BLASTX nr result
ID: Ophiopogon23_contig00024459
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon23_contig00024459
(1488 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|OMO92476.1| hypothetical protein CCACVL1_06836 [Corchorus cap... 129 2e-59
dbj|GAV67225.1| zf-CCHC domain-containing protein/rve domain-con... 114 6e-45
gb|OMO58188.1| Integrase, catalytic core [Corchorus capsularis] 96 9e-42
ref|XP_009783587.1| PREDICTED: uncharacterized protein LOC104232... 128 4e-30
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e... 99 1e-27
ref|XP_019261101.1| PREDICTED: uncharacterized protein LOC109239... 88 3e-27
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 100 1e-26
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc... 99 1e-26
dbj|BAA22288.1| polyprotein [Oryza australiensis] 97 5e-26
gb|ADJ18449.1| gag/pol protein, partial [Bryonia dioica] 99 3e-25
gb|PNX85475.1| copia protein (gag-int-pol protein), partial [Tri... 89 3e-24
gb|KYP42262.1| Retrovirus-related Pol polyprotein from transposo... 87 4e-24
emb|CAN82637.1| hypothetical protein VITISV_028818 [Vitis vinifera] 92 2e-23
gb|KZV50107.1| hypothetical protein F511_31489, partial [Dorcoce... 89 4e-23
emb|CBI20118.3| unnamed protein product, partial [Vitis vinifera] 87 5e-23
gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-... 91 7e-23
emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera] 98 9e-23
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 87 1e-22
gb|KZV51625.1| hypothetical protein F511_24998 [Dorcoceras hygro... 87 1e-22
gb|KZV39555.1| hypothetical protein F511_13790, partial [Dorcoce... 87 1e-22
>gb|OMO92476.1| hypothetical protein CCACVL1_06836 [Corchorus capsularis]
Length = 949
Score = 129 bits (323), Expect(3) = 2e-59
Identities = 68/109 (62%), Positives = 79/109 (72%), Gaps = 3/109 (2%)
Frame = -2
Query: 737 YVITFIDHYTRYGYVFLISHKLEALNSFRLYMNLVENQKKSTIKALHTDHVGEYSSEMFM 558
Y I FID +TR+G+V+LISHK EALN FRLY+ LVENQ +IK L TD EY SE F
Sbjct: 638 YFIIFIDDFTRFGHVYLISHKSEALNCFRLYVALVENQLGQSIKVLRTDRGREYLSEKFK 697
Query: 557 QFCNGKGIPRQLL---TP*QNGVAERWYHTLLEMIRMMMAHANLPISFW 420
+ C+ KGI RQL TP QNGVAER TLL+M+R MMA ANLPIS+W
Sbjct: 698 ELCDEKGILRQLTILGTPQQNGVAERRNRTLLDMVRSMMAQANLPISYW 746
Score = 91.7 bits (226), Expect(3) = 2e-59
Identities = 53/125 (42%), Positives = 67/125 (53%), Gaps = 34/125 (27%)
Frame = -1
Query: 1017 FENNDVRIF*GTTYYGSGFSSDGLFILDIYYS----INNSTSFLTT----ANNSITWHVR 862
FE N V IF GTTYYG F +GL +LD+ YS +++S S + T N+S+ WH R
Sbjct: 506 FEGNKVDIFLGTTYYGCSFVQNGLMVLDLDYSSYNKVDDSISLVVTHDDVCNDSVEWHAR 565
Query: 861 LGHIGQERMNMLARF--------------------------FGRVIRESSPLELIHFDIC 760
LGHIGQ+RMN L R FG+ R S PL+LIH D+C
Sbjct: 566 LGHIGQDRMNRLVREGLLGPLAKVSLPTCEHCLAGKATRKPFGKAKRASIPLQLIHSDVC 625
Query: 759 GPMSV 745
GPM+V
Sbjct: 626 GPMNV 630
Score = 60.5 bits (145), Expect(3) = 2e-59
Identities = 31/70 (44%), Positives = 41/70 (58%)
Frame = -3
Query: 1228 VGFAEYCRIPVGSRVLFMHNGESMKVFGMGTYKLDLHG*CTLLIHDVLMLMMFGETYHQL 1049
VGF E+ RIP GSR + M N S+ V G+GTYKL++ G TLL+HDVL +
Sbjct: 435 VGFVEFRRIPAGSRSMKMGNDSSVNVLGIGTYKLEMRGGRTLLLHDVLYAPEIRRNLFSV 494
Query: 1048 LVYLG*DFTY 1019
+ LG F +
Sbjct: 495 ITMLGLGFRF 504
>dbj|GAV67225.1| zf-CCHC domain-containing protein/rve domain-containing
protein/RVT_2 domain-containing protein/gag_pre-integrs
domain-containing protein/UBN2_2 domain-containing
protein, partial [Cephalotus follicularis]
Length = 980
Score = 114 bits (285), Expect(3) = 6e-45
Identities = 60/109 (55%), Positives = 74/109 (67%), Gaps = 3/109 (2%)
Frame = -2
Query: 737 YVITFIDHYTRYGYVFLISHKLEALNSFRLYMNLVENQKKSTIKALHTDHVGEYSSEMFM 558
Y +TFID Y+R+G VFL++H+ EAL+ F+ ++ ENQK +K L TD EY S F
Sbjct: 516 YFLTFIDDYSRFGQVFLLAHRSEALDCFKRFIAESENQKGRNLKILQTDRGREYLSAQFN 575
Query: 557 QFCNGKGIPRQL---LTP*QNGVAERWYHTLLEMIRMMMAHANLPISFW 420
+ C KGI RQL TP QNGVAER TLL+M+R MMA ANLPISFW
Sbjct: 576 KLCELKGIKRQLTIPYTPQQNGVAERRNRTLLDMVRSMMAQANLPISFW 624
Score = 71.6 bits (174), Expect(3) = 6e-45
Identities = 43/117 (36%), Positives = 58/117 (49%), Gaps = 26/117 (22%)
Frame = -1
Query: 1017 FENNDVRIF*GTTYYGSGFSSDGLFILDIYYSINNSTSFLTTANNSITWHVRLGHIGQER 838
F+N+ + I G G + LF +D+ S ++S T +S+TWH RLGHIGQ+R
Sbjct: 392 FKNSSLEITLDDIIIGHGNLCNNLFNMDLVDSDSSSLFVNTNDIDSVTWHARLGHIGQDR 451
Query: 837 MNMLARF--------------------------FGRVIRESSPLELIHFDICGPMSV 745
M LAR FG+ IR + PLEL+H DICGPM+V
Sbjct: 452 MTRLAREGLLGPLAKVNLPICEPCLAGKASRKPFGKAIRATHPLELVHSDICGPMNV 508
Score = 46.6 bits (109), Expect(3) = 6e-45
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = -3
Query: 1225 GFAEYCRIPVGSRVLFMHNGESMKVFGMGTYKLDLHG*CTLLIHDVL 1085
GF +Y RIP GS+ ++M N S +V G+G Y+L L TLL++DV+
Sbjct: 322 GFVDYRRIPAGSQRIYMGNDSSEEVLGVGCYQLPLRTGRTLLLYDVM 368
>gb|OMO58188.1| Integrase, catalytic core [Corchorus capsularis]
Length = 1486
Score = 95.5 bits (236), Expect(3) = 9e-42
Identities = 55/125 (44%), Positives = 69/125 (55%), Gaps = 34/125 (27%)
Frame = -1
Query: 1017 FENNDVRIF*GTTYYGSGFSSDGLFILDIYYS----INNSTSFLTT----ANNSITWHVR 862
FE N V IF GTTYYG GF +GL +LD+ YS +++S S + T N+S+ WH R
Sbjct: 414 FEGNKVDIFLGTTYYGCGFVQNGLMVLDLDYSSYNKVDDSISLVVTHNDVCNDSVEWHAR 473
Query: 861 LGHIGQERMNMLARF--------------------------FGRVIRESSPLELIHFDIC 760
LGHIGQ+RMN LAR FG+ R S PL+LIH D+C
Sbjct: 474 LGHIGQDRMNRLAREGLLGPLAKVSLPTCEHCLAGKATRKPFGKAKRASIPLQLIHSDVC 533
Query: 759 GPMSV 745
GPM+V
Sbjct: 534 GPMNV 538
Score = 68.6 bits (166), Expect(3) = 9e-42
Identities = 43/106 (40%), Positives = 51/106 (48%)
Frame = -2
Query: 737 YVITFIDHYTRYGYVFLISHKLEALNSFRLYMNLVENQKKSTIKALHTDHVGEYSSEMFM 558
Y ITFID +TR+G+V+LISHK EALN FR Y+ LVENQ +IKAL T+ E
Sbjct: 546 YFITFIDDFTRFGHVYLISHKSEALNCFRRYVALVENQLGQSIKALRTNRGRE------- 598
Query: 557 QFCNGKGIPRQLLTP*QNGVAERWYHTLLEMIRMMMAHANLPISFW 420
MMA ANLPIS+W
Sbjct: 599 ---------------------------------SMMAQANLPISYW 611
Score = 57.8 bits (138), Expect(3) = 9e-42
Identities = 30/70 (42%), Positives = 40/70 (57%)
Frame = -3
Query: 1228 VGFAEYCRIPVGSRVLFMHNGESMKVFGMGTYKLDLHG*CTLLIHDVLMLMMFGETYHQL 1049
VGF E+ RIP GSR + M N S+ V G+ TYKL++ G TLL+HDVL +
Sbjct: 343 VGFVEFRRIPAGSRSMKMGNDSSVNVLGIDTYKLEMRGGRTLLLHDVLYAPEIRRNLFSV 402
Query: 1048 LVYLG*DFTY 1019
+ LG F +
Sbjct: 403 ITMLGLGFRF 412
>ref|XP_009783587.1| PREDICTED: uncharacterized protein LOC104232161 [Nicotiana
sylvestris]
Length = 272
Score = 128 bits (322), Expect = 4e-30
Identities = 69/109 (63%), Positives = 77/109 (70%), Gaps = 3/109 (2%)
Frame = -2
Query: 737 YVITFIDHYTRYGYVFLISHKLEALNSFRLYMNLVENQKKSTIKALHTDHVGEYSSEMFM 558
Y ITFID +TRYGYV+LISHK EAL+ F +MNLVENQ IKAL TD EY S+ F
Sbjct: 11 YFITFIDDFTRYGYVYLISHKSEALSCFVKFMNLVENQLDRKIKALRTDRGREYLSDEFK 70
Query: 557 QFCNGKGIPRQL---LTP*QNGVAERWYHTLLEMIRMMMAHANLPISFW 420
Q C+ KGI RQL TP QNGVAER TLLEM+R MMA A LPI +W
Sbjct: 71 QLCDEKGIQRQLTIPYTPQQNGVAERQNRTLLEMVRSMMAQAKLPIIYW 119
>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 98.6 bits (244), Expect(2) = 1e-27
Identities = 50/109 (45%), Positives = 70/109 (64%), Gaps = 3/109 (2%)
Frame = -2
Query: 737 YVITFIDHYTRYGYVFLISHKLEALNSFRLYMNLVENQKKSTIKALHTDHVGEYSSEMFM 558
Y ITF D Y+RYGY++L+ HK E+ F+ + N V+NQ TIK+L +D GE+ S+ F
Sbjct: 605 YFITFTDDYSRYGYIYLMRHKSESFEKFKEFQNEVQNQLGKTIKSLRSDRGGEFLSQEFG 664
Query: 557 QFCNGKGIPRQLL---TP*QNGVAERWYHTLLEMIRMMMAHANLPISFW 420
GI QL TP NGV+ER TLL+M+R+MM+ ++LP+ FW
Sbjct: 665 NHLKQCGIVPQLTPPSTPQWNGVSERCNRTLLDMVRLMMSQSDLPLYFW 713
Score = 55.5 bits (132), Expect(2) = 1e-27
Identities = 39/124 (31%), Positives = 53/124 (42%), Gaps = 31/124 (25%)
Frame = -1
Query: 1020 IFENNDVRIF*GTTYYGSGFSSDGLFILDI----YYSINNSTSFLTTANNSITWHVRLGH 853
I E++ IF +YG +GLFIL++ ++IN N++ WH RLGH
Sbjct: 475 IIEDHGCSIFLNDMFYGYAPVLNGLFILNLDDAPIFNINAKRLRPNNMNSTFIWHCRLGH 534
Query: 852 IGQERMNML---------------------------ARFFGRVIRESSPLELIHFDICGP 754
I ++RM L F GR R S L LIH D+CGP
Sbjct: 535 ISEKRMKKLHDDGILNSFDLESFETCESCILGKMTKTPFTGRNERASDLLALIHTDVCGP 594
Query: 753 MSVS 742
MS +
Sbjct: 595 MSTT 598
>ref|XP_019261101.1| PREDICTED: uncharacterized protein LOC109239051 [Nicotiana
attenuata]
Length = 436
Score = 88.2 bits (217), Expect(2) = 3e-27
Identities = 44/75 (58%), Positives = 51/75 (68%)
Frame = -2
Query: 737 YVITFIDHYTRYGYVFLISHKLEALNSFRLYMNLVENQKKSTIKALHTDHVGEYSSEMFM 558
Y I FID +TR+GYV+LISHK EAL F+ YMN VENQ +IK L TD EY S+ F
Sbjct: 356 YFIIFIDDFTRFGYVYLISHKSEALECFKRYMNEVENQLDKSIKVLRTDRRREYLSKQFE 415
Query: 557 QFCNGKGIPRQLLTP 513
+ C KGI RQL TP
Sbjct: 416 ELCTVKGIIRQLTTP 430
Score = 64.3 bits (155), Expect(2) = 3e-27
Identities = 46/130 (35%), Positives = 56/130 (43%), Gaps = 34/130 (26%)
Frame = -1
Query: 1032 RISLIFENNDVRIF*GTTYYGSGFSSDGLFILDIY-----YSINNSTSFLTTANNSI--- 877
R+S N VRI YG G D ILD Y ++ ++NN I
Sbjct: 219 RVSPGSSRNGVRISLDNVLYGFGLRYDRFIILDCNLSTYDYYVDRCVMAYYSSNNDIDVI 278
Query: 876 TWHVRLGHIGQERMNMLA--------------------------RFFGRVIRESSPLELI 775
TWH RLGHIGQ+RMN LA + FG+ R P +LI
Sbjct: 279 TWHARLGHIGQDRMNRLANEVHLGSFSKIDMPTCENCLAGKITRKPFGKAKRVVFPFQLI 338
Query: 774 HFDICGPMSV 745
H DICGPM+V
Sbjct: 339 HSDICGPMNV 348
>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana]
emb|CAB80804.1| putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 99.8 bits (247), Expect(3) = 1e-26
Identities = 51/109 (46%), Positives = 70/109 (64%), Gaps = 3/109 (2%)
Frame = -2
Query: 737 YVITFIDHYTRYGYVFLISHKLEALNSFRLYMNLVENQKKSTIKALHTDHVGEYSSEMFM 558
Y ITF D ++RYGYV+L+ HK ++ +F+ + N V+NQ +IKAL +D GEY S++F
Sbjct: 161 YFITFTDDFSRYGYVYLMKHKSKSFENFKEFQNEVQNQFGKSIKALRSDRGGEYLSQVFS 220
Query: 557 QFCNGKGIPRQLL---TP*QNGVAERWYHTLLEMIRMMMAHANLPISFW 420
GI QL TP NGV+ER TLL+M+R MM+H +LP FW
Sbjct: 221 DHLRECGIVSQLTPPGTPQWNGVSERRNRTLLDMVRSMMSHTDLPSPFW 269
Score = 47.4 bits (111), Expect(3) = 1e-26
Identities = 35/116 (30%), Positives = 46/116 (39%), Gaps = 30/116 (25%)
Frame = -1
Query: 978 YYGSGFSSDGLFILDI---YYSINNSTSFLTTANNSITWHVRLGHIGQERMNML------ 826
+YGS +GL +L+ Y+I N + WH RLGHI ++ + L
Sbjct: 46 FYGSAPLDNGLHVLNQSMPIYNIRTKKFKSNDLNPTFLWHCRLGHINEKHIQKLHSDGLL 105
Query: 825 ---------------------ARFFGRVIRESSPLELIHFDICGPMSVSHLCHYIY 721
A F G R S L LIH D+CGPMS S +Y Y
Sbjct: 106 NSFDYESYETCESCLLGKMTKAPFTGHSERASDLLGLIHTDVCGPMSTSARGNYQY 161
Score = 23.5 bits (49), Expect(3) = 1e-26
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -2
Query: 1091 CPYAYDVRRDLSSITCLLRLGFHLFLR 1011
C Y + +++ S++CL GFH ++
Sbjct: 8 CYYVPAINKNIISVSCLDMEGFHFSIK 34
>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1745
Score = 99.4 bits (246), Expect(2) = 1e-26
Identities = 53/109 (48%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
Frame = -2
Query: 737 YVITFIDHYTRYGYVFLISHKLEALNSFRLYMNLVENQKKSTIKALHTDHVGEYSSEMFM 558
Y ITF D ++RYGYV+L+ HK E+ F+ + N V+N + TIK L +DH GEY S F
Sbjct: 993 YFITFTDDFSRYGYVYLMRHKSESFEKFKEFQNEVQNHLRKTIKYLRSDHGGEYLSLEFG 1052
Query: 557 QFCNGKGIPRQLL---TP*QNGVAERWYHTLLEMIRMMMAHANLPISFW 420
G GI QL TP NGV+ER TLL M+R MM+ NL +SFW
Sbjct: 1053 NHLKGCGIVPQLTPPGTPQWNGVSERRNRTLLNMVRSMMSQTNLLLSFW 1101
Score = 50.8 bits (120), Expect(2) = 1e-26
Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 31/128 (24%)
Frame = -1
Query: 1011 NNDVRIF*GTTYYGSGFSSDGLFILDI----YYSINNSTSFLTTANNSITWHVRLGHIGQ 844
+N ++ +Y GL+I+++ Y+IN N + WH RLGHI +
Sbjct: 866 DNGCSVYYNDIFYFHAPMMSGLYIVNLDGCSIYNINAKRQGPNDLNPTFIWHCRLGHINE 925
Query: 843 ERMNMLAR---------------------------FFGRVIRESSPLELIHFDICGPMSV 745
+RM L R F G+ R S L L+H D+CGPMS
Sbjct: 926 KRMEKLHRDGLLHSLDFESFETCESCLLGKMTKAPFTGQSERTSELLVLVHTDVCGPMSS 985
Query: 744 SHLCHYIY 721
+ C + Y
Sbjct: 986 TARCGFGY 993
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 96.7 bits (239), Expect(2) = 5e-26
Identities = 50/109 (45%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Frame = -2
Query: 737 YVITFIDHYTRYGYVFLISHKLEALNSFRLYMNLVENQKKSTIKALHTDHVGEYSSEMFM 558
Y ITF D ++RYGY++L+ HK E+ F+ + N V+N TIK L +D GEY S+ F
Sbjct: 517 YFITFTDDFSRYGYIYLMRHKSESFEKFKEFQNEVQNHLGKTIKFLRSDRGGEYVSQEFG 576
Query: 557 QFCNGKGIPRQLL---TP*QNGVAERWYHTLLEMIRMMMAHANLPISFW 420
GI QL TP NGV+ER TLL+M+R MM+ ++LP+SFW
Sbjct: 577 NHLKDCGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSMMSQSDLPLSFW 625
Score = 51.6 bits (122), Expect(2) = 5e-26
Identities = 37/128 (28%), Positives = 51/128 (39%), Gaps = 31/128 (24%)
Frame = -1
Query: 1011 NNDVRIF*GTTYYGSGFSSDGLFILDI----YYSINNSTSFLTTANNSITWHVRLGHIGQ 844
NN I+ +Y +GL++L++ Y+IN N + WH RLGHI +
Sbjct: 390 NNGCSIYLRDMFYFHAPLVNGLYVLNLEASPIYNINTERQLSNDINPTFIWHCRLGHINK 449
Query: 843 ERMNML---------------------------ARFFGRVIRESSPLELIHFDICGPMSV 745
+RM L A F G R S L L+H D+CGPMS
Sbjct: 450 KRMEKLHKDGLLHSFDFESFETCESCLLGKMTKAPFTGHSERASDLLALVHTDVCGPMSS 509
Query: 744 SHLCHYIY 721
+ Y Y
Sbjct: 510 TARGGYQY 517
>gb|ADJ18449.1| gag/pol protein, partial [Bryonia dioica]
Length = 1292
Score = 98.6 bits (244), Expect(2) = 3e-25
Identities = 52/109 (47%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Frame = -2
Query: 737 YVITFIDHYTRYGYVFLISHKLEALNSFRLYMNLVENQKKSTIKALHTDHVGEYSSEMFM 558
Y I+FID ++RYG+V+L+ HK E+ F+ Y VEN+ TIK L +D GEY F
Sbjct: 522 YFISFIDDFSRYGHVYLLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDRGGEYMDSKFQ 581
Query: 557 QFCNGKGIPRQL---LTP*QNGVAERWYHTLLEMIRMMMAHANLPISFW 420
+ GI QL TP QNGV+ER TLL+M+R MM++A LP SFW
Sbjct: 582 DYLIEFGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSYAQLPDSFW 630
Score = 47.0 bits (110), Expect(2) = 3e-25
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 27/99 (27%)
Frame = -1
Query: 936 DIYYSINNSTSFLTTANNSITWHVRLGHIGQERMNMLAR--------------------- 820
+++ ++ ++N+ WH+RLGHI R+ L +
Sbjct: 424 EMFRTLETQNKKQKVSSNAYLWHLRLGHINLNRIERLVKSGILNQLEDNSLPPCESCLEG 483
Query: 819 ------FFGRVIRESSPLELIHFDICGPMSVSHLCHYIY 721
F G+ +R PLEL+H D+CGPM+V Y Y
Sbjct: 484 KMTKRSFTGKGLRAKVPLELVHSDLCGPMNVKARGGYEY 522
>gb|PNX85475.1| copia protein (gag-int-pol protein), partial [Trifolium pratense]
Length = 540
Score = 89.4 bits (220), Expect(3) = 3e-24
Identities = 50/105 (47%), Positives = 64/105 (60%), Gaps = 3/105 (2%)
Frame = -2
Query: 737 YVITFIDHYTRYGYVFLISHKLEALNSFRLYMNLVENQKKSTIKALHTDHVGEYSSEMFM 558
Y ITF D ++R+GYV+L+ HK E+ F+ + N VENQ IK L +D GEY S F
Sbjct: 436 YFITFTDDFSRFGYVYLMKHKSESFTLFKEFQNEVENQLGKKIKMLRSDRGGEYLSLEFD 495
Query: 557 QFCNGKGIPRQLL---TP*QNGVAERWYHTLLEMIRMMMAHANLP 432
GI QL TP NGV+ER TLL+M+R MM+HA+LP
Sbjct: 496 NHLKECGILSQLTPPGTPQWNGVSERRNRTLLDMVRSMMSHADLP 540
Score = 49.7 bits (117), Expect(3) = 3e-24
Identities = 35/123 (28%), Positives = 50/123 (40%), Gaps = 30/123 (24%)
Frame = -1
Query: 1026 SLIFENNDVRIF*GTTYYGSGFSSDGLFILDI---YYSINNSTSFLTTANNSITWHVRLG 856
S I +N I+ Y + +GL+ILD+ Y+IN N + WH RLG
Sbjct: 305 SFIIKNKCCSIYLDNILYANAIMINGLYILDLDMPVYNINAKRIKPNELNPTYLWHCRLG 364
Query: 855 HIGQERMNMLAR---------------------------FFGRVIRESSPLELIHFDICG 757
HI + R++ L + F G R S L LIH D+CG
Sbjct: 365 HINENRISKLHKDGMLDSFDFESYETCRSCLLGKMTKPPFTGHKERASDLLGLIHTDVCG 424
Query: 756 PMS 748
P++
Sbjct: 425 PLN 427
Score = 23.5 bits (49), Expect(3) = 3e-24
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -2
Query: 1091 CPYAYDVRRDLSSITCLLRLGFHLFLR 1011
C Y + R++ S++CL + GF ++
Sbjct: 283 CYYVPAISRNIISVSCLDKCGFSFIIK 309
>gb|KYP42262.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 656
Score = 86.7 bits (213), Expect(2) = 4e-24
Identities = 45/110 (40%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
Frame = -2
Query: 740 TYVITFIDHYTRYGYVFLISHKLEALNSFRLYMNLVENQKKSTIKALHTDHVGEYSSEMF 561
+Y ITF D +RYG+V+L+ HK E+ F+ + + VE Q +K L +D GEY S F
Sbjct: 442 SYFITFTDDMSRYGFVYLMKHKSESFEMFKRFRSEVEKQTGKNVKVLRSDRGGEYLSNDF 501
Query: 560 MQFCNGKGIPRQLL---TP*QNGVAERWYHTLLEMIRMMMAHANLPISFW 420
+ GI Q TP NGV+ER TLL+M++ MM +LPI+ W
Sbjct: 502 LDHLKENGILSQWKPPGTPQHNGVSERRNRTLLDMVKSMMGFTDLPINLW 551
Score = 55.5 bits (132), Expect(2) = 4e-24
Identities = 38/133 (28%), Positives = 54/133 (40%), Gaps = 33/133 (24%)
Frame = -1
Query: 1020 IFENNDVRIF*GTTYYGSGFSSDGLFILD------IYYSINNSTSFLTTANNSITWHVRL 859
IF NN I+ G Y +G+ G+++L + + N N + WH RL
Sbjct: 311 IFNNNICSIYRGDDLYVNGYLQHGIYVLPDVNLNPVMHVSNVKRKRDDQVNKTYLWHCRL 370
Query: 858 GHIGQERMNMLAR---------------------------FFGRVIRESSPLELIHFDIC 760
GHIG++R+N L + F G+ R S L LIH D+C
Sbjct: 371 GHIGEKRINKLHKEGYLDQYDYESYTTCESCLKGKMTKSPFTGKGERASELLGLIHTDVC 430
Query: 759 GPMSVSHLCHYIY 721
GPM + Y Y
Sbjct: 431 GPMKIQAKGGYSY 443
>emb|CAN82637.1| hypothetical protein VITISV_028818 [Vitis vinifera]
Length = 1114
Score = 91.7 bits (226), Expect(2) = 2e-23
Identities = 48/109 (44%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
Frame = -2
Query: 737 YVITFIDHYTRYGYVFLISHKLEALNSFRLYMNLVENQKKSTIKALHTDHVGEYSSEMFM 558
Y +TFID +R+ YVFL+ +K E N+F++Y VENQ IK L +D GEY S F
Sbjct: 408 YFLTFIDDCSRFTYVFLLKNKSETFNAFKVYKAEVENQLGKNIKVLRSDRGGEYFSSEFN 467
Query: 557 QFCNGKGIPRQL---LTP*QNGVAERWYHTLLEMIRMMMAHANLPISFW 420
FC GI + TP NG+AER T LEM+ M+ HA L + W
Sbjct: 468 SFCEEYGIIHECTAPYTPQHNGIAERKNRTFLEMVNAMLLHAKLNFNLW 516
Score = 48.1 bits (113), Expect(2) = 2e-23
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 28/118 (23%)
Frame = -1
Query: 1029 ISLIFENNDVRIF*GTTYYGSGFSSDGLFILDIYYSINNSTS---FLTTANNSITWHVRL 859
I +FE+ + + + G G+S DG+ L +IN TS ++ +N+ I WH RL
Sbjct: 278 IKAVFESGKLILTKSRNFVGKGYSCDGMIKLSTNDNINKMTSTSAYMCDSNSLILWHNRL 337
Query: 858 GHIGQE-------------------------RMNMLARFFGRVIRESSPLELIHFDIC 760
H+G + M+ + F V R S+ L+LIH D+C
Sbjct: 338 AHVGLSTIKRIVKCGLIACDTKKFEKCEICVKSKMIKKPFHSVERSSNLLDLIHSDLC 395
>gb|KZV50107.1| hypothetical protein F511_31489, partial [Dorcoceras hygrometricum]
Length = 912
Score = 88.6 bits (218), Expect(2) = 4e-23
Identities = 49/109 (44%), Positives = 66/109 (60%), Gaps = 3/109 (2%)
Frame = -2
Query: 737 YVITFIDHYTRYGYVFLISHKLEALNSFRLYMNLVENQKKSTIKALHTDHVGEYSSEMFM 558
Y ITFID TRY YV+L+ K+EA+ +F Y N VENQ S IK + +D GEY + F
Sbjct: 463 YFITFIDDCTRYCYVYLLRSKVEAIEAFTKYKNEVENQLTSKIKMIRSDRGGEYVAP-FE 521
Query: 557 QFCNGKGIPRQL---LTP*QNGVAERWYHTLLEMIRMMMAHANLPISFW 420
+FC+ GI Q +P NGVAER TL EM+ ++ ++ LP + W
Sbjct: 522 EFCSNSGIIHQTTAPYSPQSNGVAERKNRTLKEMMNALLTNSGLPQNLW 570
Score = 50.1 bits (118), Expect(2) = 4e-23
Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 33/134 (24%)
Frame = -1
Query: 1062 LIINYLFT*ARISLIFENNDVRIF*GTTYYGSGFSSDGLFILDIYYSIN-------NSTS 904
L+ L + A L+FE++ + G + G G+ +GLF L++ I N++S
Sbjct: 319 LVSGSLLSKAGFRLVFESDKFVLTKGGMFVGKGYQHNGLFKLNVMNVIRPEAKNKINNSS 378
Query: 903 FLTTANNSITWHVRLGHIGQERMNMLARF--------------------------FGRVI 802
+L +N WH RLGH+ + LA F V
Sbjct: 379 YLIEISN--LWHERLGHVNFNTLQRLANLNVLPAFKRNPQEKCEICVETKLAKAPFHSVT 436
Query: 801 RESSPLELIHFDIC 760
R + PLELIH D+C
Sbjct: 437 RSTKPLELIHTDVC 450
>emb|CBI20118.3| unnamed protein product, partial [Vitis vinifera]
Length = 1354
Score = 87.4 bits (215), Expect(3) = 5e-23
Identities = 49/118 (41%), Positives = 68/118 (57%), Gaps = 12/118 (10%)
Frame = -2
Query: 737 YVITFIDHYTRYGYVFLISHKLEALNSFRLYMNLVENQKKSTIKALHTDHVGEYSSEM-- 564
Y ITFID +RYGYV+L+ K +A++ F +++ VE Q IK + +D GEY
Sbjct: 883 YFITFIDDLSRYGYVYLMHEKSQAIDIFEMFITEVERQLDKKIKIVRSDQGGEYYGRYDE 942
Query: 563 -------FMQFCNGKGIPRQLL---TP*QNGVAERWYHTLLEMIRMMMAHANLPISFW 420
F +F GI Q TP QNGVAER TL+EM+R MM+++++PIS W
Sbjct: 943 SGQNPGPFAKFLEKHGIRAQYTMPGTPQQNGVAERRNRTLMEMVRSMMSYSSVPISLW 1000
Score = 49.7 bits (117), Expect(3) = 5e-23
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 36/130 (27%)
Frame = -1
Query: 1026 SLIFENNDVRIF*GTTYYGSGFSSDGLFILDI----------YYSINNSTSFLTTANNSI 877
S++F + + + + GSG DGL+ + + +S S L N+SI
Sbjct: 746 SVLFSSGQLSLMLNSVTIGSGILCDGLYKISLNHEFAQALITLHSNVGSKRGLINENSSI 805
Query: 876 TWHVRLGHIGQERMNMLAR------------------FFGR--------VIRESSPLELI 775
WH RLGHI +ER+ L + G+ R + LE+I
Sbjct: 806 LWHRRLGHISRERIERLVKEGILQNLDFTDFHVCVNCIKGKQTKHTKKGATRSNELLEII 865
Query: 774 HFDICGPMSV 745
H DICGP+S+
Sbjct: 866 HTDICGPLSI 875
Score = 21.2 bits (43), Expect(3) = 5e-23
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -3
Query: 1225 GFAEYCRIPVGSRVLFMHNGESMKVFGMGTYKL 1127
GF + + L+M N ++V +GTY+L
Sbjct: 679 GFLTTRKPKESEKFLYMGNRLKVEVVAVGTYRL 711
>gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
gb|ABA93176.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 938
Score = 91.3 bits (225), Expect(2) = 7e-23
Identities = 49/109 (44%), Positives = 66/109 (60%), Gaps = 3/109 (2%)
Frame = -2
Query: 737 YVITFIDHYTRYGYVFLISHKLEALNSFRLYMNLVENQKKSTIKALHTDHVGEYSSEMFM 558
Y ITF + ++RYGYV+L+ HK ++ F+ + N V+N TIK L +D GEY S F
Sbjct: 402 YFITFTNDFSRYGYVYLMRHKSDSFEKFKEFQNEVQNHLGKTIKYLRSDRGGEYLSLEFG 461
Query: 557 QFCNGKGIPRQLL---TP*QNGVAERWYHTLLEMIRMMMAHANLPISFW 420
GI QL TP NGV+ER TLL+M+R MM+ +LP+SFW
Sbjct: 462 NHLKECGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSMMSQTDLPLSFW 510
Score = 46.6 bits (109), Expect(2) = 7e-23
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 31/119 (26%)
Frame = -1
Query: 1011 NNDVRIF*GTTYYGSGFSSDGLFILDI----YYSINNSTSFLTTANNSITWHVRLGHIGQ 844
+N ++ +Y +GL+I+++ Y+IN N + WH RLGHI +
Sbjct: 275 DNGCSVYYNDIFYFHAPMMNGLYIVNLDGCSVYNINAKRQRPNDLNPTFIWHCRLGHINE 334
Query: 843 ERMNMLAR---------------------------FFGRVIRESSPLELIHFDICGPMS 748
RM L R F G+ + S L L+H D+CGPMS
Sbjct: 335 RRMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSEKASELLGLVHTDVCGPMS 393
>emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]
Length = 1544
Score = 98.2 bits (243), Expect(2) = 9e-23
Identities = 49/109 (44%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Frame = -2
Query: 737 YVITFIDHYTRYGYVFLISHKLEALNSFRLYMNLVENQKKSTIKALHTDHVGEYSSEMFM 558
Y +TF D Y+RYGY++L+ K E F+ + +E + IK L +DH GEY S F+
Sbjct: 841 YFVTFTDDYSRYGYIYLLCRKSECFEKFKAFKAEMEQRHGKYIKTLRSDHGGEYISREFI 900
Query: 557 QFCNGKGIPRQLLT---P*QNGVAERWYHTLLEMIRMMMAHANLPISFW 420
F + +GI QL P QNGVAER TL+EM+R MM++++LPIS W
Sbjct: 901 TFLSEQGITSQLSAPGMPQQNGVAERRNRTLMEMVRSMMSYSDLPISLW 949
Score = 39.3 bits (90), Expect(2) = 9e-23
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 27/70 (38%)
Frame = -1
Query: 873 WHVRLGHIGQERMNMLAR------------------FFGRVIRESSP---------LELI 775
WH+RLGHI +R+++L + G++ + P LELI
Sbjct: 764 WHLRLGHINLDRISLLVKDGPLSSLKVEALPTCESCLEGKMTKRPFPLKGNRANDVLELI 823
Query: 774 HFDICGPMSV 745
H D+CGPMSV
Sbjct: 824 HSDLCGPMSV 833
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gb|AAX92956.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
gb|ABA92827.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 87.0 bits (214), Expect(2) = 1e-22
Identities = 49/109 (44%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
Frame = -2
Query: 737 YVITFIDHYTRYGYVFLISHKLEALNSFRLYMNLVENQKKSTIKALHTDHVGEYSSEMFM 558
Y TF D ++RYGYV+L+ HK E+ F+ + N V+N TIK L +D GEY S F
Sbjct: 493 YFFTFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLGKTIKYLRSDRGGEYLSLEFG 552
Query: 557 QFCNGKGIPRQLL---TP*QNGVAERWYHTLLEMIRMMMAHANLPISFW 420
GI QL TP NGV+E TLL+M+R MM+ NL +SFW
Sbjct: 553 NHLKECGIVPQLTPPGTPQWNGVSEWRNRTLLDMVRSMMSQTNLLLSFW 601
Score = 50.1 bits (118), Expect(2) = 1e-22
Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 31/119 (26%)
Frame = -1
Query: 1011 NNDVRIF*GTTYYGSGFSSDGLFILDI----YYSINNSTSFLTTANNSITWHVRLGHIGQ 844
+ND ++ +Y GL+I+++ Y+IN N + WH RLGHI +
Sbjct: 366 DNDCSVYYNDIFYFHAPMMSGLYIVNLNGYSVYNINAKRQRPNDLNPTFIWHCRLGHINE 425
Query: 843 ERMNMLAR---------------------------FFGRVIRESSPLELIHFDICGPMS 748
+RM + R F G+ R S L L+H D+CGPMS
Sbjct: 426 KRMEKIHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSERASELLALVHTDVCGPMS 484
>gb|KZV51625.1| hypothetical protein F511_24998 [Dorcoceras hygrometricum]
Length = 1328
Score = 86.7 bits (213), Expect(2) = 1e-22
Identities = 49/109 (44%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Frame = -2
Query: 737 YVITFIDHYTRYGYVFLISHKLEALNSFRLYMNLVENQKKSTIKALHTDHVGEYSSEMFM 558
Y ITFID TRY YV+L+ K EA+ +F Y N VENQ S IK + +D GEY + F
Sbjct: 524 YFITFIDDCTRYCYVYLLRSKDEAIEAFTKYKNEVENQLTSKIKMIRSDRGGEYVAP-FE 582
Query: 557 QFCNGKGIPRQL---LTP*QNGVAERWYHTLLEMIRMMMAHANLPISFW 420
+FC+ GI Q +P NGVAER TL EM+ ++ ++ LP + W
Sbjct: 583 EFCSNSGIIHQTTAPYSPQSNGVAERKNRTLKEMMNALLTNSGLPQNLW 631
Score = 50.1 bits (118), Expect(2) = 1e-22
Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 33/134 (24%)
Frame = -1
Query: 1062 LIINYLFT*ARISLIFENNDVRIF*GTTYYGSGFSSDGLFILDIYYSIN-------NSTS 904
L+ L + A L+FE++ + G + G G+ +GLF L++ I N++S
Sbjct: 380 LVSGSLLSKAGFRLVFESDKFVLTKGGMFVGKGYQHNGLFKLNVMNVIRPEAKNKINNSS 439
Query: 903 FLTTANNSITWHVRLGHIGQERMNMLARF--------------------------FGRVI 802
+L +N WH RLGH+ + LA F V
Sbjct: 440 YLIEISN--LWHERLGHVNFNTLQRLANLNVLPAFKRNPQEKCEICVETKLAKAPFHSVT 497
Query: 801 RESSPLELIHFDIC 760
R + PLELIH D+C
Sbjct: 498 RSTKPLELIHTDVC 511
>gb|KZV39555.1| hypothetical protein F511_13790, partial [Dorcoceras hygrometricum]
Length = 1165
Score = 86.7 bits (213), Expect(2) = 1e-22
Identities = 49/109 (44%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Frame = -2
Query: 737 YVITFIDHYTRYGYVFLISHKLEALNSFRLYMNLVENQKKSTIKALHTDHVGEYSSEMFM 558
Y ITFID TRY YV+L+ K EA+ +F Y N VENQ S IK + +D GEY + F
Sbjct: 492 YFITFIDDCTRYCYVYLLRSKDEAIEAFTKYKNEVENQLTSKIKMIRSDRGGEYVAP-FE 550
Query: 557 QFCNGKGIPRQL---LTP*QNGVAERWYHTLLEMIRMMMAHANLPISFW 420
+FC+ GI Q +P NGVAER TL EM+ ++ ++ LP + W
Sbjct: 551 EFCSNSGIIHQTTAPYSPQSNGVAERKNRTLKEMMNALLTNSGLPQNLW 599
Score = 50.1 bits (118), Expect(2) = 1e-22
Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 33/134 (24%)
Frame = -1
Query: 1062 LIINYLFT*ARISLIFENNDVRIF*GTTYYGSGFSSDGLFILDIYYSIN-------NSTS 904
L+ L + A L+FE++ + G + G G+ +GLF L++ I N++S
Sbjct: 348 LVSGSLLSKAGFRLVFESDKFVLTKGGMFVGKGYQHNGLFKLNVMNVIRPEAKNKINNSS 407
Query: 903 FLTTANNSITWHVRLGHIGQERMNMLARF--------------------------FGRVI 802
+L +N WH RLGH+ + LA F V
Sbjct: 408 YLIEISN--LWHERLGHVNFNTLQRLANLNVLPAFKRNPQEKCEICVETKLAKAPFHSVT 465
Query: 801 RESSPLELIHFDIC 760
R + PLELIH D+C
Sbjct: 466 RSTKPLELIHTDVC 479