BLASTX nr result
ID: Ophiopogon23_contig00014184
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon23_contig00014184
(979 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABD93802.1| RNA polymerase beta chain, partial (chloroplast) ... 497 e-168
gb|AEX94829.1| RNA polymerase beta' subunit (chloroplast) [Beauc... 505 e-165
gb|AEX94833.1| RNA polymerase beta' subunit (chloroplast) [Ophio... 503 e-164
ref|YP_009335323.1| RNA polymerase beta subunit (chloroplast) [N... 503 e-164
gb|AEX94836.1| RNA polymerase beta' subunit (chloroplast) [Maian... 503 e-164
ref|YP_009431208.1| RNA polymerase beta' subunit (chloroplast) [... 501 e-164
ref|YP_009432293.1| RNA polymerase beta' subunit (chloroplast) [... 499 e-163
gb|AEX94832.1| RNA polymerase beta' subunit (chloroplast) [Lirio... 499 e-163
gb|AEX94830.1| RNA polymerase beta' subunit (chloroplast) [Dasyl... 499 e-163
gb|AEX94834.1| RNA polymerase beta' subunit (chloroplast) [Ruscu... 499 e-163
ref|YP_009183189.1| RNA polymerase beta' subunit (chloroplast) [... 494 e-161
gb|AEX94835.1| RNA polymerase beta' subunit (chloroplast) [Sanse... 488 e-158
gb|ABD93797.1| RNA polymerase beta chain, partial (chloroplast) ... 471 e-157
ref|YP_009370011.1| RNA polymerase beta' subunit (chloroplast) [... 484 e-157
gb|AEX94815.1| RNA polymerase beta' subunit (chloroplast) [Aspar... 484 e-157
gb|ABD93778.1| RNA polymerase beta chain, partial (chloroplast) ... 469 e-157
ref|YP_009431122.1| RNA polymerase beta' subunit (chloroplast) [... 483 e-156
ref|YP_009432547.1| RNA polymerase beta' subunit (chloroplast) [... 480 e-156
gb|AEX94827.1| RNA polymerase beta' subunit (chloroplast) [Cordy... 480 e-156
gb|AEX94813.1| RNA polymerase beta' subunit (chloroplast) [Scado... 479 e-155
>gb|ABD93802.1| RNA polymerase beta chain, partial (chloroplast) [Beaucarnea
recurvata]
Length = 830
Score = 497 bits (1280), Expect = e-168
Identities = 251/261 (96%), Positives = 254/261 (97%)
Frame = -3
Query: 785 STVYSVFSHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRL 606
S++ S HKDQ Q+NVHSFSV ERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRL
Sbjct: 12 SSIVSFSLHKDQIQVNVHSFSVGERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRL 71
Query: 605 DRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING 426
DRIISNGHWNFIYP ILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING
Sbjct: 72 DRIISNGHWNFIYPSILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING 131
Query: 425 ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF 246
ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF
Sbjct: 132 ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF 191
Query: 245 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG 66
FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG
Sbjct: 192 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG 251
Query: 65 DIHFPGETDKISRHSGILIPP 3
DIHFPGETDKISRHSGILIPP
Sbjct: 252 DIHFPGETDKISRHSGILIPP 272
>gb|AEX94829.1| RNA polymerase beta' subunit (chloroplast) [Beaucarnea hookeri]
Length = 1385
Score = 505 bits (1300), Expect = e-165
Identities = 254/261 (97%), Positives = 256/261 (98%)
Frame = -3
Query: 785 STVYSVFSHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRL 606
S++ S HKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRL
Sbjct: 487 SSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRL 546
Query: 605 DRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING 426
DRIISNGHWNFIYP ILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING
Sbjct: 547 DRIISNGHWNFIYPSILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING 606
Query: 425 ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF 246
ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF
Sbjct: 607 ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF 666
Query: 245 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG 66
FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG
Sbjct: 667 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG 726
Query: 65 DIHFPGETDKISRHSGILIPP 3
DIHFPGETDKISRHSGILIPP
Sbjct: 727 DIHFPGETDKISRHSGILIPP 747
>gb|AEX94833.1| RNA polymerase beta' subunit (chloroplast) [Ophiopogon japonicus]
Length = 1381
Score = 503 bits (1294), Expect = e-164
Identities = 252/253 (99%), Positives = 252/253 (99%)
Frame = -3
Query: 761 HKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRLDRIISNGH 582
HKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRLDRIISNGH
Sbjct: 491 HKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRLDRIISNGH 550
Query: 581 WNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPINGILRRNSIL 402
WNFIYP ILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPINGILRRNSIL
Sbjct: 551 WNFIYPSILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPINGILRRNSIL 610
Query: 401 AYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRFFFIPEEVH 222
AYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRFFFIPEEVH
Sbjct: 611 AYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRFFFIPEEVH 670
Query: 221 ILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSGDIHFPGET 42
ILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSGDIHFPGET
Sbjct: 671 ILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSGDIHFPGET 730
Query: 41 DKISRHSGILIPP 3
DKISRHSGILIPP
Sbjct: 731 DKISRHSGILIPP 743
>ref|YP_009335323.1| RNA polymerase beta subunit (chloroplast) [Nolina atopocarpa]
gb|AEZ49490.1| RNA polymerase beta'' subunit, partial (plastid) [Nolina atopocarpa]
gb|APO12381.1| RNA polymerase beta subunit (chloroplast) [Nolina atopocarpa]
Length = 1385
Score = 503 bits (1294), Expect = e-164
Identities = 253/261 (96%), Positives = 255/261 (97%)
Frame = -3
Query: 785 STVYSVFSHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRL 606
S++ S HKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRL
Sbjct: 487 SSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRL 546
Query: 605 DRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING 426
DRIISNGHWNFIYP ILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING
Sbjct: 547 DRIISNGHWNFIYPSILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING 606
Query: 425 ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF 246
ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKE SPKYQMKVDRF
Sbjct: 607 ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKELSPKYQMKVDRF 666
Query: 245 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG 66
FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG
Sbjct: 667 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG 726
Query: 65 DIHFPGETDKISRHSGILIPP 3
DIHFPGETDKISRHSGILIPP
Sbjct: 727 DIHFPGETDKISRHSGILIPP 747
>gb|AEX94836.1| RNA polymerase beta' subunit (chloroplast) [Maianthemum stellatum]
Length = 1385
Score = 503 bits (1294), Expect = e-164
Identities = 253/261 (96%), Positives = 255/261 (97%)
Frame = -3
Query: 785 STVYSVFSHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRL 606
S++ S HKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRL
Sbjct: 487 SSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRL 546
Query: 605 DRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING 426
DRIISNGHWN IYP ILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING
Sbjct: 547 DRIISNGHWNLIYPSILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING 606
Query: 425 ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF 246
ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF
Sbjct: 607 ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF 666
Query: 245 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG 66
FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG
Sbjct: 667 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG 726
Query: 65 DIHFPGETDKISRHSGILIPP 3
DIHFPGETDKISRHSGILIPP
Sbjct: 727 DIHFPGETDKISRHSGILIPP 747
>ref|YP_009431208.1| RNA polymerase beta' subunit (chloroplast) [Maianthemum bicolor]
gb|ASW26644.1| RNA polymerase beta' subunit (chloroplast) [Maianthemum bicolor]
Length = 1381
Score = 501 bits (1290), Expect = e-164
Identities = 251/261 (96%), Positives = 256/261 (98%)
Frame = -3
Query: 785 STVYSVFSHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRL 606
S++ S HKDQDQMNVHSFSVDERYSSDLSITKDRV+HKLLDPSGTRKK+REILDYSRL
Sbjct: 483 SSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVKHKLLDPSGTRKKEREILDYSRL 542
Query: 605 DRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING 426
DRIISNGHWNFIYP ILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING
Sbjct: 543 DRIISNGHWNFIYPSILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING 602
Query: 425 ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF 246
ILRRNSILAYFDDPRYRRKSSGITKYGTAE+DSIVKKEDLIEYRGAKEFSPKYQMKVDRF
Sbjct: 603 ILRRNSILAYFDDPRYRRKSSGITKYGTAEMDSIVKKEDLIEYRGAKEFSPKYQMKVDRF 662
Query: 245 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG 66
FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG
Sbjct: 663 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG 722
Query: 65 DIHFPGETDKISRHSGILIPP 3
DIHFPGETDKISRHSGILIPP
Sbjct: 723 DIHFPGETDKISRHSGILIPP 743
>ref|YP_009432293.1| RNA polymerase beta' subunit (chloroplast) [Polygonatum stenophyllum]
gb|ATB18548.1| RNA polymerase beta' subunit (chloroplast) [Polygonatum stenophyllum]
Length = 1381
Score = 499 bits (1285), Expect = e-163
Identities = 252/261 (96%), Positives = 254/261 (97%)
Frame = -3
Query: 785 STVYSVFSHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRL 606
S++ S HKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKK REILDYSRL
Sbjct: 483 SSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKYREILDYSRL 542
Query: 605 DRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING 426
DRIISNGHWNFIYP ILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING
Sbjct: 543 DRIISNGHWNFIYPSILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING 602
Query: 425 ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF 246
ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKE SPKYQMKVDRF
Sbjct: 603 ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKELSPKYQMKVDRF 662
Query: 245 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG 66
FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG
Sbjct: 663 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG 722
Query: 65 DIHFPGETDKISRHSGILIPP 3
DIHFPGETDKISRHSGILIPP
Sbjct: 723 DIHFPGETDKISRHSGILIPP 743
>gb|AEX94832.1| RNA polymerase beta' subunit (chloroplast) [Liriope spicata]
Length = 1385
Score = 499 bits (1285), Expect = e-163
Identities = 252/261 (96%), Positives = 254/261 (97%)
Frame = -3
Query: 785 STVYSVFSHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRL 606
S++ S HKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRL
Sbjct: 487 SSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRL 546
Query: 605 DRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING 426
DRIISNGHWNFIYP ILQENSDFLAKRRRNRFLIPLQYDQ REKELI SFGISIEIPING
Sbjct: 547 DRIISNGHWNFIYPSILQENSDFLAKRRRNRFLIPLQYDQGREKELISSFGISIEIPING 606
Query: 425 ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF 246
ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF
Sbjct: 607 ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF 666
Query: 245 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG 66
FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG
Sbjct: 667 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG 726
Query: 65 DIHFPGETDKISRHSGILIPP 3
DIHFPGETDKISRHSGILIPP
Sbjct: 727 DIHFPGETDKISRHSGILIPP 747
>gb|AEX94830.1| RNA polymerase beta' subunit (chloroplast) [Dasylirion wheeleri]
Length = 1385
Score = 499 bits (1285), Expect = e-163
Identities = 252/261 (96%), Positives = 255/261 (97%)
Frame = -3
Query: 785 STVYSVFSHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRL 606
S++ S HKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLD SGTRKKDREILDYSRL
Sbjct: 487 SSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDLSGTRKKDREILDYSRL 546
Query: 605 DRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING 426
DRIISNGHWNFIYP ILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING
Sbjct: 547 DRIISNGHWNFIYPSILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING 606
Query: 425 ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF 246
ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKE+LIEYRGAKEFSPKYQMKVDRF
Sbjct: 607 ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKENLIEYRGAKEFSPKYQMKVDRF 666
Query: 245 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG 66
FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG
Sbjct: 667 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG 726
Query: 65 DIHFPGETDKISRHSGILIPP 3
DIHFPGETDKISRHSGILIPP
Sbjct: 727 DIHFPGETDKISRHSGILIPP 747
>gb|AEX94834.1| RNA polymerase beta' subunit (chloroplast) [Ruscus aculeatus]
Length = 1387
Score = 499 bits (1285), Expect = e-163
Identities = 250/261 (95%), Positives = 255/261 (97%)
Frame = -3
Query: 785 STVYSVFSHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRL 606
S++ S HKDQDQMNVHSFSVD+RYSSDLSITKDRVRHKLLDPSGTRKKDRE LDYSRL
Sbjct: 487 SSIVSFSLHKDQDQMNVHSFSVDKRYSSDLSITKDRVRHKLLDPSGTRKKDRESLDYSRL 546
Query: 605 DRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING 426
DRIISNGHWNFIYP ILQENSDFLAKRRRNRF+IPLQYDQEREKELIPSFGISIEIPING
Sbjct: 547 DRIISNGHWNFIYPSILQENSDFLAKRRRNRFIIPLQYDQEREKELIPSFGISIEIPING 606
Query: 425 ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF 246
ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF
Sbjct: 607 ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF 666
Query: 245 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG 66
FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKS+ELKIFSG
Sbjct: 667 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSMELKIFSG 726
Query: 65 DIHFPGETDKISRHSGILIPP 3
DIHFPGETDKISRHSGILIPP
Sbjct: 727 DIHFPGETDKISRHSGILIPP 747
>ref|YP_009183189.1| RNA polymerase beta' subunit (chloroplast) [Polygonatum
verticillatum]
ref|YP_009236350.1| DNA-directed RNA polymerase beta'' chain (chloroplast) [Polygonatum
sibiricum]
gb|ALM87707.1| RNA polymerase beta' subunit (chloroplast) [Polygonatum
verticillatum]
gb|AMF84063.1| DNA-directed RNA polymerase beta'' chain (chloroplast) [Polygonatum
sibiricum]
Length = 1382
Score = 494 bits (1273), Expect = e-161
Identities = 252/262 (96%), Positives = 254/262 (96%), Gaps = 1/262 (0%)
Frame = -3
Query: 785 STVYSVFSHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRL 606
S++ S HKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKK REILDYSRL
Sbjct: 483 SSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKYREILDYSRL 542
Query: 605 DRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQ-YDQEREKELIPSFGISIEIPIN 429
DRIISNGHWNFIYP ILQENSDFLAKRRRNRFLIPLQ YDQEREKELIPSFGISIEIPIN
Sbjct: 543 DRIISNGHWNFIYPSILQENSDFLAKRRRNRFLIPLQQYDQEREKELIPSFGISIEIPIN 602
Query: 428 GILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDR 249
GILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKE SPKYQMKVDR
Sbjct: 603 GILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKELSPKYQMKVDR 662
Query: 248 FFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFS 69
FFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFS
Sbjct: 663 FFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFS 722
Query: 68 GDIHFPGETDKISRHSGILIPP 3
GDIHFPGETDKISRHSGILIPP
Sbjct: 723 GDIHFPGETDKISRHSGILIPP 744
>gb|AEX94835.1| RNA polymerase beta' subunit (chloroplast) [Sansevieria trifasciata]
Length = 1384
Score = 488 bits (1255), Expect = e-158
Identities = 247/261 (94%), Positives = 251/261 (96%)
Frame = -3
Query: 785 STVYSVFSHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRL 606
S++ S HKDQDQ NVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDRE LDYSRL
Sbjct: 487 SSIVSFSLHKDQDQTNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDRESLDYSRL 546
Query: 605 DRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING 426
DRIISNGHWNFIYP ILQENSDFLAKRRRN+F+IPLQYDQEREKELIPSFGISIEIPING
Sbjct: 547 DRIISNGHWNFIYPSILQENSDFLAKRRRNKFIIPLQYDQEREKELIPSFGISIEIPING 606
Query: 425 ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF 246
ILRRNSILAYFDDPRYRRKSSGITKYGTAEV VKKEDLIEYRGAKEFSPKYQMKVDRF
Sbjct: 607 ILRRNSILAYFDDPRYRRKSSGITKYGTAEV---VKKEDLIEYRGAKEFSPKYQMKVDRF 663
Query: 245 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG 66
FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG
Sbjct: 664 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG 723
Query: 65 DIHFPGETDKISRHSGILIPP 3
DIHFPGETDKISRHSGILIPP
Sbjct: 724 DIHFPGETDKISRHSGILIPP 744
>gb|ABD93797.1| RNA polymerase beta chain, partial (chloroplast) [Lomandra obliqua]
Length = 862
Score = 471 bits (1212), Expect = e-157
Identities = 237/261 (90%), Positives = 243/261 (93%)
Frame = -3
Query: 785 STVYSVFSHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRL 606
S++ S HKDQDQMNVH FSVDERY SDLSIT D+VRHKLLD SGT KKDREILDYSRL
Sbjct: 39 SSIVSFSLHKDQDQMNVHYFSVDERYISDLSITNDQVRHKLLDLSGTSKKDREILDYSRL 98
Query: 605 DRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING 426
DRI+SN HWNFIYP ILQEN DFLAKRRRNRFLIPLQYDQEREKELIPSF ISIEIPING
Sbjct: 99 DRIVSNSHWNFIYPSILQENYDFLAKRRRNRFLIPLQYDQEREKELIPSFSISIEIPING 158
Query: 425 ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF 246
ILRRNSILAYFDDPRYRRKSSGITKY T E DSIVKKEDLIEYRG KEFSPKYQMKVDRF
Sbjct: 159 ILRRNSILAYFDDPRYRRKSSGITKYSTIEADSIVKKEDLIEYRGTKEFSPKYQMKVDRF 218
Query: 245 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG 66
FFIPEEVHILPGSSSIMVRNNSIIGV+TQLALNTNTRS VGGLVRVERKKKSIELKIFSG
Sbjct: 219 FFIPEEVHILPGSSSIMVRNNSIIGVNTQLALNTNTRSLVGGLVRVERKKKSIELKIFSG 278
Query: 65 DIHFPGETDKISRHSGILIPP 3
DIHFPGETDKISRHSGIL+PP
Sbjct: 279 DIHFPGETDKISRHSGILVPP 299
>ref|YP_009370011.1| RNA polymerase beta' subunit (chloroplast) [Asparagus officinalis]
gb|ARO91417.1| RNA polymerase beta' subunit (chloroplast) [Asparagus officinalis]
Length = 1385
Score = 484 bits (1245), Expect = e-157
Identities = 243/261 (93%), Positives = 249/261 (95%)
Frame = -3
Query: 785 STVYSVFSHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRL 606
S++ S HKDQDQMNVHSFSVDERY SDLSIT D+VRHKLLD SGT KKDREI+DYSRL
Sbjct: 483 SSIVSFSLHKDQDQMNVHSFSVDERYISDLSITNDQVRHKLLDLSGTLKKDREIIDYSRL 542
Query: 605 DRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING 426
DRIISN HWNFIYP ILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING
Sbjct: 543 DRIISNSHWNFIYPSILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING 602
Query: 425 ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF 246
ILRRNSI+AYFDDPRYRRKSSGITKYGT EVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF
Sbjct: 603 ILRRNSIIAYFDDPRYRRKSSGITKYGTVEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF 662
Query: 245 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG 66
FFIPEEVHILPGSS IMVRNNSIIGVDTQLALNTNT+SRVGGLVRVERKKKSIELKIFSG
Sbjct: 663 FFIPEEVHILPGSSFIMVRNNSIIGVDTQLALNTNTKSRVGGLVRVERKKKSIELKIFSG 722
Query: 65 DIHFPGETDKISRHSGILIPP 3
DIHFPGETDKISRHSGILIPP
Sbjct: 723 DIHFPGETDKISRHSGILIPP 743
>gb|AEX94815.1| RNA polymerase beta' subunit (chloroplast) [Asparagus officinalis]
gb|AEZ49471.1| RNA polymerase beta'' subunit, partial (plastid) [Asparagus
officinalis]
emb|CUS18625.1| RNA polymerase beta' subunit (plastid) [Asparagus officinalis]
emb|CUS18706.1| RNA polymerase beta' subunit (plastid) [Asparagus officinalis]
Length = 1389
Score = 484 bits (1245), Expect = e-157
Identities = 243/261 (93%), Positives = 249/261 (95%)
Frame = -3
Query: 785 STVYSVFSHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRL 606
S++ S HKDQDQMNVHSFSVDERY SDLSIT D+VRHKLLD SGT KKDREI+DYSRL
Sbjct: 487 SSIVSFSLHKDQDQMNVHSFSVDERYISDLSITNDQVRHKLLDLSGTLKKDREIIDYSRL 546
Query: 605 DRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING 426
DRIISN HWNFIYP ILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING
Sbjct: 547 DRIISNSHWNFIYPSILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING 606
Query: 425 ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF 246
ILRRNSI+AYFDDPRYRRKSSGITKYGT EVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF
Sbjct: 607 ILRRNSIIAYFDDPRYRRKSSGITKYGTVEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF 666
Query: 245 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG 66
FFIPEEVHILPGSS IMVRNNSIIGVDTQLALNTNT+SRVGGLVRVERKKKSIELKIFSG
Sbjct: 667 FFIPEEVHILPGSSFIMVRNNSIIGVDTQLALNTNTKSRVGGLVRVERKKKSIELKIFSG 726
Query: 65 DIHFPGETDKISRHSGILIPP 3
DIHFPGETDKISRHSGILIPP
Sbjct: 727 DIHFPGETDKISRHSGILIPP 747
>gb|ABD93778.1| RNA polymerase beta chain, partial (chloroplast) [Asparagus
officinalis]
Length = 860
Score = 469 bits (1207), Expect = e-157
Identities = 237/261 (90%), Positives = 245/261 (93%)
Frame = -3
Query: 785 STVYSVFSHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRL 606
S++ S HKDQDQMNVHSFSVDERY SDLSIT D+VRHKLLD SGT KKDREI+DYSRL
Sbjct: 33 SSIVSFSLHKDQDQMNVHSFSVDERYISDLSITNDQVRHKLLDLSGTLKKDREIIDYSRL 92
Query: 605 DRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING 426
DRIISN HWNFIYP ILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIP G
Sbjct: 93 DRIISNSHWNFIYPSILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPNFG 152
Query: 425 ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF 246
+LRRNSI+AYFDDPRYRRKSSGITKYGT EVDSI KKEDLIEYRGAKEFSPKYQMKVDRF
Sbjct: 153 VLRRNSIIAYFDDPRYRRKSSGITKYGTVEVDSIGKKEDLIEYRGAKEFSPKYQMKVDRF 212
Query: 245 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG 66
FFIPEEVHILPGSS IMVRNNSIIGVDTQLALNTNT+SRVGGLVRVERKKKSIELKIFSG
Sbjct: 213 FFIPEEVHILPGSSFIMVRNNSIIGVDTQLALNTNTKSRVGGLVRVERKKKSIELKIFSG 272
Query: 65 DIHFPGETDKISRHSGILIPP 3
DIHFPG+TDKISR SGILIPP
Sbjct: 273 DIHFPGKTDKISRPSGILIPP 293
>ref|YP_009431122.1| RNA polymerase beta' subunit (chloroplast) [Asparagus schoberioides]
gb|ASW26558.1| RNA polymerase beta' subunit (chloroplast) [Asparagus schoberioides]
Length = 1385
Score = 483 bits (1242), Expect = e-156
Identities = 242/261 (92%), Positives = 249/261 (95%)
Frame = -3
Query: 785 STVYSVFSHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRL 606
S++ S HKDQDQMNVHSFSVDERY SDLSIT D+VRHKLLD SGT KKD+EI+DYSRL
Sbjct: 483 SSIVSFSLHKDQDQMNVHSFSVDERYISDLSITNDQVRHKLLDLSGTLKKDKEIIDYSRL 542
Query: 605 DRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING 426
DRIISN HWNFIYP ILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING
Sbjct: 543 DRIISNSHWNFIYPSILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING 602
Query: 425 ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF 246
ILRRNSI+AYFDDPRYRRKSSGITKYGT EVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF
Sbjct: 603 ILRRNSIIAYFDDPRYRRKSSGITKYGTVEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF 662
Query: 245 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG 66
FFIPEEVHILPGSS IMVRNNSIIGVDTQLALNTNT+SRVGGLVRVERKKKSIELKIFSG
Sbjct: 663 FFIPEEVHILPGSSFIMVRNNSIIGVDTQLALNTNTKSRVGGLVRVERKKKSIELKIFSG 722
Query: 65 DIHFPGETDKISRHSGILIPP 3
DIHFPGETDKISRHSGILIPP
Sbjct: 723 DIHFPGETDKISRHSGILIPP 743
>ref|YP_009432547.1| RNA polymerase beta' subunit (chloroplast) [Cordyline indivisa]
gb|ATB18829.1| RNA polymerase beta' subunit (chloroplast) [Cordyline indivisa]
Length = 1384
Score = 480 bits (1236), Expect = e-156
Identities = 244/261 (93%), Positives = 246/261 (94%)
Frame = -3
Query: 785 STVYSVFSHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRL 606
S++ S HKDQDQMNVHSFSVDERY SDLSIT DRVRHKLLDPSGT KKDREILDYSRL
Sbjct: 483 SSIVSFSLHKDQDQMNVHSFSVDERYISDLSITNDRVRHKLLDPSGTGKKDREILDYSRL 542
Query: 605 DRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING 426
DRIISN HWNFIYP ILQENSDFLAK RRNRFLIPLQYDQEREKELIPSFGISIEIPING
Sbjct: 543 DRIISNSHWNFIYPSILQENSDFLAKGRRNRFLIPLQYDQEREKELIPSFGISIEIPING 602
Query: 425 ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF 246
IL RNSILAYFDDPRYRRKSSGITKYGT EVDSIVKKEDLIEYRGAKEFSPK QMKVDRF
Sbjct: 603 ILCRNSILAYFDDPRYRRKSSGITKYGTVEVDSIVKKEDLIEYRGAKEFSPKNQMKVDRF 662
Query: 245 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG 66
FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRV GLVRVERKKKSIELKIFSG
Sbjct: 663 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVDGLVRVERKKKSIELKIFSG 722
Query: 65 DIHFPGETDKISRHSGILIPP 3
DIHFPGE DKISRHSGILIPP
Sbjct: 723 DIHFPGEADKISRHSGILIPP 743
>gb|AEX94827.1| RNA polymerase beta' subunit (chloroplast) [Cordyline australis]
Length = 1388
Score = 480 bits (1236), Expect = e-156
Identities = 244/261 (93%), Positives = 246/261 (94%)
Frame = -3
Query: 785 STVYSVFSHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRL 606
S++ S HKDQDQMNVHSFSVDERY SDLSIT DRVRHKLLDPSGT KKDREILDYSRL
Sbjct: 487 SSIVSFSLHKDQDQMNVHSFSVDERYISDLSITNDRVRHKLLDPSGTGKKDREILDYSRL 546
Query: 605 DRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING 426
DRIISN HWNFIYP ILQENSDFLAK RRNRFLIPLQYDQEREKELIPSFGISIEIPING
Sbjct: 547 DRIISNSHWNFIYPSILQENSDFLAKGRRNRFLIPLQYDQEREKELIPSFGISIEIPING 606
Query: 425 ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF 246
IL RNSILAYFDDPRYRRKSSGITKYGT EVDSIVKKEDLIEYRGAKEFSPK QMKVDRF
Sbjct: 607 ILCRNSILAYFDDPRYRRKSSGITKYGTVEVDSIVKKEDLIEYRGAKEFSPKNQMKVDRF 666
Query: 245 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG 66
FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRV GLVRVERKKKSIELKIFSG
Sbjct: 667 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVDGLVRVERKKKSIELKIFSG 726
Query: 65 DIHFPGETDKISRHSGILIPP 3
DIHFPGE DKISRHSGILIPP
Sbjct: 727 DIHFPGEADKISRHSGILIPP 747
>gb|AEX94813.1| RNA polymerase beta' subunit (chloroplast) [Scadoxus cinnabarinus]
Length = 1373
Score = 479 bits (1232), Expect = e-155
Identities = 242/261 (92%), Positives = 247/261 (94%)
Frame = -3
Query: 785 STVYSVFSHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYSRL 606
S++ S HKDQDQMN HSFSVDERY SD IT DRV+HKLLDPSG KKDREILDYSRL
Sbjct: 483 SSIVSFSLHKDQDQMNAHSFSVDERYISDRLITNDRVKHKLLDPSG--KKDREILDYSRL 540
Query: 605 DRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING 426
DR+ISNGHWNFIYP ILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING
Sbjct: 541 DRVISNGHWNFIYPSILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPING 600
Query: 425 ILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF 246
ILRRNSILAYF+DPRYRRKSSGITKYG EVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF
Sbjct: 601 ILRRNSILAYFEDPRYRRKSSGITKYGIVEVDSIVKKEDLIEYRGAKEFSPKYQMKVDRF 660
Query: 245 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG 66
FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG
Sbjct: 661 FFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIFSG 720
Query: 65 DIHFPGETDKISRHSGILIPP 3
DIHFPGETDKISRHSGILIPP
Sbjct: 721 DIHFPGETDKISRHSGILIPP 741