BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon23_contig00013011
         (1029 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020250513.1| LOW QUALITY PROTEIN: RNA polymerase sigma fa...   375   e-124
ref|XP_010913927.1| PREDICTED: RNA polymerase sigma factor sigE,...   350   e-114
ref|XP_008810822.1| PREDICTED: RNA polymerase sigma factor sigE,...   345   e-112
gb|ONK55039.1| uncharacterized protein A4U43_UnF8330 [Asparagus ...   326   e-107
ref|XP_010266467.1| PREDICTED: RNA polymerase sigma factor sigE,...   332   e-107
ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor sigE,...   322   e-103
ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,...   317   e-101
ref|XP_009410848.1| PREDICTED: RNA polymerase sigma factor sigE,...   313   e-100
gb|OVA11451.1| RNA polymerase sigma-70 [Macleaya cordata]             313   e-100
ref|XP_020105381.1| RNA polymerase sigma factor sigE, chloroplas...   313   e-100
ref|XP_022922776.1| RNA polymerase sigma factor sigE, chloroplas...   311   4e-99
ref|XP_022922775.1| RNA polymerase sigma factor sigE, chloroplas...   311   4e-99
ref|XP_022984454.1| RNA polymerase sigma factor sigE, chloroplas...   310   7e-99
ref|XP_022984453.1| RNA polymerase sigma factor sigE, chloroplas...   310   9e-99
ref|XP_023552213.1| RNA polymerase sigma factor sigE, chloroplas...   310   1e-98
gb|PON96872.1| RNA polymerase sigma factor [Trema orientalis]         308   2e-97
ref|XP_016737339.1| PREDICTED: RNA polymerase sigma factor sigE,...   307   2e-97
ref|XP_012440029.1| PREDICTED: RNA polymerase sigma factor sigE,...   306   5e-97
ref|XP_017636101.1| PREDICTED: RNA polymerase sigma factor sigE,...   306   5e-97
gb|ANW72278.1| RNA polymerase sigma factor sigE [Tradescantia hi...   304   9e-97

>ref|XP_020250513.1| LOW QUALITY PROTEIN: RNA polymerase sigma factor sigE,
           chloroplastic/mitochondrial-like [Asparagus officinalis]
          Length = 478

 Score =  375 bits (962), Expect = e-124
 Identities = 214/314 (68%), Positives = 241/314 (76%), Gaps = 9/314 (2%)
 Frame = -2

Query: 920 IPLEQL--KQRRRPKKTNPTKAQTIKQQPNNELDYNEVAAALENIYKLSPAADVADAE-- 753
           IPL+Q   +QR+RP K+ P K++    +P+ +LDYNEVAAALEN+YKLSP ADVA+ +  
Sbjct: 54  IPLDQQPKRQRKRPSKSKPNKSK----KPDADLDYNEVAAALENLYKLSPPADVAEEKKV 109

Query: 752 ----VFDRKRR-KDLGGGENIDNIXXXXXXXXXXXXXXXXXXVEGKKRGREGEIRCGFSE 588
               V +RKRR K LG  + ++ +                     +KR REGEI  G S+
Sbjct: 110 EIDVVRNRKRRPKRLGLEKRVEAM---------------------RKRSREGEIGGGSSK 148

Query: 587 KDGXXXXXXXXXXXEYSVSTTDVVSLDWRKMKIPPVLSSSEQDRLFKLMQPMKAIFEVKE 408
           K+            EYSVST D+ SLDWR++KIPPVL S+E  RLFKLMQPMKAI EVKE
Sbjct: 149 KE--EEEEIDRLVREYSVST-DLGSLDWRRVKIPPVLGSAEHTRLFKLMQPMKAISEVKE 205

Query: 407 NLHSDLNKEPAEGELAAAVNMTVPQLRRHIEVGHAARNKLIKHNLRLVLFVINKYYQEIA 228
           NLH DLNKEP EGELAAAVNMTV +LR+HIEVG AARNKLIKHNLRLVLFVINKYYQEIA
Sbjct: 206 NLHKDLNKEPTEGELAAAVNMTVSELRKHIEVGQAARNKLIKHNLRLVLFVINKYYQEIA 265

Query: 227 SGDKFQDLCQAGVKGLITAIDRFEPKRGFRLSTYGLFWIRHSIIRSMTTSSFTRVSFGIE 48
           SGDKFQDLCQAGVKGLITAIDRFEPKRGFRLSTYGLFWIRHSIIRSMTTSSFTRVSFGIE
Sbjct: 266 SGDKFQDLCQAGVKGLITAIDRFEPKRGFRLSTYGLFWIRHSIIRSMTTSSFTRVSFGIE 325

Query: 47  SVRQEIQKAKLELM 6
           SVRQEIQKAKLEL+
Sbjct: 326 SVRQEIQKAKLELI 339


>ref|XP_010913927.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Elaeis guineensis]
 ref|XP_010913942.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Elaeis guineensis]
          Length = 498

 Score =  350 bits (897), Expect = e-114
 Identities = 209/345 (60%), Positives = 235/345 (68%), Gaps = 8/345 (2%)
 Frame = -2

Query: 1019 RPSPNGVRPASIVAFKTDRT-KCSAVAASQEPATIPLEQLKQRRRPKKTNPTKAQTIKQQ 843
            R SP   RP   +AF+TDR  KCSA A S E    P    K  +R + T+   A T  Q 
Sbjct: 24   RRSPAFRRPFFCLAFRTDRAAKCSAAAVSSEAVKPPQ---KPPKRAQATSVDAAPTATQ- 79

Query: 842  PNNELDYNEVAAALENIYKLSPAADVADAEVFDRKRRKDLGG-------GENIDNIXXXX 684
               +LDYNEVAAALENIYKLSPA +V+D E  D++ R+  G        G+  +      
Sbjct: 80   ---DLDYNEVAAALENIYKLSPA-EVSDVEETDQRGRRRRGRSRKRAKEGDGEEGNVVRN 135

Query: 683  XXXXXXXXXXXXXXVEGKKRGREGEIRCGFSEKDGXXXXXXXXXXXEYSVSTTDVVSLDW 504
                             +++  E E+     E+              YSVST D+ SLDW
Sbjct: 136  RKRRVRRLSLEKRIALRRRKDEEVEMVAARDERRDLDEDVGKLLRE-YSVST-DLASLDW 193

Query: 503  RKMKIPPVLSSSEQDRLFKLMQPMKAIFEVKENLHSDLNKEPAEGELAAAVNMTVPQLRR 324
            +KMKIPPVLSS+E + LF+LMQPMKAIFEVK NL+ DLN+EP + ELAAAVNMTVPQLRR
Sbjct: 194  KKMKIPPVLSSAEHNWLFELMQPMKAIFEVKHNLNKDLNREPTDAELAAAVNMTVPQLRR 253

Query: 323  HIEVGHAARNKLIKHNLRLVLFVINKYYQEIASGDKFQDLCQAGVKGLITAIDRFEPKRG 144
            HIEVG AARNKLIKHNLRLVLFVINKYY EIASG KFQDLCQAGVKGLITAIDRFE KRG
Sbjct: 254  HIEVGRAARNKLIKHNLRLVLFVINKYYPEIASGQKFQDLCQAGVKGLITAIDRFEAKRG 313

Query: 143  FRLSTYGLFWIRHSIIRSMTTSSFTRVSFGIESVRQEIQKAKLEL 9
            FRLSTYGLFWIRHSIIRSMT SSFTRV FGIESVRQEIQKAKLEL
Sbjct: 314  FRLSTYGLFWIRHSIIRSMTISSFTRVPFGIESVRQEIQKAKLEL 358


>ref|XP_008810822.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Phoenix dactylifera]
          Length = 498

 Score =  345 bits (885), Expect = e-112
 Identities = 203/348 (58%), Positives = 231/348 (66%), Gaps = 8/348 (2%)
 Frame = -2

Query: 1028 SRHRPSPNGVRPASIVAFKTDRT-KCSAVAASQEPATIPLEQLKQRRRPKKTNPTKAQTI 852
            +R  P+P   RP   +AF+ D T KCSA A       IP E +K  ++  K     +   
Sbjct: 23   ARRLPAPR--RPFLCLAFRADWTAKCSAAA-------IPSEAVKPPQKSSKRAQAASVDA 73

Query: 851  KQQPNNELDYNEVAAALENIYKLSPAADVADAEVFDRKRRKDLGG-------GENIDNIX 693
                  +LDYNEVAAALENIYKLSPA +V+D E  DR+ R+  G        G+  +   
Sbjct: 74   PPTATQDLDYNEVAAALENIYKLSPA-EVSDVEEADRRGRRRRGRSRKRAKEGDGEEGNV 132

Query: 692  XXXXXXXXXXXXXXXXXVEGKKRGREGEIRCGFSEKDGXXXXXXXXXXXEYSVSTTDVVS 513
                                +++  E E      E+              YSVST D+ S
Sbjct: 133  VRNRKRRVRRLSLEKRIASRRRKDEEVEAAAARDERRDLDEDGEKLLRE-YSVST-DLAS 190

Query: 512  LDWRKMKIPPVLSSSEQDRLFKLMQPMKAIFEVKENLHSDLNKEPAEGELAAAVNMTVPQ 333
            LDW+KMKIPPVLSS+E +RLF+LMQPMKAIFEVK+NL  DLN+EP + ELA AVNMTVP+
Sbjct: 191  LDWKKMKIPPVLSSAEHNRLFELMQPMKAIFEVKKNLDKDLNREPTDAELAVAVNMTVPR 250

Query: 332  LRRHIEVGHAARNKLIKHNLRLVLFVINKYYQEIASGDKFQDLCQAGVKGLITAIDRFEP 153
            LRRHIEVG AARN LIKHNLRLVLFVINKYY EIASG KFQDLCQAGVKGLITAIDRFEP
Sbjct: 251  LRRHIEVGQAARNMLIKHNLRLVLFVINKYYPEIASGQKFQDLCQAGVKGLITAIDRFEP 310

Query: 152  KRGFRLSTYGLFWIRHSIIRSMTTSSFTRVSFGIESVRQEIQKAKLEL 9
            KRGFRLSTYGLFWIRHSI RSMT SSFTRV FGIESVRQEIQKAKLEL
Sbjct: 311  KRGFRLSTYGLFWIRHSITRSMTVSSFTRVPFGIESVRQEIQKAKLEL 358


>gb|ONK55039.1| uncharacterized protein A4U43_UnF8330 [Asparagus officinalis]
          Length = 346

 Score =  326 bits (835), Expect = e-107
 Identities = 173/209 (82%), Positives = 183/209 (87%)
 Frame = -2

Query: 632 KKRGREGEIRCGFSEKDGXXXXXXXXXXXEYSVSTTDVVSLDWRKMKIPPVLSSSEQDRL 453
           +KR REGEI  G S+K+            EYSVST D+ SLDWR++KIPPVL S+E  RL
Sbjct: 2   RKRSREGEIGGGSSKKE--EEEEIDRLVREYSVST-DLGSLDWRRVKIPPVLGSAEHTRL 58

Query: 452 FKLMQPMKAIFEVKENLHSDLNKEPAEGELAAAVNMTVPQLRRHIEVGHAARNKLIKHNL 273
           FKLMQPMKAI EVKENLH DLNKEP EGELAAAVNMTV +LR+HIEVG AARNKLIKHNL
Sbjct: 59  FKLMQPMKAISEVKENLHKDLNKEPTEGELAAAVNMTVSELRKHIEVGQAARNKLIKHNL 118

Query: 272 RLVLFVINKYYQEIASGDKFQDLCQAGVKGLITAIDRFEPKRGFRLSTYGLFWIRHSIIR 93
           RLVLFVINKYYQEIASGDKFQDLCQAGVKGLITAIDRFEPKRGFRLSTYGLFWIRHSIIR
Sbjct: 119 RLVLFVINKYYQEIASGDKFQDLCQAGVKGLITAIDRFEPKRGFRLSTYGLFWIRHSIIR 178

Query: 92  SMTTSSFTRVSFGIESVRQEIQKAKLELM 6
           SMTTSSFTRVSFGIESVRQEIQKAKLEL+
Sbjct: 179 SMTTSSFTRVSFGIESVRQEIQKAKLELI 207


>ref|XP_010266467.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Nelumbo nucifera]
          Length = 514

 Score =  332 bits (850), Expect = e-107
 Identities = 190/346 (54%), Positives = 232/346 (67%), Gaps = 19/346 (5%)
 Frame = -2

Query: 986  IVAFKTDRTKCSAVAASQEPATIPLEQLK--QRRRPKKTNPTKAQTI-----KQQPNNEL 828
            I+AFKTD+ K  A+    EP  +P++  K  Q+R  + T P+K   +           E+
Sbjct: 33   ILAFKTDKAKDRALVTHHEPIPLPMDTPKENQKRLRRATKPSKRVKVVCSDEASSCTIEM 92

Query: 827  DYNEVAAALENIYKLSPAADVADAEVFDR------KRRKDLG------GGENIDNIXXXX 684
            DYN+VAA LE+IYKLSP  DV+D +  DR      + RK LG      G E+ DN+    
Sbjct: 93   DYNDVAAKLESIYKLSPPTDVSDVDDTDRVGRRRRRTRKKLGEADRKTGKESSDNVIRNH 152

Query: 683  XXXXXXXXXXXXXXVEGKKRGREGEIRCGFSEKDGXXXXXXXXXXXEYSVSTTDVVSLDW 504
                             +++  EG ++    ++             EYSVST D+ SLDW
Sbjct: 153  NKNKRLSLDRRIAL---RRKKEEGAVQLSGVKEGSKEDGDVDKLVGEYSVST-DLASLDW 208

Query: 503  RKMKIPPVLSSSEQDRLFKLMQPMKAIFEVKENLHSDLNKEPAEGELAAAVNMTVPQLRR 324
            +KMKIPPVL SSE   LFKLMQPM A+F++KENLH DL +EP +GELA + NM+V Q+RR
Sbjct: 209  KKMKIPPVLPSSEHAWLFKLMQPMNALFQMKENLHRDLGREPTDGELADSTNMSVFQVRR 268

Query: 323  HIEVGHAARNKLIKHNLRLVLFVINKYYQEIASGDKFQDLCQAGVKGLITAIDRFEPKRG 144
             IEVG AARN+LIKHNLRLVLFVINKY+QE A+G KFQDLCQAGVKGLITAIDRFEPKR 
Sbjct: 269  CIEVGRAARNRLIKHNLRLVLFVINKYFQEFANGPKFQDLCQAGVKGLITAIDRFEPKRR 328

Query: 143  FRLSTYGLFWIRHSIIRSMTTSSFTRVSFGIESVRQEIQKAKLELM 6
            FRLSTYGLFWIRH+I+RSMT SSFTRVSFG+ESVR EIQ+AKLELM
Sbjct: 329  FRLSTYGLFWIRHAIMRSMTLSSFTRVSFGLESVRVEIQRAKLELM 374


>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Vitis vinifera]
 emb|CBI22546.3| unnamed protein product, partial [Vitis vinifera]
          Length = 518

 Score =  322 bits (826), Expect = e-103
 Identities = 188/351 (53%), Positives = 228/351 (64%), Gaps = 19/351 (5%)
 Frame = -2

Query: 1001 VRPASIVAFKTDRTKCSAVAASQEPATIPLEQLKQ-----RRRPKKTNPTKA-QTIKQQP 840
            +R   ++AFK D+ K  A+    EP  +P+E  K      RR  K +   KA  T +  P
Sbjct: 30   LRRPLVLAFKADKAKNIALVTPHEPIPLPIETSKDHKKRLRRASKPSKRVKAVSTDEVSP 89

Query: 839  NN-ELDYNEVAAALENIYKLSPAADVADAEVFDR------KRRK------DLGGGENIDN 699
             + ELDYNE AA LENIYKLSPA DV++AE  +R      +RRK      D    E  DN
Sbjct: 90   CSVELDYNEAAAKLENIYKLSPATDVSEAEDLERVVRRGRQRRKRVTLADDKAEKEVSDN 149

Query: 698  IXXXXXXXXXXXXXXXXXXVEGKKRGREGEIRCGFSEKDGXXXXXXXXXXXEYSVSTTDV 519
            +                  +   K+  E  +     ++D                ++TD+
Sbjct: 150  VVRIHNKKPKRLSLEKRIALSKMKQ--EKAVASIQKKRDSKNEDENIDVLVREYSASTDL 207

Query: 518  VSLDWRKMKIPPVLSSSEQDRLFKLMQPMKAIFEVKENLHSDLNKEPAEGELAAAVNMTV 339
            VSLDW+KMKIPPVL  SE   LFKLMQPMK + EVK+NL  DL +EP +GELA A++M+ 
Sbjct: 208  VSLDWKKMKIPPVLPPSEHAWLFKLMQPMKGLLEVKDNLQKDLGREPTDGELAEAMSMSA 267

Query: 338  PQLRRHIEVGHAARNKLIKHNLRLVLFVINKYYQEIASGDKFQDLCQAGVKGLITAIDRF 159
             Q+RRH+EVG AARNKLIKHNLRLVLFVINKY+QE A+G KFQDLCQAGVKGLITAIDRF
Sbjct: 268  VQVRRHMEVGQAARNKLIKHNLRLVLFVINKYFQEFANGPKFQDLCQAGVKGLITAIDRF 327

Query: 158  EPKRGFRLSTYGLFWIRHSIIRSMTTSSFTRVSFGIESVRQEIQKAKLELM 6
            EPKR FRLSTYGLFWIRH+I+RSMT SSFTRVSFG+ESVR EIQ+AKLEL+
Sbjct: 328  EPKRSFRLSTYGLFWIRHAIMRSMTLSSFTRVSFGLESVRVEIQRAKLELL 378


>ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Fragaria vesca subsp. vesca]
          Length = 520

 Score =  317 bits (813), Expect = e-101
 Identities = 186/361 (51%), Positives = 228/361 (63%), Gaps = 29/361 (8%)
 Frame = -2

Query: 1001 VRPASIVAFKTDRTKCSAVAASQEPATIPLEQLKQ--------RRRPKKTNPTKAQTIKQ 846
            +R   IVAF+TD++   A+ A QE   +P+E  K+        R+ PK     KA  I++
Sbjct: 29   LRKPLIVAFRTDKSDKKALVAPQEKVPLPIETGKKVQKRLGKARKLPKSV---KAALIEE 85

Query: 845  QP--NNELDYNEVAAALENIYKLSPAADVADAEVFD-------RKRRKDLGGGENIDNIX 693
             P  + ELDYNE AA LEN+YK SP  + +D E  D       RKRRK       I  + 
Sbjct: 86   APTCDLELDYNEAAAKLENLYKRSPETEASDVENVDGLMIKRGRKRRK------KISEVD 139

Query: 692  XXXXXXXXXXXXXXXXXVEGKKRGREGEIRCGFSE------------KDGXXXXXXXXXX 549
                              + K+   +  +   +++            KD           
Sbjct: 140  DKVEKRTSDDIVVRSVTKKAKRLSLDKRVALKWNKDEKVAASVVRKRKDKRSENEMMEEL 199

Query: 548  XEYSVSTTDVVSLDWRKMKIPPVLSSSEQDRLFKLMQPMKAIFEVKENLHSDLNKEPAEG 369
                 ++TD+VSLDW+KM+IPPVLSSSE   LFKLMQPMK + EVKE L  DL +EP +G
Sbjct: 200  VREYSASTDLVSLDWKKMRIPPVLSSSEHTWLFKLMQPMKGLLEVKEILQKDLGREPNKG 259

Query: 368  ELAAAVNMTVPQLRRHIEVGHAARNKLIKHNLRLVLFVINKYYQEIASGDKFQDLCQAGV 189
            ELA A NMTV Q++RH+EVG AARNKLIKHNLRLVLFVINKY+Q+ A+G KFQDLCQAGV
Sbjct: 260  ELAEATNMTVVQVKRHLEVGRAARNKLIKHNLRLVLFVINKYFQDFANGPKFQDLCQAGV 319

Query: 188  KGLITAIDRFEPKRGFRLSTYGLFWIRHSIIRSMTTSSFTRVSFGIESVRQEIQKAKLEL 9
            KGLITAIDRFEP+R FRLSTYGLFWIRH+IIRSMT SSFTRVSFG+ESVR EIQKAKLE+
Sbjct: 320  KGLITAIDRFEPQRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFGLESVRAEIQKAKLEM 379

Query: 8    M 6
            +
Sbjct: 380  L 380


>ref|XP_009410848.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Musa acuminata subsp.
            malaccensis]
          Length = 505

 Score =  313 bits (802), Expect = e-100
 Identities = 190/345 (55%), Positives = 222/345 (64%), Gaps = 15/345 (4%)
 Frame = -2

Query: 998  RPASIVAFKTDR-TKCSAVA---------ASQEPATIPLEQLKQRRRPKKTNPTKAQTIK 849
            RP   +AFK     KCSA+          A +EP   P    K+ +R K      A T  
Sbjct: 29   RPFFFLAFKGGPGAKCSALVTPPEAVTQEAVKEPKKSPARAAKRSKRGKAVAVVAAPTTA 88

Query: 848  QQPN---NELDYNEVAAALENIYKLSPAADVADAEVFDRKRR-KDLGGGENIDNIXXXXX 681
               +    + DY+EVAAALENIYKLSPA DV+D E   R+   KD  G   +DN+     
Sbjct: 89   APSDACPRDPDYSEVAAALENIYKLSPA-DVSDGEESGRQTVVKD--GSLGVDNVVRNRK 145

Query: 680  XXXXXXXXXXXXXVEGKKRGREG-EIRCGFSEKDGXXXXXXXXXXXEYSVSTTDVVSLDW 504
                         +  + +   G E R G    +G                +T++ SLDW
Sbjct: 146  KRVKRLGLEERISMRRRPKEEAGTEARRG----EGREFDEDVEILVREYSGSTNLDSLDW 201

Query: 503  RKMKIPPVLSSSEQDRLFKLMQPMKAIFEVKENLHSDLNKEPAEGELAAAVNMTVPQLRR 324
            ++MKIPPVLSS+E   LFKLMQPMKAI +VKE ++ DLN+EP +GELA AVNM+VPQLRR
Sbjct: 202  KRMKIPPVLSSAEHTWLFKLMQPMKAILQVKEGMYKDLNREPTDGELADAVNMSVPQLRR 261

Query: 323  HIEVGHAARNKLIKHNLRLVLFVINKYYQEIASGDKFQDLCQAGVKGLITAIDRFEPKRG 144
            HIEV  AAR+KLIKHNLRLVLFVINKYY EIASG KFQ+ CQAG KGLITAIDRFEPKRG
Sbjct: 262  HIEVARAARDKLIKHNLRLVLFVINKYYPEIASGQKFQEFCQAGAKGLITAIDRFEPKRG 321

Query: 143  FRLSTYGLFWIRHSIIRSMTTSSFTRVSFGIESVRQEIQKAKLEL 9
            FRLSTY LFWIRHSIIRSMT SSFT+V FGIESVRQEI+KAKLEL
Sbjct: 322  FRLSTYSLFWIRHSIIRSMTLSSFTKVPFGIESVRQEIKKAKLEL 366


>gb|OVA11451.1| RNA polymerase sigma-70 [Macleaya cordata]
          Length = 513

 Score =  313 bits (802), Expect = e-100
 Identities = 189/356 (53%), Positives = 231/356 (64%), Gaps = 15/356 (4%)
 Frame = -2

Query: 1028 SRHRPSPNGVRPASIVAFKTDRTKCSAVAASQE----PATIPLEQLKQRRRPKKTNPTKA 861
            S HR SP  ++   ++AFK+D+TK +A+ A+QE    P   P EQ + RR  + +   KA
Sbjct: 22   SSHR-SP--LKRTLVLAFKSDKTKNTALVATQESIQLPRDAPNEQKRLRRATESSKRVKA 78

Query: 860  QTIKQQPNNELD--YNEVAAALENIYKLSPAADVADAE-----VFDRKRRKDLG--GGEN 708
             +  +     LD  Y E AA LENIYKL+   D +D E     V  R+R K +   G + 
Sbjct: 79   VSTDEPSPCALDLYYREAAAKLENIYKLNCPTDGSDVEDDYPVVRRRRRVKKVNKHGEKA 138

Query: 707  IDNIXXXXXXXXXXXXXXXXXXVEGKKRGREGEIRCGFSEKDGXXXXXXXXXXXE--YSV 534
                                      +R  + EI     ++DG              YSV
Sbjct: 139  TKEASWKVVRSQKKMKRLGLDERIAVRRKEKEEITLSQGKEDGKMKGGDDVERLVREYSV 198

Query: 533  STTDVVSLDWRKMKIPPVLSSSEQDRLFKLMQPMKAIFEVKENLHSDLNKEPAEGELAAA 354
            ST D+VSLDW+KMKIP VL SSE   LFKLMQPMK + +VKENLH D N+EP +GELAAA
Sbjct: 199  ST-DLVSLDWKKMKIPSVLPSSEHTWLFKLMQPMKVLLQVKENLHKDFNREPTDGELAAA 257

Query: 353  VNMTVPQLRRHIEVGHAARNKLIKHNLRLVLFVINKYYQEIASGDKFQDLCQAGVKGLIT 174
             NM+V Q++RHIEVG AARNKLIKHNLRLVLFVINKY+Q+ A+G ++QDLCQAGVKGLIT
Sbjct: 258  TNMSVIQVKRHIEVGQAARNKLIKHNLRLVLFVINKYFQDFANGPRYQDLCQAGVKGLIT 317

Query: 173  AIDRFEPKRGFRLSTYGLFWIRHSIIRSMTTSSFTRVSFGIESVRQEIQKAKLELM 6
            AIDRFEP+R  RLSTYGLFWIRH+IIRSMT SSFTRVSFG+ESVR EIQ+AKL+LM
Sbjct: 318  AIDRFEPQRKLRLSTYGLFWIRHAIIRSMTLSSFTRVSFGLESVRVEIQRAKLDLM 373


>ref|XP_020105381.1| RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like
            [Ananas comosus]
          Length = 523

 Score =  313 bits (802), Expect = e-100
 Identities = 191/362 (52%), Positives = 227/362 (62%), Gaps = 25/362 (6%)
 Frame = -2

Query: 1019 RPSPNGVRPASIVAFKTDR-TKCSAVAASQEPATIPLEQLKQR--RRPKKTNPTKA---- 861
            RP P    P    AF T R  +CSA+A+  E    P  +   R  ++PK+     A    
Sbjct: 26   RPPP----PLLFFAFDTTRPARCSALASPSETLKEPPRKTLTRAPKQPKRVKAVSAAAAA 81

Query: 860  ---------QTIKQQPNNELDYNEVAAALENIYKLSPA--ADVADAEVFDRKRR------ 732
                           P  +LDYNEVAAALENIYKLSPA  +D+ D+    +KRR      
Sbjct: 82   AATAAASSPSAAAPPPPPDLDYNEVAAALENIYKLSPAEVSDIEDSSGGRKKRRGRKKME 141

Query: 731  -KDLGGGENIDNIXXXXXXXXXXXXXXXXXXVEGKKRGREGEIRCGFSEKDGXXXXXXXX 555
             +D  G  N+  +                  V  K   +  ++R     ++         
Sbjct: 142  EEDEEGEGNVGRVSVVRSGRRRGRRLNLQKRVALKSERKGEKVRVSKRGENRDLDEDLER 201

Query: 554  XXXEYSVSTTDVVSLDWRKMKIPPVLSSSEQDRLFKLMQPMKAIFEVKENLHSDLNKEPA 375
               E+S S TD+ S DW+KMKIPPVLSSSE   LFKLMQPMKAIFEVKENL  DL++E  
Sbjct: 202  LVREHSQS-TDLASFDWKKMKIPPVLSSSEHTWLFKLMQPMKAIFEVKENLQKDLDRELT 260

Query: 374  EGELAAAVNMTVPQLRRHIEVGHAARNKLIKHNLRLVLFVINKYYQEIASGDKFQDLCQA 195
            +GELA+A+NM+V +L+ HIEVG AARNKLIKHNLRLVLFVINKYY EIA+  KFQDLCQA
Sbjct: 261  DGELASAMNMSVSELQWHIEVGQAARNKLIKHNLRLVLFVINKYYPEIANAQKFQDLCQA 320

Query: 194  GVKGLITAIDRFEPKRGFRLSTYGLFWIRHSIIRSMTTSSFTRVSFGIESVRQEIQKAKL 15
            G KGLITAIDRFEP+RGFRLSTYGLFWIRHSI RSMTTSSF R+ FG+ES+RQEIQKAKL
Sbjct: 321  GAKGLITAIDRFEPRRGFRLSTYGLFWIRHSINRSMTTSSFMRLPFGLESLRQEIQKAKL 380

Query: 14   EL 9
            EL
Sbjct: 381  EL 382


>ref|XP_022922776.1| RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like
            isoform X2 [Cucurbita moschata]
 ref|XP_022922777.1| RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like
            isoform X2 [Cucurbita moschata]
          Length = 509

 Score =  311 bits (797), Expect = 4e-99
 Identities = 178/348 (51%), Positives = 221/348 (63%), Gaps = 13/348 (3%)
 Frame = -2

Query: 1007 NGVRPASIVAFKTDRTKCSAVAASQEPATIPLE-----QLKQRRRPKKTNPTKAQTIKQQ 843
            + ++  SIVAFK D+   + + +  E  T+P+E     Q +  +  K     KA  I + 
Sbjct: 26   SALKRPSIVAFKVDKHTNTTLVSPHEQVTLPVESNNRNQKRTGKSSKSLKRVKAVLIDEA 85

Query: 842  P--NNELDYNEVAAALENIYKLSPAADVADAEVFD------RKRRKDLGGGENIDNIXXX 687
                +++DYNE AA LENI+KLSP  +  D E  D      ++RRK LG     D +   
Sbjct: 86   TPCTSDVDYNEAAAKLENIFKLSPVTEDTDMENEDGRPKRGQQRRKKLGK-RPCDGVVRN 144

Query: 686  XXXXXXXXXXXXXXXVEGKKRGREGEIRCGFSEKDGXXXXXXXXXXXEYSVSTTDVVSLD 507
                           ++  K G+         +KD                ++TD+VSLD
Sbjct: 145  QTKRIKRLDLDKRIALKSNKEGKSAPSLS--KQKDTKSEADEIDDLVRNYSASTDLVSLD 202

Query: 506  WRKMKIPPVLSSSEQDRLFKLMQPMKAIFEVKENLHSDLNKEPAEGELAAAVNMTVPQLR 327
            W+KMKIPPVL SSE  RLFKL+QPMKA+ + +E L   L +EP EGELA A NM V Q+R
Sbjct: 203  WKKMKIPPVLPSSEHTRLFKLVQPMKALIQAQEELQKGLGREPTEGELANATNMNVIQVR 262

Query: 326  RHIEVGHAARNKLIKHNLRLVLFVINKYYQEIASGDKFQDLCQAGVKGLITAIDRFEPKR 147
            R +EVG AARNKLIKHNLRLVLFVINKY+++ ASG KFQDLCQAGVKGLITAIDRFEPKR
Sbjct: 263  RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR 322

Query: 146  GFRLSTYGLFWIRHSIIRSMTTSSFTRVSFGIESVRQEIQKAKLELMC 3
             FRLSTY LFWIRH+IIRSMT SSFTRVSFG++SVR EIQ+AKLEL+C
Sbjct: 323  RFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLC 370


>ref|XP_022922775.1| RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like
            isoform X1 [Cucurbita moschata]
          Length = 517

 Score =  311 bits (797), Expect = 4e-99
 Identities = 178/348 (51%), Positives = 221/348 (63%), Gaps = 13/348 (3%)
 Frame = -2

Query: 1007 NGVRPASIVAFKTDRTKCSAVAASQEPATIPLE-----QLKQRRRPKKTNPTKAQTIKQQ 843
            + ++  SIVAFK D+   + + +  E  T+P+E     Q +  +  K     KA  I + 
Sbjct: 34   SALKRPSIVAFKVDKHTNTTLVSPHEQVTLPVESNNRNQKRTGKSSKSLKRVKAVLIDEA 93

Query: 842  P--NNELDYNEVAAALENIYKLSPAADVADAEVFD------RKRRKDLGGGENIDNIXXX 687
                +++DYNE AA LENI+KLSP  +  D E  D      ++RRK LG     D +   
Sbjct: 94   TPCTSDVDYNEAAAKLENIFKLSPVTEDTDMENEDGRPKRGQQRRKKLGK-RPCDGVVRN 152

Query: 686  XXXXXXXXXXXXXXXVEGKKRGREGEIRCGFSEKDGXXXXXXXXXXXEYSVSTTDVVSLD 507
                           ++  K G+         +KD                ++TD+VSLD
Sbjct: 153  QTKRIKRLDLDKRIALKSNKEGKSAPSLS--KQKDTKSEADEIDDLVRNYSASTDLVSLD 210

Query: 506  WRKMKIPPVLSSSEQDRLFKLMQPMKAIFEVKENLHSDLNKEPAEGELAAAVNMTVPQLR 327
            W+KMKIPPVL SSE  RLFKL+QPMKA+ + +E L   L +EP EGELA A NM V Q+R
Sbjct: 211  WKKMKIPPVLPSSEHTRLFKLVQPMKALIQAQEELQKGLGREPTEGELANATNMNVIQVR 270

Query: 326  RHIEVGHAARNKLIKHNLRLVLFVINKYYQEIASGDKFQDLCQAGVKGLITAIDRFEPKR 147
            R +EVG AARNKLIKHNLRLVLFVINKY+++ ASG KFQDLCQAGVKGLITAIDRFEPKR
Sbjct: 271  RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR 330

Query: 146  GFRLSTYGLFWIRHSIIRSMTTSSFTRVSFGIESVRQEIQKAKLELMC 3
             FRLSTY LFWIRH+IIRSMT SSFTRVSFG++SVR EIQ+AKLEL+C
Sbjct: 331  RFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLC 378


>ref|XP_022984454.1| RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like
            isoform X2 [Cucurbita maxima]
 ref|XP_022984455.1| RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like
            isoform X2 [Cucurbita maxima]
          Length = 509

 Score =  310 bits (795), Expect = 7e-99
 Identities = 180/344 (52%), Positives = 219/344 (63%), Gaps = 15/344 (4%)
 Frame = -2

Query: 989  SIVAFKTDRTKCSAVAASQEPATIPLEQLKQRRRPKKTNPT-------KAQTIKQQP--N 837
            SIVAFK D+   + + +  E  T+P+E     R  K+T  T       KA  I +     
Sbjct: 32   SIVAFKVDKHTNATLVSPHEQVTLPVES--NNRNQKRTGKTSKSLKRVKAVLIDEATPCT 89

Query: 836  NELDYNEVAAALENIYKLSPAADVADAEVFD------RKRRKDLGGGENIDNIXXXXXXX 675
            +++DYNE AA LENI+KLSP  +  D E  D      ++RRK LG     D +       
Sbjct: 90   SDVDYNEAAAKLENIFKLSPVTEDTDMENEDGRPKRVQQRRKKLGK-RPCDGVVRNQTKR 148

Query: 674  XXXXXXXXXXXVEGKKRGREGEIRCGFSEKDGXXXXXXXXXXXEYSVSTTDVVSLDWRKM 495
                       ++  K G+         +KD                ++TD+VSLDW+KM
Sbjct: 149  IKRLDLDRRIALKSNKEGKSAPSLS--IQKDTKSEADEIDDLVRNYSASTDLVSLDWKKM 206

Query: 494  KIPPVLSSSEQDRLFKLMQPMKAIFEVKENLHSDLNKEPAEGELAAAVNMTVPQLRRHIE 315
            KIPPVL SSE  RLFKL+QPMKA+ + +E L   L +EP EGELA A NM V Q+RR +E
Sbjct: 207  KIPPVLPSSEHTRLFKLVQPMKALIQAQEELQKGLGREPTEGELANATNMNVIQVRRQLE 266

Query: 314  VGHAARNKLIKHNLRLVLFVINKYYQEIASGDKFQDLCQAGVKGLITAIDRFEPKRGFRL 135
            VG AARNKLIKHNLRLVLFVINKY+++ ASG KFQDLCQAGVKGLITAIDRFEPKR FRL
Sbjct: 267  VGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRRFRL 326

Query: 134  STYGLFWIRHSIIRSMTTSSFTRVSFGIESVRQEIQKAKLELMC 3
            STY LFWIRH+IIRSMT SSFTRVSFG++SVR EIQ+AKLEL+C
Sbjct: 327  STYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLC 370


>ref|XP_022984453.1| RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like
            isoform X1 [Cucurbita maxima]
          Length = 517

 Score =  310 bits (795), Expect = 9e-99
 Identities = 180/344 (52%), Positives = 219/344 (63%), Gaps = 15/344 (4%)
 Frame = -2

Query: 989  SIVAFKTDRTKCSAVAASQEPATIPLEQLKQRRRPKKTNPT-------KAQTIKQQP--N 837
            SIVAFK D+   + + +  E  T+P+E     R  K+T  T       KA  I +     
Sbjct: 40   SIVAFKVDKHTNATLVSPHEQVTLPVES--NNRNQKRTGKTSKSLKRVKAVLIDEATPCT 97

Query: 836  NELDYNEVAAALENIYKLSPAADVADAEVFD------RKRRKDLGGGENIDNIXXXXXXX 675
            +++DYNE AA LENI+KLSP  +  D E  D      ++RRK LG     D +       
Sbjct: 98   SDVDYNEAAAKLENIFKLSPVTEDTDMENEDGRPKRVQQRRKKLGK-RPCDGVVRNQTKR 156

Query: 674  XXXXXXXXXXXVEGKKRGREGEIRCGFSEKDGXXXXXXXXXXXEYSVSTTDVVSLDWRKM 495
                       ++  K G+         +KD                ++TD+VSLDW+KM
Sbjct: 157  IKRLDLDRRIALKSNKEGKSAPSLS--IQKDTKSEADEIDDLVRNYSASTDLVSLDWKKM 214

Query: 494  KIPPVLSSSEQDRLFKLMQPMKAIFEVKENLHSDLNKEPAEGELAAAVNMTVPQLRRHIE 315
            KIPPVL SSE  RLFKL+QPMKA+ + +E L   L +EP EGELA A NM V Q+RR +E
Sbjct: 215  KIPPVLPSSEHTRLFKLVQPMKALIQAQEELQKGLGREPTEGELANATNMNVIQVRRQLE 274

Query: 314  VGHAARNKLIKHNLRLVLFVINKYYQEIASGDKFQDLCQAGVKGLITAIDRFEPKRGFRL 135
            VG AARNKLIKHNLRLVLFVINKY+++ ASG KFQDLCQAGVKGLITAIDRFEPKR FRL
Sbjct: 275  VGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRRFRL 334

Query: 134  STYGLFWIRHSIIRSMTTSSFTRVSFGIESVRQEIQKAKLELMC 3
            STY LFWIRH+IIRSMT SSFTRVSFG++SVR EIQ+AKLEL+C
Sbjct: 335  STYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLC 378


>ref|XP_023552213.1| RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like
            [Cucurbita pepo subsp. pepo]
 ref|XP_023552214.1| RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like
            [Cucurbita pepo subsp. pepo]
          Length = 509

 Score =  310 bits (793), Expect = 1e-98
 Identities = 180/348 (51%), Positives = 220/348 (63%), Gaps = 13/348 (3%)
 Frame = -2

Query: 1007 NGVRPASIVAFKTDRTKCSAVAASQEPATIPLE-----QLKQRRRPKKTNPTKAQTIKQQ 843
            + ++  SIVAFK D+   + + +  E  T+P+E     Q +  +  K     KA  I + 
Sbjct: 26   SALKRPSIVAFKVDKHTNTTLVSPHEQVTLPVESNNRNQKRTGKSSKSLKRVKAVLIDEA 85

Query: 842  P--NNELDYNEVAAALENIYKLSPAADVADAEVFD------RKRRKDLGGGENIDNIXXX 687
                +++DYNE AA LENI+KLSP  +  D E  D      ++RRK LG     D +   
Sbjct: 86   TPCTSDVDYNEAAAKLENIFKLSPVTEDTDMENEDGRPKRGQQRRKKLGK-RPCDGVVRN 144

Query: 686  XXXXXXXXXXXXXXXVEGKKRGREGEIRCGFSEKDGXXXXXXXXXXXEYSVSTTDVVSLD 507
                           ++  K G+         E               YS ST D+VSLD
Sbjct: 145  QTKRIKRLDLDKRIALKSNKEGKSAPSLSKQKETKSEADEIDDLVRN-YSAST-DLVSLD 202

Query: 506  WRKMKIPPVLSSSEQDRLFKLMQPMKAIFEVKENLHSDLNKEPAEGELAAAVNMTVPQLR 327
            W+KMKIPPVL SSE  RLFKL+QPMKA+ + +E L   L +EP EGELA A NM V Q+R
Sbjct: 203  WKKMKIPPVLPSSEHTRLFKLVQPMKALIQAQEELQKGLGREPTEGELANATNMNVIQVR 262

Query: 326  RHIEVGHAARNKLIKHNLRLVLFVINKYYQEIASGDKFQDLCQAGVKGLITAIDRFEPKR 147
            R +EVG AARNKLIKHNLRLVLFVINKY+++ ASG KFQDLCQAGVKGLITAIDRFEPKR
Sbjct: 263  RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR 322

Query: 146  GFRLSTYGLFWIRHSIIRSMTTSSFTRVSFGIESVRQEIQKAKLELMC 3
             FRLSTY LFWIRH+IIRSMT SSFTRVSFG++SVR EIQ+AKLEL+C
Sbjct: 323  RFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLC 370


>gb|PON96872.1| RNA polymerase sigma factor [Trema orientalis]
          Length = 539

 Score =  308 bits (788), Expect = 2e-97
 Identities = 186/381 (48%), Positives = 233/381 (61%), Gaps = 40/381 (10%)
 Frame = -2

Query: 1028 SRHRPSPNGVRPASIVAFKTDRTKCSAVAASQEPATIPLEQLKQ-----RRRPKKTNPTK 864
            S HR +   ++   I+AFK D++  +++ A  EP  +P+E  K+     R+  K +N  K
Sbjct: 22   SSHRST---LKKPFILAFKADKSNKTSLVAPHEPIILPVETCKEIKNRVRKAKKASNRVK 78

Query: 863  AQTIKQQPNN--ELDYNEVAAALENIYKLSPA---ADVADAEVF----DRKRRKDLGGGE 711
            A    +   +  E+DYNE AA LE+IYKLSPA   +DV +A        R+R K + G E
Sbjct: 79   AAVTDEASTSTMEVDYNEAAAKLESIYKLSPATESSDVDEATGLMSRGRRRRGKVIEGDE 138

Query: 710  N---------IDNIXXXXXXXXXXXXXXXXXXVEGK-----------------KRGREGE 609
                      I +                    E K                 K  +E  
Sbjct: 139  RTGKKPSDIVIRSRTKKAKRLSLDKRIALKRNKEDKESVSIRKSKDSENEKNEKNEKEKR 198

Query: 608  IRCGFSEKDGXXXXXXXXXXXEYSVSTTDVVSLDWRKMKIPPVLSSSEQDRLFKLMQPMK 429
            +     +KD                ++TD++SLDW+KMKIPPVL SSE   LFKLMQP K
Sbjct: 199  VVLVRKKKDSENENEKIDKLVREYSASTDLISLDWKKMKIPPVLPSSEHTWLFKLMQPFK 258

Query: 428  AIFEVKENLHSDLNKEPAEGELAAAVNMTVPQLRRHIEVGHAARNKLIKHNLRLVLFVIN 249
             + +VK+NL +DL +EP EGELA A NM+V Q+++H+EVG AARNKLIKHNLRLVLFV+N
Sbjct: 259  ELRQVKDNLQNDLGREPTEGELAKATNMSVAQVKKHLEVGRAARNKLIKHNLRLVLFVMN 318

Query: 248  KYYQEIASGDKFQDLCQAGVKGLITAIDRFEPKRGFRLSTYGLFWIRHSIIRSMTTSSFT 69
            KY+Q+ A+G KFQDLCQAGVKGLITAIDRFEPKR FRLSTYGLFWIRH+IIRSMT SSFT
Sbjct: 319  KYFQDFANGPKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFT 378

Query: 68   RVSFGIESVRQEIQKAKLELM 6
            RVSFG+ESVR EIQKAKLELM
Sbjct: 379  RVSFGLESVRVEIQKAKLELM 399


>ref|XP_016737339.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Gossypium hirsutum]
          Length = 516

 Score =  307 bits (786), Expect = 2e-97
 Identities = 175/348 (50%), Positives = 221/348 (63%), Gaps = 17/348 (4%)
 Frame = -2

Query: 998  RPASIVAFKTDRTKCSAVAASQEPATIPLEQLKQRRRPKKTNPTKAQTIKQQPNNE---- 831
            R   IVAFK D++  +A+   ++   +P+E  K+  + +      ++T+ +   +E    
Sbjct: 29   RRPCIVAFKADKSNNTALVTLRDHNLLPVETAKEHPKRRGKAKKASKTVNRDFTDEGSPY 88

Query: 830  ---LDYNEVAAALENIYKLSPAADVADAEVFD---------RKRRKDLGG-GENIDNIXX 690
               +DYNE AA LENIYKLSP+    D +  +         RKR K+  G  +N D+   
Sbjct: 89   TVDVDYNEAAAKLENIYKLSPSTQTFDEKGSEGETKGRQLRRKRSKESDGKADNGDDKIV 148

Query: 689  XXXXXXXXXXXXXXXXVEGKKRGREGEIRCGFSEKDGXXXXXXXXXXXEYSVSTTDVVSL 510
                            +E KK   E  +  G S+K                 ++TD+VSL
Sbjct: 149  VRSQTKKNRRLGLDKRIELKKNREEKSVVSGQSKKGISNESEKIDRLVRDYSASTDLVSL 208

Query: 509  DWRKMKIPPVLSSSEQDRLFKLMQPMKAIFEVKENLHSDLNKEPAEGELAAAVNMTVPQL 330
            DW+KMKIPPVL S+E   LFKLMQPMKA+ E KENL  DL ++P E ELA A N +  Q+
Sbjct: 209  DWKKMKIPPVLPSTEHTWLFKLMQPMKALLEAKENLQKDLGRDPTEDELAEATNSSAAQV 268

Query: 329  RRHIEVGHAARNKLIKHNLRLVLFVINKYYQEIASGDKFQDLCQAGVKGLITAIDRFEPK 150
            RR +EVG AARNKLIKHNLRLVLFVI KY+Q+ A+G +FQDLCQAGVKGLITAIDRFEP+
Sbjct: 269  RRQLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPR 328

Query: 149  RGFRLSTYGLFWIRHSIIRSMTTSSFTRVSFGIESVRQEIQKAKLELM 6
            R FRLSTYGLFWIRH+IIRSMT SSFTRVSFG+ESVR EIQ+AKLEL+
Sbjct: 329  RRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFGLESVRVEIQRAKLELL 376


>ref|XP_012440029.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Gossypium raimondii]
 ref|XP_012440030.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Gossypium raimondii]
 gb|KJB52623.1| hypothetical protein B456_008G270500 [Gossypium raimondii]
 gb|KJB52624.1| hypothetical protein B456_008G270500 [Gossypium raimondii]
          Length = 516

 Score =  306 bits (783), Expect = 5e-97
 Identities = 174/348 (50%), Positives = 221/348 (63%), Gaps = 17/348 (4%)
 Frame = -2

Query: 998  RPASIVAFKTDRTKCSAVAASQEPATIPLEQLKQRRRPKKTNPTKAQTIKQQPNNE---- 831
            R   IVAFK D++  +A+   ++   +P+E  K+  + +      ++T+ +   +E    
Sbjct: 29   RRPCIVAFKADKSNNTALVTLRDHNLLPVETAKEHPKRRGKAKKASKTVNRDFTDEGSPY 88

Query: 830  ---LDYNEVAAALENIYKLSPAADVADAEVFD---------RKRRKDLGG-GENIDNIXX 690
               +DYNE AA LENIYKLSP+    D +  +         RKR K+  G  +N D+   
Sbjct: 89   TVDVDYNEAAAKLENIYKLSPSTQTFDEKGSEGETKGRQLRRKRSKESDGKADNGDDKIV 148

Query: 689  XXXXXXXXXXXXXXXXVEGKKRGREGEIRCGFSEKDGXXXXXXXXXXXEYSVSTTDVVSL 510
                            +E KK   E  +  G S+K                 ++TD+VSL
Sbjct: 149  VRSQTKKNRRLGLDKRIELKKNREEKSVVSGQSKKGISNESEKIDRLVRDYSASTDLVSL 208

Query: 509  DWRKMKIPPVLSSSEQDRLFKLMQPMKAIFEVKENLHSDLNKEPAEGELAAAVNMTVPQL 330
            DW+KMK+PPVL S+E   LFKLMQPMKA+ E KENL  DL ++P E ELA A N +  Q+
Sbjct: 209  DWKKMKMPPVLPSTEHTWLFKLMQPMKALLEAKENLQKDLGRDPTEDELAEATNSSAAQV 268

Query: 329  RRHIEVGHAARNKLIKHNLRLVLFVINKYYQEIASGDKFQDLCQAGVKGLITAIDRFEPK 150
            RR +EVG AARNKLIKHNLRLVLFVI KY+Q+ A+G +FQDLCQAGVKGLITAIDRFEP+
Sbjct: 269  RRQLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPR 328

Query: 149  RGFRLSTYGLFWIRHSIIRSMTTSSFTRVSFGIESVRQEIQKAKLELM 6
            R FRLSTYGLFWIRH+IIRSMT SSFTRVSFG+ESVR EIQ+AKLEL+
Sbjct: 329  RRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFGLESVRVEIQRAKLELL 376


>ref|XP_017636101.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Gossypium arboreum]
 gb|KHG11410.1| RNA polymerase sigma factor rpoD [Gossypium arboreum]
          Length = 516

 Score =  306 bits (783), Expect = 5e-97
 Identities = 174/348 (50%), Positives = 221/348 (63%), Gaps = 17/348 (4%)
 Frame = -2

Query: 998  RPASIVAFKTDRTKCSAVAASQEPATIPLEQLKQRRRPKKTNPTKAQTIKQQPNNE---- 831
            R   I+AFK D++  +A+   ++   +P+E  K+  + +      ++T+ +   +E    
Sbjct: 29   RRPCIMAFKADKSNNTALVTLRDHNLLPVETAKEHPKRRGKAKKASKTVNRDFTDEGSPY 88

Query: 830  ---LDYNEVAAALENIYKLSPAADVADAEVFD---------RKRRKDLGG-GENIDNIXX 690
               +DYNE AA LENIYKLSP+    D +  +         RKR  +  G  +N D+   
Sbjct: 89   TVDVDYNEAAAKLENIYKLSPSTQTFDEKGSEGETKGRHLRRKRSTESDGKADNGDDKIV 148

Query: 689  XXXXXXXXXXXXXXXXVEGKKRGREGEIRCGFSEKDGXXXXXXXXXXXEYSVSTTDVVSL 510
                            +E KK   E  +  G S+K                 ++TD+VSL
Sbjct: 149  VRSQTKKNRRLGLDKRIELKKNREEKSVVSGQSKKGISNESEKIDRLVRDYSASTDLVSL 208

Query: 509  DWRKMKIPPVLSSSEQDRLFKLMQPMKAIFEVKENLHSDLNKEPAEGELAAAVNMTVPQL 330
            DW+KMKIPPVL S+E   LFKLMQPMKA+ E KENL  DL ++P E ELA A N +  Q+
Sbjct: 209  DWKKMKIPPVLPSTEHTWLFKLMQPMKALLEAKENLQKDLGRDPTEDELAEATNSSAAQV 268

Query: 329  RRHIEVGHAARNKLIKHNLRLVLFVINKYYQEIASGDKFQDLCQAGVKGLITAIDRFEPK 150
            RR +EVG AARNKLIKHNLRLVLFVINKY+Q+ A+G +FQDLCQAGVKGLITAIDRFEP+
Sbjct: 269  RRQLEVGRAARNKLIKHNLRLVLFVINKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPR 328

Query: 149  RGFRLSTYGLFWIRHSIIRSMTTSSFTRVSFGIESVRQEIQKAKLELM 6
            R FRLSTYGLFWIRH+IIRSMT SSFTRVSFG+ESVR EIQ+AKLEL+
Sbjct: 329  RRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFGLESVRVEIQRAKLELL 376


>gb|ANW72278.1| RNA polymerase sigma factor sigE [Tradescantia hirsutiflora]
          Length = 484

 Score =  304 bits (779), Expect = 9e-97
 Identities = 180/336 (53%), Positives = 221/336 (65%), Gaps = 19/336 (5%)
 Frame = -2

Query: 959 KCSA-VAASQEPATIPLEQLKQRRRPKKTNPTKAQTIKQQPNN--ELDYNEVAAALENIY 789
           KCSA V  S EPA   L++  ++RR +    +K      +PN+  ELDYNEVAA LENIY
Sbjct: 41  KCSALVTTSPEPAPETLKKESKKRRARIGKKSK------EPNSVQELDYNEVAATLENIY 94

Query: 788 KLS--PAADVADAEVFDRKRRKDLGGGENIDNIXXXXXXXXXXXXXXXXXXVEGKKRGRE 615
           KLS     +V   ++  R++++ +                             GK+RG+ 
Sbjct: 95  KLSLTEVLEVEKEKIGKRQKKRVV--------------------------VRNGKRRGKR 128

Query: 614 ---------GEIRCGFSE-----KDGXXXXXXXXXXXEYSVSTTDVVSLDWRKMKIPPVL 477
                     E + G  E     K+              S +TTD+   DW+KM+IPPVL
Sbjct: 129 LSLEKRIKLKESKVGEGEDVDERKEEEERKLERLVREYSSTTTTDLNGTDWKKMRIPPVL 188

Query: 476 SSSEQDRLFKLMQPMKAIFEVKENLHSDLNKEPAEGELAAAVNMTVPQLRRHIEVGHAAR 297
            S E   LF+LMQPMKA+ E+KE+L+ DL++EPA+ ELAAAVNM+V ++RRHIEVG AAR
Sbjct: 189 GSVEHRWLFRLMQPMKAVLEMKESLNKDLSREPADCELAAAVNMSVIEMRRHIEVGQAAR 248

Query: 296 NKLIKHNLRLVLFVINKYYQEIASGDKFQDLCQAGVKGLITAIDRFEPKRGFRLSTYGLF 117
           NKLIKHNLRLVLFV+NKY+ E+++G KFQDLCQAGVKGLITAIDRFEPKRGFRLSTYGLF
Sbjct: 249 NKLIKHNLRLVLFVMNKYHSELSNGQKFQDLCQAGVKGLITAIDRFEPKRGFRLSTYGLF 308

Query: 116 WIRHSIIRSMTTSSFTRVSFGIESVRQEIQKAKLEL 9
           WIRHSIIRSMT SSFT+V FGIESVRQEIQKAKLEL
Sbjct: 309 WIRHSIIRSMTLSSFTKVPFGIESVRQEIQKAKLEL 344