BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon23_contig00020801
         (1812 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711...   112   2e-44
ref|XP_024038695.1| LOW QUALITY PROTEIN: DNA (cytosine-5)-methyl...    99   6e-40
ref|XP_015866800.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri...   101   9e-38
emb|CAJ86151.1| H0413E07.4 [Oryza sativa]                              97   1e-37
emb|CAJ86192.1| H0306F03.15 [Oryza sativa]                             97   1e-37
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...    96   3e-37
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   102   3e-37
gb|KYP53032.1| Retrovirus-related Pol polyprotein from transposo...   103   4e-37
gb|KYP36645.1| Retrovirus-related Pol polyprotein from transposo...   104   6e-37
gb|KYP42748.1| Retrovirus-related Pol polyprotein from transposo...   103   9e-37
gb|KYP67664.1| Retrovirus-related Pol polyprotein from transposo...   103   9e-37
gb|KYP38095.1| Retrovirus-related Pol polyprotein from transposo...   103   9e-37
pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis t...    84   1e-35
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]                              93   1e-35
ref|XP_008796700.1| PREDICTED: uncharacterized protein LOC103712...    98   6e-35
gb|ABG22121.1| polyprotein, partial [Solanum melongena]                96   4e-34
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc...    86   4e-32
gb|KYP42039.1| Retrovirus-related Pol polyprotein from transposo...   134   9e-31
gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposo...   134   4e-30
gb|KYP53356.1| Retrovirus-related Pol polyprotein from transposo...   134   4e-30

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
 gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  112 bits (280), Expect(4) = 2e-44
 Identities = 71/184 (38%), Positives = 107/184 (58%), Gaps = 5/184 (2%)
 Frame = +2

Query: 95   QFDSFIIKVNYIRCKYDY-IYFKQCNDP--IYLLLYMDDMLIVVARNKTHIQ*IKTRLKR 265
            +FDS+++K+ Y R  YD  +Y+ + ND   IYL+LY+DDMLI  A+ K  IQ +K  L  
Sbjct: 954  RFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLI-AAKKKYDIQKLKGLLSA 1012

Query: 266  KFDMKNLEKKPRS*GWRSLEIEVQEDFVYLKRTMSSRC*NGTT*MKTGHYSFGESLQIVL 445
            +F+MK+L    +  G   +    +      +R+   +         +       +  I L
Sbjct: 1013 EFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHL 1072

Query: 446  *TVSTIKGEEKEMY--RVPYANALGSLMYAMICTMPDLAHAVSTVSRFMSKPGKQY*KAV 619
              +   + EE++ Y  RVPYA+A+GSLMYAM+CT PDLAHAVS VSRFM +PG+++ +AV
Sbjct: 1073 TAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAV 1132

Query: 620  T*VF 631
              +F
Sbjct: 1133 KRIF 1136



 Score = 55.5 bits (132), Expect(4) = 2e-44
 Identities = 26/51 (50%), Positives = 35/51 (68%)
 Frame = +2

Query: 875  MWLRGLVKTFGIV*DSVWIYCGIV*DNHSVIHLAKEYMYHKRTKHIDVRYH 1027
            +WL+GLV   G+  D   +YC    D+ S I LAK+ ++H+RTKHIDVRYH
Sbjct: 1217 IWLKGLVSDLGLHHDQATVYC----DSLSAICLAKDQVHHERTKHIDVRYH 1263



 Score = 54.3 bits (129), Expect(4) = 2e-44
 Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
 Frame = +3

Query: 708  GYIDADYV-DFDQRRSTTSYVFKVAECVVS*KVELQDTSTISTTKSEYIAAVEVS 869
            GY D+DY  D D RRS T YVF +   VVS K  LQ T T+STT++EY+A  E +
Sbjct: 1159 GYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKATLQPTVTLSTTEAEYMALTEAA 1213



 Score = 28.9 bits (63), Expect(4) = 2e-44
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 36  MCLLKMSSYELK*SPRKWY 92
           +C LK S Y LK SPR+WY
Sbjct: 934 VCKLKKSLYGLKQSPRQWY 952


>ref|XP_024038695.1| LOW QUALITY PROTEIN: DNA (cytosine-5)-methyltransferase 1-like
            [Citrus clementina]
          Length = 2164

 Score = 99.0 bits (245), Expect(4) = 6e-40
 Identities = 65/186 (34%), Positives = 99/186 (53%), Gaps = 11/186 (5%)
 Frame = +2

Query: 95   QFDSFIIKVNYIRCKYDY-IYFKQCNDP--IYLLLYMDDMLIVVARNKTHIQ*IKTRLKR 265
            +FD F+I   Y R K+D  +Y+K  +    IYLLLY+DDMLI     K  I+ +K  L  
Sbjct: 699  KFDEFMISHGYCRSKFDNCVYYKLLSSGGGIYLLLYVDDMLIA-CNQKEEIKKLKVELST 757

Query: 266  KFDMKNLEKKPRS*GW-----RSLEIEVQEDFVYLKRTMSSRC*NGTT*MKT---GHYSF 421
            +F+MK+L    +  G      R  ++       Y+KR ++      +  + T    H+  
Sbjct: 758  EFEMKDLGAATKILGMQIIRDRESKVLYLSQADYVKRVLTRFNMEDSKPVSTPLSAHFQL 817

Query: 422  GESLQIVL*TVSTIKGEEKEMYRVPYANALGSLMYAMICTMPDLAHAVSTVSRFMSKPGK 601
             +SL+       T   +   M  +PY++A+GS+MYAM+CT PD+AHAV  +SRF+  PGK
Sbjct: 818  SKSLE------PTTDDDFNYMREIPYSSAVGSIMYAMVCTRPDMAHAVGVISRFIGNPGK 871

Query: 602  QY*KAV 619
             +  AV
Sbjct: 872  DHWNAV 877



 Score = 53.5 bits (127), Expect(4) = 6e-40
 Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
 Frame = +3

Query: 630  LHYL*RAARLDLVFQKLETEKPGVL*GYIDADYV-DFDQRRSTTSYVFKVAECVVS*KVE 806
            L YL   A   ++F K+    P V  G++D+DY  D D+RRS T +VF +    +S K  
Sbjct: 881  LRYLRGTAVTAIMFGKISGASPEVA-GFVDSDYAADKDRRRSITCFVFTICGGAISWKSF 939

Query: 807  LQDTSTISTTKSEYIAAVEV 866
            LQ    +STT++EYIA  EV
Sbjct: 940  LQSVVALSTTEAEYIALTEV 959



 Score = 51.2 bits (121), Expect(4) = 6e-40
 Identities = 29/66 (43%), Positives = 40/66 (60%)
 Frame = +2

Query: 875  MWLRGLVKTFGIV*DSVWIYCGIV*DNHSVIHLAKEYMYHKRTKHIDVRYHKI*Q*INKR 1054
            +WLRGLV   G   + V + C    D+ S I L+K   YH+RTKHIDVR H I   I+K 
Sbjct: 964  IWLRGLVSELGFKQEVVIVGC----DSLSDIQLSKNPKYHERTKHIDVRMHFIRDEISKG 1019

Query: 1055 LIDLVK 1072
            ++++ K
Sbjct: 1020 VVNVAK 1025



 Score = 32.3 bits (72), Expect(4) = 6e-40
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +3

Query: 18  KKDKKTMCLLKMSSYELK*SPRKWY 92
           K  +  +CLLK S Y LK SPR+WY
Sbjct: 673 KGSEDNVCLLKKSLYGLKQSPRQWY 697


>ref|XP_015866800.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
           LOC107404367, partial [Ziziphus jujuba]
          Length = 807

 Score =  101 bits (252), Expect(4) = 9e-38
 Identities = 74/190 (38%), Positives = 105/190 (55%), Gaps = 15/190 (7%)
 Frame = +2

Query: 95  QFDSFIIKVNYIRCKYDY-IYFKQCNDP--IYLLLYMDDMLIVVARNKTHIQ*IKTRLKR 265
           +FD F+    Y R +YD  +YF++  D   IYLLLY+DDMLIV A+ K+ I  +K  L  
Sbjct: 47  RFDGFMFSHGYSRSQYDSCVYFRKLEDGSFIYLLLYVDDMLIV-AKKKSDINRLKAELSG 105

Query: 266 KFDMKNLEKKPRS*GWRSLEIE----------VQEDFV--YLKRTMSSRC*NGTT*MKTG 409
           +F+MK+L    +  G   +EIE           Q  FV   L+R         +T + T 
Sbjct: 106 EFEMKDLGAAKKILG---MEIERDRSAGKLFLTQRSFVEKVLERFGMKNAKPVSTPLAT- 161

Query: 410 HYSFGESLQIVL*TVSTIKGEEKEMYRVPYANALGSLMYAMICTMPDLAHAVSTVSRFMS 589
           H+     +            + + M  VPY++A+GSLMYAM+CT PD+AHAVS VSR+M+
Sbjct: 162 HFRLSADMS------PQSDRDIEYMSHVPYSSAVGSLMYAMVCTRPDIAHAVSVVSRYMA 215

Query: 590 KPGKQY*KAV 619
            PGKQ+ +AV
Sbjct: 216 NPGKQHWQAV 225



 Score = 54.3 bits (129), Expect(4) = 9e-38
 Identities = 27/53 (50%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
 Frame = +3

Query: 708 GYIDADYV-DFDQRRSTTSYVFKVAECVVS*KVELQDTSTISTTKSEYIAAVE 863
           GY+DAD+  D D+RRSTT YVF + +  +S K  LQ T  +STT++EY+A  E
Sbjct: 259 GYVDADFAGDLDRRRSTTGYVFTLGDTSISWKSVLQATVALSTTEAEYMAIAE 311



 Score = 43.5 bits (101), Expect(4) = 9e-38
 Identities = 23/53 (43%), Positives = 31/53 (58%)
 Frame = +2

Query: 875  MWLRGLVKTFGIV*DSVWIYCGIV*DNHSVIHLAKEYMYHKRTKHIDVRYHKI 1033
            +WLR L+       +S  I C    D+ S I+L K+ M+H+RTKHIDV   KI
Sbjct: 317  IWLRALIGELSSEQESTVINC----DSQSAIYLTKDQMFHERTKHIDVLQTKI 365



 Score = 29.3 bits (64), Expect(4) = 9e-38
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 36 MCLLKMSSYELK*SPRKWY 92
          +CLLK S Y LK SP +WY
Sbjct: 27 VCLLKRSLYGLKQSPHQWY 45


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa]
          Length = 1205

 Score = 96.7 bits (239), Expect(4) = 1e-37
 Identities = 66/181 (36%), Positives = 102/181 (56%), Gaps = 2/181 (1%)
 Frame = +2

Query: 95   QFDSFIIKVNYIRCKYDYIYFKQCND--PIYLLLYMDDMLIVVARNKTHIQ*IKTRLKRK 268
            +FDSF++   + R  YD   + +  D   IYLLLY+DDMLI  A++K+ I  +K +L  +
Sbjct: 905  RFDSFMLSQKFRRSNYDSCVYLKVVDGSAIYLLLYVDDMLIA-AKDKSEIAKLKAQLSSE 963

Query: 269  FDMKNLEKKPRS*GWRSLEIEVQEDFVYLKRTMSSRC*NGTT*MKTGHYSFGESLQIVL* 448
            F+MK+L    +  G   +  E   D +YL +        G        ++  ++  I + 
Sbjct: 964  FEMKDLGAAKKILGME-ITRERHSDKLYLSQ-------KGYIEKVLRRFNMHDAKPIYV- 1014

Query: 449  TVSTIKGEEKEMYRVPYANALGSLMYAMICTMPDLAHAVSTVSRFMSKPGKQY*KAVT*V 628
                      ++Y VPY++A+GSLMYAMIC+ PDL+HA+S VSR+M  PGK++ KAV  +
Sbjct: 1015 --------HSQIY-VPYSSAVGSLMYAMICSRPDLSHALSVVSRYMVNPGKEHWKAVQWI 1065

Query: 629  F 631
            F
Sbjct: 1066 F 1066



 Score = 57.4 bits (137), Expect(4) = 1e-37
 Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
 Frame = +3

Query: 708  GYIDADYV-DFDQRRSTTSYVFKVAECVVS*KVELQDTSTISTTKSEYIAAVEVSNSC 878
            GY+D+D+  D D+RRS T YVF +  C VS K  LQ T  +STT++EYIA   +S +C
Sbjct: 1088 GYVDSDFAGDLDRRRSLTGYVFTIGGCAVSWKASLQATVALSTTEAEYIA---ISEAC 1142



 Score = 45.4 bits (106), Expect(4) = 1e-37
 Identities = 25/53 (47%), Positives = 31/53 (58%)
 Frame = +2

Query: 875  MWLRGLVKTFGIV*DSVWIYCGIV*DNHSVIHLAKEYMYHKRTKHIDVRYHKI 1033
            +WLR L      V   + I C    D+ S I L K+ M+H+RTKHIDVRYH I
Sbjct: 1146 IWLRDLYTELCGVTSCINIVC----DSQSAICLTKDQMFHERTKHIDVRYHFI 1194



 Score = 28.9 bits (63), Expect(4) = 1e-37
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 36  MCLLKMSSYELK*SPRKWY 92
           +C LK S Y LK SPR+WY
Sbjct: 885 VCRLKKSLYGLKQSPRQWY 903


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa]
          Length = 1037

 Score = 96.7 bits (239), Expect(4) = 1e-37
 Identities = 66/181 (36%), Positives = 102/181 (56%), Gaps = 2/181 (1%)
 Frame = +2

Query: 95   QFDSFIIKVNYIRCKYDYIYFKQCND--PIYLLLYMDDMLIVVARNKTHIQ*IKTRLKRK 268
            +FDSF++   + R  YD   + +  D   IYLLLY+DDMLI  A++K+ I  +K +L  +
Sbjct: 737  RFDSFMLSQKFRRSNYDSCVYLKVVDGSAIYLLLYVDDMLIA-AKDKSEIAKLKAQLSSE 795

Query: 269  FDMKNLEKKPRS*GWRSLEIEVQEDFVYLKRTMSSRC*NGTT*MKTGHYSFGESLQIVL* 448
            F+MK+L    +  G   +  E   D +YL +        G        ++  ++  I + 
Sbjct: 796  FEMKDLGAAKKILGME-ITRERHSDKLYLSQ-------KGYIEKVLRRFNMHDAKPIYV- 846

Query: 449  TVSTIKGEEKEMYRVPYANALGSLMYAMICTMPDLAHAVSTVSRFMSKPGKQY*KAVT*V 628
                      ++Y VPY++A+GSLMYAMIC+ PDL+HA+S VSR+M  PGK++ KAV  +
Sbjct: 847  --------HSQIY-VPYSSAVGSLMYAMICSRPDLSHALSVVSRYMVNPGKEHWKAVQWI 897

Query: 629  F 631
            F
Sbjct: 898  F 898



 Score = 57.4 bits (137), Expect(4) = 1e-37
 Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
 Frame = +3

Query: 708  GYIDADYV-DFDQRRSTTSYVFKVAECVVS*KVELQDTSTISTTKSEYIAAVEVSNSC 878
            GY+D+D+  D D+RRS T YVF +  C VS K  LQ T  +STT++EYIA   +S +C
Sbjct: 920  GYVDSDFAGDLDRRRSLTGYVFTIGGCAVSWKASLQATVALSTTEAEYIA---ISEAC 974



 Score = 45.4 bits (106), Expect(4) = 1e-37
 Identities = 25/53 (47%), Positives = 31/53 (58%)
 Frame = +2

Query: 875  MWLRGLVKTFGIV*DSVWIYCGIV*DNHSVIHLAKEYMYHKRTKHIDVRYHKI 1033
            +WLR L      V   + I C    D+ S I L K+ M+H+RTKHIDVRYH I
Sbjct: 978  IWLRDLYTELCGVTSCINIVC----DSQSAICLTKDQMFHERTKHIDVRYHFI 1026



 Score = 28.9 bits (63), Expect(4) = 1e-37
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 36  MCLLKMSSYELK*SPRKWY 92
           +C LK S Y LK SPR+WY
Sbjct: 717 VCRLKKSLYGLKQSPRQWY 735


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2340

 Score = 95.5 bits (236), Expect(4) = 3e-37
 Identities = 65/190 (34%), Positives = 106/190 (55%), Gaps = 11/190 (5%)
 Frame = +2

Query: 95   QFDSFIIKVNYIRCKYDYIYFKQCND--PIYLLLYMDDMLIVVARNKTHIQ*IKTRLKRK 268
            +FDSF++   + R  YD   + +  D   IYLLLY+DDMLI  A++K+ I  +K +L  +
Sbjct: 1186 RFDSFMLSQKFRRSNYDSCVYLKVVDGSAIYLLLYVDDMLIA-AKDKSEIAKLKAQLSSE 1244

Query: 269  FDMKNLEKKPRS*GWR------SLEIEVQEDFVYLKRTMSSRC*NGTT*MKT---GHYSF 421
            F+MK+L    +  G        S ++ + +   Y+++ +     +    + T    H+  
Sbjct: 1245 FEMKDLGAAKKILGMEITRKRHSFKLYLSQKG-YIEKVLRRFNMHDAKPVSTPLAAHFRL 1303

Query: 422  GESLQIVL*TVSTIKGEEKEMYRVPYANALGSLMYAMICTMPDLAHAVSTVSRFMSKPGK 601
               L            + + M RVPY++A+GSLMYAM+C+ PDL+HA+S VSR+M+ PGK
Sbjct: 1304 SSDL------CPQSDYDIEYMSRVPYSSAVGSLMYAMVCSRPDLSHALSVVSRYMANPGK 1357

Query: 602  QY*KAVT*VF 631
            ++ KAV  +F
Sbjct: 1358 EHWKAVQWIF 1367



 Score = 51.6 bits (122), Expect(4) = 3e-37
 Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
 Frame = +3

Query: 708  GYIDADYV-DFDQRRSTTSYVFKVAECVVS*KVELQDTSTISTTKSEYIAAVEVSNSC 878
            GY+D+D+  D D+ RS   YVF +  C VS K  LQ T  +STT++EY+A   +S +C
Sbjct: 1389 GYVDSDFAGDLDRGRSLAGYVFTIGGCAVSWKASLQATVALSTTEAEYMA---ISEAC 1443



 Score = 51.2 bits (121), Expect(4) = 3e-37
 Identities = 26/53 (49%), Positives = 33/53 (62%)
 Frame = +2

Query: 875  MWLRGLVKTFGIV*DSVWIYCGIV*DNHSVIHLAKEYMYHKRTKHIDVRYHKI 1033
            +WLRGL      V   + I+C    D+ S I L K+ M+H+RTKHIDVRYH I
Sbjct: 1447 IWLRGLYTVLCAVTSCINIFC----DSQSAICLTKDQMFHERTKHIDVRYHFI 1495



 Score = 28.9 bits (63), Expect(4) = 3e-37
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 36   MCLLKMSSYELK*SPRKWY 92
            +C LK S Y LK SPR+WY
Sbjct: 1166 VCRLKKSLYGLKQSPRQWY 1184


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  102 bits (253), Expect(3) = 3e-37
 Identities = 69/191 (36%), Positives = 105/191 (54%), Gaps = 12/191 (6%)
 Frame = +2

Query: 95   QFDSFIIKVNYIRCKYDY-IYFKQCN-DPIYLLLYMDDMLIVVARNKTHIQ*IKTRLKRK 268
            +FDSF++  ++ R KYD  +Y K  N  PIYLLLY+DDMLI  A++K  I  +K  L  +
Sbjct: 980  RFDSFMLSHSFKRSKYDSCVYIKHVNGSPIYLLLYVDDMLIA-AKSKIEITKLKKLLSSE 1038

Query: 269  FDMKNLEKKPRS*GWRSLEIEVQED----------FVYLKRTMSSRC*NGTT*MKTGHYS 418
            FDMK+L    +      L +E+  D            Y+K+ +          + T    
Sbjct: 1039 FDMKDLGSAKKI-----LVMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVST---P 1090

Query: 419  FGESLQIVL*TVSTIKGEEKEMYRVPYANALGSLMYAMICTMPDLAHAVSTVSRFMSKPG 598
                 ++      +   E + M RVPY++A+GSLMYAM+C+ PDL++A+S VSR+MS PG
Sbjct: 1091 IAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPG 1150

Query: 599  KQY*KAVT*VF 631
            K++ + V  +F
Sbjct: 1151 KEHWRVVQWIF 1161



 Score = 55.8 bits (133), Expect(3) = 3e-37
 Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
 Frame = +3

Query: 708  GYIDADYV-DFDQRRSTTSYVFKVAECVVS*KVELQDTSTISTTKSEYIAAVE 863
            GY+D+DY  D D+RRS T YVF +  C VS +  LQ    +STT++EY+A  E
Sbjct: 1183 GYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICE 1235



 Score = 48.9 bits (115), Expect(3) = 3e-37
 Identities = 21/51 (41%), Positives = 33/51 (64%)
 Frame = +2

Query: 875  MWLRGLVKTFGIV*DSVWIYCGIV*DNHSVIHLAKEYMYHKRTKHIDVRYH 1027
            +WL+GL      V   + ++C    D+ S I+L K+ M+H+RTKHID++YH
Sbjct: 1241 IWLKGLYAELSGVESCISLHC----DSQSAIYLTKDQMFHERTKHIDIKYH 1287


>gb|KYP53032.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1305

 Score =  103 bits (257), Expect(4) = 4e-37
 Identities = 76/188 (40%), Positives = 105/188 (55%), Gaps = 17/188 (9%)
 Frame = +2

Query: 95   QFDSFIIKVNYIRCKYDYI-YFKQC--NDPIYLLLYMDDMLIVVARNKTHIQ*IKTRLKR 265
            +FDSFII + Y R   D+  Y+ +   ND I LLLY+DDML VV  NK  IQ +K +L R
Sbjct: 950  RFDSFIISLGYNRLSSDHCTYYNRFDDNDFIILLLYVDDML-VVGPNKDQIQELKAQLAR 1008

Query: 266  KFDMKNLEKKPRS*G------------WRSLEIEVQEDFVY--LKRTMSSRC*NGTT*MK 403
            +FDMK+L    +  G            W S     Q++++   L+R     C   +T + 
Sbjct: 1009 EFDMKDLGPANKILGMQIHRDRKNRRIWLS-----QKNYLLKVLRRFNMQDCKPISTPLP 1063

Query: 404  TGHYSFGESLQIVL*TVSTIKGEEKEMYRVPYANALGSLMYAMICTMPDLAHAVSTVSRF 583
              +Y    S+        + + E  EM RVPYA+A+GSLMYAMICT PD+A AV  VSRF
Sbjct: 1064 V-NYKLSSSMS------PSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGAVSRF 1116

Query: 584  MSKPGKQY 607
            M+ PG+++
Sbjct: 1117 MADPGREH 1124



 Score = 50.8 bits (120), Expect(4) = 4e-37
 Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
 Frame = +3

Query: 621  RECLHYL*RAARLDLVFQKLETEKPGVL*GYIDADYV-DFDQRRSTTSYVFKVAECVVS* 797
            +  L Y+   + + L F+  E     V+ GY+D+D+  D D+R+STT YVF +A   VS 
Sbjct: 1129 KRILRYIKGTSDVALCFEGSEF----VVRGYVDSDFAGDLDKRKSTTGYVFTLAGGAVSW 1184

Query: 798  KVELQDTSTISTTKSEYIAAVE 863
              +LQ    +STT++EY+AA +
Sbjct: 1185 LSKLQTVVALSTTEAEYMAATQ 1206



 Score = 47.8 bits (112), Expect(4) = 4e-37
 Identities = 20/66 (30%), Positives = 40/66 (60%)
 Frame = +2

Query: 875  MWLRGLVKTFGIV*DSVWIYCGIV*DNHSVIHLAKEYMYHKRTKHIDVRYHKI*Q*INKR 1054
            +W++ L++  G   + + +YC    D+ S +H+A+   +H RTKHI V+YH + + + + 
Sbjct: 1212 IWIQRLLEELGHKQEKITVYC----DSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEG 1267

Query: 1055 LIDLVK 1072
             +D+ K
Sbjct: 1268 KVDMQK 1273



 Score = 24.3 bits (51), Expect(4) = 4e-37
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +3

Query: 15   FKKDKKT--MCLLKMSSYELK*SPRKWY 92
            FK+  K   +C L  S Y LK +PR WY
Sbjct: 921  FKEQGKENLVCRLTKSLYGLKQAPRCWY 948


>gb|KYP36645.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1256

 Score =  104 bits (259), Expect(4) = 6e-37
 Identities = 78/189 (41%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
 Frame = +2

Query: 95   QFDSFIIKVNYIRCKYDYI-YFKQC--NDPIYLLLYMDDMLIVVARNKTHIQ*IKTRLKR 265
            +FDSFII + Y R   D+  Y+ +   ND I LLLY+DDML VV  NK  IQ +K +L R
Sbjct: 901  RFDSFIISLGYNRLSSDHCTYYNRFDDNDFIILLLYVDDML-VVGPNKDQIQELKAQLAR 959

Query: 266  KFDMKNL-------------EKKPRS*GWRSLEIEVQEDFVY--LKRTMSSRC*NGTT*M 400
            +FDMK+L             +KK R   W S     Q +++   L+R     C   +T +
Sbjct: 960  EFDMKDLGPANKILGMQIHRDKKDRKI-WLS-----QRNYLLKVLRRFNMQDCKPISTPL 1013

Query: 401  KTGHYSFGESLQIVL*TVSTIKGEEKEMYRVPYANALGSLMYAMICTMPDLAHAVSTVSR 580
               +Y    S+        + + E  EM RVPYA+A+GSLMYAMICT PD+A AV  VSR
Sbjct: 1014 PV-NYKLSSSMS------PSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGAVSR 1066

Query: 581  FMSKPGKQY 607
            FM+ PG+++
Sbjct: 1067 FMADPGREH 1075



 Score = 50.1 bits (118), Expect(4) = 6e-37
 Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
 Frame = +3

Query: 708  GYIDADYV-DFDQRRSTTSYVFKVAECVVS*KVELQDTSTISTTKSEYIAAVE 863
            GY+D+D+  D D+R+STT YVF +A   VS   +LQ    +STT++EY+AA +
Sbjct: 1105 GYVDSDFAGDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQ 1157



 Score = 47.4 bits (111), Expect(4) = 6e-37
 Identities = 19/66 (28%), Positives = 40/66 (60%)
 Frame = +2

Query: 875  MWLRGLVKTFGIV*DSVWIYCGIV*DNHSVIHLAKEYMYHKRTKHIDVRYHKI*Q*INKR 1054
            +W++ L++  G   + + +YC    D+ S +H+A+   +H RTKHI ++YH + + + + 
Sbjct: 1163 IWIQRLLEELGHKQEKITVYC----DSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEG 1218

Query: 1055 LIDLVK 1072
             +D+ K
Sbjct: 1219 KVDMQK 1224



 Score = 24.3 bits (51), Expect(4) = 6e-37
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +3

Query: 15  FKKDKKT--MCLLKMSSYELK*SPRKWY 92
           FK+  K   +C L  S Y LK +PR WY
Sbjct: 872 FKEQGKENLVCRLTKSLYGLKQAPRCWY 899


>gb|KYP42748.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1305

 Score =  103 bits (257), Expect(4) = 9e-37
 Identities = 76/188 (40%), Positives = 105/188 (55%), Gaps = 17/188 (9%)
 Frame = +2

Query: 95   QFDSFIIKVNYIRCKYDYI-YFKQC--NDPIYLLLYMDDMLIVVARNKTHIQ*IKTRLKR 265
            +FDSFII + Y R   D+  Y+ +   ND I LLLY+DDML VV  NK  IQ +K +L R
Sbjct: 950  RFDSFIISLGYNRLSSDHCTYYNRFDDNDFIILLLYVDDML-VVGPNKDQIQELKAQLAR 1008

Query: 266  KFDMKNLEKKPRS*G------------WRSLEIEVQEDFVY--LKRTMSSRC*NGTT*MK 403
            +FDMK+L    +  G            W S     Q++++   L+R     C   +T + 
Sbjct: 1009 EFDMKDLGPANKILGMQIHRDRKNRRIWLS-----QKNYLLKVLRRFNMQDCKPISTPLP 1063

Query: 404  TGHYSFGESLQIVL*TVSTIKGEEKEMYRVPYANALGSLMYAMICTMPDLAHAVSTVSRF 583
              +Y    S+        + + E  EM RVPYA+A+GSLMYAMICT PD+A AV  VSRF
Sbjct: 1064 V-NYKLSSSMS------PSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGAVSRF 1116

Query: 584  MSKPGKQY 607
            M+ PG+++
Sbjct: 1117 MADPGREH 1124



 Score = 50.1 bits (118), Expect(4) = 9e-37
 Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
 Frame = +3

Query: 708  GYIDADYV-DFDQRRSTTSYVFKVAECVVS*KVELQDTSTISTTKSEYIAAVE 863
            GY+D+D+  D D+R+STT YVF +A   VS   +LQ    +STT++EY+AA +
Sbjct: 1154 GYVDSDFAGDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQ 1206



 Score = 47.4 bits (111), Expect(4) = 9e-37
 Identities = 19/66 (28%), Positives = 40/66 (60%)
 Frame = +2

Query: 875  MWLRGLVKTFGIV*DSVWIYCGIV*DNHSVIHLAKEYMYHKRTKHIDVRYHKI*Q*INKR 1054
            +W++ L++  G   + + +YC    D+ S +H+A+   +H RTKHI ++YH + + + + 
Sbjct: 1212 IWIQRLLEELGHKQEKITVYC----DSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEG 1267

Query: 1055 LIDLVK 1072
             +D+ K
Sbjct: 1268 KVDMQK 1273



 Score = 24.3 bits (51), Expect(4) = 9e-37
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +3

Query: 15   FKKDKKT--MCLLKMSSYELK*SPRKWY 92
            FK+  K   +C L  S Y LK +PR WY
Sbjct: 921  FKEQGKENLVCRLTKSLYGLKQAPRCWY 948


>gb|KYP67664.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1256

 Score =  103 bits (257), Expect(4) = 9e-37
 Identities = 76/188 (40%), Positives = 105/188 (55%), Gaps = 17/188 (9%)
 Frame = +2

Query: 95   QFDSFIIKVNYIRCKYDYI-YFKQC--NDPIYLLLYMDDMLIVVARNKTHIQ*IKTRLKR 265
            +FDSFII + Y R   D+  Y+ +   ND I LLLY+DDML VV  NK  IQ +K +L R
Sbjct: 901  RFDSFIISLGYNRLSSDHCTYYNRFDDNDFIILLLYVDDML-VVGPNKDQIQELKAQLAR 959

Query: 266  KFDMKNLEKKPRS*G------------WRSLEIEVQEDFVY--LKRTMSSRC*NGTT*MK 403
            +FDMK+L    +  G            W S     Q++++   L+R     C   +T + 
Sbjct: 960  EFDMKDLGPANKILGMQIHRDRKNRRIWLS-----QKNYLLKVLRRFNMQDCKPISTPLP 1014

Query: 404  TGHYSFGESLQIVL*TVSTIKGEEKEMYRVPYANALGSLMYAMICTMPDLAHAVSTVSRF 583
              +Y    S+        + + E  EM RVPYA+A+GSLMYAMICT PD+A AV  VSRF
Sbjct: 1015 V-NYKLSSSMS------PSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGAVSRF 1067

Query: 584  MSKPGKQY 607
            M+ PG+++
Sbjct: 1068 MADPGREH 1075



 Score = 50.1 bits (118), Expect(4) = 9e-37
 Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
 Frame = +3

Query: 708  GYIDADYV-DFDQRRSTTSYVFKVAECVVS*KVELQDTSTISTTKSEYIAAVE 863
            GY+D+D+  D D+R+STT YVF +A   VS   +LQ    +STT++EY+AA +
Sbjct: 1105 GYVDSDFAGDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQ 1157



 Score = 47.4 bits (111), Expect(4) = 9e-37
 Identities = 19/66 (28%), Positives = 40/66 (60%)
 Frame = +2

Query: 875  MWLRGLVKTFGIV*DSVWIYCGIV*DNHSVIHLAKEYMYHKRTKHIDVRYHKI*Q*INKR 1054
            +W++ L++  G   + + +YC    D+ S +H+A+   +H RTKHI ++YH + + + + 
Sbjct: 1163 IWIQRLLEELGHKQEKITVYC----DSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEG 1218

Query: 1055 LIDLVK 1072
             +D+ K
Sbjct: 1219 KVDMQK 1224



 Score = 24.3 bits (51), Expect(4) = 9e-37
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +3

Query: 15  FKKDKKT--MCLLKMSSYELK*SPRKWY 92
           FK+  K   +C L  S Y LK +PR WY
Sbjct: 872 FKEQGKENLVCRLTKSLYGLKQAPRCWY 899


>gb|KYP38095.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1256

 Score =  103 bits (257), Expect(4) = 9e-37
 Identities = 76/188 (40%), Positives = 105/188 (55%), Gaps = 17/188 (9%)
 Frame = +2

Query: 95   QFDSFIIKVNYIRCKYDYI-YFKQC--NDPIYLLLYMDDMLIVVARNKTHIQ*IKTRLKR 265
            +FDSFII + Y R   D+  Y+ +   ND I LLLY+DDML VV  NK  IQ +K +L R
Sbjct: 901  RFDSFIISLGYNRLSSDHCTYYNRFDDNDFIILLLYVDDML-VVGPNKDQIQELKAQLAR 959

Query: 266  KFDMKNLEKKPRS*G------------WRSLEIEVQEDFVY--LKRTMSSRC*NGTT*MK 403
            +FDMK+L    +  G            W S     Q++++   L+R     C   +T + 
Sbjct: 960  EFDMKDLGPANKILGMQIHRDRKNRRIWLS-----QKNYLLKVLRRFNMQDCKPISTPLP 1014

Query: 404  TGHYSFGESLQIVL*TVSTIKGEEKEMYRVPYANALGSLMYAMICTMPDLAHAVSTVSRF 583
              +Y    S+        + + E  EM RVPYA+A+GSLMYAMICT PD+A AV  VSRF
Sbjct: 1015 V-NYKLSSSMS------PSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGAVSRF 1067

Query: 584  MSKPGKQY 607
            M+ PG+++
Sbjct: 1068 MADPGREH 1075



 Score = 50.1 bits (118), Expect(4) = 9e-37
 Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
 Frame = +3

Query: 708  GYIDADYV-DFDQRRSTTSYVFKVAECVVS*KVELQDTSTISTTKSEYIAAVE 863
            GY+D+D+  D D+R+STT YVF +A   VS   +LQ    +STT++EY+AA +
Sbjct: 1105 GYVDSDFAGDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQ 1157



 Score = 47.4 bits (111), Expect(4) = 9e-37
 Identities = 19/66 (28%), Positives = 40/66 (60%)
 Frame = +2

Query: 875  MWLRGLVKTFGIV*DSVWIYCGIV*DNHSVIHLAKEYMYHKRTKHIDVRYHKI*Q*INKR 1054
            +W++ L++  G   + + +YC    D+ S +H+A+   +H RTKHI ++YH + + + + 
Sbjct: 1163 IWIQRLLEELGHKQEKITVYC----DSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEG 1218

Query: 1055 LIDLVK 1072
             +D+ K
Sbjct: 1219 KVDMQK 1224



 Score = 24.3 bits (51), Expect(4) = 9e-37
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +3

Query: 15  FKKDKKT--MCLLKMSSYELK*SPRKWY 92
           FK+  K   +C L  S Y LK +PR WY
Sbjct: 872 FKEQGKENLVCRLTKSLYGLKQAPRCWY 899


>pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis thaliana
           retrotransposon Ta1 (fragment)
 emb|CAA37917.1| reverse transcriptase, partial [Arabidopsis thaliana]
          Length = 587

 Score = 84.0 bits (206), Expect(5) = 1e-35
 Identities = 60/180 (33%), Positives = 101/180 (56%), Gaps = 5/180 (2%)
 Frame = +2

Query: 95  QFDSFIIKVNYIRCKYDY-IYFKQCNDP--IYLLLYMDDMLIVVARNKTHIQ*IKTRLKR 265
           +F+ F+I  N+IR ++D  +Y KQ  +   +YLLLY+DDMLI   +NK+ I  +K +L  
Sbjct: 233 RFNRFMIDQNFIRSEHDACVYVKQVTEQEHLYLLLYVDDMLIA-GKNKSEINKVKEQLSM 291

Query: 266 KFDMKNLEKKPRS*GWRSLEIEVQEDFVYLKRTMSSRC*NGTT*MKTGHYSFGESLQIVL 445
           +F+MK++    R  G   ++I        L+ + +S   N              S     
Sbjct: 292 EFEMKDMGPASRILG---IDIIRDRKNGVLRMSQASYIHNVVQRFNMAEAKVTRSPIGAH 348

Query: 446 *TVSTIKGEEK--EMYRVPYANALGSLMYAMICTMPDLAHAVSTVSRFMSKPGKQY*KAV 619
             ++ ++ +++  +   VPYA+A+GS+MYAMI T PDLA+ +  VSR+M++PG  + +AV
Sbjct: 349 FKLAAVRDDDECIDNNVVPYASAVGSIMYAMIGTRPDLAYDICLVSRYMARPGSIHWEAV 408



 Score = 55.5 bits (132), Expect(5) = 1e-35
 Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
 Frame = +3

Query: 630 LHYL*RAARLDLVFQKLETEKPGVL*GYIDADYV-DFDQRRSTTSYVFKVAECVVS*KVE 806
           L Y+  +  L+LVF K   EK   + GY D+DY  D D+RRS + YVF V    VS K  
Sbjct: 412 LRYMRGSQDLNLVFTK---EKEFRVTGYCDSDYAADLDRRRSVSGYVFTVGGNTVSWKAN 468

Query: 807 LQDTSTISTTKSEYIAAVEVS 869
           LQ  + +STT++E++A  E +
Sbjct: 469 LQSVTALSTTEAEFMALTEAA 489



 Score = 52.8 bits (125), Expect(5) = 1e-35
 Identities = 26/66 (39%), Positives = 42/66 (63%)
 Frame = +2

Query: 875  MWLRGLVKTFGIV*DSVWIYCGIV*DNHSVIHLAKEYMYHKRTKHIDVRYHKI*Q*INKR 1054
            +W++GL+K  G+  D V ++C    D+ S I L+K   +H+RTKHIDVRY+ I   +   
Sbjct: 493  LWIKGLMKDLGLEQDKVTLWC----DSQSAICLSKNSTHHERTKHIDVRYNFIRDVVEAG 548

Query: 1055 LIDLVK 1072
             +D++K
Sbjct: 549  DVDVLK 554



 Score = 27.7 bits (60), Expect(5) = 1e-35
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 27  KKTMCLLKMSSYELK*SPRKW 89
           K  +CLLK   Y LK SPR+W
Sbjct: 210 KNKVCLLKKLLYGLKQSPRQW 230



 Score = 21.6 bits (44), Expect(5) = 1e-35
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 1051 EVDRFGKEYKKNSANMMTKTISVKKF 1128
            +VD       +N A+ +TK+I V KF
Sbjct: 549  DVDVLKIHTSRNPADALTKSIPVNKF 574


>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score = 92.8 bits (229), Expect(4) = 1e-35
 Identities = 71/186 (38%), Positives = 99/186 (53%), Gaps = 15/186 (8%)
 Frame = +2

Query: 95   QFDSFIIKVNYIRCKYD-YIYFKQCNDP--IYLLLYMDDMLIVVARNKTHIQ*IKTRLKR 265
            +FDSFI+ + Y R   D   YFK+      + LLLY+DDML V   NK HI  +K +L R
Sbjct: 943  RFDSFIMCLGYNRLNADPCAYFKRFGKDNFVILLLYVDDML-VAGPNKDHIDELKAQLAR 1001

Query: 266  KFDMKNLEKKP--------RS*GWRSLEIEVQEDFVYLKRTMSSRC*NGTT*MKTGHYSF 421
            +F+MK+L            R  G R + +  +    YLK+ +S               S 
Sbjct: 1002 EFEMKDLGPANKILGMQIHRDRGNRKIWLSQKN---YLKKILSRFSMQDCK-------SI 1051

Query: 422  GESLQIVL*TVSTIKGEEKE----MYRVPYANALGSLMYAMICTMPDLAHAVSTVSRFMS 589
               L I L   S++    +E    M RVPYA+A+GSLM+AMICT PD+A AV  VSR+M+
Sbjct: 1052 STPLPINLKVSSSMSPSNEEGRMEMSRVPYASAVGSLMFAMICTRPDIAQAVGVVSRYMA 1111

Query: 590  KPGKQY 607
             PG+++
Sbjct: 1112 NPGREH 1117



 Score = 53.9 bits (128), Expect(4) = 1e-35
 Identities = 28/58 (48%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
 Frame = +3

Query: 699  VL*GYIDADYV-DFDQRRSTTSYVFKVAECVVS*KVELQDTSTISTTKSEYIAAVEVS 869
            ++ GY+D+DY  D D+ +STT YVFKVA   VS   +LQ     STT++EY+AA + S
Sbjct: 1144 IINGYVDSDYAGDLDKSKSTTGYVFKVAGGAVSWVSKLQAVVATSTTEAEYVAATQAS 1201



 Score = 47.8 bits (112), Expect(4) = 1e-35
 Identities = 24/66 (36%), Positives = 40/66 (60%)
 Frame = +2

Query: 875  MWLRGLVKTFGIV*DSVWIYCGIV*DNHSVIHLAKEYMYHKRTKHIDVRYHKI*Q*INKR 1054
            +WL+ L++  G   + V ++C    D+ S +HLA+   +H RTKHI V+YH I + + + 
Sbjct: 1205 IWLKMLLEELGHKQEFVSLFC----DSQSALHLARNPAFHSRTKHIRVQYHFIREKVKEG 1260

Query: 1055 LIDLVK 1072
             +DL K
Sbjct: 1261 TVDLQK 1266



 Score = 26.9 bits (58), Expect(4) = 1e-35
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 18  KKDKKTMCLLKMSSYELK*SPRKWY 92
           K+++  +C L  S Y LK +PR WY
Sbjct: 917 KENQNLVCRLNKSLYGLKQAPRCWY 941


>ref|XP_008796700.1| PREDICTED: uncharacterized protein LOC103712082 [Phoenix dactylifera]
          Length = 2199

 Score = 97.8 bits (242), Expect(4) = 6e-35
 Identities = 65/192 (33%), Positives = 104/192 (54%), Gaps = 13/192 (6%)
 Frame = +2

Query: 95   QFDSFIIKVNYIRCKYDY-IYFKQCN--DPIYLLLYMDDMLIVVARNKTHIQ*IKTRLKR 265
            +FD+F++   + RC++D  +Y K  +  D +YLLLYMDDMLI  +R+   +  +K  L  
Sbjct: 1065 RFDAFVLSFGFSRCEHDSCVYVKDVDEDDVLYLLLYMDDMLIA-SRSADVVNGLKIALSA 1123

Query: 266  KFDMKNLEKKPRS*GWRSLEIEVQEDFV----------YLKRTMSSRC*NGTT*MKTGHY 415
            +F+MK+L    +      L +E+ +D            Y+++ +      G    K    
Sbjct: 1124 EFEMKDLGPSRKI-----LRMEICKDRCKSILHLSLRGYIQKVLERF---GMNEAKPVGT 1175

Query: 416  SFGESLQIVL*TVSTIKGEEKEMYRVPYANALGSLMYAMICTMPDLAHAVSTVSRFMSKP 595
                 + +       I  E+  M RVPYA+ +GS+MYAM+C  PD+AHAVS VSR+M+ P
Sbjct: 1176 PLASQMTLFKLQCPQIDEEKGYMERVPYASVVGSVMYAMVCCRPDIAHAVSQVSRYMANP 1235

Query: 596  GKQY*KAVT*VF 631
            GK++ KA+  +F
Sbjct: 1236 GKEHWKALKWIF 1247



 Score = 48.5 bits (114), Expect(4) = 6e-35
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 10/88 (11%)
 Frame = +3

Query: 636  YL*RAARLDLVF---------QKLETEKPGVL*GYIDADYV-DFDQRRSTTSYVFKVAEC 785
            YL    RL L+F           + +E  G L  ++DA++V D D +RST  YVF +   
Sbjct: 1249 YLQGTRRLGLIFGQQYGLRRNSNVSSEFSGPLEEFVDANFVGDLDTKRSTIGYVFSMYSG 1308

Query: 786  VVS*KVELQDTSTISTTKSEYIAAVEVS 869
             VS +  LQ  + +STT++EYI   EV+
Sbjct: 1309 PVSWRSTLQSITALSTTEAEYIGITEVA 1336



 Score = 42.0 bits (97), Expect(4) = 6e-35
 Identities = 22/64 (34%), Positives = 38/64 (59%)
 Frame = +2

Query: 881  LRGLVKTFGIV*DSVWIYCGIV*DNHSVIHLAKEYMYHKRTKHIDVRYHKI*Q*INKRLI 1060
            L+ L++  G+   +V ++     D+ S + L +  +YH RT HID+RYHKI + + +  +
Sbjct: 1342 LKRLIQEMGVNQSTVVLHS----DSQSALQLVQNPVYHARTNHIDMRYHKIRELVEEGEV 1397

Query: 1061 DLVK 1072
             LVK
Sbjct: 1398 MLVK 1401



 Score = 30.8 bits (68), Expect(4) = 6e-35
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +3

Query: 27   KKTMCLLKMSSYELK*SPRKWY 92
            +K +CLLK S Y L  SPR+WY
Sbjct: 1042 EKKVCLLKRSLYGLTQSPRQWY 1063


>gb|ABG22121.1| polyprotein, partial [Solanum melongena]
          Length = 361

 Score = 95.9 bits (237), Expect(3) = 4e-34
 Identities = 68/188 (36%), Positives = 102/188 (54%), Gaps = 13/188 (6%)
 Frame = +2

Query: 95  QFDSFIIKVNYIRCKYDY-IYFKQCNDP--IYLLLYMDDMLIVVARNKTHIQ*IKTRLKR 265
           QFD F+    Y R KYD+ +YF +  +   +YLLLY+DDMLI  A+++  I  +K +L +
Sbjct: 51  QFDKFMQDQRYTRSKYDHCVYFHKLQNGSYVYLLLYVDDMLIA-AKSQFEIDRLKAQLSK 109

Query: 266 KFDMKNLEKKPRS*GWRSLEIEVQEDFV----------YLKRTMSSRC*NGTT*MKTGHY 415
           +F+MK+L +  +  G     +E+  D            YLK+ +     N  +  K    
Sbjct: 110 EFEMKDLGEAKKILG-----MEISRDRQRGKLCLTQKQYLKKVLQRFGINDDS--KPVST 162

Query: 416 SFGESLQIVL*TVSTIKGEEKEMYRVPYANALGSLMYAMICTMPDLAHAVSTVSRFMSKP 595
                L++          E + M +VPYANA+GSLMYAM+CT  D++ AVS VSR+M  P
Sbjct: 163 PLAPHLKLSSQLSPKTDEEREYMAKVPYANAVGSLMYAMVCTRSDISQAVSVVSRYMHDP 222

Query: 596 GKQY*KAV 619
           GK + +AV
Sbjct: 223 GKGHWQAV 230



 Score = 55.8 bits (133), Expect(3) = 4e-34
 Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
 Frame = +3

Query: 630 LHYL*RAARLDLVFQKLETEKPGVL*GYIDADYV-DFDQRRSTTSYVFKVAECVVS*KVE 806
           L Y+     + LVF++ ++    V+ GY D+DY  D D+RRSTT Y+F +A+  VS K  
Sbjct: 234 LRYIKNTVDIGLVFEQDKSLGSCVV-GYCDSDYAGDLDKRRSTTGYLFTLAKGPVSWKST 292

Query: 807 LQDTSTISTTKSEYIAAVE 863
           LQ T  +STT++EY+A  E
Sbjct: 293 LQATVALSTTEAEYMAITE 311



 Score = 44.7 bits (104), Expect(3) = 4e-34
 Identities = 21/49 (42%), Positives = 31/49 (63%)
 Frame = +2

Query: 875  MWLRGLVKTFGIV*DSVWIYCGIV*DNHSVIHLAKEYMYHKRTKHIDVR 1021
            +WL GL++  G+    + ++     D+ S IHLAK  ++H RTKHIDVR
Sbjct: 317  IWLHGLLEELGVGQKHLMVHS----DSQSAIHLAKNQVFHARTKHIDVR 361


>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1138

 Score = 85.5 bits (210), Expect(3) = 4e-32
 Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 17/196 (8%)
 Frame = +2

Query: 95   QFDSFII----KVNYIRCKYDYIYFKQCND--PIYLLLYMDDMLIVVARNKTHIQ*IKTR 256
            Q + F+I     + + R  YD   + +  D   IYLLLY+DDMLI  A++K+ I  +K +
Sbjct: 781  QPEGFVIPGKENLKFRRSNYDSCVYPKVVDGSAIYLLLYVDDMLIA-AKDKSEIAKLKAQ 839

Query: 257  LKRKFDMKNLEKKPRS*GWRSLEI--EVQEDFVYLK---------RTMSSRC*NGTT*MK 403
            L  +F+MK+L    +  G   +EI  E     +YL          R  +       +   
Sbjct: 840  LSSEFEMKDLGAAKKILG---IEITKERHSGKLYLSQKGYIEKVLRRFNMHDAKPVSTPL 896

Query: 404  TGHYSFGESLQIVL*TVSTIKGEEKEMYRVPYANALGSLMYAMICTMPDLAHAVSTVSRF 583
              H+     L            + + M RVPY++ +GSLMYAM+C+ PDL+HA+S VSR+
Sbjct: 897  AAHFRLSSDL------CPQSDYDIEYMSRVPYSSVVGSLMYAMVCSRPDLSHALSVVSRY 950

Query: 584  MSKPGKQY*KAVT*VF 631
            M+ PGK++ KAV  +F
Sbjct: 951  MANPGKEHWKAVQWIF 966



 Score = 54.3 bits (129), Expect(3) = 4e-32
 Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
 Frame = +3

Query: 708  GYIDADYV-DFDQRRSTTSYVFKVAECVVS*KVELQDTSTISTTKSEYIAAVEVSNSC 878
            GY+D+D+  D D+RRS   YVF +  C VS K  LQ T  +STT++EY+A   +S +C
Sbjct: 988  GYVDSDFAGDLDRRRSLAGYVFTIGGCAVSWKANLQATVALSTTEAEYMA---ISEAC 1042



 Score = 49.7 bits (117), Expect(3) = 4e-32
 Identities = 26/53 (49%), Positives = 33/53 (62%)
 Frame = +2

Query: 875  MWLRGLVKTFGIV*DSVWIYCGIV*DNHSVIHLAKEYMYHKRTKHIDVRYHKI 1033
            +WLRGL      V   + I+C    D+ S I L K+ M+H+RTKHIDVRYH I
Sbjct: 1046 IWLRGLYTELCGVTSCINIFC----DSQSAICLTKDQMFHERTKHIDVRYHFI 1094


>gb|KYP42039.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 394

 Score =  134 bits (338), Expect = 9e-31
 Identities = 113/337 (33%), Positives = 157/337 (46%), Gaps = 24/337 (7%)
 Frame = +2

Query: 95   QFDSFIIKVNYIRCKYD-YIYFKQCNDP--IYLLLYMDDMLIVVARNKTHIQ*IKTRLKR 265
            +FDSF+I   Y R KYD  IYF+Q  D   IYLLLY+DDMLI  +R+K+ I  +K +L  
Sbjct: 36   KFDSFMIGQGYSRSKYDDCIYFQQFPDGTFIYLLLYVDDMLIA-SRDKSLISKLKAQLNN 94

Query: 266  KFDMKNLEKKPRS*GWR-SLEIEVQEDFV----YLKRTMSSRC*NGTT*MKT---GHYSF 421
            +F+MK L    +  G     + +V + F+    Y++R +     N    + T    H+  
Sbjct: 95   EFEMKELGAAKKILGMEIHRDRQVGKLFLSQQKYIERLLDRFNMNNCKPVSTPLAAHFKL 154

Query: 422  GESLQIVL*TVSTIKGEEKEMYRVPYANALGSLMYAMICTMPDLAHAVSTVSRFMSKPGK 601
               L          K E + M  VPYA+A+GSLMYAM+CT PDLA+AVS VSR+M  PGK
Sbjct: 155  SSDL------CPQTKEEMERMSHVPYASAVGSLMYAMVCTRPDLAYAVSMVSRYMHNPGK 208

Query: 602  QY*KAVT*-------------VFTLSMKGCETRLGVSEIGNGEAWXXXXXXXXXXXXF*S 742
             +  AV               VF  +        G  +   G                 +
Sbjct: 209  DHWSAVKWIFRYLKGTSNIGLVFDRNKATTNNVAGFVDSDYGGDLDRRRSLSGYIFTLCN 268

Query: 743  TKIYNKLCIQSSRVCCQLEGRIARYIDYFNNKVRIYSCS*GI*FMWLRGLVKTFGIV*DS 922
            + I  K  +QS       E   A Y+                  +W+RGLVK  G+  D 
Sbjct: 269  SAISWKASLQSIAALSTTE---AEYVSATEGVKEA---------LWIRGLVKELGLTQDV 316

Query: 923  VWIYCGIV*DNHSVIHLAKEYMYHKRTKHIDVRYHKI 1033
            + ++C    D+ S IHL K   YH +TKHIDV++H I
Sbjct: 317  LTVFC----DSQSAIHLTKNSRYHDKTKHIDVKHHFI 349


>gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1032

 Score =  134 bits (338), Expect(2) = 4e-30
 Identities = 113/337 (33%), Positives = 157/337 (46%), Gaps = 24/337 (7%)
 Frame = +2

Query: 95   QFDSFIIKVNYIRCKYD-YIYFKQCNDP--IYLLLYMDDMLIVVARNKTHIQ*IKTRLKR 265
            +FDSF+I   Y R KYD  IYF+Q  D   IYLLLY+DDMLI  +R+K+ I  +K +L  
Sbjct: 674  KFDSFMIGQGYSRSKYDDCIYFQQFPDGTFIYLLLYVDDMLIA-SRDKSLISKLKAQLNN 732

Query: 266  KFDMKNLEKKPRS*GWR-SLEIEVQEDFV----YLKRTMSSRC*NGTT*MKT---GHYSF 421
            +F+MK L    +  G     + +V + F+    Y++R +     N    + T    H+  
Sbjct: 733  EFEMKELGAAKKILGMEIHRDRQVGKLFLSQQKYIERLLDRFNMNNCKPVSTPLAAHFKL 792

Query: 422  GESLQIVL*TVSTIKGEEKEMYRVPYANALGSLMYAMICTMPDLAHAVSTVSRFMSKPGK 601
               L          K E + M  VPYA+A+GSLMYAM+CT PDLA+AVS VSR+M  PGK
Sbjct: 793  SSDL------CPQTKEEMERMSHVPYASAVGSLMYAMVCTRPDLAYAVSMVSRYMHNPGK 846

Query: 602  QY*KAVT*-------------VFTLSMKGCETRLGVSEIGNGEAWXXXXXXXXXXXXF*S 742
             +  AV               VF  +        G  +   G                 +
Sbjct: 847  DHWSAVKWIFRYLKGTSNIGLVFDRNKATTNNVAGFVDSDYGGDLDRRRSLSGYIFTLCN 906

Query: 743  TKIYNKLCIQSSRVCCQLEGRIARYIDYFNNKVRIYSCS*GI*FMWLRGLVKTFGIV*DS 922
            + I  K  +QS       E   A Y+                  +W+RGLVK  G+  D 
Sbjct: 907  SAISWKASLQSIAALSTTE---AEYVSATEGVKEA---------LWIRGLVKELGLTQDV 954

Query: 923  VWIYCGIV*DNHSVIHLAKEYMYHKRTKHIDVRYHKI 1033
            + ++C    D+ S IHL K   YH +TKHIDV++H I
Sbjct: 955  LTVFC----DSQSAIHLTKNSRYHDKTKHIDVKHHFI 987



 Score = 27.7 bits (60), Expect(2) = 4e-30
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 36  MCLLKMSSYELK*SPRKWY 92
           +C LK S Y LK +PR+WY
Sbjct: 654 VCQLKKSLYGLKQAPRQWY 672


>gb|KYP53356.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 503

 Score =  134 bits (338), Expect(2) = 4e-30
 Identities = 113/337 (33%), Positives = 157/337 (46%), Gaps = 24/337 (7%)
 Frame = +2

Query: 95   QFDSFIIKVNYIRCKYD-YIYFKQCNDP--IYLLLYMDDMLIVVARNKTHIQ*IKTRLKR 265
            +FDSF+I   Y R KYD  IYF+Q  D   IYLLLY+DDMLI  +R+K+ I  +K +L  
Sbjct: 145  KFDSFMIGQGYSRSKYDDCIYFQQFPDGTFIYLLLYVDDMLIA-SRDKSLISKLKAQLNN 203

Query: 266  KFDMKNLEKKPRS*GWR-SLEIEVQEDFV----YLKRTMSSRC*NGTT*MKT---GHYSF 421
            +F+MK L    +  G     + +V + F+    Y++R +     N    + T    H+  
Sbjct: 204  EFEMKELGAAKKILGMEIHRDRQVGKLFLSQQKYIERLLDRFNMNNCKPVSTPLAAHFKL 263

Query: 422  GESLQIVL*TVSTIKGEEKEMYRVPYANALGSLMYAMICTMPDLAHAVSTVSRFMSKPGK 601
               L          K E + M  VPYA+A+GSLMYAM+CT PDLA+AVS VSR+M  PGK
Sbjct: 264  SSDL------CPQTKEEMERMSHVPYASAVGSLMYAMVCTRPDLAYAVSMVSRYMHNPGK 317

Query: 602  QY*KAVT*-------------VFTLSMKGCETRLGVSEIGNGEAWXXXXXXXXXXXXF*S 742
             +  AV               VF  +        G  +   G                 +
Sbjct: 318  DHWSAVKWIFRYLKGTSNIGLVFDRNKATTNNVAGFVDSDYGGDLDRRRSLSGYIFTLCN 377

Query: 743  TKIYNKLCIQSSRVCCQLEGRIARYIDYFNNKVRIYSCS*GI*FMWLRGLVKTFGIV*DS 922
            + I  K  +QS       E   A Y+                  +W+RGLVK  G+  D 
Sbjct: 378  SAISWKASLQSIAALSTTE---AEYVSATEGVKEA---------LWIRGLVKELGLTQDV 425

Query: 923  VWIYCGIV*DNHSVIHLAKEYMYHKRTKHIDVRYHKI 1033
            + ++C    D+ S IHL K   YH +TKHIDV++H I
Sbjct: 426  LTVFC----DSQSAIHLTKNSRYHDKTKHIDVKHHFI 458



 Score = 27.7 bits (60), Expect(2) = 4e-30
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 36  MCLLKMSSYELK*SPRKWY 92
           +C LK S Y LK +PR+WY
Sbjct: 125 VCQLKKSLYGLKQAPRQWY 143