BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon23_contig00018804
         (965 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CDP17738.1| unnamed protein product [Coffea canephora]             99   3e-46
emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v...    99   4e-46
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...   100   1e-41
gb|ONK68196.1| uncharacterized protein A4U43_C05F8640 [Asparagus...    99   7e-39
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar...    94   9e-39
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar...    94   9e-39
gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposo...   107   1e-38
gb|KZV56298.1| hypothetical protein F511_00295 [Dorcoceras hygro...   100   5e-38
gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposo...   101   3e-37
gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposo...   100   3e-35
gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]           83   2e-34
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711...    82   2e-34
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]    87   2e-33
gb|OMO83367.1| Integrase, catalytic core [Corchorus capsularis]        78   2e-33
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]         77   3e-33
gb|KYP64673.1| Retrovirus-related Pol polyprotein from transposo...    81   3e-33
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...    84   2e-32
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]    76   5e-32
gb|PKA49510.1| Retrovirus-related Pol polyprotein from transposo...    92   9e-32
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...    83   2e-31

>emb|CDP17738.1| unnamed protein product [Coffea canephora]
          Length = 798

 Score = 99.4 bits (246), Expect(3) = 3e-46
 Identities = 53/138 (38%), Positives = 87/138 (63%), Gaps = 8/138 (5%)
 Frame = +3

Query: 459 TVHIRMHDGMVRKLLDVRYIPGFRTNIISIGALTSGGLKVTIEKDSLRVTKGSMIVMRGV 638
           ++ +R HDG  R L DVRY+P  + ++IS+G L S GL+V +    L+VT G++++++GV
Sbjct: 352 SIKLRNHDGSTRILKDVRYVPNLKRSLISLGLLESKGLEVRMRDGILKVTSGALLMLKGV 411

Query: 639 KVRNLYYLEGS------AVTQARELSVEDDHTRLWHWRLGHATKESLLGLSRQ*LIEGT- 797
           +  NLYY +GS      AV  +     + + T+LWH RLG A ++SL  L++Q L++GT 
Sbjct: 412 RKNNLYYYQGSTVVGTAAVATSSSSKKDAEATKLWHMRLGDAGEKSLQNLAKQGLLKGTK 471

Query: 798 TCNLDV*TLC-MEQERSL 848
            C L+    C +E++R +
Sbjct: 472 VCKLEFCEHCVLEKQRKV 489



 Score = 87.4 bits (215), Expect(3) = 3e-46
 Identities = 56/149 (37%), Positives = 87/149 (58%), Gaps = 3/149 (2%)
 Frame = +1

Query: 1   AALVNFELRRKEESLN--ASNGEAFVARDKGPEKQSPGNRNRSKSRDKTSGSRLSRDQCS 174
           +AL + ELR++++     A+  EA VAR +  + QS G R  SKS      SR+++D+C+
Sbjct: 204 SALYSRELRKQDKKKKKVAAADEALVARGR-QQSQSKGRRGWSKSI-----SRVAKDECA 257

Query: 175 LCKKQGHWRRECPEREKLKKESQPSQANLVRQDGNDSDFSLSVSSVAKDSDESGWILDSG 354
            C+++GHW+++CP+ +K  K  Q       + D  +SDFSL+VS +    DE  WILDS 
Sbjct: 258 FCREKGHWKKDCPKLKKKGKAPQDVNVAECKSDA-ESDFSLAVSRLTSHPDE--WILDST 314

Query: 355 ATCHICSTREYFTSFVEWHDE-VFMENES 438
            T H+   RE+F  F E     V+M N++
Sbjct: 315 CTYHMTPMREWFFEFEELDGGFVYMGNDN 343



 Score = 49.3 bits (116), Expect(3) = 3e-46
 Identities = 21/41 (51%), Positives = 28/41 (68%)
 Frame = +2

Query: 842 KFGTFIHQPVGLLDVVHMHIQGPSKVTSVEGNNYFVSFVDE 964
           KFGT IH   G+LD VH  + GP+K  S+ G  YFV+F+D+
Sbjct: 490 KFGTGIHNTKGILDYVHSDVWGPAKTPSLGGRYYFVTFIDD 530


>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 813

 Score = 99.4 bits (246), Expect(3) = 4e-46
 Identities = 55/130 (42%), Positives = 82/130 (63%), Gaps = 6/130 (4%)
 Frame = +3

Query: 459 TVHIRMHDGMVRKLLDVRYIPGFRTNIISIGALTSGGLKVTIEKDSLRVTKGSMIVMRGV 638
           ++ +R HDG  R L DVRY+P  + N+IS+GAL S GL VT+    L+ T G++++++GV
Sbjct: 267 SIKLRNHDGSTRILRDVRYVPKLKKNLISLGALESKGLVVTMRDGILKATLGALVMLKGV 326

Query: 639 KVRNLYYLEGS----AVTQARELSVED-DHTRLWHWRLGHATKESLLGLSRQ*LIEGT-T 800
              NLYY +GS     V  A   S +D +  +LWH RLGHA ++SL  L++Q L++GT  
Sbjct: 327 MKNNLYYYQGSTVVGTVAAATSSSKKDAEAAKLWHMRLGHAGEKSLQILTKQGLLKGTKA 386

Query: 801 CNLDV*TLCM 830
           C L+    C+
Sbjct: 387 CKLEFCEHCV 396



 Score = 83.2 bits (204), Expect(3) = 4e-46
 Identities = 52/150 (34%), Positives = 89/150 (59%), Gaps = 4/150 (2%)
 Frame = +1

Query: 1   AALVNFELRRKEE--SLNASNGEAFVARDKGPEKQSPGNRNRSKSRDKTSGSRLSRDQCS 174
           +AL + ELR++++  + + ++ EA V R +  + Q+   R  SKS+    G  +++D+C+
Sbjct: 117 SALYSHELRKQDKMRTKSTTSEEALVIRGR-QQSQTKERRGMSKSK----GRVVAKDECA 171

Query: 175 LCKKQGHWRRECPEREKLKKESQPSQANLVR-QDGNDSDFSLSVSSVAKDSDESGWILDS 351
            C ++GHW+++CP+ +  KKE  P  AN+   +   +SD SL V S++  S    WILDS
Sbjct: 172 FCHEKGHWKKDCPKLQ--KKEKVPQDANVAECKSDVESDISLIV-SLSASSYPDEWILDS 228

Query: 352 GATCHICSTREYFTSFVEWH-DEVFMENES 438
           G T H+C  R++F  F E     V+M N++
Sbjct: 229 GCTYHMCPIRDWFFEFQELDGGVVYMGNDN 258



 Score = 53.1 bits (126), Expect(3) = 4e-46
 Identities = 23/43 (53%), Positives = 30/43 (69%)
 Frame = +2

Query: 836 REKFGTFIHQPVGLLDVVHMHIQGPSKVTSVEGNNYFVSFVDE 964
           R KFGT IH   G+LD VH  + GP+K  S+ G +YFV+FVD+
Sbjct: 402 RVKFGTAIHNTKGILDYVHSDVWGPAKTPSIGGRHYFVTFVDD 444


>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score =  100 bits (249), Expect(3) = 1e-41
 Identities = 55/130 (42%), Positives = 82/130 (63%), Gaps = 6/130 (4%)
 Frame = +3

Query: 459 TVHIRMHDGMVRKLLDVRYIPGFRTNIISIGALTSGGLKVTIEKDSLRVTKGSMIVMRGV 638
           ++ +R HDG  R L DVRY+P  + N+IS+GAL S GL VT+    L+ T G++++++GV
Sbjct: 268 SIKLRNHDGSTRILRDVRYVPKLKKNLISLGALESKGLVVTMRDGILKATSGALVMLKGV 327

Query: 639 KVRNLYYLEGS----AVTQARELSVED-DHTRLWHWRLGHATKESLLGLSRQ*LIEGT-T 800
              NLYY +GS     V  A   S +D + T+LWH RLGHA ++SL   ++Q L++GT  
Sbjct: 328 MKNNLYYYQGSTVVGTVAAATSSSKKDAEATKLWHMRLGHAGEKSLQIFTKQGLLKGTKA 387

Query: 801 CNLDV*TLCM 830
           C L+    C+
Sbjct: 388 CKLEFCEHCV 397



 Score = 82.4 bits (202), Expect(3) = 1e-41
 Identities = 53/150 (35%), Positives = 90/150 (60%), Gaps = 4/150 (2%)
 Frame = +1

Query: 1   AALVNFELRRKEE--SLNASNGEAFVARDKGPEKQSPGNRNRSKSRDKTSGSRLSRDQCS 174
           +AL + ELR++++  + + ++ EA VAR +  + Q+   R  SKS+    G  +++D+C+
Sbjct: 118 SALYSHELRKQDKMKTKSTTSEEALVARGR-QQSQTKERRGMSKSK----GRAVAKDECA 172

Query: 175 LCKKQGHWRRECPEREKLKKESQPSQANLVRQDGNDSDFSLSVS-SVAKDSDESGWILDS 351
            C ++GHW+++CP+ +K +K  Q +     + D  +SD SL VS S +   DE  WILDS
Sbjct: 173 FCHEKGHWKKDCPKLQKKEKVLQDANVAECKSD-VESDISLIVSLSASLYLDE--WILDS 229

Query: 352 GATCHICSTREYFTSFVEWH-DEVFMENES 438
           G T H+C  R++F  F E     V+M N++
Sbjct: 230 GCTYHMCPIRDWFFEFQELDGGVVYMGNDN 259



 Score = 37.4 bits (85), Expect(3) = 1e-41
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +2

Query: 836 REKFGTFIHQPVGLLDVVHMHIQGPSKVTSV 928
           R KFGT IH   G+LD VH  + GP+K  S+
Sbjct: 403 RVKFGTAIHNTKGILDYVHSDVWGPAKTPSI 433


>gb|ONK68196.1| uncharacterized protein A4U43_C05F8640 [Asparagus officinalis]
          Length = 631

 Score = 99.4 bits (246), Expect(3) = 7e-39
 Identities = 57/139 (41%), Positives = 86/139 (61%), Gaps = 7/139 (5%)
 Frame = +1

Query: 4   ALVNFELRRK--EESLNASNGEAFVARDKGPEKQSPGNRNRSKSRDKTSGSRLSRDQCSL 177
           AL N++LRRK  E S  +++GE    R + P  +  GNR RSKSR   S  +L+++QC+ 
Sbjct: 158 ALTNYDLRRKDKETSRASTSGETLSTRGRNPYPKG-GNRGRSKSR---SHHQLAKNQCAF 213

Query: 178 CKKQGHWRRECP---EREKLKKES-QPSQANLVR-QDGNDSDFSLSVSSVAKDSDESGWI 342
           CK+Q HW+R+CP   E+E  KK+  + ++ N+ +  D +DS FSL ++      D   W+
Sbjct: 214 CKEQEHWKRDCPKLKEKENCKKKGPKANEVNVAKGDDSDDSCFSLLITPEVNHVDVLDWM 273

Query: 343 LDSGATCHICSTREYFTSF 399
           LDSGAT H+   R++F SF
Sbjct: 274 LDSGATYHVTPRRDWFASF 292



 Score = 65.1 bits (157), Expect(3) = 7e-39
 Identities = 39/112 (34%), Positives = 58/112 (51%)
 Frame = +3

Query: 459 TVHIRMHDGMVRKLLDVRYIPGFRTNIISIGALTSGGLKVTIEKDSLRVTKGSMIVMRGV 638
           TV IRMHDG+VR+L +VR++P  + NIIS+GAL +   K + E                 
Sbjct: 315 TVRIRMHDGVVRELKEVRFVPQLKKNIISVGALEAKRFKGSTE----------------- 357

Query: 639 KVRNLYYLEGSAVTQARELSVEDDHTRLWHWRLGHATKESLLGLSRQ*LIEG 794
                       ++Q      E D ++LWH+RLGH ++ SL  L +Q L++G
Sbjct: 358 ------------ISQVALAISEADISKLWHYRLGHTSENSLQILCKQRLLKG 397



 Score = 46.6 bits (109), Expect(3) = 7e-39
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
 Frame = +2

Query: 812 CVNIVHG--TREKFGTFIHQPVGLLDVVHMHIQGPSKVTSVEGNNYFVSFVDE 964
           C + V G  T+ KFGT IHQ  G++D +H  + G +K  S+ G ++FV+FVD+
Sbjct: 406 CEHCVLGKKTKVKFGTSIHQTRGIMDYMHTDVWGLTKNVSLGGQHWFVTFVDD 458


>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
          Length = 2351

 Score = 94.0 bits (232), Expect(3) = 9e-39
 Identities = 51/122 (41%), Positives = 74/122 (60%), Gaps = 4/122 (3%)
 Frame = +3

Query: 441  KVQETSTVHIRMHDGMVRKLLDVRYIPGFRTNIISIGALTSGGLKVTIEKDSLRVTKGSM 620
            +V    TV I+M DG+VR L DVR+IP  + N+IS+  L   G + + E   L+V  G++
Sbjct: 824  QVMGIGTVRIKMFDGIVRTLTDVRHIPEMKKNLISLSTLDKKGFRYSAEGGVLKVFSGAL 883

Query: 621  IVMRGVKVRNLYYLEGSAVTQARELSVED----DHTRLWHWRLGHATKESLLGLSRQ*LI 788
             V+RG   R LY+L+GS+VT    +S  D    D T+LWH RLGH ++  L  LS++ L+
Sbjct: 884  TVIRGNLERGLYFLDGSSVTGVAGVSSSDDLDSDTTKLWHMRLGHMSERGLSVLSKRGLL 943

Query: 789  EG 794
             G
Sbjct: 944  SG 945



 Score = 75.5 bits (184), Expect(3) = 9e-39
 Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 3/147 (2%)
 Frame = +1

Query: 4    ALVNFELRRKEESLNASN--GEAFVARDKGPEKQSPGNRNRSKSRDKTSGSRLSRDQCSL 177
            AL + ELR+K       N  GE  VAR +   K    +++  +S+ K       R QC  
Sbjct: 681  ALSSSELRKKITGKVVENNEGEGLVARGRSKAKGGSSSKSHPRSQSK------KRIQCYY 734

Query: 178  CKKQGHWRRECPEREKLKKESQPSQANLVRQDGNDSDFSLSVSSVAKDSDESG-WILDSG 354
            CKK GH + +CP+R++ K ESQ  Q +       DS     +     DS   G WILD+G
Sbjct: 735  CKKYGHMKVDCPKRKE-KSESQEQQNDRANVADADSSSDAEIVLAVSDSYAGGRWILDTG 793

Query: 355  ATCHICSTREYFTSFVEWHDEVFMENE 435
            AT HI ++++ F+++ +    V M N+
Sbjct: 794  ATFHISTSKDAFSTYEKHSGSVLMGND 820



 Score = 41.2 bits (95), Expect(3) = 9e-39
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +2

Query: 812  CVNIVHG--TREKFGTFIHQPVGLLDVVHMHIQGPSKVTSVEGNNYFVSFVDE 964
            C + V G  TR KF T IH+  G +D  H  + GPS   S  G  Y ++F+D+
Sbjct: 954  CEHCVFGKQTRVKFSTGIHKTKGTVDYFHSDLWGPSPTISKGGYRYLLTFIDD 1006


>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
          Length = 1841

 Score = 94.0 bits (232), Expect(3) = 9e-39
 Identities = 51/122 (41%), Positives = 74/122 (60%), Gaps = 4/122 (3%)
 Frame = +3

Query: 441  KVQETSTVHIRMHDGMVRKLLDVRYIPGFRTNIISIGALTSGGLKVTIEKDSLRVTKGSM 620
            +V    TV I+M DG+VR L DVR+IP  + N+IS+  L   G + + E   L+V  G++
Sbjct: 845  QVMGIGTVRIKMFDGIVRTLTDVRHIPEMKKNLISLSTLDKKGFRYSAEGGVLKVFSGAL 904

Query: 621  IVMRGVKVRNLYYLEGSAVTQARELSVED----DHTRLWHWRLGHATKESLLGLSRQ*LI 788
             V+RG   R LY+L+GS+VT    +S  D    D T+LWH RLGH ++  L  LS++ L+
Sbjct: 905  TVIRGNLERGLYFLDGSSVTGVAGVSSSDDLDSDTTKLWHMRLGHMSERGLSVLSKRGLL 964

Query: 789  EG 794
             G
Sbjct: 965  SG 966



 Score = 75.5 bits (184), Expect(3) = 9e-39
 Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 3/147 (2%)
 Frame = +1

Query: 4    ALVNFELRRKEESLNASN--GEAFVARDKGPEKQSPGNRNRSKSRDKTSGSRLSRDQCSL 177
            AL + ELR+K       N  GE  VAR +   K    +++  +S+ K       R QC  
Sbjct: 702  ALSSSELRKKITGKVVENNEGEGLVARGRSKAKGGSSSKSHPRSQSK------KRIQCYY 755

Query: 178  CKKQGHWRRECPEREKLKKESQPSQANLVRQDGNDSDFSLSVSSVAKDSDESG-WILDSG 354
            CKK GH + +CP+R++ K ESQ  Q +       DS     +     DS   G WILD+G
Sbjct: 756  CKKYGHMKVDCPKRKE-KSESQEQQNDRANVADADSSSDAEIVLAVSDSYAGGRWILDTG 814

Query: 355  ATCHICSTREYFTSFVEWHDEVFMENE 435
            AT HI ++++ F+++ +    V M N+
Sbjct: 815  ATFHISTSKDAFSTYEKHSGSVLMGND 841



 Score = 41.2 bits (95), Expect(3) = 9e-39
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +2

Query: 812  CVNIVHG--TREKFGTFIHQPVGLLDVVHMHIQGPSKVTSVEGNNYFVSFVDE 964
            C + V G  TR KF T IH+  G +D  H  + GPS   S  G  Y ++F+D+
Sbjct: 975  CEHCVFGKQTRVKFSTGIHKTKGTVDYFHSDLWGPSPTISKGGYRYLLTFIDD 1027


>gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 593

 Score =  107 bits (266), Expect(3) = 1e-38
 Identities = 52/124 (41%), Positives = 77/124 (62%), Gaps = 4/124 (3%)
 Frame = +3

Query: 441 KVQETSTVHIRMHDGMVRKLLDVRYIPGFRTNIISIGALTSGGLKVTIEKDSLRVTKGSM 620
           K     T+ I+MHDG++R L +VR++P  + N+IS+G L + G K  +E   + + KGS 
Sbjct: 303 KTISIGTIQIKMHDGVIRTLTEVRHVPDLKKNLISVGVLDTKGFKCNVEGGVMEINKGST 362

Query: 621 IVMRGVKVRNLYYLEGSAVTQARELSVEDDH----TRLWHWRLGHATKESLLGLSRQ*LI 788
           IV+RG+K  NLY L+GS    +  +SV D H    TRLWH RLGH ++  ++ LS+Q L+
Sbjct: 363 IVIRGIKKGNLYMLQGSTNLISESISVADKHTLDLTRLWHMRLGHMSERGMMVLSKQKLL 422

Query: 789 EGTT 800
              T
Sbjct: 423 RDHT 426



 Score = 64.7 bits (156), Expect(3) = 1e-38
 Identities = 41/144 (28%), Positives = 74/144 (51%), Gaps = 2/144 (1%)
 Frame = +1

Query: 10  VNFELRRKEESLNASNGEAFVARDKGPEKQSPGNRNRSKSRDKTSGSRLSRDQCSLCKKQ 189
           + F+     E +N +   AF +   G +K+  G     K + K +     RD C+ CK+ 
Sbjct: 171 LRFKASANSEGVNGAGLLAFNSTTNGKKKKEQG-----KKKTKVN----PRDICNYCKEP 221

Query: 190 GHWRRECPEREKLKKESQPSQANLVRQDGN-DSDFSLSVSSVAKDSDESGWILDSGATCH 366
           GHW+++CP     KK +Q S     ++D + +++  LS+    +   E  W+LDSG + H
Sbjct: 222 GHWKKDCP-----KKRNQKSVVVAAQEDSSFENELVLSIVDNHQHFVEQ-WVLDSGCSYH 275

Query: 367 ICSTREYFTSF-VEWHDEVFMENE 435
           +C  R +F ++  ++  +VFM N+
Sbjct: 276 MCPNRSWFLTYEKKFGGDVFMGND 299



 Score = 38.9 bits (89), Expect(3) = 1e-38
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +2

Query: 836 REKFGTFIHQPVGLLDVVHMHIQGPSKVTSVEGNNYFVSFVDE 964
           R KF    H     LD VH +  GPS+V S+ G  YF+S +D+
Sbjct: 443 RSKFPKAQHTTKSTLDYVHSNCWGPSRVPSLGGGRYFLSIIDD 485


>gb|KZV56298.1| hypothetical protein F511_00295 [Dorcoceras hygrometricum]
          Length = 1309

 Score =  100 bits (250), Expect(3) = 5e-38
 Identities = 53/117 (45%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
 Frame = +3

Query: 441 KVQETSTVHIRMHDGMVRKLLDVRYIPGFRTNIISIGALTSGGLKVTIEKDSLRVTKGSM 620
           KV    +V ++MHDG VR + +VRY+P  R N++SIG L S G  V IE  +++V KGS+
Sbjct: 320 KVMGIGSVLLKMHDGCVRTITEVRYVPDLRRNLLSIGMLDSKGFNVKIEGGTMKVIKGSL 379

Query: 621 IVMRGVKVRNLYYLEGSAVTQARELSVED-DHTRLWHWRLGHATKESLLGLSRQ*LI 788
            VMRG +   LY LE S VT +   +V   +  RLWH RLGH +++ L+ LS+Q L+
Sbjct: 380 TVMRGSQDNGLYILEASTVTGSSNAAVGGANKARLWHLRLGHVSEKGLVELSKQNLL 436



 Score = 69.3 bits (168), Expect(3) = 5e-38
 Identities = 41/140 (29%), Positives = 75/140 (53%), Gaps = 5/140 (3%)
 Frame = +1

Query: 1   AALVNFELRRKEESLNASNGEAFVARDKGPEKQS---PGNRNRSKSRDKTSGSRLSRDQC 171
           +AL + EL +K E+   S GE    R +  +++S    G ++RS+SR +       + +C
Sbjct: 176 SALNSKELHKKNETKMESTGEGLNVRGRTYKRESRNEKGGKHRSQSRTR------GKLKC 229

Query: 172 SLCKKQGHWRRECPEREKLKKE--SQPSQANLVRQDGNDSDFSLSVSSVAKDSDESGWIL 345
            +C K+GH++++CP+R     E    P  A +V    +D   S  V  V++ + +  W++
Sbjct: 230 FVCHKEGHFKKDCPDRRARNPERRKDPGDAAVV----SDGYESAEVLVVSRTNKQDCWVM 285

Query: 346 DSGATCHICSTREYFTSFVE 405
           DSG + H+C  + +F + VE
Sbjct: 286 DSGCSFHMCPIKSWFQNLVE 305



 Score = 38.1 bits (87), Expect(3) = 5e-38
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +2

Query: 785 DRRHNLQFGCVNIVHG--TREKFGTFIHQPVGLLDVVHMHIQGPSKVTSVEGNNYFVSFV 958
           D+  +L F C   V G  +R +F     Q  G+LD VH  + GPS+V S  G  Y++S +
Sbjct: 439 DKVDDLSF-CDECVLGKCSRVRFKRSSTQSKGILDYVHSDLWGPSRVASRGGARYYISVI 497

Query: 959 DE 964
           D+
Sbjct: 498 DD 499


>gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 609

 Score =  101 bits (251), Expect(3) = 3e-37
 Identities = 47/114 (41%), Positives = 74/114 (64%), Gaps = 4/114 (3%)
 Frame = +3

Query: 459 TVHIRMHDGMVRKLLDVRYIPGFRTNIISIGALTSGGLKVTIEKDSLRVTKGSMIVMRGV 638
           T+ I+MHDG++R L +VR++P  + N+IS+G L + G K  +E   + ++KGS +V+RG+
Sbjct: 257 TIQIKMHDGVIRTLTEVRHVPDLKKNLISVGVLHTKGFKCNVEGGVMEISKGSTVVIRGI 316

Query: 639 KVRNLYYLEGSAVTQARELSVEDDH----TRLWHWRLGHATKESLLGLSRQ*LI 788
           K  NLY L+GS    +  +SV D H    T LWH RLGH ++  ++ L +Q L+
Sbjct: 317 KKGNLYMLQGSTNLISESVSVADKHTPDLTHLWHMRLGHMSERGMMVLRKQKLL 370



 Score = 67.4 bits (163), Expect(3) = 3e-37
 Identities = 43/142 (30%), Positives = 74/142 (52%), Gaps = 2/142 (1%)
 Frame = +1

Query: 16  FELRRKEESLNASNGEAFVARDKGPEKQSPGNRNRSKSRDKTSGSRLSRDQCSLCKKQGH 195
           F+     E +N +   AF +   G +K+  G     K + K +     RD C+ CK+ GH
Sbjct: 121 FKASANSEGVNGAGLLAFNSTKNGKKKKEQG-----KKKTKVN----PRDICNYCKEPGH 171

Query: 196 WRRECPEREKLKKESQPSQANLVRQDGN-DSDFSLSVSSVAKDSDESGWILDSGATCHIC 372
           W+++CP     KK +Q S A   ++D + +++  LS+    + S E  W+LDSG + H+C
Sbjct: 172 WKKDCP-----KKRNQKSVAVAAQEDSSFENELVLSIVDNHQHSAEQ-WVLDSGCSYHMC 225

Query: 373 STREYFTSFVEWH-DEVFMENE 435
             R +F ++ +    +VFM N+
Sbjct: 226 PNRSWFLTYEKKSGGDVFMGND 247



 Score = 37.0 bits (84), Expect(3) = 3e-37
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +2

Query: 836 REKFGTFIHQPVGLLDVVHMHIQGPSKVTSVEGNNYFVSFVDE 964
           R KF    H     LD VH    GPS+V S+ G  YF+S +D+
Sbjct: 391 RIKFPKAQHTTKSTLDYVHSDCWGPSRVPSLGGGRYFLSIIDD 433


>gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 448

 Score =  100 bits (250), Expect(3) = 3e-35
 Identities = 49/118 (41%), Positives = 75/118 (63%), Gaps = 4/118 (3%)
 Frame = +3

Query: 459 TVHIRMHDGMVRKLLDVRYIPGFRTNIISIGALTSGGLKVTIEKDSLRVTKGSMIVMRGV 638
           T+ +RMHDG++R L +VR++P  + N+IS+G L S G K  ++   + + +GS +VMRG 
Sbjct: 96  TIQLRMHDGVIRTLTEVRHVPDLKKNLISVGVLDSKGFKCNVKNGVMEIKRGSTVVMRGF 155

Query: 639 KVRNLYYLEGSAVTQARELSVED----DHTRLWHWRLGHATKESLLGLSRQ*LIEGTT 800
           K  NLY L+GS  + +  +SV +    D T LWH RLGH ++  ++ LSRQ L+   T
Sbjct: 156 KKGNLYMLQGSTSSISESVSVAEKNIPDLTYLWHMRLGHMSERGMMILSRQQLLGNHT 213



 Score = 60.8 bits (146), Expect(3) = 3e-35
 Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
 Frame = +1

Query: 169 CSLCKKQGHWRRECPEREKLKKESQPSQANLVRQDGNDSDFSLSVSSVAKDSDESG-WIL 345
           C+ CK+ GHW+ +CP     KK++Q   A  V++  + SD  L +S V      +  W+L
Sbjct: 1   CNYCKEPGHWKNDCP-----KKKNQKPTAVTVQESTSSSDNELVLSIVDNHQQSADQWVL 55

Query: 346 DSGATCHICSTREYFTSFVE-WHDEVFMENE 435
           DSG + H+C  R +F ++ E     VFM N+
Sbjct: 56  DSGCSYHMCPNRSWFLTYEERLGGRVFMGND 86



 Score = 37.4 bits (85), Expect(3) = 3e-35
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 812 CVNIVHGT--REKFGTFIHQPVGLLDVVHMHIQGPSKVTSVEGNNYFVSFVDE 964
           C + V G   R KF    H     LD +H    GPS+V S+ G  YF+S +D+
Sbjct: 220 CEHCVFGKQHRIKFPKAQHSTKSTLDYIHSDCWGPSQVPSLGGGRYFLSIIDD 272


>gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]
          Length = 876

 Score = 82.8 bits (203), Expect(3) = 2e-34
 Identities = 47/128 (36%), Positives = 76/128 (59%), Gaps = 5/128 (3%)
 Frame = +3

Query: 462 VHIRMHDGMVRKLLDVRYIPGFRTNIISIGALTSGGLKVTIEKDS--LRVTKGSMIVMRG 635
           + I M DG VR L +VRYIP  R N+IS+G L   G     ++D   L+V+KG++ VMR 
Sbjct: 253 IKIAMDDGGVRTLTNVRYIPELRKNLISLGTLQENGYSYRSDRDRDILKVSKGALTVMRV 312

Query: 636 VKVR-NLYYLEGSAVT-QARELSVEDDHTRLWHWRLGHATKESLLGLSRQ*LIEGT-TCN 806
            +   N+Y L G+ V      +  ++D T+LWH RLGH ++  ++ L ++ L++G  +C 
Sbjct: 313 KRTAGNIYKLLGNTVVGDVASVESDNDATKLWHLRLGHLSERGMMELHKRSLLKGVCSCK 372

Query: 807 LDV*TLCM 830
           +D+   C+
Sbjct: 373 MDLCKYCV 380



 Score = 72.4 bits (176), Expect(3) = 2e-34
 Identities = 40/125 (32%), Positives = 64/125 (51%)
 Frame = +1

Query: 25  RRKEESLNASNGEAFVARDKGPEKQSPGNRNRSKSRDKTSGSRLSRDQCSLCKKQGHWRR 204
           +R++ +   S GE    +      ++ G     K R K+   + S  +C  CK+ GHW+R
Sbjct: 113 QRRQNAEGGSQGEGLYVQGCSDRGRNKGKAGSGKKRSKSKNRKTS--ECYSCKQIGHWKR 170

Query: 205 ECPEREKLKKESQPSQANLVRQDGNDSDFSLSVSSVAKDSDESGWILDSGATCHICSTRE 384
           +CP      K+   + ANLV  D + S+  +   S +K +D   WILDSG + H+   RE
Sbjct: 171 DCPNI----KQGSSTSANLVHTDDSCSEGDILCVSSSKCTD--AWILDSGCSYHMTPNRE 224

Query: 385 YFTSF 399
           +FT+F
Sbjct: 225 WFTTF 229



 Score = 41.2 bits (95), Expect(3) = 2e-34
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = +2

Query: 836 REKFGTFIHQPVGLLDVVHMHIQGPSKVTSVEGNNYFVSFVDE 964
           R +F    H+  G+LD VH  + GP++  S+ G+ YFV+F D+
Sbjct: 386 RVRFKPMKHKTEGILDYVHSDVWGPTREASMGGSRYFVTFTDD 428


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
 gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score = 82.4 bits (202), Expect(3) = 2e-34
 Identities = 46/124 (37%), Positives = 72/124 (58%), Gaps = 4/124 (3%)
 Frame = +3

Query: 435 IYKVQETSTVHIRMHDGMVRKLLDVRYIPGFRTNIISIGALTSGGLKVTIEKDSLRVTKG 614
           + KV  T ++ IR HDG    L +VR++P    N+IS+  L S G   + +   LRV KG
Sbjct: 314 VCKVVGTGSIKIRTHDGSFCTLNEVRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKG 373

Query: 615 SMIVMRGVKVRNLYYLEGSAVTQARELSVEDDH----TRLWHWRLGHATKESLLGLSRQ* 782
           S ++++GV    LY+L+GS VT +  ++  + H    T+LWH RLGH  +  +  LS++ 
Sbjct: 374 SNLILKGVMRGTLYFLQGSTVTGSAHVASSEFHQKDMTKLWHIRLGHMGERGMQILSKED 433

Query: 783 LIEG 794
           L+ G
Sbjct: 434 LLAG 437



 Score = 72.4 bits (176), Expect(3) = 2e-34
 Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
 Frame = +1

Query: 1   AALVNFELRRKEESLNASNGEAFVARDKGPEKQS-PGNRNRSKSRDKTSGSRLSRDQCSL 177
           +AL + ELR K      +NG +   +  G    S  G +N  K     S      D C+ 
Sbjct: 174 SALHSRELRHK------ANGTSTDIQPSGLFTSSRKGRKNGGKKNKPMSKGAKPDDVCNY 227

Query: 178 CKKQGHWRRECPEREKLKKESQPSQANLVRQDGNDSDFSLSVSSVAKDSDESGWILDSGA 357
           CK++GHW+ +CP+++K  ++   S A       ++ D +L        SD   W+LDSGA
Sbjct: 228 CKEKGHWKFDCPKKKKQSEKQSVSAAVAEEDTNSEEDIALVADEHTHHSDV--WVLDSGA 285

Query: 358 TCHICSTREYFTSF 399
           + HIC  RE+FT++
Sbjct: 286 SYHICPRREWFTTY 299



 Score = 41.2 bits (95), Expect(3) = 2e-34
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +2

Query: 797 NLQFGCVNIVHGT--REKFGTFIHQPVGLLDVVHMHIQGPSKVTSVEGNNYFVSFVDE 964
           +L+F C + V G   R KF   IH+  G LD +H    GP +V S+ G  +FVS +D+
Sbjct: 442 SLEF-CEHCVFGKLHRNKFPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDD 498


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score = 86.7 bits (213), Expect(3) = 2e-33
 Identities = 48/117 (41%), Positives = 73/117 (62%)
 Frame = +3

Query: 444  VQETSTVHIRMHDGMVRKLLDVRYIPGFRTNIISIGALTSGGLKVTIEKDSLRVTKGSMI 623
            V+ + +V I+M+DG+VR L +  Y+PG R N+IS+G L   G   +     LRV+KG+++
Sbjct: 657  VKGSGSVQIKMYDGLVRTL-NAWYVPGLRKNLISVGTLDKNGYTFSGSGGVLRVSKGALV 715

Query: 624  VMRGVKVRNLYYLEGSAVTQARELSVEDDHTRLWHWRLGHATKESLLGLSRQ*LIEG 794
            VM+G     +Y L GS+V     +  ED+ T LWH RLGH +++ L  LS+Q L+ G
Sbjct: 716  VMKGRLQHGIYTLMGSSVLGTAAVE-EDNCTELWHRRLGHMSEKGLSILSKQGLLSG 771



 Score = 68.2 bits (165), Expect(3) = 2e-33
 Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 12/144 (8%)
 Frame = +1

Query: 25  RRKEESLNASNGEA----FVARDKGPEKQSPGNRNRSKSRDKTSGSRLSRDQCSLCKKQG 192
           +R+  +L  S G       V+R +  E+   G   RSKSR K+        +C  CK++G
Sbjct: 511 KRRLHTLKMSEGSVETGLTVSRGRSMERNGGG---RSKSRPKSKAEM----RCFHCKEKG 563

Query: 193 HWRRECPEREK--------LKKESQPSQANLVRQDGNDSDFSLSVSSVAKDSDESGWILD 348
           H+R+ CP+R+K           +   +Q    + D +D      V +V+  S    WILD
Sbjct: 564 HFRKNCPQRQKGIGSGVGMEIAQVVVAQKYXEKXDSSDEGEGGDVLTVSTSSSAESWILD 623

Query: 349 SGATCHICSTREYFTSFVEWHDEV 420
           +GA+ H+  +R+ FT+F EW+  V
Sbjct: 624 TGASYHMAYSRDLFTTFKEWNGSV 647



 Score = 38.1 bits (87), Expect(3) = 2e-33
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 836 REKFGTFIHQPVGLLDVVHMHIQGPSKVTSVEGNNYFVSFVDE 964
           R KF    H   G+L+ +H  + GPS V S  G  Y+V+F+D+
Sbjct: 790 RVKFSMGSHTTNGVLEYIHSDLWGPSPVESHSGCRYYVTFIDD 832


>gb|OMO83367.1| Integrase, catalytic core [Corchorus capsularis]
          Length = 785

 Score = 78.2 bits (191), Expect(3) = 2e-33
 Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 10/156 (6%)
 Frame = +1

Query: 4   ALVNFELRRKEESLNASNGEAFVARDKGPEKQSPGNRNRSKSRDKTSGSRLSRDQCSLCK 183
           AL++ EL+ K  +         V R +  EK S   R RS+S+     SR+SR +C  C 
Sbjct: 154 ALLSKELQNKVSADVDGEAGLIVTRGRNKEKSSGTTRFRSRSK-----SRVSRLRCFYCN 208

Query: 184 KQGHWRRECPEREK----LKKESQPSQANLVRQDGN------DSDFSLSVSSVAKDSDES 333
           ++GH R++CP+R+K     K ES       + Q+G+      D +    V +V+     +
Sbjct: 209 EKGHLRKDCPDRKKGNSSEKMESNVKAMVAIVQEGSSLVETSDDEVGTDVLTVSTTGSAN 268

Query: 334 GWILDSGATCHICSTREYFTSFVEWHDEVFMENEST 441
            W+LD+ A+ H+  +R  FT+F EW+  V + +++T
Sbjct: 269 TWVLDTSASYHMTFSRNLFTTFKEWNGSVMLGDKTT 304



 Score = 77.8 bits (190), Expect(3) = 2e-33
 Identities = 43/124 (34%), Positives = 72/124 (58%), Gaps = 4/124 (3%)
 Frame = +3

Query: 444 VQETSTVHIRMHDGMVRKLLDVRYIPGFRTNIISIGALTSGGLKVTIEKDSLRVTKGSMI 623
           V+ + +V I+ HDG +R   D   +P  R N+IS+G L   G K + E   ++V+KG+M 
Sbjct: 307 VKGSGSVQIKTHDGTIRTF-DAWLVPELR-NLISLGTLDKQGYKYSGENGQIKVSKGAMT 364

Query: 624 VMRGVKVRNLYYLEGSAV----TQARELSVEDDHTRLWHWRLGHATKESLLGLSRQ*LIE 791
           +++G     +Y L G++V      +  L   +D T LWH RLGH +++ L  LS++ L++
Sbjct: 365 ILKGKLQHGIYTLIGNSVIGEVAVSESLGDSNDRTELWHLRLGHMSEQGLSILSKRGLLD 424

Query: 792 GTTC 803
           G+ C
Sbjct: 425 GSEC 428



 Score = 37.0 bits (84), Expect(3) = 2e-33
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +2

Query: 842 KFGTFIHQPVGLLDVVHMHIQGPSKVTSVEGNNYFVSFVDE 964
           KF +  H   G+LD VH  + GP+ V S     YFV+F+D+
Sbjct: 446 KFSSGKHTSKGILDYVHSDLWGPAPVESHSRCRYFVTFIDD 486


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score = 76.6 bits (187), Expect(3) = 3e-33
 Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
 Frame = +3

Query: 486 MVRKLLDVRYIPGFRTNIISIGALTSGGLKVTIEKDSLRVTKGSMIVMRGVKVRNLYYLE 665
           ++R L +VR+ P  + N+IS+G L S G         L V KG+ IVM+GV    LY L+
Sbjct: 345 LLRSLHEVRHAPRLKRNLISLGMLDSLGYFFKSRIGGLEVRKGTEIVMKGVNENGLYVLQ 404

Query: 666 GSAVTQARELSV--EDDHTRLWHWRLGHATKESLLGLSRQ*LIEG 794
           GS+V     +S   E+D T+LWH RLGH + + L  LS+Q L+ G
Sbjct: 405 GSSVPVQEGVSAVSEEDRTKLWHLRLGHMSIKGLQELSKQGLLGG 449



 Score = 73.6 bits (179), Expect(3) = 3e-33
 Identities = 38/136 (27%), Positives = 74/136 (54%), Gaps = 3/136 (2%)
 Frame = +1

Query: 1   AALVNFELRRKEESLNASNGEAFVARDKGPEKQSPGNRNRSKSRDK---TSGSRLSRDQC 171
           A+L + E+++  E L  SNGE  +AR +  +K+   N+N+ K   K   T+  +  + +C
Sbjct: 180 ASLSSKEIQKNCE-LETSNGEGLMARTE--KKKDQKNKNQGKGHGKNQETADKKKKKRKC 236

Query: 172 SLCKKQGHWRRECPEREKLKKESQPSQANLVRQDGNDSDFSLSVSSVAKDSDESGWILDS 351
             C+K+GH+ R+C E++K + + +   A +   DG+D   S  +   +  + +  W++DS
Sbjct: 237 FYCRKEGHYIRDCFEKKKKESQEKSGDAAVASDDGSDGYQSADLLVASNSNTKGQWVIDS 296

Query: 352 GATCHICSTREYFTSF 399
           G + H+C  +  F  +
Sbjct: 297 GCSFHLCPEKTLFYKY 312



 Score = 42.0 bits (97), Expect(3) = 3e-33
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +2

Query: 785 DRRHNLQFGCVNIVHGT--REKFGTFIHQPVGLLDVVHMHIQGPSKVTSVEGNNYFVSFV 958
           DR   L+F C N + G   R KF    H    +LD  H+   GP++V S+ G  YF+S +
Sbjct: 450 DRIQQLEF-CENCIFGKSHRSKFNKGEHMSKQVLDYAHIDHWGPAQVPSLSGGRYFMSLI 508

Query: 959 DE 964
           D+
Sbjct: 509 DD 510


>gb|KYP64673.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 780

 Score = 80.9 bits (198), Expect(3) = 3e-33
 Identities = 44/121 (36%), Positives = 69/121 (57%), Gaps = 3/121 (2%)
 Frame = +3

Query: 441 KVQETSTVHIRMHDGMVRKLLDVRYIPGFRTNIISIGALTSGGLKVTIEKDSLRVTKGSM 620
           +VQ   TV ++M D     L DVRY+P  + N+ISI    S G     +   L++  GS+
Sbjct: 323 QVQGIGTVRLKMFDNREYILKDVRYVPDLKRNLISISMFDSLGYATKTQHGVLKILNGSL 382

Query: 621 IVMRGVKVRN--LYYLEGSAVTQARELSVED-DHTRLWHWRLGHATKESLLGLSRQ*LIE 791
           ++ +G K +N  L+ L+GS V     ++  D D T+LWH RLGH ++  L+ L +Q L++
Sbjct: 383 VIAKGNKDKNNGLFVLDGSTVMAHASIARNDIDKTKLWHLRLGHVSERGLIELEKQNLLK 442

Query: 792 G 794
           G
Sbjct: 443 G 443



 Score = 70.1 bits (170), Expect(3) = 3e-33
 Identities = 38/124 (30%), Positives = 65/124 (52%)
 Frame = +1

Query: 19  ELRRKEESLNASNGEAFVARDKGPEKQSPGNRNRSKSRDKTSGSRLSRDQCSLCKKQGHW 198
           EL+R++++    NGE+        EK+    + + K+R K+     S+ +C  C K GH+
Sbjct: 184 ELQRQQDNKTDDNGESLNVSRGRSEKKGQSQKGK-KARSKSKIGDRSKFKCFYCHKVGHF 242

Query: 199 RRECPEREKLKKESQPSQANLVRQDGNDSDFSLSVSSVAKDSDESGWILDSGATCHICST 378
           ++ CPER + +K S  S       DG +S   L V++     D   W++DSG + H+C  
Sbjct: 243 KKNCPERNRDQKSSADSADIAAISDGYESADVLVVTTSQTQKD---WVMDSGCSYHMCPK 299

Query: 379 REYF 390
           ++YF
Sbjct: 300 KDYF 303



 Score = 41.2 bits (95), Expect(3) = 3e-33
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
 Frame = +2

Query: 785 DRRHNLQFGCVNIVHGT--REKFGTFIHQPVGLLDVVHMHIQGPSKVTSVEGNNYFVSFV 958
           D+   L+F C + V G   R KFGT IH      + VH  + GPS+V ++ G +YF++ +
Sbjct: 444 DKLDKLEF-CEHCVLGKSHRVKFGTGIHVSSRPFEYVHADLWGPSRVKTLGGGSYFLTII 502

Query: 959 DE 964
           D+
Sbjct: 503 DD 504


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
 gb|AAU89150.1| integrase core domain containing protein [Oryza sativa Japonica
           Group]
 gb|ABF98081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1322

 Score = 84.0 bits (206), Expect(3) = 2e-32
 Identities = 48/119 (40%), Positives = 69/119 (57%), Gaps = 5/119 (4%)
 Frame = +3

Query: 459 TVHIRMHDGMVRKLLDVRYIPGFRTNIISIGALTSGGLKVTIEKDSLRVTKGSMIVMRG- 635
           +V I+ HDGM R L DVR+IPG   N+IS+  L + G K +     ++V+KGS++ M G 
Sbjct: 336 SVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGD 395

Query: 636 VKVRNLYYLEGS----AVTQARELSVEDDHTRLWHWRLGHATKESLLGLSRQ*LIEGTT 800
           +   NLY L GS    +VT A     E   T LWH RLGH ++  +  L ++ L++G T
Sbjct: 396 MNSANLYVLRGSTLHGSVTAAAVTKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGCT 454



 Score = 61.6 bits (148), Expect(3) = 2e-32
 Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 2/135 (1%)
 Frame = +1

Query: 46  NASNGEAFVARDKGPEKQSPGNRNRSKSRDKTSGSRLSRDQCSLCKKQGHWRRECPEREK 225
           ++S GEA   R +  ++    + +  KS+ +       +  C  CKK+ H+  EC + + 
Sbjct: 195 SSSKGEALQVRGRSEQRTYNDSNDHDKSQSRGRSKSRGKKFCKYCKKKNHFIEECWKLQN 254

Query: 226 LKKESQPSQANLVRQDGNDSDFSLSVSSVAKDSDESGWILDSGATCHICSTREYFTSF-- 399
            +K     +A++V    N       V      +    WILD+  + HIC  R++F+S+  
Sbjct: 255 KEKRKSDGKASVVTSAENSDSGDCLVVFAGYVASHDEWILDTACSFHICINRDWFSSYKS 314

Query: 400 VEWHDEVFMENESTR 444
           V+  D V M +++ R
Sbjct: 315 VQNEDVVRMGDDNPR 329



 Score = 43.5 bits (101), Expect(3) = 2e-32
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
 Frame = +2

Query: 797 NLQFGCVNIVHGT--REKFGTFIHQPVGLLDVVHMHIQGPSKVTSVEGNNYFVSFVDE 964
           N++F C + V G   R KF T +H+  G+LD VH  + GPS+  S+ G  Y ++ +D+
Sbjct: 457 NMKF-CEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDD 513


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score = 76.3 bits (186), Expect(3) = 5e-32
 Identities = 43/115 (37%), Positives = 67/115 (58%), Gaps = 9/115 (7%)
 Frame = +3

Query: 444 VQETSTVHIRMHDGMVRKLLDVRYIPGFRTNIISIGALTSGGLKVTIEKDSLRVTKGSMI 623
           V+ + +V I+M+DG+VR L +  Y+PG R N+IS+G L   G   +     LRV+KG+++
Sbjct: 460 VKGSGSVQIKMYDGLVRTL-NAWYVPGLRKNLISVGTLDKNGYTFSGSGGVLRVSKGALV 518

Query: 624 VMRGVKVRNLYYLEGSAVTQARELS---------VEDDHTRLWHWRLGHATKESL 761
           VM+G     +Y L GS+V     +S          +D+ T LWH RLGH +++ L
Sbjct: 519 VMKGRLQHGIYTLMGSSVLGTAAVSSSMAIDSVEKKDNCTELWHRRLGHMSEKGL 573



 Score = 74.7 bits (182), Expect(3) = 5e-32
 Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 7/124 (5%)
 Frame = +1

Query: 70  VARDKGPEKQSPGNRNRSKSRDKTSGSRLSRDQCSLCKKQGHWRRECPEREKLKKESQPS 249
           V+R +  E+   G   RSKSR K+  +     +C  CK++GH+R+ CP+R+K   +    
Sbjct: 334 VSRGRSMERNGGG---RSKSRSKSKAAM----RCFHCKEKGHFRKNCPQRQKGIGQGSNG 386

Query: 250 QANLV-------RQDGNDSDFSLSVSSVAKDSDESGWILDSGATCHICSTREYFTSFVEW 408
            A +V       +QD +D      V +V+  S    WILD+GA+ H+  +R+ FT+F EW
Sbjct: 387 NAQVVVAQKDSEKQDSSDEGEGGDVLTVSTSSSAESWILDTGASYHMAYSRDLFTTFKEW 446

Query: 409 HDEV 420
           +  V
Sbjct: 447 NGSV 450



 Score = 37.0 bits (84), Expect(3) = 5e-32
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 842 KFGTFIHQPVGLLDVVHMHIQGPSKVTSVEGNNYFVSFVDE 964
           KF    H   G+L+ +H  + GPS V S  G  Y+V+F+D+
Sbjct: 579 KFSMGSHTTNGVLEYIHSDLWGPSPVESHSGCRYYVTFIDD 619


>gb|PKA49510.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 365

 Score = 92.4 bits (228), Expect(2) = 9e-32
 Identities = 50/139 (35%), Positives = 80/139 (57%), Gaps = 3/139 (2%)
 Frame = +3

Query: 459 TVHIRMHDGMVRKLLDVRYIPGFRTNIISIGALTSGGLKVTIEKDSLRVTKGSMIVMRGV 638
           T+ I+M DG++R L +VR++P  R  +IS+G L + G         ++V KG+ +VM+G 
Sbjct: 212 TIKIKMFDGVIRTLTEVRHVPDLRKGLISLGTLDASGCTFIGSDGIIKVKKGAPVVMKGE 271

Query: 639 KVRNLYYLEGSAVTQ--ARELSVEDDHTRLWHWRLGHATKESLLGLSRQ*LIEG-TTCNL 809
           K+ +LY L G  +T   A   S +DD T LWH RLGH ++  LL L  + L++G  +C +
Sbjct: 272 KIESLYRLIGKTITGDIAVTSSTDDDDTMLWHARLGHMSERGLLELHNRKLLKGIKSCKI 331

Query: 810 DV*TLCMEQERSLVPLFTN 866
           D    C+  ++  V   T+
Sbjct: 332 DFCEFCVLGKQCRVKFVTS 350



 Score = 74.3 bits (181), Expect(2) = 9e-32
 Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 6/152 (3%)
 Frame = +1

Query: 1   AALVNFELRRKEESLNASNGEAFVAR---DKGPEKQSPGNRNRSKSRDKTSGSRLSRDQC 171
           A L++ E+R K+     S GE+   +   D+G  K   GN+ R +S  K + +R     C
Sbjct: 66  ATLLSNEVRNKQ-----STGESLTVKTSQDRGRSKNKFGNQYRYRSISKENDNR-----C 115

Query: 172 SLCKKQGHWRRECPEREKLKKESQP-SQANLVRQDGNDSDFSLSVSSVAKDSDESGWILD 348
             CKK+GHW+R+CP++ K +++ +   +A++  +   DS+   + S +  DS +S WILD
Sbjct: 116 YYCKKEGHWKRDCPKKSKQQQQKKSGEEASVASRLEKDSETLCTFSCM--DSSDS-WILD 172

Query: 349 SGATCHICSTREYFTSFVEWHD--EVFMENES 438
           S  + H+C  R++F+++   HD   V M N S
Sbjct: 173 SDCSYHMCPFRDWFSTY-SIHDGGRVIMGNNS 203


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
 gb|ABF96427.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1326

 Score = 83.2 bits (204), Expect(3) = 2e-31
 Identities = 48/119 (40%), Positives = 69/119 (57%), Gaps = 5/119 (4%)
 Frame = +3

Query: 459 TVHIRMHDGMVRKLLDVRYIPGFRTNIISIGALTSGGLKVTIEKDSLRVTKGSMIVMRG- 635
           +V I+ HDGM R L DVR+IPG   N+IS+  L + G K +     ++V+KGS++ M G 
Sbjct: 336 SVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYMIGD 395

Query: 636 VKVRNLYYLEGS----AVTQARELSVEDDHTRLWHWRLGHATKESLLGLSRQ*LIEGTT 800
           +   NLY L GS    +VT A     E   T LWH RLGH ++  +  L ++ L++G T
Sbjct: 396 MNSANLYVLRGSTLHGSVTAAAVSKDEPIKTNLWHMRLGHMSELGMAELMKRNLLDGCT 454



 Score = 62.4 bits (150), Expect(3) = 2e-31
 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 2/139 (1%)
 Frame = +1

Query: 34  EESLNASNGEAFVARDKGPEKQSPGNRNRSKSRDKTSGSRLSRDQCSLCKKQGHWRRECP 213
           +   ++S GEA   R +  ++    + +R KS+ +       +  C  CKK+ H+  EC 
Sbjct: 191 QSDASSSKGEALQVRGRSEQRTYNDSSDRDKSQSRGRSKSRGKKFCKYCKKKNHFIEECW 250

Query: 214 EREKLKKESQPSQANLVRQDGNDSDFSLSVSSVAKDSDESGWILDSGATCHICSTREYFT 393
           + +  +K     +A++V    N       V      +    WILD+  + HIC  R++F+
Sbjct: 251 KLQNKEKRKSDGKASVVTSAENSDSGDCLVVFAGCVASHDEWILDTACSFHICINRDWFS 310

Query: 394 SF--VEWHDEVFMENESTR 444
           S+  V+  D V M +++ R
Sbjct: 311 SYKSVQNGDVVRMGDDNPR 329



 Score = 40.4 bits (93), Expect(3) = 2e-31
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +2

Query: 812 CVNIVHGT--REKFGTFIHQPVGLLDVVHMHIQGPSKVTSVEGNNYFVSFVDE 964
           C + V G   R KF T +H+  G+LD VH  + GPS+   + G  Y ++ +D+
Sbjct: 461 CEHCVFGKHKRVKFNTSVHRTKGILDYVHTDLWGPSRKAYLGGARYMLTIIDD 513