116 (31%), Positives = 66/116 (56%), Gaps = 1/116 (0%)
Frame = -2
Query: 412 DTEAKESCEVLTAESGMEKCSDTWILDSGCTWHMSPRRDWFSTYRVMDGGSVLMGNNSVC 233
D S E+LT + EK + W+LDS ++H++ +R+WFS+Y+ D G V +G+++
Sbjct: 254 DDSDSSSHEILTVSN--EKSGEAWMLDSASSYHVTSKREWFSSYKSGDFGVVYLGDDTSY 311
Query: 232 RIVGIGNILIRSHDXXXXXXXXXXXVPNL-KNLLSLGALEAQGCKFSGEDGNITVS 68
R+VG+G++ + +D VP L K+L+SLG+L G + + T++
Sbjct: 312 RVVGVGDVKFKMYDGNEVLLSDVRHVPGLRKSLISLGSLHEIGWLYQVDSDRKTMN 367
Score = 30.4 bits (67), Expect(3) = 1e-28
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 549 QEKGPACFFCKQRGHIKKDCKAFKE 475
+EKG C+ C + GHI+++C K+
Sbjct: 217 KEKGARCYKCHEFGHIRRNCPLLKK 241
>gb|AAO13467.1| Putative retrovirus-related pol polyprotein [Oryza sativa Japonica
Group]
gb|ABF94286.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 556
Score = 76.3 bits (186), Expect(3) = 2e-28
Identities = 43/115 (37%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Frame = -1
Query: 977 TTAGLWCKLEGLYMTKSLSNKLYMKKQLYGLRMNEGTPILQHLNTFNRIVSD-XXXXXXX 801
T +W KL LYM+KSL++KLY+K+QLYGL+M E + + +H++ FN++V D
Sbjct: 212 TPKEIWDKLASLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDVFNQLVVDLSKLDVKL 271
Query: 800 XXXXXXXXXXXXLPPSYDHLVQTIMYGKETLERENV*TVLQNNELMKRTDVKEEA 636
LPPS++H+V T+ +GK+T++ E + + L +L R K EA
Sbjct: 272 DDEDKAIILLCSLPPSFEHVVTTLTHGKDTVKTEEIISSLLARDL--RRSKKNEA 324
Score = 69.3 bits (168), Expect(3) = 2e-28
Identities = 37/116 (31%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Frame = -2
Query: 412 DTEAKESCEVLTAESGMEKCSDTWILDSGCTWHMSPRRDWFSTYRVMDGGSVLMGNNSVC 233
D S E+LT + EK + W+LDS ++H++ + +WFS+Y+ D G V +GN++
Sbjct: 386 DNSDSSSHEILTVSN--EKSGEAWMLDSASSYHVTSKWEWFSSYKSGDFGVVYLGNDTSY 443
Query: 232 RIVGIGNILIRSHDXXXXXXXXXXXVPNL-KNLLSLGALEAQGCKFSGEDGNITVS 68
R++G+G+I + +D VP L K+L+SLG+L G + + T++
Sbjct: 444 RVIGVGDIKFKMYDGNEVLLSDVRHVPGLRKSLISLGSLHETGWLYQVDSDRKTMN 499
Score = 30.4 bits (67), Expect(3) = 2e-28
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 549 QEKGPACFFCKQRGHIKKDCKAFKE 475
+EKG C+ C + GHI+++C K+
Sbjct: 349 KEKGARCYKCHEFGHIRRNCPLLKK 373