BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon23_contig00014655
         (2406 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020262150.1| DNA-directed RNA polymerase IV subunit 1 [As...  1064   0.0  
gb|ONK73338.1| uncharacterized protein A4U43_C04F29910 [Asparagu...  1052   0.0  
ref|XP_017700627.1| PREDICTED: DNA-directed RNA polymerase IV su...   889   0.0  
ref|XP_017700629.1| PREDICTED: DNA-directed RNA polymerase IV su...   882   0.0  
ref|XP_019705595.1| PREDICTED: DNA-directed RNA polymerase IV su...   880   0.0  
ref|XP_009411452.1| PREDICTED: DNA-directed RNA polymerase IV su...   790   0.0  
ref|XP_009411449.1| PREDICTED: DNA-directed RNA polymerase IV su...   790   0.0  
ref|XP_020084502.1| DNA-directed RNA polymerase IV subunit 1 iso...   771   0.0  
ref|XP_020084500.1| DNA-directed RNA polymerase IV subunit 1 iso...   771   0.0  
gb|OAY84267.1| DNA-directed RNA polymerase IV subunit 1 [Ananas ...   761   0.0  
gb|ONM02907.1| DNA-directed RNA polymerase IV subunit 1 [Zea mays]    709   0.0  
gb|ONM02908.1| DNA-directed RNA polymerase IV subunit 1 [Zea mays]    709   0.0  
gb|ONM02906.1| DNA-directed RNA polymerase IV subunit 1, partial...   709   0.0  
ref|XP_020394617.1| DNA dependent RNA polymerase D largest subun...   709   0.0  
ref|XP_004970758.1| DNA-directed RNA polymerase IV subunit 1 iso...   704   0.0  
gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest sub...   709   0.0  
ref|NP_001182824.1| DNA dependent RNA polymerase D largest subun...   709   0.0  
ref|XP_021318621.1| DNA-directed RNA polymerase IV subunit 1 iso...   699   0.0  
ref|XP_010278508.1| PREDICTED: DNA-directed RNA polymerase IV su...   705   0.0  
ref|XP_019055894.1| PREDICTED: DNA-directed RNA polymerase IV su...   705   0.0  

>ref|XP_020262150.1| DNA-directed RNA polymerase IV subunit 1 [Asparagus officinalis]
          Length = 1529

 Score = 1064 bits (2752), Expect = 0.0
 Identities = 544/777 (70%), Positives = 633/777 (81%), Gaps = 4/777 (0%)
 Frame = -3

Query: 2404 DCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIGDPKI 2225
            DCLN+SKLH+N  S  + + Y S +ND+PS TGLKW+KEVVLSKRSDNTFR+IMIGDPK+
Sbjct: 355  DCLNISKLHNNSTSAEEQAAY-SVKNDKPSCTGLKWVKEVVLSKRSDNTFRVIMIGDPKM 413

Query: 2224 QLGEIGLPQDVSRTLYISEHVNAHNVEKLKSSCLLHLISKPELKARRKGKLIFIHSSDQL 2045
            + GEIGLP+D+   LYI+EHVN HNV+KLK  C LH+ SK EL ARRK KLI IH+S QL
Sbjct: 414  KTGEIGLPRDICENLYIAEHVNNHNVKKLKEVCELHVRSKRELHARRKDKLILIHNSKQL 473

Query: 2044 QVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGD 1865
            QVGDT N+ LEDGDIIMVNRNPSVHPHSLLALSVKILPV+  VSINPLCCAPLLGDFDGD
Sbjct: 474  QVGDTFNKPLEDGDIIMVNRNPSVHPHSLLALSVKILPVKDVVSINPLCCAPLLGDFDGD 533

Query: 1864 CLHGFVPQSVRARVXXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFE 1685
            CLHGFVPQS+ ARV           LFN Q G+SLLSLTHDSLTAAHLLME E+F +K E
Sbjct: 534  CLHGFVPQSIGARVELKELLSLDSQLFNYQGGQSLLSLTHDSLTAAHLLMEDEIFLNKRE 593

Query: 1684 MQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVP 1505
            MQQL ML P   +FP +IKAP ++MP+WTG QLFSM+LP++M+F+  SS  E+  GDLVP
Sbjct: 594  MQQLNMLCPWNLEFPTVIKAPTIEMPQWTGWQLFSMLLPIDMDFAPASSSFEIRKGDLVP 653

Query: 1504 SPGV----SFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYL 1337
              GV    S SS+  IS +FSRMFECYG KA+ YLF FQE+LCEYLTMRGLSVSLHD+YL
Sbjct: 654  PSGVSSSSSSSSQKIISEIFSRMFECYGGKAHEYLFHFQEILCEYLTMRGLSVSLHDIYL 713

Query: 1336 TSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETDDLSHTLNISNFAR 1157
             S+ YTR KLI+EVS ALEEAK S  F+ELMLEP +G ++K HDE+DDLSHT+++SN  R
Sbjct: 714  ASNAYTRTKLINEVSCALEEAKGSFRFSELMLEPMVGFLLKEHDESDDLSHTIDVSNITR 773

Query: 1156 ERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXL 977
              RP+S+ASIAKFKD+FRDLQ+VV +Y+S++NSLFTMM AGSKGSL K           L
Sbjct: 774  -TRPMSEASIAKFKDIFRDLQNVVHHYVSADNSLFTMMRAGSKGSLLKLVQQGLCLGLQL 832

Query: 976  SAKPLPFNIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECF 797
            S K LPF IPL+LSC  WN+HKAF+RS+  +D S+ S GENSYAVIEASFLDGL+PLECF
Sbjct: 833  STKTLPFTIPLELSCFAWNEHKAFNRSVSEKDESDFSRGENSYAVIEASFLDGLNPLECF 892

Query: 796  VHALSCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKS 617
             HAL+CR+NMFSENA++PGTLTRKIMF+MRDI VAYDGTVRN+YGQQ+VQFS+ SP +KS
Sbjct: 893  FHALACRANMFSENAQVPGTLTRKIMFHMRDIYVAYDGTVRNSYGQQVVQFSHQSPYEKS 952

Query: 616  CEDCDHSHFSIGEDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVL 437
                 +S FSI EDS   +L G PVGSLAACSISEAAYGALD PVNSLESSPLLNLKKVL
Sbjct: 953  ----RNSQFSI-EDS---QLSGQPVGSLAACSISEAAYGALDTPVNSLESSPLLNLKKVL 1004

Query: 436  ECAPTRTSVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDA 257
            EC P +TS  RTASL LSNKL++LNYGFEYGALAV++HLD+VFFSD+VTSVMIFY+A D 
Sbjct: 1005 ECVPGKTSTERTASLVLSNKLRKLNYGFEYGALAVRDHLDKVFFSDVVTSVMIFYAARDI 1064

Query: 256  KGTKGMRLSPWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFREGKKFPRLFMTSQ 86
            K TKG +LSPWV HFH+NKE + +K I+ QSIVDAL+GNY+ FREGK  PRLFMT Q
Sbjct: 1065 KETKGPKLSPWVSHFHINKERMAKKGIHAQSIVDALSGNYHLFREGKMLPRLFMTCQ 1121


>gb|ONK73338.1| uncharacterized protein A4U43_C04F29910 [Asparagus officinalis]
          Length = 1445

 Score = 1052 bits (2720), Expect = 0.0
 Identities = 539/775 (69%), Positives = 630/775 (81%), Gaps = 4/775 (0%)
 Frame = -3

Query: 2398 LNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIGDPKIQL 2219
            L+ ++LH+N  S  + + Y S +ND+PS TGLKW+KEVVLSKRSDNTFR+IMIGDPK++ 
Sbjct: 273  LSPAQLHNNSTSAEEQAAY-SVKNDKPSCTGLKWVKEVVLSKRSDNTFRVIMIGDPKMKT 331

Query: 2218 GEIGLPQDVSRTLYISEHVNAHNVEKLKSSCLLHLISKPELKARRKGKLIFIHSSDQLQV 2039
            GEIGLP+D+   LYI+EHVN HNV+KLK  C LH+ SK EL ARRK KLI IH+S QLQV
Sbjct: 332  GEIGLPRDICENLYIAEHVNNHNVKKLKEVCELHVRSKRELHARRKDKLILIHNSKQLQV 391

Query: 2038 GDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCL 1859
            GDT N+ LEDGDIIMVNRNPSVHPHSLLALSVKILPV+  VSINPLCCAPLLGDFDGDCL
Sbjct: 392  GDTFNKPLEDGDIIMVNRNPSVHPHSLLALSVKILPVKDVVSINPLCCAPLLGDFDGDCL 451

Query: 1858 HGFVPQSVRARVXXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQ 1679
            HGFVPQS+ ARV           LFN Q G+SLLSLTHDSLTAAHLLME E+F +K EMQ
Sbjct: 452  HGFVPQSIGARVELKELLSLDSQLFNYQGGQSLLSLTHDSLTAAHLLMEDEIFLNKREMQ 511

Query: 1678 QLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSP 1499
            QL ML P   +FP +IKAP ++MP+WTG QLFSM+LP++M+F+  SS  E+  GDLVP  
Sbjct: 512  QLNMLCPWNLEFPTVIKAPTIEMPQWTGWQLFSMLLPIDMDFAPASSSFEIRKGDLVPPS 571

Query: 1498 GV----SFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTS 1331
            GV    S SS+  IS +FSRMFECYG KA+ YLF FQE+LCEYLTMRGLSVSLHD+YL S
Sbjct: 572  GVSSSSSSSSQKIISEIFSRMFECYGGKAHEYLFHFQEILCEYLTMRGLSVSLHDIYLAS 631

Query: 1330 DPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETDDLSHTLNISNFARER 1151
            + YTR KLI+EVS ALEEAK S  F+ELMLEP +G ++K HDE+DDLSHT+++SN  R  
Sbjct: 632  NAYTRTKLINEVSCALEEAKGSFRFSELMLEPMVGFLLKEHDESDDLSHTIDVSNITR-T 690

Query: 1150 RPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLSA 971
            RP+S+ASIAKFKD+FRDLQ+VV +Y+S++NSLFTMM AGSKGSL K           LS 
Sbjct: 691  RPMSEASIAKFKDIFRDLQNVVHHYVSADNSLFTMMRAGSKGSLLKLVQQGLCLGLQLST 750

Query: 970  KPLPFNIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVH 791
            K LPF IPL+LSC  WN+HKAF+RS+  +D S+ S GENSYAVIEASFLDGL+PLECF H
Sbjct: 751  KTLPFTIPLELSCFAWNEHKAFNRSVSEKDESDFSRGENSYAVIEASFLDGLNPLECFFH 810

Query: 790  ALSCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCE 611
            AL+CR+NMFSENA++PGTLTRKIMF+MRDI VAYDGTVRN+YGQQ+VQFS+ SP +KS  
Sbjct: 811  ALACRANMFSENAQVPGTLTRKIMFHMRDIYVAYDGTVRNSYGQQVVQFSHQSPYEKS-- 868

Query: 610  DCDHSHFSIGEDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLEC 431
               +S FSI EDS   +L G PVGSLAACSISEAAYGALD PVNSLESSPLLNLKKVLEC
Sbjct: 869  --RNSQFSI-EDS---QLSGQPVGSLAACSISEAAYGALDTPVNSLESSPLLNLKKVLEC 922

Query: 430  APTRTSVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKG 251
             P +TS  RTASL LSNKL++LNYGFEYGALAV++HLD+VFFSD+VTSVMIFY+A D K 
Sbjct: 923  VPGKTSTERTASLVLSNKLRKLNYGFEYGALAVRDHLDKVFFSDVVTSVMIFYAARDIKE 982

Query: 250  TKGMRLSPWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFREGKKFPRLFMTSQ 86
            TKG +LSPWV HFH+NKE + +K I+ QSIVDAL+GNY+ FREGK  PRLFMT Q
Sbjct: 983  TKGPKLSPWVSHFHINKERMAKKGIHAQSIVDALSGNYHLFREGKMLPRLFMTCQ 1037


>ref|XP_017700627.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Phoenix dactylifera]
 ref|XP_017700628.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Phoenix dactylifera]
          Length = 1567

 Score =  889 bits (2296), Expect = 0.0
 Identities = 456/775 (58%), Positives = 572/775 (73%), Gaps = 2/775 (0%)
 Frame = -3

Query: 2404 DCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIGDPKI 2225
            DCLNVSKL +  +S GD S            +GLKW+KEVVLSKRSDN FRM M+GDPKI
Sbjct: 358  DCLNVSKLRARNSSNGDSS----------CLSGLKWLKEVVLSKRSDNVFRMTMVGDPKI 407

Query: 2224 QLGEIGLPQDVSRTLYISEHVNAHNVEKLKSSCLLHLISKPELKARRKGKLIFIHSSDQL 2045
            +LG+IG+P D+S+ +YISEHVN +N+EKL  SC LHL++K EL +R KG+L  +  S+QL
Sbjct: 408  KLGQIGIPFDISQNMYISEHVNTYNLEKLNMSCNLHLLTKEELHSRSKGQLTSVRKSNQL 467

Query: 2044 QVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGD 1865
            QVGDT+ R LE+ D+I+VNR PSVH HSL+ALSVKILP++S VSINPLCCAPLLGDFDGD
Sbjct: 468  QVGDTIYRPLENDDLILVNRPPSVHQHSLIALSVKILPIQSVVSINPLCCAPLLGDFDGD 527

Query: 1864 CLHGFVPQSVRARVXXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFE 1685
            CLHG+VPQSV  RV           L N QDGRSL+SL+HDSLTAAHLL    VF +KFE
Sbjct: 528  CLHGYVPQSVHCRVELGELVSLDHQLLNAQDGRSLVSLSHDSLTAAHLLTNSIVFLNKFE 587

Query: 1684 MQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVP 1505
            MQQ EML P +S  P+IIKAP  + P WTG+QLFSM+LP  M+FS  S+ + +  G+++ 
Sbjct: 588  MQQFEMLCPSQSPSPSIIKAPTTRSPLWTGQQLFSMLLPPTMDFSMGSNKIPISKGEVLS 647

Query: 1504 SPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDP 1325
            + G SF  +N  S +FS MF+CYG KA ++LFS QEVLCEYLT RGLSVSL D+YL+SD 
Sbjct: 648  TSGASFWLQNTTSSIFSSMFKCYGRKALDFLFSAQEVLCEYLTTRGLSVSLGDVYLSSDL 707

Query: 1324 YTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETDDLSHTLNISNFARERRP 1145
            Y+R K+ DEV + LEEA+ +CH  +LML+PE+  ++K+HD T       N  N+AR ++ 
Sbjct: 708  YSRRKMTDEVCYGLEEAEDACHIKQLMLDPEMEFLLKSHDGT-----CRNPYNYARNQKH 762

Query: 1144 ISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLSAKP 965
            ISQ SIA F+D+F DLQ+V+  YIS +NS+  M++AGSKGSL+K           L A P
Sbjct: 763  ISQFSIAAFRDVFYDLQNVIHQYISRDNSMLAMIHAGSKGSLSKLVQQGACLGLQLPASP 822

Query: 964  LPFNIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHAL 785
            LPF IP +LSC   N  K  +  +  QD      G+NSYAV++ASFLDGL+PLECFVHA+
Sbjct: 823  LPFRIPRRLSCVSLNAQKKLEYGI-PQDVVECVRGQNSYAVVKASFLDGLNPLECFVHAI 881

Query: 784  SCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDC 605
            + RSNMFSENAELPG LTRK+MFYMRD+  AYDGTVR+ YGQQLVQFSY  P + S E  
Sbjct: 882  TGRSNMFSENAELPGMLTRKLMFYMRDLYAAYDGTVRSTYGQQLVQFSYNIPGESSSEQG 941

Query: 604  DHSHFSIGEDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAP 425
            D    +  +D+  +RLGG PVGS A+C+ISEAAYGALDHP+NSLE+SPLLNLKKVLEC  
Sbjct: 942  DSCTMNGEKDAENNRLGGQPVGSWASCAISEAAYGALDHPMNSLEASPLLNLKKVLECGK 1001

Query: 424  TRTSVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTK 245
            +R SV+++AS+ LS  LK+  YGFEYGAL VKNHLDRV FSD+VT+V+IFY+  D +GTK
Sbjct: 1002 SRASVDKSASIFLSKGLKKQRYGFEYGALEVKNHLDRVLFSDLVTTVLIFYAGLDVQGTK 1061

Query: 244  GMRLSPWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFRE--GKKFPRLFMTSQ 86
                SPW+ HFHV+KE ++RKR+ VQ+I+D L+ NYN  RE  G + P L +TS+
Sbjct: 1062 ---FSPWITHFHVSKERMMRKRLRVQTIIDQLSANYNFVRETVGTELPGLRITSK 1113


>ref|XP_017700629.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
            [Phoenix dactylifera]
          Length = 1566

 Score =  882 bits (2279), Expect = 0.0
 Identities = 455/775 (58%), Positives = 571/775 (73%), Gaps = 2/775 (0%)
 Frame = -3

Query: 2404 DCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIGDPKI 2225
            DCLNVSKL +  +S GD S            +GLKW+KEVVLSKRSDN FRM M+GDPKI
Sbjct: 358  DCLNVSKLRARNSSNGDSS----------CLSGLKWLKEVVLSKRSDNVFRMTMVGDPKI 407

Query: 2224 QLGEIGLPQDVSRTLYISEHVNAHNVEKLKSSCLLHLISKPELKARRKGKLIFIHSSDQL 2045
            +LG+IG+P D+S+ +YISEHVN +N+EKL  SC LHL++K EL +R KG+L  +  S+QL
Sbjct: 408  KLGQIGIPFDISQNMYISEHVNTYNLEKLNMSCNLHLLTKEELHSRSKGQLTSVRKSNQL 467

Query: 2044 QVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGD 1865
            QVGDT+ R LE+ D+I+VNR PSVH HSL+ALSVKILP++S VSINPLCCAPLLGDFDGD
Sbjct: 468  QVGDTIYRPLENDDLILVNRPPSVHQHSLIALSVKILPIQSVVSINPLCCAPLLGDFDGD 527

Query: 1864 CLHGFVPQSVRARVXXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFE 1685
            CLHG+VPQSV  RV           L N QDGRSL+SL+HDSLTAAHLL    VF +KFE
Sbjct: 528  CLHGYVPQSVHCRVELGELVSLDHQLLNAQDGRSLVSLSHDSLTAAHLLTNSIVFLNKFE 587

Query: 1684 MQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVP 1505
            MQQ EML P +S  P+IIKAP  + P WTG+QLFSM+LP  M+FS  S+ + +  G+++ 
Sbjct: 588  MQQFEMLCPSQSPSPSIIKAPTTRSPLWTGQQLFSMLLPPTMDFSMGSNKIPISKGEVLS 647

Query: 1504 SPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDP 1325
            + G SF  +N  S +FS MF+CYG KA ++LFS QEVLCEYLT RGLSVSL D+YL+SD 
Sbjct: 648  TSGASFWLQNTTSSIFSSMFKCYGRKALDFLFSAQEVLCEYLTTRGLSVSLGDVYLSSDL 707

Query: 1324 YTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETDDLSHTLNISNFARERRP 1145
            Y+R K+ DEV + LEEA+ +CH  +LML+PE+  ++K+HD T       N  N+AR ++ 
Sbjct: 708  YSRRKMTDEVCYGLEEAEDACHIKQLMLDPEMEFLLKSHDGT-----CRNPYNYARNQKH 762

Query: 1144 ISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLSAKP 965
            ISQ SIA F+D+F DLQ+V+  YIS +NS+  M++AGSKGSL+K           L A P
Sbjct: 763  ISQFSIAAFRDVFYDLQNVIHQYISRDNSMLAMIHAGSKGSLSKLVQQGACLGLQLPASP 822

Query: 964  LPFNIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHAL 785
            LPF IP +LSC   N  K  +  +  QD      G+NSYAV++ASFLDGL+PLECFVHA+
Sbjct: 823  LPFRIPRRLSCVSLNAQKKLEYGI-PQDVVECVRGQNSYAVVKASFLDGLNPLECFVHAI 881

Query: 784  SCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDC 605
            + RSNMFSENAELPG LTRK+MFYMRD+  AYDGTVR+ YGQQLVQFSY  P + S E  
Sbjct: 882  TGRSNMFSENAELPGMLTRKLMFYMRDLYAAYDGTVRSTYGQQLVQFSYNIPGESSSEQG 941

Query: 604  DHSHFSIGEDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAP 425
            D    +  +D+  +RLGG PVGS A+C+ISEAAYGALDHP+NSLE+SPLLNL KVLEC  
Sbjct: 942  DSCTMNGEKDAENNRLGGQPVGSWASCAISEAAYGALDHPMNSLEASPLLNL-KVLECGK 1000

Query: 424  TRTSVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTK 245
            +R SV+++AS+ LS  LK+  YGFEYGAL VKNHLDRV FSD+VT+V+IFY+  D +GTK
Sbjct: 1001 SRASVDKSASIFLSKGLKKQRYGFEYGALEVKNHLDRVLFSDLVTTVLIFYAGLDVQGTK 1060

Query: 244  GMRLSPWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFRE--GKKFPRLFMTSQ 86
                SPW+ HFHV+KE ++RKR+ VQ+I+D L+ NYN  RE  G + P L +TS+
Sbjct: 1061 ---FSPWITHFHVSKERMMRKRLRVQTIIDQLSANYNFVRETVGTELPGLRITSK 1112


>ref|XP_019705595.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Elaeis
            guineensis]
          Length = 1569

 Score =  880 bits (2274), Expect = 0.0
 Identities = 451/776 (58%), Positives = 574/776 (73%), Gaps = 3/776 (0%)
 Frame = -3

Query: 2404 DCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIGDPKI 2225
            DCLNVSKL +  +S GD S            +GLKW+K+VVLSKRSDN FRM MIGDPKI
Sbjct: 358  DCLNVSKLRTRNSSNGDSS----------CLSGLKWLKDVVLSKRSDNAFRMTMIGDPKI 407

Query: 2224 QLGEIGLPQDVSRTLYISEHVNAHNVEKLKSSCLLHLISKPELKARRKGKLIFIHSSDQL 2045
            +LG+IG+P D+S+ L +SEHVNA+N+EKL  SC LHL++  EL  R KG+L  +  S+QL
Sbjct: 408  KLGQIGIPFDLSQNLCVSEHVNAYNLEKLNMSCNLHLLTNEELHTRSKGRLTSVRKSNQL 467

Query: 2044 QVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGD 1865
            Q+GDT+ R LE+GD+I+VNR PSVH HSL+ALS KILP++S VSINPLCCAPLLGDFDGD
Sbjct: 468  QIGDTIYRPLENGDLILVNRPPSVHQHSLIALSAKILPIQSVVSINPLCCAPLLGDFDGD 527

Query: 1864 CLHGFVPQSVRARVXXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFE 1685
            CLHG+VPQSV  RV           L N QDGRSL+SL+HDSLTAAHLL    VF +KFE
Sbjct: 528  CLHGYVPQSVHCRVELGELVSLDHQLLNAQDGRSLVSLSHDSLTAAHLLTSNIVFLNKFE 587

Query: 1684 MQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVP 1505
            MQQLEML   +  FP+IIKAP  + P WTG+QLFSM+LP  M+FS   + +++  G+++ 
Sbjct: 588  MQQLEMLCFSRLPFPSIIKAPTTRFPLWTGQQLFSMVLPPAMDFSMGPNKIQISKGEVLS 647

Query: 1504 SPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDP 1325
            + GVS   +N  S +FS MF+CYG KA ++LFS QEVLCEYLT RGLSVSL D+YL+SD 
Sbjct: 648  TSGVSSWLQNTTSSIFSSMFKCYGRKALDFLFSAQEVLCEYLTTRGLSVSLGDVYLSSDL 707

Query: 1324 YTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETDDLSHTLNISNFARERRP 1145
            Y+R K+ DEV + LEEA+ +CH  ++ML+PE+  + K+HD T       N+ N+AR R+ 
Sbjct: 708  YSRRKMTDEVFYGLEEAEDACHIKQIMLDPEMEFLFKSHDGT-----YRNLYNYARNRKH 762

Query: 1144 ISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLSAKP 965
            ISQ S+A F+D+F DLQ+V+  YIS +NS+  M++AGSKGSL+K           L + P
Sbjct: 763  ISQFSVAAFRDVFYDLQNVIHQYISRDNSMLAMIHAGSKGSLSKLVQQGACLGLQLPSSP 822

Query: 964  LPFNIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHAL 785
            LPF IP +LSC  WN  K  +  +  QD    + G+NSYAV++ASFLDGL+PLECFVHA+
Sbjct: 823  LPFRIPRRLSCVSWNAQKKSEHGI-PQDVVECAGGQNSYAVVKASFLDGLNPLECFVHAI 881

Query: 784  SCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDC 605
            + RSNMFSENAELPG LTRK+MFYMRD+  AYDGTVR+ YGQQLVQFSY  P K S E+ 
Sbjct: 882  TGRSNMFSENAELPGMLTRKLMFYMRDLYAAYDGTVRSTYGQQLVQFSYNIPGKSSGEEG 941

Query: 604  DHSHFSIGE-DSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECA 428
            D S  + GE D+  + LGG PVGS AAC+ISEAAYGALDHP+NSLE+SPL+NLKKVL+C 
Sbjct: 942  D-SCMTYGENDAENNSLGGQPVGSWAACAISEAAYGALDHPMNSLEASPLMNLKKVLDCG 1000

Query: 427  PTRTSVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGT 248
             T+ S++++AS+ LS  LK+  YGFEYGAL VKNHLDRV FSD+VT+++IFY+  D +GT
Sbjct: 1001 KTKASMDKSASIFLSKGLKKQRYGFEYGALEVKNHLDRVLFSDLVTTILIFYAGLDVQGT 1060

Query: 247  KGMRLSPWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFRE--GKKFPRLFMTSQ 86
            K    SPW+ HFHV+KE ++RKR+  Q+I+D L+GNYN  RE  G + P L ++S+
Sbjct: 1061 K---FSPWITHFHVSKERMMRKRLRAQTIIDQLSGNYNFVRETVGTELPVLHISSK 1113


>ref|XP_009411452.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2 [Musa
            acuminata subsp. malaccensis]
          Length = 1562

 Score =  790 bits (2039), Expect = 0.0
 Identities = 415/775 (53%), Positives = 540/775 (69%), Gaps = 2/775 (0%)
 Frame = -3

Query: 2404 DCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIGDPKI 2225
            DC N SKLH++ +S GD            S++G++W+K+VVLSKR+DN FRM M+GDPKI
Sbjct: 355  DCFNASKLHASSSSRGD------------STSGIRWLKDVVLSKRTDNVFRMTMVGDPKI 402

Query: 2224 QLGEIGLPQDVSRTLYISEHVNAHNVEKLKSSCLLHLISKPELKARRKGKLIFIHSSDQL 2045
            +L EIG+P D+S +L ++E VN++N+EKL  SC LHL+ K  L  R KG+L  +H ++QL
Sbjct: 403  KLQEIGIPFDISESLIVAEQVNSYNLEKLNMSCNLHLLRKEGLNTRSKGQLTSLHKTNQL 462

Query: 2044 QVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGD 1865
            QVGD ++R LE+GDII+VNR PSVH HSL+ALSV ILP++S +SINPLCCAPLLGDFDGD
Sbjct: 463  QVGDIVSRPLENGDIILVNRPPSVHQHSLIALSVMILPIQSVISINPLCCAPLLGDFDGD 522

Query: 1864 CLHGFVPQSVRARVXXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFE 1685
            CLHG+VPQS+  RV           LFN QDGRSL+SLTHDSLTAA+LL     F +K +
Sbjct: 523  CLHGYVPQSIGCRVELQELLSLDHQLFNAQDGRSLVSLTHDSLTAAYLLTANREFLNKVD 582

Query: 1684 MQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVP 1505
            MQQL ML P     PA++K P  Q+P WTG QLFSM+LP  M+F   S  + +  G+++ 
Sbjct: 583  MQQLAMLCPFPMPPPAVVKTPKFQIPLWTGEQLFSMLLPPTMDFGVNSRNM-ISKGEVMA 641

Query: 1504 SPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDP 1325
            S G SF  +N  +GLF+ MF+ YG KA +YL   QE+LCEYLT+RGLSVSL D+YL+SD 
Sbjct: 642  SLGGSFWLQNTTTGLFTTMFKHYGRKALDYLCCSQELLCEYLTLRGLSVSLGDVYLSSDS 701

Query: 1324 YTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETDDLSHTLNISNFARERRP 1145
            Y+R K++DE+ F LEEA+ +C   +LMLEPE+ I+   + + D L   ++    A ER  
Sbjct: 702  YSRLKMMDEIYFGLEEAEDACQVMQLMLEPEMEILRNQNKDEDTLD-CISQYKIASERTC 760

Query: 1144 ISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLSAKP 965
            +SQ SIA FK+++ DL S +  +I+ +NS+  M+ AGSKGSL K           L A P
Sbjct: 761  VSQVSIAAFKNVYHDLLSQIYQFINKDNSMLEMIDAGSKGSLVKLIQQGACLGLQLFAHP 820

Query: 964  LPFNIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHAL 785
            LPF +P KL+C  WN  KA D   G+ D + SS G++SYAVI  SFLDGL+PLECFVHA+
Sbjct: 821  LPFTVPSKLNCCMWNNLKALDG--GISDAAKSSCGQSSYAVIGTSFLDGLNPLECFVHAI 878

Query: 784  SCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDC 605
              R+N+F+ENAELPGTLTRK+MFYMRD+ +AYDGTVR+AYGQQ+V+FSY   E  S E  
Sbjct: 879  CGRANLFTENAELPGTLTRKLMFYMRDLYLAYDGTVRSAYGQQIVEFSYSILE-DSTEGG 937

Query: 604  DHSHFSIGEDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAP 425
            +      G+D+    LGG PVGS AACSISEAAYG+L+ P+NSLE SPL+ LK VL+C  
Sbjct: 938  ESCVAYDGKDAEYTGLGGEPVGSWAACSISEAAYGSLEFPMNSLEYSPLMKLKMVLDCCK 997

Query: 424  TRTSVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTK 245
            +  S N TA L LS +L    YG EYGAL VKNHL+RV F +++ +VMI Y  HD +GT 
Sbjct: 998  SNASTNHTALLFLSKRLHGWRYGCEYGALEVKNHLERVCFFNLIITVMILYDGHDVQGT- 1056

Query: 244  GMRLSPWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFRE--GKKFPRLFMTSQ 86
                SPW++HFHV+K+ +LR+R+NVQ + + L  +YNC RE      PRL   S+
Sbjct: 1057 --NFSPWIMHFHVSKDKMLRRRLNVQLVKNELIKHYNCMRERMNPMLPRLCFVSK 1109


>ref|XP_009411449.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Musa
            acuminata subsp. malaccensis]
 ref|XP_009411450.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Musa
            acuminata subsp. malaccensis]
          Length = 1569

 Score =  790 bits (2039), Expect = 0.0
 Identities = 415/775 (53%), Positives = 540/775 (69%), Gaps = 2/775 (0%)
 Frame = -3

Query: 2404 DCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIGDPKI 2225
            DC N SKLH++ +S GD            S++G++W+K+VVLSKR+DN FRM M+GDPKI
Sbjct: 362  DCFNASKLHASSSSRGD------------STSGIRWLKDVVLSKRTDNVFRMTMVGDPKI 409

Query: 2224 QLGEIGLPQDVSRTLYISEHVNAHNVEKLKSSCLLHLISKPELKARRKGKLIFIHSSDQL 2045
            +L EIG+P D+S +L ++E VN++N+EKL  SC LHL+ K  L  R KG+L  +H ++QL
Sbjct: 410  KLQEIGIPFDISESLIVAEQVNSYNLEKLNMSCNLHLLRKEGLNTRSKGQLTSLHKTNQL 469

Query: 2044 QVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGD 1865
            QVGD ++R LE+GDII+VNR PSVH HSL+ALSV ILP++S +SINPLCCAPLLGDFDGD
Sbjct: 470  QVGDIVSRPLENGDIILVNRPPSVHQHSLIALSVMILPIQSVISINPLCCAPLLGDFDGD 529

Query: 1864 CLHGFVPQSVRARVXXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFE 1685
            CLHG+VPQS+  RV           LFN QDGRSL+SLTHDSLTAA+LL     F +K +
Sbjct: 530  CLHGYVPQSIGCRVELQELLSLDHQLFNAQDGRSLVSLTHDSLTAAYLLTANREFLNKVD 589

Query: 1684 MQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVP 1505
            MQQL ML P     PA++K P  Q+P WTG QLFSM+LP  M+F   S  + +  G+++ 
Sbjct: 590  MQQLAMLCPFPMPPPAVVKTPKFQIPLWTGEQLFSMLLPPTMDFGVNSRNM-ISKGEVMA 648

Query: 1504 SPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDP 1325
            S G SF  +N  +GLF+ MF+ YG KA +YL   QE+LCEYLT+RGLSVSL D+YL+SD 
Sbjct: 649  SLGGSFWLQNTTTGLFTTMFKHYGRKALDYLCCSQELLCEYLTLRGLSVSLGDVYLSSDS 708

Query: 1324 YTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETDDLSHTLNISNFARERRP 1145
            Y+R K++DE+ F LEEA+ +C   +LMLEPE+ I+   + + D L   ++    A ER  
Sbjct: 709  YSRLKMMDEIYFGLEEAEDACQVMQLMLEPEMEILRNQNKDEDTLD-CISQYKIASERTC 767

Query: 1144 ISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLSAKP 965
            +SQ SIA FK+++ DL S +  +I+ +NS+  M+ AGSKGSL K           L A P
Sbjct: 768  VSQVSIAAFKNVYHDLLSQIYQFINKDNSMLEMIDAGSKGSLVKLIQQGACLGLQLFAHP 827

Query: 964  LPFNIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHAL 785
            LPF +P KL+C  WN  KA D   G+ D + SS G++SYAVI  SFLDGL+PLECFVHA+
Sbjct: 828  LPFTVPSKLNCCMWNNLKALDG--GISDAAKSSCGQSSYAVIGTSFLDGLNPLECFVHAI 885

Query: 784  SCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDC 605
              R+N+F+ENAELPGTLTRK+MFYMRD+ +AYDGTVR+AYGQQ+V+FSY   E  S E  
Sbjct: 886  CGRANLFTENAELPGTLTRKLMFYMRDLYLAYDGTVRSAYGQQIVEFSYSILE-DSTEGG 944

Query: 604  DHSHFSIGEDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAP 425
            +      G+D+    LGG PVGS AACSISEAAYG+L+ P+NSLE SPL+ LK VL+C  
Sbjct: 945  ESCVAYDGKDAEYTGLGGEPVGSWAACSISEAAYGSLEFPMNSLEYSPLMKLKMVLDCCK 1004

Query: 424  TRTSVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTK 245
            +  S N TA L LS +L    YG EYGAL VKNHL+RV F +++ +VMI Y  HD +GT 
Sbjct: 1005 SNASTNHTALLFLSKRLHGWRYGCEYGALEVKNHLERVCFFNLIITVMILYDGHDVQGT- 1063

Query: 244  GMRLSPWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFRE--GKKFPRLFMTSQ 86
                SPW++HFHV+K+ +LR+R+NVQ + + L  +YNC RE      PRL   S+
Sbjct: 1064 --NFSPWIMHFHVSKDKMLRRRLNVQLVKNELIKHYNCMRERMNPMLPRLCFVSK 1116


>ref|XP_020084502.1| DNA-directed RNA polymerase IV subunit 1 isoform X2 [Ananas comosus]
          Length = 1240

 Score =  771 bits (1991), Expect = 0.0
 Identities = 400/766 (52%), Positives = 528/766 (68%), Gaps = 5/766 (0%)
 Frame = -3

Query: 2404 DCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTG---LKWIKEVVLSKRSDNTFRMIMIGD 2234
            DCLN SKLHS            S  N +P S+G   LKW+KEV+LSKRSD  FR++M+GD
Sbjct: 56   DCLNASKLHS------------STSNGEPISSGVSGLKWLKEVILSKRSDYAFRLVMVGD 103

Query: 2233 PKIQLGEIGLPQDVSRTLYISEHVNAHNVEKLKSSCLLHLISKPELKARRKGKLIFIHSS 2054
            PKI+L EIG+P  ++  L IS+HVN++N+EKL +SC LHL++K EL ARR G+LI +   
Sbjct: 104  PKIKLDEIGIPLSLAENLLISDHVNSYNLEKLNTSCNLHLLNKEELHARRDGQLISVRKP 163

Query: 2053 DQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDF 1874
            DQLQ+GD   R LE+GD+I++NR PSVH HSL+ALSVK+LP+  A+SINPLCCAPLLGDF
Sbjct: 164  DQLQIGDIFYRPLENGDLILINRPPSVHQHSLIALSVKVLPIHFAISINPLCCAPLLGDF 223

Query: 1873 DGDCLHGFVPQSVRARVXXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFS 1694
            DGDCLHG++PQS+ +RV           L N QDGRSL+SL+HDSL AA+LL   +VF S
Sbjct: 224  DGDCLHGYIPQSIPSRVELRELVGLDQQLLNSQDGRSLVSLSHDSLVAAYLLTGTDVFLS 283

Query: 1693 KFEMQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGD 1514
            K+EMQ LEML P    FP+IIK P    P WTG+QLF M+LP  ++FS  S  + + +G+
Sbjct: 284  KYEMQHLEMLCPSHMPFPSIIKYPNFGSPLWTGQQLFGMLLPPGIDFSVDSKKLHIIDGE 343

Query: 1513 LVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLT 1334
            ++ SP +SF  ++  S +FS MF+ YG +A ++L S QE+LCEYLTMRGLSVSL D+YL 
Sbjct: 344  VLSSPQMSFWLQSSTSSIFSTMFKSYGRRALDFLCSAQELLCEYLTMRGLSVSLSDLYLA 403

Query: 1333 SDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETDDLSHTLNISNFARE 1154
            SD Y+R K+ +EV+F L+EA+ +C   +L+L+P I  ++ + DE +D S++++  +F   
Sbjct: 404  SDFYSRTKMTEEVNFGLDEAEDACRVKQLLLDPRIEFLLSSLDECEDSSYSVSHYHFLSN 463

Query: 1153 RRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLS 974
               I +ASIA FKD+F D+Q  V +Y+S +NS+ +M+ +GSKGSL+K           LS
Sbjct: 464  NLQIRKASIAAFKDVFSDIQRTVYHYVSKDNSMLSMIQSGSKGSLSKLAQQSLCLGLQLS 523

Query: 973  AKPLPFNIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFV 794
            A   PF IP +LSC  WN+ KA +   G QD     E  N YAVI +SFL GL+PLECF+
Sbjct: 524  ASTFPFRIPQQLSCSWWNKQKALE--CGDQDAIRCEERRNFYAVIRSSFLQGLNPLECFL 581

Query: 793  HALSCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSC 614
            HA+S R+N F ENAE+PGTLTRK+ FY+RD+ VAYDGTVR+AYGQQ+VQFSY   ++   
Sbjct: 582  HAISGRANFFGENAEIPGTLTRKLSFYLRDLYVAYDGTVRSAYGQQIVQFSYDISDEIFH 641

Query: 613  EDCDHSHFSIGEDSACDRLG--GHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKV 440
            ED  HS   I  D   ++    G PVGS AA SISEAAYG L+HPVNSLE SPL+ LK++
Sbjct: 642  EDA-HSRI-ISNDHIVEKYNGLGAPVGSWAASSISEAAYGGLEHPVNSLEDSPLMKLKEI 699

Query: 439  LECAPTRTSVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHD 260
            LEC   RT  +    L LS  L+R  YGFEYGAL VKNHL+   FS++V +VMI Y    
Sbjct: 700  LECGKRRTYGDHAGILVLSKGLQRYRYGFEYGALEVKNHLEITLFSEMVNTVMILYEC-- 757

Query: 259  AKGTKGMRLSPWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFRE 122
                +  ++SPW  HFH++KE + +KR+ VQ ++D L  NY+  RE
Sbjct: 758  --PLQRRKISPWSTHFHISKETLKKKRLQVQRVIDKLMENYSLMRE 801


>ref|XP_020084500.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Ananas comosus]
 ref|XP_020084501.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Ananas comosus]
          Length = 1545

 Score =  771 bits (1991), Expect = 0.0
 Identities = 400/766 (52%), Positives = 528/766 (68%), Gaps = 5/766 (0%)
 Frame = -3

Query: 2404 DCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTG---LKWIKEVVLSKRSDNTFRMIMIGD 2234
            DCLN SKLHS            S  N +P S+G   LKW+KEV+LSKRSD  FR++M+GD
Sbjct: 361  DCLNASKLHS------------STSNGEPISSGVSGLKWLKEVILSKRSDYAFRLVMVGD 408

Query: 2233 PKIQLGEIGLPQDVSRTLYISEHVNAHNVEKLKSSCLLHLISKPELKARRKGKLIFIHSS 2054
            PKI+L EIG+P  ++  L IS+HVN++N+EKL +SC LHL++K EL ARR G+LI +   
Sbjct: 409  PKIKLDEIGIPLSLAENLLISDHVNSYNLEKLNTSCNLHLLNKEELHARRDGQLISVRKP 468

Query: 2053 DQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDF 1874
            DQLQ+GD   R LE+GD+I++NR PSVH HSL+ALSVK+LP+  A+SINPLCCAPLLGDF
Sbjct: 469  DQLQIGDIFYRPLENGDLILINRPPSVHQHSLIALSVKVLPIHFAISINPLCCAPLLGDF 528

Query: 1873 DGDCLHGFVPQSVRARVXXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFS 1694
            DGDCLHG++PQS+ +RV           L N QDGRSL+SL+HDSL AA+LL   +VF S
Sbjct: 529  DGDCLHGYIPQSIPSRVELRELVGLDQQLLNSQDGRSLVSLSHDSLVAAYLLTGTDVFLS 588

Query: 1693 KFEMQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGD 1514
            K+EMQ LEML P    FP+IIK P    P WTG+QLF M+LP  ++FS  S  + + +G+
Sbjct: 589  KYEMQHLEMLCPSHMPFPSIIKYPNFGSPLWTGQQLFGMLLPPGIDFSVDSKKLHIIDGE 648

Query: 1513 LVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLT 1334
            ++ SP +SF  ++  S +FS MF+ YG +A ++L S QE+LCEYLTMRGLSVSL D+YL 
Sbjct: 649  VLSSPQMSFWLQSSTSSIFSTMFKSYGRRALDFLCSAQELLCEYLTMRGLSVSLSDLYLA 708

Query: 1333 SDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETDDLSHTLNISNFARE 1154
            SD Y+R K+ +EV+F L+EA+ +C   +L+L+P I  ++ + DE +D S++++  +F   
Sbjct: 709  SDFYSRTKMTEEVNFGLDEAEDACRVKQLLLDPRIEFLLSSLDECEDSSYSVSHYHFLSN 768

Query: 1153 RRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLS 974
               I +ASIA FKD+F D+Q  V +Y+S +NS+ +M+ +GSKGSL+K           LS
Sbjct: 769  NLQIRKASIAAFKDVFSDIQRTVYHYVSKDNSMLSMIQSGSKGSLSKLAQQSLCLGLQLS 828

Query: 973  AKPLPFNIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFV 794
            A   PF IP +LSC  WN+ KA +   G QD     E  N YAVI +SFL GL+PLECF+
Sbjct: 829  ASTFPFRIPQQLSCSWWNKQKALE--CGDQDAIRCEERRNFYAVIRSSFLQGLNPLECFL 886

Query: 793  HALSCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSC 614
            HA+S R+N F ENAE+PGTLTRK+ FY+RD+ VAYDGTVR+AYGQQ+VQFSY   ++   
Sbjct: 887  HAISGRANFFGENAEIPGTLTRKLSFYLRDLYVAYDGTVRSAYGQQIVQFSYDISDEIFH 946

Query: 613  EDCDHSHFSIGEDSACDRLG--GHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKV 440
            ED  HS   I  D   ++    G PVGS AA SISEAAYG L+HPVNSLE SPL+ LK++
Sbjct: 947  EDA-HSRI-ISNDHIVEKYNGLGAPVGSWAASSISEAAYGGLEHPVNSLEDSPLMKLKEI 1004

Query: 439  LECAPTRTSVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHD 260
            LEC   RT  +    L LS  L+R  YGFEYGAL VKNHL+   FS++V +VMI Y    
Sbjct: 1005 LECGKRRTYGDHAGILVLSKGLQRYRYGFEYGALEVKNHLEITLFSEMVNTVMILYEC-- 1062

Query: 259  AKGTKGMRLSPWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFRE 122
                +  ++SPW  HFH++KE + +KR+ VQ ++D L  NY+  RE
Sbjct: 1063 --PLQRRKISPWSTHFHISKETLKKKRLQVQRVIDKLMENYSLMRE 1106


>gb|OAY84267.1| DNA-directed RNA polymerase IV subunit 1 [Ananas comosus]
          Length = 1556

 Score =  761 bits (1964), Expect = 0.0
 Identities = 391/744 (52%), Positives = 519/744 (69%), Gaps = 5/744 (0%)
 Frame = -3

Query: 2338 SKQNDQPSSTG---LKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPQDVSRTLYISE 2168
            S  N +P S+G   LKW+KEV+LSKRSD  FR++M+GDPKI+L EIG+P  ++  L IS+
Sbjct: 382  STSNGEPISSGVSGLKWLKEVILSKRSDYAFRLVMVGDPKIKLDEIGIPLSLAENLLISD 441

Query: 2167 HVNAHNVEKLKSSCLLHLISKPELKARRKGKLIFIHSSDQLQVGDTLNRSLEDGDIIMVN 1988
            HVN++N+EKL +SC LHL++K EL ARR G+LI +   DQLQ+GD   R LE+GD+I++N
Sbjct: 442  HVNSYNLEKLNTSCNLHLLNKEELHARRDGQLISVRKPDQLQIGDIFYRPLENGDLILIN 501

Query: 1987 RNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQSVRARVXXXXX 1808
            R PSVH HSL+ALSVK+LP+  A+SINPLCCAPLLGDFDGDCLHG++PQS+ +RV     
Sbjct: 502  RPPSVHQHSLIALSVKVLPIHFAISINPLCCAPLLGDFDGDCLHGYIPQSIPSRVELREL 561

Query: 1807 XXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEMLFPCKSQFPAIIK 1628
                  L N QDGRSL+SL+HDSL AA+LL   +VF SK+EMQ LEML P    FP+IIK
Sbjct: 562  VGLDQQLLNSQDGRSLVSLSHDSLVAAYLLTGTDVFLSKYEMQHLEMLCPSHMPFPSIIK 621

Query: 1627 APLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPGVSFSSRNFISGLFSRM 1448
             P    P WTG+QLF M+LP  ++FS  S  + + +G+++ SP +SF  ++  S +FS M
Sbjct: 622  YPNFGSPLWTGQQLFGMLLPPGIDFSVDSKKLHIIDGEVLSSPQMSFWLQSSTSSIFSTM 681

Query: 1447 FECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTRNKLIDEVSFALEEAKS 1268
            F+ YG +A ++L S QE+LCEYLTMRGLSVSL D+YL SD Y+R K+ +EV+F L+EA+ 
Sbjct: 682  FKSYGRRALDFLCSAQELLCEYLTMRGLSVSLSDLYLASDFYSRTKMTEEVNFGLDEAED 741

Query: 1267 SCHFNELMLEPEIGIIIKAHDETDDLSHTLNISNFARERRPISQASIAKFKDLFRDLQSV 1088
            +C   +L+L+P I  ++ + DE +D S++++  +F      I +ASIA FKD+F D+Q  
Sbjct: 742  ACRVKQLLLDPRIEFLLSSLDECEDSSYSVSHYHFLSNNLQIRKASIAAFKDVFSDIQRT 801

Query: 1087 VPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLSAKPLPFNIPLKLSCPEWNQHKA 908
            V +Y+S +NS+ +M+ +GSKGSL+K           LSA   PF IP +LSC  WN+ KA
Sbjct: 802  VYHYVSKDNSMLSMIQSGSKGSLSKLAQQSLCLGLQLSASTFPFRIPQQLSCSWWNKQKA 861

Query: 907  FDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCRSNMFSENAELPGTLTR 728
             +   G QD     E  N YAVI +SFL GL+PLECF+HA+S R+N F ENAE+PGTLTR
Sbjct: 862  LE--CGDQDAIRCEERRNFYAVIRSSFLQGLNPLECFLHAISGRANFFGENAEIPGTLTR 919

Query: 727  KIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDCDHSHFSIGEDSACDRLG-- 554
            K+ FY+RD+ VAYDGTVR+AYGQQ+VQFSY   ++   ED  HS   I  D   ++    
Sbjct: 920  KLSFYLRDLYVAYDGTVRSAYGQQIVQFSYDISDEIFHEDA-HSRI-ISNDHIVEKYNGL 977

Query: 553  GHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRTSVNRTASLALSNKL 374
            G PVGS AA SISEAAYG L+HPVNSLE SPL+ LK++LEC   RT  +    L LS  L
Sbjct: 978  GAPVGSWAASSISEAAYGGLEHPVNSLEDSPLMKLKEILECGKRRTYGDHAGILVLSKGL 1037

Query: 373  KRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVLHFHVNKEM 194
            +R  YGFEYGAL VKNHL+   FS++V +VMI Y        +  ++SPW  HFH++KE 
Sbjct: 1038 QRYRYGFEYGALEVKNHLEITLFSEMVNTVMILYEC----PLQRRKISPWSTHFHISKET 1093

Query: 193  ILRKRINVQSIVDALAGNYNCFRE 122
            + +KR+ VQ ++D L  NY+  RE
Sbjct: 1094 LKKKRLQVQRVIDKLMENYSLMRE 1117


>gb|ONM02907.1| DNA-directed RNA polymerase IV subunit 1 [Zea mays]
          Length = 836

 Score =  709 bits (1830), Expect = 0.0
 Identities = 378/747 (50%), Positives = 502/747 (67%), Gaps = 4/747 (0%)
 Frame = -3

Query: 2350 SKYYSKQNDQPSST---GLKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPQDVSRTL 2180
            SK YSK+ D  +ST   G+KW+K+VVLSKRSDN FR IM+GDPKI+L EIG+P+D+S +L
Sbjct: 36   SKLYSKKADGETSTDTYGMKWLKDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPEDLSSSL 95

Query: 2179 YISEHVNAHNVEKLKSSCLLHLISKPELKARRKGKLIFIHSSDQLQVGDTLNRSLEDGDI 2000
             +SEHV+++N +     C LHL++K EL  RR GKL+F+  +DQL++GD   R L+DGDI
Sbjct: 96   VVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLRKADQLEIGDIAYRPLQDGDI 155

Query: 1999 IMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQSVRARVX 1820
            I++NR PSVH HSL+ALS KILP+ S VSINPLCC P  GDFDGDCLHG++PQS+R+RV 
Sbjct: 156  ILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSIRSRVE 215

Query: 1819 XXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEML-FPCKSQF 1643
                      L N+QDGR+L+SLTHDSL AAHLL   +VF  K E+QQL+ML     +  
Sbjct: 216  LEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQMLCLSVSTPA 275

Query: 1642 PAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPGVSFSSRNFISG 1463
            PA+IK+   Q   WTG+QLFSM+LP  M FS  + +  + +  L  S G S+   N  SG
Sbjct: 276  PAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELHIMDSEVLTCSLGSSWLQNN-TSG 334

Query: 1462 LFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTRNKLIDEVSFAL 1283
            LFS MF+ YG KA ++L S QEVLCE+LTMRGLSVSL D+Y+ SD Y+R KL + V  AL
Sbjct: 335  LFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLAEGVKLAL 394

Query: 1282 EEAKSSCHFNELMLEPEIGIIIKAHDETDDLSHTLNISNFARERRPISQASIAKFKDLFR 1103
             EA+ +    +++L+P    ++K HDET+D+  T   S+  +    + ++SI  FKD+FR
Sbjct: 395  YEAEEAFRVKKILLDPINIPVLKCHDETEDV--TYRQSDCIQSNPSVIRSSIMAFKDVFR 452

Query: 1102 DLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLSAKPLPFNIPLKLSCPEW 923
            DL  +V  ++S++NS+  M+ AGSKGS+ K           L A   PF IP +LSC  W
Sbjct: 453  DLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASKFPFRIPSQLSCISW 512

Query: 922  NQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCRSNMFSENAELP 743
            N  K+ +     + TS    G+N YAVI+ SF++GL+PLEC +HA+S R+N FSENA++P
Sbjct: 513  NGQKSLNYE--AESTSERVGGQNLYAVIKNSFIEGLNPLECLLHAISGRANFFSENADVP 570

Query: 742  GTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDCDHSHFSIGEDSACD 563
            GTLTRK+M+++RDI VAYDGTVR++YGQQ+VQFSY S                  D   D
Sbjct: 571  GTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSYDS-----------------VDDLVD 613

Query: 562  RLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRTSVNRTASLALS 383
            +LG  PVG  AACSISEAAYGAL+HPVN LE SPL+NL++V +C     S +    L LS
Sbjct: 614  KLGA-PVGCRAACSISEAAYGALEHPVNGLEDSPLMNLQEVFKCHKATNSGDHIGLLFLS 672

Query: 382  NKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVLHFHVN 203
              LK+  YG EY +L VKNHL+RV FSD+V ++MI Y  HD    +GM    W  HFH+N
Sbjct: 673  RHLKKYRYGLEYASLEVKNHLERVNFSDLVETIMIIYDGHDKIRNEGM----WTTHFHIN 728

Query: 202  KEMILRKRINVQSIVDALAGNYNCFRE 122
            K M+ +KR+ ++ +VD LA  Y+  R+
Sbjct: 729  KAMMKKKRLGLRFVVDELAKEYDTTRD 755


>gb|ONM02908.1| DNA-directed RNA polymerase IV subunit 1 [Zea mays]
          Length = 951

 Score =  709 bits (1830), Expect = 0.0
 Identities = 378/747 (50%), Positives = 502/747 (67%), Gaps = 4/747 (0%)
 Frame = -3

Query: 2350 SKYYSKQNDQPSST---GLKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPQDVSRTL 2180
            SK YSK+ D  +ST   G+KW+K+VVLSKRSDN FR IM+GDPKI+L EIG+P+D+S +L
Sbjct: 151  SKLYSKKADGETSTDTYGMKWLKDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPEDLSSSL 210

Query: 2179 YISEHVNAHNVEKLKSSCLLHLISKPELKARRKGKLIFIHSSDQLQVGDTLNRSLEDGDI 2000
             +SEHV+++N +     C LHL++K EL  RR GKL+F+  +DQL++GD   R L+DGDI
Sbjct: 211  VVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLRKADQLEIGDIAYRPLQDGDI 270

Query: 1999 IMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQSVRARVX 1820
            I++NR PSVH HSL+ALS KILP+ S VSINPLCC P  GDFDGDCLHG++PQS+R+RV 
Sbjct: 271  ILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSIRSRVE 330

Query: 1819 XXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEML-FPCKSQF 1643
                      L N+QDGR+L+SLTHDSL AAHLL   +VF  K E+QQL+ML     +  
Sbjct: 331  LEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQMLCLSVSTPA 390

Query: 1642 PAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPGVSFSSRNFISG 1463
            PA+IK+   Q   WTG+QLFSM+LP  M FS  + +  + +  L  S G S+   N  SG
Sbjct: 391  PAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELHIMDSEVLTCSLGSSWLQNN-TSG 449

Query: 1462 LFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTRNKLIDEVSFAL 1283
            LFS MF+ YG KA ++L S QEVLCE+LTMRGLSVSL D+Y+ SD Y+R KL + V  AL
Sbjct: 450  LFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLAEGVKLAL 509

Query: 1282 EEAKSSCHFNELMLEPEIGIIIKAHDETDDLSHTLNISNFARERRPISQASIAKFKDLFR 1103
             EA+ +    +++L+P    ++K HDET+D+  T   S+  +    + ++SI  FKD+FR
Sbjct: 510  YEAEEAFRVKKILLDPINIPVLKCHDETEDV--TYRQSDCIQSNPSVIRSSIMAFKDVFR 567

Query: 1102 DLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLSAKPLPFNIPLKLSCPEW 923
            DL  +V  ++S++NS+  M+ AGSKGS+ K           L A   PF IP +LSC  W
Sbjct: 568  DLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASKFPFRIPSQLSCISW 627

Query: 922  NQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCRSNMFSENAELP 743
            N  K+ +     + TS    G+N YAVI+ SF++GL+PLEC +HA+S R+N FSENA++P
Sbjct: 628  NGQKSLNYE--AESTSERVGGQNLYAVIKNSFIEGLNPLECLLHAISGRANFFSENADVP 685

Query: 742  GTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDCDHSHFSIGEDSACD 563
            GTLTRK+M+++RDI VAYDGTVR++YGQQ+VQFSY S                  D   D
Sbjct: 686  GTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSYDS-----------------VDDLVD 728

Query: 562  RLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRTSVNRTASLALS 383
            +LG  PVG  AACSISEAAYGAL+HPVN LE SPL+NL++V +C     S +    L LS
Sbjct: 729  KLGA-PVGCRAACSISEAAYGALEHPVNGLEDSPLMNLQEVFKCHKATNSGDHIGLLFLS 787

Query: 382  NKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVLHFHVN 203
              LK+  YG EY +L VKNHL+RV FSD+V ++MI Y  HD    +GM    W  HFH+N
Sbjct: 788  RHLKKYRYGLEYASLEVKNHLERVNFSDLVETIMIIYDGHDKIRNEGM----WTTHFHIN 843

Query: 202  KEMILRKRINVQSIVDALAGNYNCFRE 122
            K M+ +KR+ ++ +VD LA  Y+  R+
Sbjct: 844  KAMMKKKRLGLRFVVDELAKEYDTTRD 870


>gb|ONM02906.1| DNA-directed RNA polymerase IV subunit 1, partial [Zea mays]
          Length = 1088

 Score =  709 bits (1830), Expect = 0.0
 Identities = 378/747 (50%), Positives = 502/747 (67%), Gaps = 4/747 (0%)
 Frame = -3

Query: 2350 SKYYSKQNDQPSST---GLKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPQDVSRTL 2180
            SK YSK+ D  +ST   G+KW+K+VVLSKRSDN FR IM+GDPKI+L EIG+P+D+S +L
Sbjct: 306  SKLYSKKADGETSTDTYGMKWLKDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPEDLSSSL 365

Query: 2179 YISEHVNAHNVEKLKSSCLLHLISKPELKARRKGKLIFIHSSDQLQVGDTLNRSLEDGDI 2000
             +SEHV+++N +     C LHL++K EL  RR GKL+F+  +DQL++GD   R L+DGDI
Sbjct: 366  VVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLRKADQLEIGDIAYRPLQDGDI 425

Query: 1999 IMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQSVRARVX 1820
            I++NR PSVH HSL+ALS KILP+ S VSINPLCC P  GDFDGDCLHG++PQS+R+RV 
Sbjct: 426  ILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSIRSRVE 485

Query: 1819 XXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEML-FPCKSQF 1643
                      L N+QDGR+L+SLTHDSL AAHLL   +VF  K E+QQL+ML     +  
Sbjct: 486  LEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQMLCLSVSTPA 545

Query: 1642 PAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPGVSFSSRNFISG 1463
            PA+IK+   Q   WTG+QLFSM+LP  M FS  + +  + +  L  S G S+   N  SG
Sbjct: 546  PAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELHIMDSEVLTCSLGSSWLQNN-TSG 604

Query: 1462 LFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTRNKLIDEVSFAL 1283
            LFS MF+ YG KA ++L S QEVLCE+LTMRGLSVSL D+Y+ SD Y+R KL + V  AL
Sbjct: 605  LFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLAEGVKLAL 664

Query: 1282 EEAKSSCHFNELMLEPEIGIIIKAHDETDDLSHTLNISNFARERRPISQASIAKFKDLFR 1103
             EA+ +    +++L+P    ++K HDET+D+  T   S+  +    + ++SI  FKD+FR
Sbjct: 665  YEAEEAFRVKKILLDPINIPVLKCHDETEDV--TYRQSDCIQSNPSVIRSSIMAFKDVFR 722

Query: 1102 DLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLSAKPLPFNIPLKLSCPEW 923
            DL  +V  ++S++NS+  M+ AGSKGS+ K           L A   PF IP +LSC  W
Sbjct: 723  DLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASKFPFRIPSQLSCISW 782

Query: 922  NQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCRSNMFSENAELP 743
            N  K+ +     + TS    G+N YAVI+ SF++GL+PLEC +HA+S R+N FSENA++P
Sbjct: 783  NGQKSLNYE--AESTSERVGGQNLYAVIKNSFIEGLNPLECLLHAISGRANFFSENADVP 840

Query: 742  GTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDCDHSHFSIGEDSACD 563
            GTLTRK+M+++RDI VAYDGTVR++YGQQ+VQFSY S                  D   D
Sbjct: 841  GTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSYDS-----------------VDDLVD 883

Query: 562  RLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRTSVNRTASLALS 383
            +LG  PVG  AACSISEAAYGAL+HPVN LE SPL+NL++V +C     S +    L LS
Sbjct: 884  KLGA-PVGCRAACSISEAAYGALEHPVNGLEDSPLMNLQEVFKCHKATNSGDHIGLLFLS 942

Query: 382  NKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVLHFHVN 203
              LK+  YG EY +L VKNHL+RV FSD+V ++MI Y  HD    +GM    W  HFH+N
Sbjct: 943  RHLKKYRYGLEYASLEVKNHLERVNFSDLVETIMIIYDGHDKIRNEGM----WTTHFHIN 998

Query: 202  KEMILRKRINVQSIVDALAGNYNCFRE 122
            K M+ +KR+ ++ +VD LA  Y+  R+
Sbjct: 999  KAMMKKKRLGLRFVVDELAKEYDTTRD 1025


>ref|XP_020394617.1| DNA dependent RNA polymerase D largest subunit isoform X3 [Zea mays]
 ref|XP_020394619.1| DNA dependent RNA polymerase D largest subunit isoform X3 [Zea mays]
          Length = 1174

 Score =  709 bits (1830), Expect = 0.0
 Identities = 378/747 (50%), Positives = 502/747 (67%), Gaps = 4/747 (0%)
 Frame = -3

Query: 2350 SKYYSKQNDQPSST---GLKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPQDVSRTL 2180
            SK YSK+ D  +ST   G+KW+K+VVLSKRSDN FR IM+GDPKI+L EIG+P+D+S +L
Sbjct: 36   SKLYSKKADGETSTDTYGMKWLKDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPEDLSSSL 95

Query: 2179 YISEHVNAHNVEKLKSSCLLHLISKPELKARRKGKLIFIHSSDQLQVGDTLNRSLEDGDI 2000
             +SEHV+++N +     C LHL++K EL  RR GKL+F+  +DQL++GD   R L+DGDI
Sbjct: 96   VVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLRKADQLEIGDIAYRPLQDGDI 155

Query: 1999 IMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQSVRARVX 1820
            I++NR PSVH HSL+ALS KILP+ S VSINPLCC P  GDFDGDCLHG++PQS+R+RV 
Sbjct: 156  ILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSIRSRVE 215

Query: 1819 XXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEML-FPCKSQF 1643
                      L N+QDGR+L+SLTHDSL AAHLL   +VF  K E+QQL+ML     +  
Sbjct: 216  LEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQMLCLSVSTPA 275

Query: 1642 PAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPGVSFSSRNFISG 1463
            PA+IK+   Q   WTG+QLFSM+LP  M FS  + +  + +  L  S G S+   N  SG
Sbjct: 276  PAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELHIMDSEVLTCSLGSSWLQNN-TSG 334

Query: 1462 LFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTRNKLIDEVSFAL 1283
            LFS MF+ YG KA ++L S QEVLCE+LTMRGLSVSL D+Y+ SD Y+R KL + V  AL
Sbjct: 335  LFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLAEGVKLAL 394

Query: 1282 EEAKSSCHFNELMLEPEIGIIIKAHDETDDLSHTLNISNFARERRPISQASIAKFKDLFR 1103
             EA+ +    +++L+P    ++K HDET+D+  T   S+  +    + ++SI  FKD+FR
Sbjct: 395  YEAEEAFRVKKILLDPINIPVLKCHDETEDV--TYRQSDCIQSNPSVIRSSIMAFKDVFR 452

Query: 1102 DLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLSAKPLPFNIPLKLSCPEW 923
            DL  +V  ++S++NS+  M+ AGSKGS+ K           L A   PF IP +LSC  W
Sbjct: 453  DLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASKFPFRIPSQLSCISW 512

Query: 922  NQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCRSNMFSENAELP 743
            N  K+ +     + TS    G+N YAVI+ SF++GL+PLEC +HA+S R+N FSENA++P
Sbjct: 513  NGQKSLNYE--AESTSERVGGQNLYAVIKNSFIEGLNPLECLLHAISGRANFFSENADVP 570

Query: 742  GTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDCDHSHFSIGEDSACD 563
            GTLTRK+M+++RDI VAYDGTVR++YGQQ+VQFSY S                  D   D
Sbjct: 571  GTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSYDS-----------------VDDLVD 613

Query: 562  RLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRTSVNRTASLALS 383
            +LG  PVG  AACSISEAAYGAL+HPVN LE SPL+NL++V +C     S +    L LS
Sbjct: 614  KLGA-PVGCRAACSISEAAYGALEHPVNGLEDSPLMNLQEVFKCHKATNSGDHIGLLFLS 672

Query: 382  NKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVLHFHVN 203
              LK+  YG EY +L VKNHL+RV FSD+V ++MI Y  HD    +GM    W  HFH+N
Sbjct: 673  RHLKKYRYGLEYASLEVKNHLERVNFSDLVETIMIIYDGHDKIRNEGM----WTTHFHIN 728

Query: 202  KEMILRKRINVQSIVDALAGNYNCFRE 122
            K M+ +KR+ ++ +VD LA  Y+  R+
Sbjct: 729  KAMMKKKRLGLRFVVDELAKEYDTTRD 755


>ref|XP_004970758.1| DNA-directed RNA polymerase IV subunit 1 isoform X5 [Setaria italica]
          Length = 1181

 Score =  704 bits (1817), Expect = 0.0
 Identities = 373/749 (49%), Positives = 507/749 (67%), Gaps = 7/749 (0%)
 Frame = -3

Query: 2350 SKYYSKQNDQPSST---GLKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPQDVSRTL 2180
            SK YSK+ D  +ST   G+KW+K+ VLSKRSDN FR IM+GDPKI+L EIG+P++++  L
Sbjct: 36   SKLYSKKTDVETSTDTYGMKWLKDAVLSKRSDNAFRSIMVGDPKIRLWEIGIPENLASNL 95

Query: 2179 YISEHVNAHNVEKLKSSCLLHLISKPELKARRKGKLIFIHSSDQLQVGDTLNRSLEDGDI 2000
             +SEHV+++N+E +   C LHL++K EL  RR GKL+FI  ++QL+VGD   R L+DGD+
Sbjct: 96   VVSEHVSSYNLENINLKCNLHLLAKEELLIRRNGKLMFIRKANQLEVGDIAYRPLQDGDL 155

Query: 1999 IMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQSVRARVX 1820
            I++NR PSVH HSL+ALS KILP++S VSINPLCC P LGDFDGDCLHG++PQS+R+R+ 
Sbjct: 156  ILINRPPSVHQHSLIALSTKILPIQSVVSINPLCCMPFLGDFDGDCLHGYIPQSIRSRIE 215

Query: 1819 XXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEMLFPCKS--- 1649
                      L N+QDGRSL+SLTHDSL AAHLL   +VF  + E+QQL+ML  C S   
Sbjct: 216  LGELVSLHQQLLNMQDGRSLVSLTHDSLAAAHLLTSTDVFLKESELQQLQML--CLSVST 273

Query: 1648 -QFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPGVSFSSRNF 1472
               PAIIK+   +   WTG+Q FSM+LP  M FS  S +  + +  L  S G S+  +N 
Sbjct: 274  TPVPAIIKSMNFEGSLWTGKQFFSMLLPSGMNFSCDSKLHIIDSEVLTCSSGSSW-LQNS 332

Query: 1471 ISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTRNKLIDEVS 1292
             +GLFS MF+ YG KA ++L S QEVLCE+LTMRGLSVSL D+Y+ SD Y+R KL   V 
Sbjct: 333  TTGLFSIMFKQYGRKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLTQGVK 392

Query: 1291 FALEEAKSSCHFNELMLEPEIGIIIKAHDETDDLSHTLNISNFARERRPISQASIAKFKD 1112
             AL+EA+ +    +++L+P    ++K HDET+D+  T   S++ +    + ++SI  FKD
Sbjct: 393  LALDEAEEAFRIKQILLDPINIPVLKCHDETEDV--TYRQSDYIQSNLSVVRSSIMSFKD 450

Query: 1111 LFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLSAKPLPFNIPLKLSC 932
            +F DL  +V +++S++NS+  M+ AGSKGS+ K           L A   PF IP +LSC
Sbjct: 451  VFNDLLKMVQHHVSNDNSMMVMINAGSKGSMLKYVQQTACVGLQLPASKFPFRIPSQLSC 510

Query: 931  PEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCRSNMFSENA 752
              WN+ K+   +   + TS   EG+N YAVI  SF++GL+PLEC +HA+S R+N FSE+A
Sbjct: 511  VSWNRQKSL--NCEAESTSEHVEGQNLYAVIRNSFIEGLNPLECLLHAISGRANFFSEHA 568

Query: 751  ELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDCDHSHFSIGEDS 572
            ++PGTLTRK+M+++RD+ VAYDGTVR++YGQ ++QFSY + +   C     +H  +GE  
Sbjct: 569  DVPGTLTRKLMYHLRDLHVAYDGTVRSSYGQHIMQFSYDTADDMCC-----NHDLVGE-- 621

Query: 571  ACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRTSVNRTASL 392
                  G PVGS AACSISEAAYGALDHPVN LE SPL+NL++V +C     S +    L
Sbjct: 622  -----LGAPVGSWAACSISEAAYGALDHPVNGLEDSPLMNLQEVFKCHKATNSGDHVGLL 676

Query: 391  ALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVLHF 212
             LS  LK+  Y  EY +L VKNHL+RV FSD+V ++MI Y   D K  KG    PW  HF
Sbjct: 677  FLSKHLKKYRYSLEYASLEVKNHLERVNFSDLVETIMIIYDGCD-KTRKG---GPWTTHF 732

Query: 211  HVNKEMILRKRINVQSIVDALAGNYNCFR 125
            H++KEM+ +KR+ +  +V+ L   Y+  R
Sbjct: 733  HISKEMMKKKRLGLGFVVEELTKEYDATR 761


>gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-8 [Zea
            mays]
          Length = 1444

 Score =  709 bits (1830), Expect = 0.0
 Identities = 378/747 (50%), Positives = 502/747 (67%), Gaps = 4/747 (0%)
 Frame = -3

Query: 2350 SKYYSKQNDQPSST---GLKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPQDVSRTL 2180
            SK YSK+ D  +ST   G+KW+K+VVLSKRSDN FR IM+GDPKI+L EIG+P+D+S +L
Sbjct: 306  SKLYSKKADGETSTDTYGMKWLKDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPEDLSSSL 365

Query: 2179 YISEHVNAHNVEKLKSSCLLHLISKPELKARRKGKLIFIHSSDQLQVGDTLNRSLEDGDI 2000
             +SEHV+++N +     C LHL++K EL  RR GKL+F+  +DQL++GD   R L+DGDI
Sbjct: 366  VVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLRKADQLEIGDIAYRPLQDGDI 425

Query: 1999 IMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQSVRARVX 1820
            I++NR PSVH HSL+ALS KILP+ S VSINPLCC P  GDFDGDCLHG++PQS+R+RV 
Sbjct: 426  ILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSIRSRVE 485

Query: 1819 XXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEML-FPCKSQF 1643
                      L N+QDGR+L+SLTHDSL AAHLL   +VF  K E+QQL+ML     +  
Sbjct: 486  LEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQMLCLSVSTPA 545

Query: 1642 PAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPGVSFSSRNFISG 1463
            PA+IK+   Q   WTG+QLFSM+LP  M FS  + +  + +  L  S G S+   N  SG
Sbjct: 546  PAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELHIMDSEVLTCSLGSSWLQNN-TSG 604

Query: 1462 LFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTRNKLIDEVSFAL 1283
            LFS MF+ YG KA ++L S QEVLCE+LTMRGLSVSL D+Y+ SD Y+R KL + V  AL
Sbjct: 605  LFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLAEGVKLAL 664

Query: 1282 EEAKSSCHFNELMLEPEIGIIIKAHDETDDLSHTLNISNFARERRPISQASIAKFKDLFR 1103
             EA+ +    +++L+P    ++K HDET+D+  T   S+  +    + ++SI  FKD+FR
Sbjct: 665  YEAEEAFRVKKILLDPINIPVLKCHDETEDV--TYRQSDCIQSNPSVIRSSIMAFKDVFR 722

Query: 1102 DLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLSAKPLPFNIPLKLSCPEW 923
            DL  +V  ++S++NS+  M+ AGSKGS+ K           L A   PF IP +LSC  W
Sbjct: 723  DLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASKFPFRIPSQLSCISW 782

Query: 922  NQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCRSNMFSENAELP 743
            N  K+ +     + TS    G+N YAVI+ SF++GL+PLEC +HA+S R+N FSENA++P
Sbjct: 783  NGQKSLNYE--AESTSERVGGQNLYAVIKNSFIEGLNPLECLLHAISGRANFFSENADVP 840

Query: 742  GTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDCDHSHFSIGEDSACD 563
            GTLTRK+M+++RDI VAYDGTVR++YGQQ+VQFSY S                  D   D
Sbjct: 841  GTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSYDS-----------------VDDLVD 883

Query: 562  RLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRTSVNRTASLALS 383
            +LG  PVG  AACSISEAAYGAL+HPVN LE SPL+NL++V +C     S +    L LS
Sbjct: 884  KLGA-PVGCRAACSISEAAYGALEHPVNGLEDSPLMNLQEVFKCHKATNSGDHIGLLFLS 942

Query: 382  NKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVLHFHVN 203
              LK+  YG EY +L VKNHL+RV FSD+V ++MI Y  HD    +GM    W  HFH+N
Sbjct: 943  RHLKKYRYGLEYASLEVKNHLERVNFSDLVETIMIIYDGHDKIRNEGM----WTTHFHIN 998

Query: 202  KEMILRKRINVQSIVDALAGNYNCFRE 122
            K M+ +KR+ ++ +VD LA  Y+  R+
Sbjct: 999  KAMMKKKRLGLRFVVDELAKEYDTTRD 1025


>ref|NP_001182824.1| DNA dependent RNA polymerase D largest subunit [Zea mays]
 ref|XP_020394614.1| DNA dependent RNA polymerase D largest subunit isoform X1 [Zea mays]
 gb|ACL30979.1| DNA dependent RNA polymerase D largest subunit [Zea mays]
          Length = 1444

 Score =  709 bits (1830), Expect = 0.0
 Identities = 378/747 (50%), Positives = 502/747 (67%), Gaps = 4/747 (0%)
 Frame = -3

Query: 2350 SKYYSKQNDQPSST---GLKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPQDVSRTL 2180
            SK YSK+ D  +ST   G+KW+K+VVLSKRSDN FR IM+GDPKI+L EIG+P+D+S +L
Sbjct: 306  SKLYSKKADGETSTDTYGMKWLKDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPEDLSSSL 365

Query: 2179 YISEHVNAHNVEKLKSSCLLHLISKPELKARRKGKLIFIHSSDQLQVGDTLNRSLEDGDI 2000
             +SEHV+++N +     C LHL++K EL  RR GKL+F+  +DQL++GD   R L+DGDI
Sbjct: 366  VVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLRKADQLEIGDIAYRPLQDGDI 425

Query: 1999 IMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQSVRARVX 1820
            I++NR PSVH HSL+ALS KILP+ S VSINPLCC P  GDFDGDCLHG++PQS+R+RV 
Sbjct: 426  ILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSIRSRVE 485

Query: 1819 XXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEML-FPCKSQF 1643
                      L N+QDGR+L+SLTHDSL AAHLL   +VF  K E+QQL+ML     +  
Sbjct: 486  LEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQMLCLSVSTPA 545

Query: 1642 PAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPGVSFSSRNFISG 1463
            PA+IK+   Q   WTG+QLFSM+LP  M FS  + +  + +  L  S G S+   N  SG
Sbjct: 546  PAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELHIMDSEVLTCSLGSSWLQNN-TSG 604

Query: 1462 LFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTRNKLIDEVSFAL 1283
            LFS MF+ YG KA ++L S QEVLCE+LTMRGLSVSL D+Y+ SD Y+R KL + V  AL
Sbjct: 605  LFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLAEGVKLAL 664

Query: 1282 EEAKSSCHFNELMLEPEIGIIIKAHDETDDLSHTLNISNFARERRPISQASIAKFKDLFR 1103
             EA+ +    +++L+P    ++K HDET+D+  T   S+  +    + ++SI  FKD+FR
Sbjct: 665  YEAEEAFRVKKILLDPINIPVLKCHDETEDV--TYRQSDCIQSNPSVIRSSIMAFKDVFR 722

Query: 1102 DLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLSAKPLPFNIPLKLSCPEW 923
            DL  +V  ++S++NS+  M+ AGSKGS+ K           L A   PF IP +LSC  W
Sbjct: 723  DLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASKFPFRIPSQLSCISW 782

Query: 922  NQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCRSNMFSENAELP 743
            N  K+ +     + TS    G+N YAVI+ SF++GL+PLEC +HA+S R+N FSENA++P
Sbjct: 783  NGQKSLNYE--AESTSERVGGQNLYAVIKNSFIEGLNPLECLLHAISGRANFFSENADVP 840

Query: 742  GTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDCDHSHFSIGEDSACD 563
            GTLTRK+M+++RDI VAYDGTVR++YGQQ+VQFSY S                  D   D
Sbjct: 841  GTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSYDS-----------------VDDLVD 883

Query: 562  RLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRTSVNRTASLALS 383
            +LG  PVG  AACSISEAAYGAL+HPVN LE SPL+NL++V +C     S +    L LS
Sbjct: 884  KLGA-PVGCRAACSISEAAYGALEHPVNGLEDSPLMNLQEVFKCHKATNSGDHIGLLFLS 942

Query: 382  NKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVLHFHVN 203
              LK+  YG EY +L VKNHL+RV FSD+V ++MI Y  HD    +GM    W  HFH+N
Sbjct: 943  RHLKKYRYGLEYASLEVKNHLERVNFSDLVETIMIIYDGHDKIRNEGM----WTTHFHIN 998

Query: 202  KEMILRKRINVQSIVDALAGNYNCFRE 122
            K M+ +KR+ ++ +VD LA  Y+  R+
Sbjct: 999  KAMMKKKRLGLRFVVDELAKEYDTTRD 1025


>ref|XP_021318621.1| DNA-directed RNA polymerase IV subunit 1 isoform X3 [Sorghum bicolor]
          Length = 1171

 Score =  699 bits (1804), Expect = 0.0
 Identities = 369/750 (49%), Positives = 500/750 (66%), Gaps = 4/750 (0%)
 Frame = -3

Query: 2350 SKYYSKQNDQPSST---GLKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPQDVSRTL 2180
            SK YSK+ D  +ST   G+KW+K+ VLSKRSDN FR  M+GDPKI+L EIG+P+D++  L
Sbjct: 36   SKLYSKKTDGETSTDPSGMKWLKDAVLSKRSDNAFRSTMVGDPKIKLWEIGIPEDLASNL 95

Query: 2179 YISEHVNAHNVEKLKSSCLLHLISKPELKARRKGKLIFIHSSDQLQVGDTLNRSLEDGDI 2000
             +S+HVN++N E +   C LHL++K EL  RR GKL+F+  +DQL++GD   R L+DGD+
Sbjct: 96   VVSDHVNSYNFENINLKCNLHLLTKEELFIRRNGKLMFLRKADQLEIGDIAYRPLQDGDL 155

Query: 1999 IMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQSVRARVX 1820
            I++NR PSVH HSL+A S KILP+ S VSINPLCC P LGDFDGDCLHG++PQSVR+R+ 
Sbjct: 156  ILINRPPSVHQHSLIAFSAKILPIHSVVSINPLCCTPFLGDFDGDCLHGYIPQSVRSRIE 215

Query: 1819 XXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEML-FPCKSQF 1643
                      L N+QDGRSL+SLTHDSL AAHLL   +VF  K E QQL+ML     +  
Sbjct: 216  LGELVSLHHQLLNMQDGRSLVSLTHDSLAAAHLLTSTDVFLKKSEFQQLQMLCLSVLTPV 275

Query: 1642 PAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPGVSFSSRNFISG 1463
            PA+IK+   Q  RWTG+QLFSM+LP  M+FS    ++ + NG+++     S   +N  SG
Sbjct: 276  PAVIKSMNFQGSRWTGKQLFSMLLPSGMKFSC-DRMLHILNGEVLTCSLGSSWLQNNTSG 334

Query: 1462 LFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTRNKLIDEVSFAL 1283
            LFS MF+ YG KA ++L S QEVLCE+LTMRGLSVSL DM+  SD Y+R KL + V  AL
Sbjct: 335  LFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDMF--SDHYSRRKLTEGVKLAL 392

Query: 1282 EEAKSSCHFNELMLEPEIGIIIKAHDETDDLSHTLNISNFARERRPISQASIAKFKDLFR 1103
            +EA+ +    +++L+P    ++K  DET+D+  T   S+  +    + ++SI  FKD+F 
Sbjct: 393  DEAEEAFRIKQILLDPINIPVLKCQDETEDV--TYRQSDCIQNNPSVIRSSIMAFKDVFS 450

Query: 1102 DLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLSAKPLPFNIPLKLSCPEW 923
            DL  +V  ++S++NS+  M+ AGSKGS+ K           L A   PF +P +LSC  W
Sbjct: 451  DLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACVGLQLPASKFPFRVPSQLSCIRW 510

Query: 922  NQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCRSNMFSENAELP 743
            N+ K+ +     + T+    G+N YAVI  SF++GL+PLEC +HA+S R+N FSENA++P
Sbjct: 511  NRQKSLNYE--AEGTNERVGGQNLYAVIRNSFIEGLNPLECLLHAISGRANFFSENADVP 568

Query: 742  GTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDCDHSHFSIGEDSACD 563
            GTLTRK+M+++RDI VAYDGTVR++YGQQ+VQFSY S                  D   D
Sbjct: 569  GTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSYDS-----------------ADDPVD 611

Query: 562  RLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRTSVNRTASLALS 383
            +LG  PVG  AACSISEAAYGAL+HPVN LE SPL+NL++V +C     S +    L LS
Sbjct: 612  KLGA-PVGCWAACSISEAAYGALEHPVNGLEDSPLMNLQEVFKCHKATNSGDHIGLLFLS 670

Query: 382  NKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVLHFHVN 203
              LK+  YG EY +L VKNHL++V FSD+V ++MI Y  HD    +G     W  HFH++
Sbjct: 671  RHLKKYRYGLEYASLEVKNHLEQVNFSDLVETIMIIYDGHDKIRKEG----TWTTHFHIS 726

Query: 202  KEMILRKRINVQSIVDALAGNYNCFREGKK 113
            KEM+ +KR+ ++ +++ L   YN  R+  K
Sbjct: 727  KEMMKKKRLGLRFVIEELTKEYNATRDQLK 756


>ref|XP_010278508.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X7
            [Nelumbo nucifera]
          Length = 1373

 Score =  705 bits (1819), Expect = 0.0
 Identities = 373/758 (49%), Positives = 507/758 (66%), Gaps = 3/758 (0%)
 Frame = -3

Query: 2404 DCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIGDPKI 2225
            +CL+VSKLH++K+   D      K +   S  GLKWIKE++L KR+D  FRM +IGDPKI
Sbjct: 169  NCLSVSKLHTDKSLKKD--TVLGKNDSVSSMCGLKWIKEIMLGKRTDYAFRMTVIGDPKI 226

Query: 2224 QLGEIGLPQDVSRTLYISEHVNAHNVEKLKSSCLLHLISKPELKARRKGKLIFIHSSDQL 2045
             L EIG+P+ V+  L I E++N HN EKL +    HLI K     RRKGKL+ +  + +L
Sbjct: 227  SLCEIGVPRMVAENLQIPEYLNVHNWEKLINHLKFHLIEKGRFFIRRKGKLVQLCDTSEL 286

Query: 2044 QVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGD 1865
            ++GD + R L+DGDI+++NR PSVH HSL+ALSVK+LP+ S VSINPLCC+PL GDFDGD
Sbjct: 287  KLGDIVYRHLDDGDIVLINRPPSVHQHSLMALSVKVLPINSVVSINPLCCSPLSGDFDGD 346

Query: 1864 CLHGFVPQSVRARVXXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFE 1685
            CLHGF+ Q++  RV           L N Q+G++LLSL+HDSL+AAHL+ +  VF   F+
Sbjct: 347  CLHGFIAQAIDCRVELRELVALSKQLVNGQNGQNLLSLSHDSLSAAHLVTQNGVFLDMFQ 406

Query: 1684 MQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVP 1505
            MQQL+ML P + Q P I+KAPL++ P WTG+QLF M+LP + ++   SS V++ NG+L+ 
Sbjct: 407  MQQLKMLCPHQLQIPVILKAPLLEAPLWTGKQLFDMLLPQSFDYVFPSSGVKISNGELLC 466

Query: 1504 SPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDP 1325
            S G S   R+    +FS + + Y ++A ++LF+ Q+V CE+++M G SVSL D+Y+ SD 
Sbjct: 467  SFGESSWLRSRAGSIFSVLVDHYQNRAIDFLFAAQDVFCEWISMGGFSVSLSDIYIASDS 526

Query: 1324 YTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETDDLSHTLNISNFA---RE 1154
            ++R  ++DEV   L+E K   +  +LM++PE+  +++ +D  +  ++   +       +E
Sbjct: 527  HSRKNMLDEVRCGLQEIKKKIYIKQLMVDPEMVHLLR-YDGENTKTNGYRVDQECPSNQE 585

Query: 1153 RRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLS 974
               + Q S++ F++ F D+QS++  Y S++NSL  M+ AGSKG+L K            +
Sbjct: 586  SVVLCQVSVSSFREAFHDIQSLIHQYASNDNSLLAMLKAGSKGNLLKIVQQGLCLGLQHA 645

Query: 973  AKPLPFNIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFV 794
            + PL F IP KLSC  WN  K+        D    S     YAV+E SFLDGL+PLECFV
Sbjct: 646  SVPLSFQIPCKLSCASWNYQKS-------HDIPACSISNIPYAVVENSFLDGLNPLECFV 698

Query: 793  HALSCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSC 614
            H++S R N F ENA+LPGTLTRK+MFYMRD+ +AYDGTVR AYG QLVQFSYG  +  S 
Sbjct: 699  HSVSTRDNSFGENADLPGTLTRKLMFYMRDLYIAYDGTVRTAYGNQLVQFSYGCFKGDSV 758

Query: 613  EDCDHSHFSIGEDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLE 434
            +  D      G  +A D +GG PVGSL+ACSISEAAY ALD P++ LE SPLLNLKKVLE
Sbjct: 759  Q--DPCGLFGGSPNAYDGVGGQPVGSLSACSISEAAYSALDQPISKLEISPLLNLKKVLE 816

Query: 433  CAPTRTSVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAK 254
            C     S ++TASL LS KL R   GFEYGA  VKNHL+RVFFSD+V++VM+ +S    +
Sbjct: 817  CGQKNASADQTASLFLSKKLGRWICGFEYGATEVKNHLERVFFSDVVSTVMVIFS---PQ 873

Query: 253  GTKGMRLSPWVLHFHVNKEMILRKRINVQSIVDALAGN 140
                M  SPWV HFHV KEM+ R+ +N+QSI+DAL  N
Sbjct: 874  RHSQMSASPWVCHFHVCKEMMERRGLNIQSIIDALQRN 911


>ref|XP_019055894.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X6
            [Nelumbo nucifera]
          Length = 1374

 Score =  705 bits (1819), Expect = 0.0
 Identities = 373/758 (49%), Positives = 507/758 (66%), Gaps = 3/758 (0%)
 Frame = -3

Query: 2404 DCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIGDPKI 2225
            +CL+VSKLH++K+   D      K +   S  GLKWIKE++L KR+D  FRM +IGDPKI
Sbjct: 170  NCLSVSKLHTDKSLKKD--TVLGKNDSVSSMCGLKWIKEIMLGKRTDYAFRMTVIGDPKI 227

Query: 2224 QLGEIGLPQDVSRTLYISEHVNAHNVEKLKSSCLLHLISKPELKARRKGKLIFIHSSDQL 2045
             L EIG+P+ V+  L I E++N HN EKL +    HLI K     RRKGKL+ +  + +L
Sbjct: 228  SLCEIGVPRMVAENLQIPEYLNVHNWEKLINHLKFHLIEKGRFFIRRKGKLVQLCDTSEL 287

Query: 2044 QVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGD 1865
            ++GD + R L+DGDI+++NR PSVH HSL+ALSVK+LP+ S VSINPLCC+PL GDFDGD
Sbjct: 288  KLGDIVYRHLDDGDIVLINRPPSVHQHSLMALSVKVLPINSVVSINPLCCSPLSGDFDGD 347

Query: 1864 CLHGFVPQSVRARVXXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFE 1685
            CLHGF+ Q++  RV           L N Q+G++LLSL+HDSL+AAHL+ +  VF   F+
Sbjct: 348  CLHGFIAQAIDCRVELRELVALSKQLVNGQNGQNLLSLSHDSLSAAHLVTQNGVFLDMFQ 407

Query: 1684 MQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVP 1505
            MQQL+ML P + Q P I+KAPL++ P WTG+QLF M+LP + ++   SS V++ NG+L+ 
Sbjct: 408  MQQLKMLCPHQLQIPVILKAPLLEAPLWTGKQLFDMLLPQSFDYVFPSSGVKISNGELLC 467

Query: 1504 SPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDP 1325
            S G S   R+    +FS + + Y ++A ++LF+ Q+V CE+++M G SVSL D+Y+ SD 
Sbjct: 468  SFGESSWLRSRAGSIFSVLVDHYQNRAIDFLFAAQDVFCEWISMGGFSVSLSDIYIASDS 527

Query: 1324 YTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETDDLSHTLNISNFA---RE 1154
            ++R  ++DEV   L+E K   +  +LM++PE+  +++ +D  +  ++   +       +E
Sbjct: 528  HSRKNMLDEVRCGLQEIKKKIYIKQLMVDPEMVHLLR-YDGENTKTNGYRVDQECPSNQE 586

Query: 1153 RRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLS 974
               + Q S++ F++ F D+QS++  Y S++NSL  M+ AGSKG+L K            +
Sbjct: 587  SVVLCQVSVSSFREAFHDIQSLIHQYASNDNSLLAMLKAGSKGNLLKIVQQGLCLGLQHA 646

Query: 973  AKPLPFNIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFV 794
            + PL F IP KLSC  WN  K+        D    S     YAV+E SFLDGL+PLECFV
Sbjct: 647  SVPLSFQIPCKLSCASWNYQKS-------HDIPACSISNIPYAVVENSFLDGLNPLECFV 699

Query: 793  HALSCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSC 614
            H++S R N F ENA+LPGTLTRK+MFYMRD+ +AYDGTVR AYG QLVQFSYG  +  S 
Sbjct: 700  HSVSTRDNSFGENADLPGTLTRKLMFYMRDLYIAYDGTVRTAYGNQLVQFSYGCFKGDSV 759

Query: 613  EDCDHSHFSIGEDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLE 434
            +  D      G  +A D +GG PVGSL+ACSISEAAY ALD P++ LE SPLLNLKKVLE
Sbjct: 760  Q--DPCGLFGGSPNAYDGVGGQPVGSLSACSISEAAYSALDQPISKLEISPLLNLKKVLE 817

Query: 433  CAPTRTSVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAK 254
            C     S ++TASL LS KL R   GFEYGA  VKNHL+RVFFSD+V++VM+ +S    +
Sbjct: 818  CGQKNASADQTASLFLSKKLGRWICGFEYGATEVKNHLERVFFSDVVSTVMVIFS---PQ 874

Query: 253  GTKGMRLSPWVLHFHVNKEMILRKRINVQSIVDALAGN 140
                M  SPWV HFHV KEM+ R+ +N+QSI+DAL  N
Sbjct: 875  RHSQMSASPWVCHFHVCKEMMERRGLNIQSIIDALQRN 912