BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon23_contig00026174
         (387 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ONK78853.1| uncharacterized protein A4U43_C01F240 [Asparagus ...    86   6e-17
ref|XP_020251395.1| DNA-directed RNA polymerase 3B, chloroplasti...    86   7e-17
gb|PKU65337.1| DNA-directed RNA polymerase 3, chloroplastic [Den...    76   2e-13
ref|XP_020699294.1| DNA-directed RNA polymerase 3B, chloroplasti...    76   2e-13
ref|XP_020699293.1| DNA-directed RNA polymerase 3, chloroplastic...    76   2e-13
ref|XP_009400360.1| PREDICTED: DNA-directed RNA polymerase 3B, c...    74   1e-12
ref|XP_018683779.1| PREDICTED: DNA-directed RNA polymerase 3B, c...    74   1e-12
gb|PKA50864.1| DNA-directed RNA polymerase 3, chloroplastic [Apo...    74   1e-12
ref|XP_020597755.1| DNA-directed RNA polymerase 3, chloroplastic...    69   6e-11
ref|XP_020109600.1| DNA-directed RNA polymerase 3B, chloroplasti...    67   3e-10
ref|XP_010904634.1| PREDICTED: DNA-directed RNA polymerase 3B, c...    65   2e-09
ref|XP_010904633.1| PREDICTED: DNA-directed RNA polymerase 3B, c...    65   2e-09
gb|OAY70002.1| DNA-directed RNA polymerase 3, chloroplastic [Ana...    65   2e-09
ref|XP_017702071.1| PREDICTED: DNA-directed RNA polymerase 3B, c...    63   6e-09
ref|XP_010273707.1| PREDICTED: DNA-directed RNA polymerase 3, ch...    62   1e-08
ref|XP_010273705.1| PREDICTED: DNA-directed RNA polymerase 3, ch...    62   1e-08
ref|XP_016750005.1| PREDICTED: DNA-directed RNA polymerase 3, ch...    59   2e-07
ref|XP_017615868.1| PREDICTED: DNA-directed RNA polymerase 3, ch...    59   2e-07
gb|KHG29144.1| DNA-directed RNA polymerase 3, chloroplastic -lik...    59   2e-07
gb|PPD74699.1| hypothetical protein GOBAR_DD28392 [Gossypium bar...    58   3e-07

>gb|ONK78853.1| uncharacterized protein A4U43_C01F240 [Asparagus officinalis]
          Length = 775

 Score = 85.9 bits (211), Expect = 6e-17
 Identities = 51/90 (56%), Positives = 63/90 (70%), Gaps = 9/90 (10%)
 Frame = -3

Query: 295 EMLVKIYSFLGKI---RRNNEVDKNVVFSKEQEI----KRKHVLKSVKMKKLAAVQKLLK 137
           E  VKI+SFL K    RRN +VD+N V ++EQEI    KRK V+K+VKMK+L  V+KLLK
Sbjct: 91  EQEVKIHSFLEKTKKSRRNKQVDENAVLTREQEIEQEIKRKRVVKAVKMKRLIKVEKLLK 150

Query: 136 NENNMEPWGRDAQANV--FVIYLHTHSAFI 53
           NEN  EPWGRDAQA +   +I L   SAF+
Sbjct: 151 NENGTEPWGRDAQAKLGSRLIELLIDSAFV 180


>ref|XP_020251395.1| DNA-directed RNA polymerase 3B, chloroplastic-like [Asparagus
           officinalis]
          Length = 989

 Score = 85.9 bits (211), Expect = 7e-17
 Identities = 51/90 (56%), Positives = 63/90 (70%), Gaps = 9/90 (10%)
 Frame = -3

Query: 295 EMLVKIYSFLGKI---RRNNEVDKNVVFSKEQEI----KRKHVLKSVKMKKLAAVQKLLK 137
           E  VKI+SFL K    RRN +VD+N V ++EQEI    KRK V+K+VKMK+L  V+KLLK
Sbjct: 272 EQEVKIHSFLEKTKKSRRNKQVDENAVLTREQEIEQEIKRKRVVKAVKMKRLIKVEKLLK 331

Query: 136 NENNMEPWGRDAQANV--FVIYLHTHSAFI 53
           NEN  EPWGRDAQA +   +I L   SAF+
Sbjct: 332 NENGTEPWGRDAQAKLGSRLIELLIDSAFV 361


>gb|PKU65337.1| DNA-directed RNA polymerase 3, chloroplastic [Dendrobium catenatum]
          Length = 794

 Score = 75.9 bits (185), Expect = 2e-13
 Identities = 41/81 (50%), Positives = 59/81 (72%), Gaps = 3/81 (3%)
 Frame = -3

Query: 286 VKIYSFLGKIR-RNNEVDKNVVFSKEQEIKRKHVLKSVKMKKLAAVQKLLKNENNMEPWG 110
           V+I+ ++ K + R N V ++++F+KEQ+ +RK V+K +KMKKL  VQKLLK E +MEPWG
Sbjct: 273 VRIHGYVEKTKKRGNRVCQDIIFTKEQQKRRKLVMKLIKMKKLVDVQKLLKEEIHMEPWG 332

Query: 109 RDAQANV--FVIYLHTHSAFI 53
           RDAQA +   +I L   SAF+
Sbjct: 333 RDAQAKLGTRLIELLIESAFV 353


>ref|XP_020699294.1| DNA-directed RNA polymerase 3B, chloroplastic-like isoform X2
           [Dendrobium catenatum]
          Length = 794

 Score = 75.9 bits (185), Expect = 2e-13
 Identities = 41/81 (50%), Positives = 59/81 (72%), Gaps = 3/81 (3%)
 Frame = -3

Query: 286 VKIYSFLGKIR-RNNEVDKNVVFSKEQEIKRKHVLKSVKMKKLAAVQKLLKNENNMEPWG 110
           V+I+ ++ K + R N V ++++F+KEQ+ +RK V+K +KMKKL  VQKLLK E +MEPWG
Sbjct: 273 VRIHGYVEKTKKRGNRVCQDIIFTKEQQKRRKLVMKLIKMKKLVDVQKLLKEEIHMEPWG 332

Query: 109 RDAQANV--FVIYLHTHSAFI 53
           RDAQA +   +I L   SAF+
Sbjct: 333 RDAQAKLGTRLIELLIESAFV 353


>ref|XP_020699293.1| DNA-directed RNA polymerase 3, chloroplastic-like isoform X1
           [Dendrobium catenatum]
          Length = 985

 Score = 75.9 bits (185), Expect = 2e-13
 Identities = 41/81 (50%), Positives = 59/81 (72%), Gaps = 3/81 (3%)
 Frame = -3

Query: 286 VKIYSFLGKIR-RNNEVDKNVVFSKEQEIKRKHVLKSVKMKKLAAVQKLLKNENNMEPWG 110
           V+I+ ++ K + R N V ++++F+KEQ+ +RK V+K +KMKKL  VQKLLK E +MEPWG
Sbjct: 273 VRIHGYVEKTKKRGNRVCQDIIFTKEQQKRRKLVMKLIKMKKLVDVQKLLKEEIHMEPWG 332

Query: 109 RDAQANV--FVIYLHTHSAFI 53
           RDAQA +   +I L   SAF+
Sbjct: 333 RDAQAKLGTRLIELLIESAFV 353


>ref|XP_009400360.1| PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic isoform X2
           [Musa acuminata subsp. malaccensis]
          Length = 809

 Score = 73.9 bits (180), Expect = 1e-12
 Identities = 44/87 (50%), Positives = 55/87 (63%), Gaps = 6/87 (6%)
 Frame = -3

Query: 295 EMLVKIYSFLGKI----RRNNEVDKNVVFSKEQEIKRKHVLKSVKMKKLAAVQKLLKNEN 128
           E   KI ++L K     RR NE D+NV+   +QEI RK V+K +KMKKL  VQKLL+NE 
Sbjct: 91  EQEFKIQAYLEKSKRPRRRKNEGDRNVILCTQQEILRKKVMKLIKMKKLIEVQKLLRNEI 150

Query: 127 NMEPWGRDAQANV--FVIYLHTHSAFI 53
            ME WGRD QA +   +I L   SAF+
Sbjct: 151 EMESWGRDGQAKLGSRLIELLLESAFV 177


>ref|XP_018683779.1| PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic isoform X1
           [Musa acuminata subsp. malaccensis]
          Length = 810

 Score = 73.9 bits (180), Expect = 1e-12
 Identities = 44/87 (50%), Positives = 55/87 (63%), Gaps = 6/87 (6%)
 Frame = -3

Query: 295 EMLVKIYSFLGKI----RRNNEVDKNVVFSKEQEIKRKHVLKSVKMKKLAAVQKLLKNEN 128
           E   KI ++L K     RR NE D+NV+   +QEI RK V+K +KMKKL  VQKLL+NE 
Sbjct: 91  EQEFKIQAYLEKSKRPRRRKNEGDRNVILCTQQEILRKKVMKLIKMKKLIEVQKLLRNEI 150

Query: 127 NMEPWGRDAQANV--FVIYLHTHSAFI 53
            ME WGRD QA +   +I L   SAF+
Sbjct: 151 EMESWGRDGQAKLGSRLIELLLESAFV 177


>gb|PKA50864.1| DNA-directed RNA polymerase 3, chloroplastic [Apostasia
           shenzhenica]
          Length = 793

 Score = 73.6 bits (179), Expect = 1e-12
 Identities = 42/84 (50%), Positives = 59/84 (70%), Gaps = 5/84 (5%)
 Frame = -3

Query: 289 LVKIYSFLGKIRRNNEVD---KNVVFSKEQEIKRKHVLKSVKMKKLAAVQKLLKNENNME 119
           LV I+++L K +R+ +      NV+ SKEQ+ + K+VLK +KMKKLA VQKLL+ E +ME
Sbjct: 98  LVIIHTYLEKTKRHGKRSCQCDNVILSKEQQKRHKYVLKLIKMKKLAEVQKLLRVEADME 157

Query: 118 PWGRDAQANV--FVIYLHTHSAFI 53
           PWGRDAQA +   +I +   SAF+
Sbjct: 158 PWGRDAQAKLGSRLIEMLIESAFV 181


>ref|XP_020597755.1| DNA-directed RNA polymerase 3, chloroplastic-like [Phalaenopsis
           equestris]
          Length = 985

 Score = 68.9 bits (167), Expect = 6e-11
 Identities = 39/81 (48%), Positives = 56/81 (69%), Gaps = 3/81 (3%)
 Frame = -3

Query: 286 VKIYSFLGKI-RRNNEVDKNVVFSKEQEIKRKHVLKSVKMKKLAAVQKLLKNENNMEPWG 110
           V+I  ++ K  RR N V  +++ +KEQ+ ++K V+K +KMK+L  VQKLLK E +MEPWG
Sbjct: 273 VRIQCYVEKSKRRRNRVCPDIISTKEQQKRQKLVMKFIKMKRLVEVQKLLKEEIDMEPWG 332

Query: 109 RDAQANV--FVIYLHTHSAFI 53
           RDAQA +   +I L   SAF+
Sbjct: 333 RDAQAKLGTRLIKLLIESAFV 353


>ref|XP_020109600.1| DNA-directed RNA polymerase 3B, chloroplastic-like [Ananas comosus]
          Length = 976

 Score = 67.0 bits (162), Expect = 3e-10
 Identities = 40/87 (45%), Positives = 53/87 (60%), Gaps = 6/87 (6%)
 Frame = -3

Query: 295 EMLVKIYSFLGKI----RRNNEVDKNVVFSKEQEIKRKHVLKSVKMKKLAAVQKLLKNEN 128
           E   KI+S+  K     RR N+ ++N + SKE+   RKHV+  VKM+KL   QKL+K E 
Sbjct: 258 EQEFKIHSYFQKSKRSGRRKNQGEENEMVSKEEGKLRKHVMNLVKMRKLTEAQKLIKTEI 317

Query: 127 NMEPWGRDAQANV--FVIYLHTHSAFI 53
             EPWGRDAQA +   +I L   SAF+
Sbjct: 318 ETEPWGRDAQAKLGSRLIELLMESAFV 344


>ref|XP_010904634.1| PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic isoform X2
           [Elaeis guineensis]
          Length = 877

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 38/83 (45%), Positives = 54/83 (65%), Gaps = 6/83 (7%)
 Frame = -3

Query: 283 KIYSFLGKI----RRNNEVDKNVVFSKEQEIKRKHVLKSVKMKKLAAVQKLLKNENNMEP 116
           KI+++L K     RR N+ +K+V+ ++ Q   RK V K +KMKKL  VQKL+KNE  ++ 
Sbjct: 180 KIHTYLEKTKRPGRRKNQEEKDVILNQGQGNLRKKVTKLIKMKKLIEVQKLVKNEIELDS 239

Query: 115 WGRDAQANV--FVIYLHTHSAFI 53
           WGRDAQA +   +I L   SAF+
Sbjct: 240 WGRDAQAKLGSRLIELLIESAFV 262


>ref|XP_010904633.1| PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic isoform X1
           [Elaeis guineensis]
          Length = 894

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 38/83 (45%), Positives = 54/83 (65%), Gaps = 6/83 (7%)
 Frame = -3

Query: 283 KIYSFLGKI----RRNNEVDKNVVFSKEQEIKRKHVLKSVKMKKLAAVQKLLKNENNMEP 116
           KI+++L K     RR N+ +K+V+ ++ Q   RK V K +KMKKL  VQKL+KNE  ++ 
Sbjct: 180 KIHTYLEKTKRPGRRKNQEEKDVILNQGQGNLRKKVTKLIKMKKLIEVQKLVKNEIELDS 239

Query: 115 WGRDAQANV--FVIYLHTHSAFI 53
           WGRDAQA +   +I L   SAF+
Sbjct: 240 WGRDAQAKLGSRLIELLIESAFV 262


>gb|OAY70002.1| DNA-directed RNA polymerase 3, chloroplastic [Ananas comosus]
          Length = 910

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 39/87 (44%), Positives = 52/87 (59%), Gaps = 6/87 (6%)
 Frame = -3

Query: 295 EMLVKIYSFLGKI----RRNNEVDKNVVFSKEQEIKRKHVLKSVKMKKLAAVQKLLKNEN 128
           E   KI+S+  K     RR N+ ++N + SKE+   RKHV+  VK +KL   QKL+K E 
Sbjct: 258 EQEFKIHSYFQKSKRSGRRKNQGEENEMVSKEEGKLRKHVMNLVKTRKLTEAQKLIKTEI 317

Query: 127 NMEPWGRDAQANV--FVIYLHTHSAFI 53
             EPWGRDAQA +   +I L   SAF+
Sbjct: 318 ETEPWGRDAQAKLGSRLIELLMESAFV 344


>ref|XP_017702071.1| PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic-like
           [Phoenix dactylifera]
          Length = 615

 Score = 63.2 bits (152), Expect = 6e-09
 Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 6/87 (6%)
 Frame = -3

Query: 295 EMLVKIYSFLGKI----RRNNEVDKNVVFSKEQEIKRKHVLKSVKMKKLAAVQKLLKNEN 128
           E   KI ++L K     RR ++ +K+V+ ++ QE  RK V K +KMKKL  VQKL+KNE 
Sbjct: 176 EQEFKILTYLEKTKRPGRRKSQEEKDVILNQGQENLRKKVTKLIKMKKLIEVQKLVKNEI 235

Query: 127 NMEPWGRDAQANV--FVIYLHTHSAFI 53
            ++ WGRD QA +   +I L   SAF+
Sbjct: 236 ELDSWGRDGQAKLGSRLIELLIESAFV 262


>ref|XP_010273707.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic isoform X2
           [Nelumbo nucifera]
          Length = 845

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 39/88 (44%), Positives = 54/88 (61%), Gaps = 7/88 (7%)
 Frame = -3

Query: 295 EMLVKIYSFLGKIRRNN-----EVDKNVVFSKEQEIKRKHVLKSVKMKKLAAVQKLLKNE 131
           E  V+I++FL K ++       E   +   +KEQ+I RK V   VK KKL  VQKL+KNE
Sbjct: 236 EQEVRIHNFLKKTKKYQGGKKIEGQGDDKVTKEQDILRKRVNILVKKKKLIEVQKLVKNE 295

Query: 130 NNMEPWGRDAQANV--FVIYLHTHSAFI 53
           N + PWGRDAQA +   +I L T +A++
Sbjct: 296 NEIRPWGRDAQAKLGSRLIELLTETAYV 323


>ref|XP_010273705.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic isoform X1
           [Nelumbo nucifera]
          Length = 956

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 39/88 (44%), Positives = 54/88 (61%), Gaps = 7/88 (7%)
 Frame = -3

Query: 295 EMLVKIYSFLGKIRRNN-----EVDKNVVFSKEQEIKRKHVLKSVKMKKLAAVQKLLKNE 131
           E  V+I++FL K ++       E   +   +KEQ+I RK V   VK KKL  VQKL+KNE
Sbjct: 236 EQEVRIHNFLKKTKKYQGGKKIEGQGDDKVTKEQDILRKRVNILVKKKKLIEVQKLVKNE 295

Query: 130 NNMEPWGRDAQANV--FVIYLHTHSAFI 53
           N + PWGRDAQA +   +I L T +A++
Sbjct: 296 NEIRPWGRDAQAKLGSRLIELLTETAYV 323


>ref|XP_016750005.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Gossypium hirsutum]
          Length = 972

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 5/86 (5%)
 Frame = -3

Query: 295 EMLVKIYSFLGKIR---RNNEVDKNVVFSKEQEIKRKHVLKSVKMKKLAAVQKLLKNENN 125
           E  V+I+SFL K +   R   VD+    SKE+EI RK V   ++ ++L  VQKL+KNE  
Sbjct: 255 EQEVRIHSFLEKTKNYQRKQIVDEVQGVSKEKEILRKRVNSLIRRRRLTEVQKLVKNE-E 313

Query: 124 MEPWGRDAQANV--FVIYLHTHSAFI 53
           ++PWGRDAQA +   ++ L T +A++
Sbjct: 314 IKPWGRDAQAKLGSCLLELLTETAYV 339


>ref|XP_017615868.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Gossypium
           arboreum]
          Length = 861

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 5/86 (5%)
 Frame = -3

Query: 295 EMLVKIYSFLGKIR---RNNEVDKNVVFSKEQEIKRKHVLKSVKMKKLAAVQKLLKNENN 125
           E  V+I+SFL K +   R   VD+    SKE+EI RK V   ++ ++L  VQKL+KNE  
Sbjct: 139 EQEVRIHSFLEKTKNYQRKQIVDEVQGVSKEKEILRKRVNSLIRRRRLTEVQKLVKNE-E 197

Query: 124 MEPWGRDAQANV--FVIYLHTHSAFI 53
           ++PWGRDAQA +   ++ L T +A++
Sbjct: 198 IKPWGRDAQAKLGSRLLELLTETAYV 223


>gb|KHG29144.1| DNA-directed RNA polymerase 3, chloroplastic -like protein
           [Gossypium arboreum]
          Length = 1024

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 5/86 (5%)
 Frame = -3

Query: 295 EMLVKIYSFLGKIR---RNNEVDKNVVFSKEQEIKRKHVLKSVKMKKLAAVQKLLKNENN 125
           E  V+I+SFL K +   R   VD+    SKE+EI RK V   ++ ++L  VQKL+KNE  
Sbjct: 255 EQEVRIHSFLEKTKNYQRKQIVDEVQGVSKEKEILRKRVNSLIRRRRLTEVQKLVKNE-E 313

Query: 124 MEPWGRDAQANV--FVIYLHTHSAFI 53
           ++PWGRDAQA +   ++ L T +A++
Sbjct: 314 IKPWGRDAQAKLGSRLLELLTETAYV 339


>gb|PPD74699.1| hypothetical protein GOBAR_DD28392 [Gossypium barbadense]
          Length = 856

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 5/86 (5%)
 Frame = -3

Query: 295 EMLVKIYSFLGKIR---RNNEVDKNVVFSKEQEIKRKHVLKSVKMKKLAAVQKLLKNENN 125
           E  V+I+SFL K +   R   VD+    SKE+EI RK V   ++ ++L  VQKL+KNE  
Sbjct: 139 EQEVRIHSFLEKTKNYQRKQIVDEVQGASKEKEILRKRVNSLIRRRRLTEVQKLVKNE-E 197

Query: 124 MEPWGRDAQANV--FVIYLHTHSAFI 53
           ++PWGRDAQA +   ++ L T +A++
Sbjct: 198 IKPWGRDAQAKLGSRLLELLTETAYV 223