BLASTX nr result
ID: Ophiopogon23_contig00011280
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon23_contig00011280
(963 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PPD88818.1| hypothetical protein GOBAR_DD14224 [Gossypium bar... 210 1e-58
gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposo... 193 4e-57
gb|ABD63105.1| polyprotein-like, related [Asparagus officinalis] 194 8e-57
gb|PHT53674.1| hypothetical protein CQW23_08136 [Capsicum baccatum] 189 3e-54
gb|KYP58145.1| Retrovirus-related Pol polyprotein from transposo... 184 4e-53
gb|PHT55765.1| hypothetical protein CQW23_04251 [Capsicum baccatum] 172 4e-49
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar... 173 6e-47
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar... 173 6e-47
gb|KHN13665.1| Retrovirus-related Pol polyprotein from transposo... 159 1e-42
gb|KJB48829.1| hypothetical protein B456_008G089200 [Gossypium r... 151 7e-42
gb|EOY09126.1| Uncharacterized protein TCM_024518 [Theobroma cacao] 152 1e-40
gb|KYP36635.1| Retrovirus-related Pol polyprotein from transposo... 155 1e-40
gb|KYP37021.1| Retrovirus-related Pol polyprotein from transposo... 152 6e-40
gb|EOY22705.1| Transducin/WD40 repeat-like superfamily protein [... 147 2e-39
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711... 155 3e-38
gb|KYP64673.1| Retrovirus-related Pol polyprotein from transposo... 148 4e-38
gb|PNX71218.1| putative retrotransposon Ty1-copia subclass prote... 141 3e-37
dbj|GAU44261.1| hypothetical protein TSUD_400070 [Trifolium subt... 149 8e-37
gb|OMO83367.1| Integrase, catalytic core [Corchorus capsularis] 149 1e-36
gb|KYP67041.1| Retrovirus-related Pol polyprotein from transposo... 142 3e-36
>gb|PPD88818.1| hypothetical protein GOBAR_DD14224 [Gossypium barbadense]
Length = 718
Score = 210 bits (534), Expect = 1e-58
Identities = 110/268 (41%), Positives = 163/268 (60%)
Frame = -3
Query: 805 PSDMKDADWEELDDKALTAIQLCLADEVLDQVINEKTAASLWSRLQDHYLKKSLANRIIL 626
P ++ +WEELD+KAL+AIQLCL + VL V+ EKT+ +LW RL+ Y KSLANR++L
Sbjct: 311 PENLNQTEWEELDEKALSAIQLCLTNTVLQDVLMEKTSFALWKRLETLYATKSLANRLVL 370
Query: 625 KQRLFLLRMQEGAPVNSHIAEFTSIINELDKIEVKIEDEDQALLLLCSLPSTYKSFRDAI 446
KQRLF RM EG + HI++F +++N+L +EV I+DEDQA+LLLCSLPS+YKSF++ +
Sbjct: 371 KQRLFTFRMNEGELLKDHISQFITLLNDLKNVEVHIDDEDQAMLLLCSLPSSYKSFKETL 430
Query: 445 IYGGKESLKINEVREHLLNKDKIDKQLTGSPNGDDSSALYAKEKKGKQRSSTNSEVKSCS 266
IY GK+ L +V+ HLL++DK+D + + D +++ KK ++R C
Sbjct: 431 IY-GKDKLSFEDVKGHLLSRDKLDNEFDLNSKADRQASVLVASKKREKR---------CR 480
Query: 265 FCKRTGHVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXETHVADLVGDEEVVCSVTDSLVS 86
+CK+ GHV+ ++ D GD+ ++ S +D+
Sbjct: 481 YCKKLGHVK--------ADYYKLRNKRAAESNEEDVVGANLVDEGGDDFLLVSTSDN-SK 531
Query: 85 NDDDWIVDSGCSKHISPKAETFSTYTSV 2
+WI+DSGCS H+ P E FSTY+SV
Sbjct: 532 LTSEWILDSGCSFHMYPNREWFSTYSSV 559
>gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 690
Score = 193 bits (490), Expect(2) = 4e-57
Identities = 105/275 (38%), Positives = 159/275 (57%), Gaps = 7/275 (2%)
Frame = -3
Query: 805 PSDMKDADWEELDDKALTAIQLCLADEVLDQVINEKTAASLWSRLQDHYLKKSLANRIIL 626
P +M D W+ELD+KAL+AIQLCL+ EVL +V NE TAA+LW +L+ Y+ KSLAN++ L
Sbjct: 45 PVNMTDEQWDELDEKALSAIQLCLSKEVLREVANETTAAALWLKLESLYMTKSLANKLRL 104
Query: 625 KQRLFLLRMQEGAPVNSHIAEFTSIINELDKIEVKIEDEDQALLLLCSLPSTYKSFRDAI 446
K+RL+ +RM EG P+ SH+ EF SII +L+ IE+KI+DED+A+LL+ SLPSTYK F++ +
Sbjct: 105 KERLYTIRMVEGTPIQSHLNEFNSIIMDLENIEIKIDDEDKAVLLIVSLPSTYKHFKEIM 164
Query: 445 IYGGKESLKINEVREHLLNKDKIDKQLTGSPNGDDSSALYAKEKKG-------KQRSSTN 287
+Y ++L +V+ +LL+K+K D + G+ S ++KG + +S
Sbjct: 165 LYSNNDTLSFEDVKSNLLSKEKFDLDIHSEDKGEGLSVRGRTQEKGSTSNKKSRSKSRGR 224
Query: 286 SEVKSCSFCKRTGHVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXETHVADLVGDEEVVCS 107
K+C +CK+ GH E + D +V+ S
Sbjct: 225 KSNKTCRYCKKFGH--------DISDCFILKKKQERQEKGKNPAEAANVETDSDGDVMIS 276
Query: 106 VTDSLVSNDDDWIVDSGCSKHISPKAETFSTYTSV 2
V+ S +WI+DSGC+ H+ P + F+T V
Sbjct: 277 VSSDKRSK-TEWILDSGCTFHMCPYKDLFTTLEPV 310
Score = 58.2 bits (139), Expect(2) = 4e-57
Identities = 28/40 (70%), Positives = 33/40 (82%)
Frame = -2
Query: 926 MSTAIKFDIQKFDGVINFSRWQVRMNAILTQHGLKKALLG 807
MST KFDI+KFDG I FS W+V+M A+LTQ+GLKKAL G
Sbjct: 1 MSTVTKFDIEKFDGKICFSIWKVQMKAVLTQNGLKKALDG 40
>gb|ABD63105.1| polyprotein-like, related [Asparagus officinalis]
Length = 289
Score = 194 bits (494), Expect = 8e-57
Identities = 98/193 (50%), Positives = 135/193 (69%), Gaps = 6/193 (3%)
Frame = -3
Query: 805 PSDMKDADWEELDDKALTAIQLCLADEVLDQVINEKTAASLWSRLQDHYLKKSLANRIIL 626
P M + DW +L+D+ALT IQLCL +EV+ +V+ EKT A LWS+L+D YL KSL NR++L
Sbjct: 37 PVTMTEEDWNQLEDRALTTIQLCLTNEVMQEVLTEKTTADLWSKLEDLYLMKSLTNRLLL 96
Query: 625 KQRLFLLRMQEGAPVNSHIAEFTSIINELDKIEVKIEDEDQALLLLCSLPSTYKSFRDAI 446
KQRL+ L M EG P+ SHI EF S+I L KI+VKI DEDQALLLLCSL +YK FRD +
Sbjct: 97 KQRLYTLWMSEGTPIKSHIGEFNSVITYLSKIDVKINDEDQALLLLCSLLPSYKHFRDTM 156
Query: 445 IYGGKESLKINEVREHLLNKDKIDKQLTGSPNGDDSSALYAKEKKGKQRSSTNSEVKS-- 272
IY G++S+ I + +E+LLN +KI+K+LT S +GD + L+ + + ++R + KS
Sbjct: 157 IY-GRDSIGIKDAKENLLNTEKINKELTTSESGDKADGLFVR-GRSEERDFGGNMYKSKH 214
Query: 271 ----CSFCKRTGH 245
C +CK+ H
Sbjct: 215 RNLTCRYCKKKEH 227
>gb|PHT53674.1| hypothetical protein CQW23_08136 [Capsicum baccatum]
Length = 707
Score = 189 bits (481), Expect(2) = 3e-54
Identities = 101/271 (37%), Positives = 154/271 (56%), Gaps = 4/271 (1%)
Frame = -3
Query: 805 PSDMKDADWEELDDKALTAIQLCLADEVLDQVINEKTAASLWSRLQDHYLKKSLANRIIL 626
P+ + WEE D+KAL+ IQLCL+ EVL +VINEKTAA +WS+L+ Y+ KSLAN++ L
Sbjct: 43 PATTTEEQWEETDEKALSTIQLCLSREVLREVINEKTAAGIWSKLESLYMTKSLANKLRL 102
Query: 625 KQRLFLLRMQEGAPVNSHIAEFTSIINELDKIEVKIEDEDQALLLLCSLPSTYKSFRDAI 446
K+RLF LRM EG P+ SH+ EF SII +L+ ++V+I+DED+A+LL+ SLP +Y+ F++ +
Sbjct: 103 KERLFTLRMSEGTPIQSHLGEFNSIIIDLENLDVEIDDEDKAVLLIVSLPPSYRHFKEIM 162
Query: 445 IYGGKESLKINEVREHLLNKDKIDKQLTGSPNGDDSSALYAKEKKG----KQRSSTNSEV 278
+YG +L ++V+ +LL+K+K D Q+ +G+ + G Q S
Sbjct: 163 LYGNNVTLSFDDVKSNLLSKEKFDTQIHSESSGEGLVVRGRNHEVGASGKNQSKSKGKNS 222
Query: 277 KSCSFCKRTGHVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXETHVADLVGDEEVVCSVTD 98
K C +CK+ H + V E + S T+
Sbjct: 223 KYCRYCKKRNH----EISECYKLKNKQNREDKGKQPEKSAEASFVETESDGECFIASGTE 278
Query: 97 SLVSNDDDWIVDSGCSKHISPKAETFSTYTS 5
N +W++DSGC+ H+SP + F+TY S
Sbjct: 279 QRSKN--EWVLDSGCTFHMSPNRDWFTTYES 307
Score = 52.0 bits (123), Expect(2) = 3e-54
Identities = 26/40 (65%), Positives = 33/40 (82%)
Frame = -2
Query: 926 MSTAIKFDIQKFDGVINFSRWQVRMNAILTQHGLKKALLG 807
MST KFDI+KFDG I+F+ W+V+M A+LTQ+GLKK L G
Sbjct: 1 MST--KFDIEKFDGKISFAIWRVQMLAVLTQNGLKKVLSG 38
>gb|KYP58145.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 262
Score = 184 bits (467), Expect = 4e-53
Identities = 88/194 (45%), Positives = 132/194 (68%), Gaps = 7/194 (3%)
Frame = -3
Query: 805 PSDMKDADWEELDDKALTAIQLCLADEVLDQVINEKTAASLWSRLQDHYLKKSLANRIIL 626
P +M D W+ELD+KAL+AIQLCL+ EVL +V NE TAA+LW +L+ Y+ KSLAN++ L
Sbjct: 21 PVNMTDEQWDELDEKALSAIQLCLSKEVLREVANETTAAALWLKLESLYMTKSLANKLRL 80
Query: 625 KQRLFLLRMQEGAPVNSHIAEFTSIINELDKIEVKIEDEDQALLLLCSLPSTYKSFRDAI 446
K+RL+ +RM EG P+ SH+ EF SII +L+ IE+KI+DED+A+LL+ SLPSTYK F++ +
Sbjct: 81 KERLYTIRMVEGTPIQSHLNEFNSIIMDLENIEIKIDDEDKAVLLIVSLPSTYKHFKEIM 140
Query: 445 IYGGKESLKINEVREHLLNKDKIDKQLTGSPNGDDSSALYAKEKKG-------KQRSSTN 287
+Y ++L +V+ +LL+K+K D + G+ S ++KG + +S
Sbjct: 141 LYSNNDTLSFEDVKSNLLSKEKFDLDIHSEDKGEGLSVRGRTQEKGSTSNKKSRSKSRRR 200
Query: 286 SEVKSCSFCKRTGH 245
K+C +CK+ GH
Sbjct: 201 KTNKTCRYCKKFGH 214
>gb|PHT55765.1| hypothetical protein CQW23_04251 [Capsicum baccatum]
Length = 553
Score = 172 bits (436), Expect(2) = 4e-49
Identities = 83/182 (45%), Positives = 127/182 (69%)
Frame = -3
Query: 805 PSDMKDADWEELDDKALTAIQLCLADEVLDQVINEKTAASLWSRLQDHYLKKSLANRIIL 626
P+ + WEE+D+KAL+ IQLCL+ EVL +VINEKTAA +WS+L+ Y+ KSLAN++ L
Sbjct: 43 PATTTEEQWEEMDEKALSIIQLCLSREVLREVINEKTAAGIWSKLESLYMTKSLANKLRL 102
Query: 625 KQRLFLLRMQEGAPVNSHIAEFTSIINELDKIEVKIEDEDQALLLLCSLPSTYKSFRDAI 446
K+RLF LRM EG P+ SH+ EF SII +L+ ++V+I+DED+A+LL+ SLP +Y+ F+ +
Sbjct: 103 KERLFTLRMSEGTPIQSHLGEFNSIIIDLENLDVEIDDEDKAVLLIVSLPPSYRHFKKIM 162
Query: 445 IYGGKESLKINEVREHLLNKDKIDKQLTGSPNGDDSSALYAKEKKGKQRSSTNSEVKSCS 266
+YG +L ++V+ +LL+K+K D Q+ +G+ L K + K +S ++ KS
Sbjct: 163 LYGNNVTLSFDDVKSNLLSKEKFDTQIHSESSGE---GLVVKWRNHKVGASGKNQSKSRG 219
Query: 265 FC 260
C
Sbjct: 220 LC 221
Score = 52.4 bits (124), Expect(2) = 4e-49
Identities = 23/37 (62%), Positives = 32/37 (86%)
Frame = -2
Query: 917 AIKFDIQKFDGVINFSRWQVRMNAILTQHGLKKALLG 807
++KFDI+KFDG I+F+ W+V+M A+LTQ+GLKK L G
Sbjct: 2 SMKFDIEKFDGKISFAIWRVQMLAVLTQNGLKKVLSG 38
>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
Length = 2351
Score = 173 bits (438), Expect(2) = 6e-47
Identities = 100/274 (36%), Positives = 157/274 (57%), Gaps = 9/274 (3%)
Frame = -3
Query: 805 PSDMKDADWEELDDKALTAIQLCLADEVLDQVINEKTAASLWSRLQDHYLKKSLANRIIL 626
PS + + +++ ++A +AI LCL DEVL +V +EKTA+ LW RL+ Y+ KSL NR+ L
Sbjct: 547 PSTLSEEQKDDMLERAHSAILLCLGDEVLREVADEKTASGLWLRLESKYMTKSLTNRLYL 606
Query: 625 KQRLFLLRMQEGAPVNSHIAEFTSIINELDKIEVKIEDEDQALLLLCSLPSTYKSFRDAI 446
KQRL+ L+M+EG PV+ H+ +F SII +L+ I+ KI+DEDQA+++LCSLP +Y++F D +
Sbjct: 607 KQRLYALKMEEGTPVSQHLDKFNSIIMDLNNIDNKIDDEDQAIIVLCSLPPSYENFVDTM 666
Query: 445 IYGGKESLKINEVREHLLNKDKIDKQLTGS--PNGDDSSALYAKEKKGKQRSSTNSEVKS 272
+Y G++ L + EV+ + L+ ++ K++TG N + + K K SS+ S +S
Sbjct: 667 MY-GRDDLTLEEVK-NALSSSELRKKITGKVVENNEGEGLVARGRSKAKGGSSSKSHPRS 724
Query: 271 -------CSFCKRTGHVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXETHVADLVGDEEVV 113
C +CK+ GH++ AD D E+V
Sbjct: 725 QSKKRIQCYYCKKYGHMKVDCPKRKEKSESQEQQNDRANVAD--------ADSSSDAEIV 776
Query: 112 CSVTDSLVSNDDDWIVDSGCSKHISPKAETFSTY 11
+V+DS WI+D+G + HIS + FSTY
Sbjct: 777 LAVSDSYAGG--RWILDTGATFHISTSKDAFSTY 808
Score = 44.3 bits (103), Expect(2) = 6e-47
Identities = 18/38 (47%), Positives = 28/38 (73%)
Frame = -2
Query: 920 TAIKFDIQKFDGVINFSRWQVRMNAILTQHGLKKALLG 807
++ K+D++KF G +FS W+++M A+L Q GL KAL G
Sbjct: 505 SSTKYDVEKFTGKNSFSLWRIKMRAVLVQQGLLKALSG 542
>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
Length = 1841
Score = 173 bits (438), Expect(2) = 6e-47
Identities = 100/274 (36%), Positives = 157/274 (57%), Gaps = 9/274 (3%)
Frame = -3
Query: 805 PSDMKDADWEELDDKALTAIQLCLADEVLDQVINEKTAASLWSRLQDHYLKKSLANRIIL 626
PS + + +++ ++A +AI LCL DEVL +V +EKTA+ LW RL+ Y+ KSL NR+ L
Sbjct: 568 PSTLSEEQKDDMLERAHSAILLCLGDEVLREVADEKTASGLWLRLESKYMTKSLTNRLYL 627
Query: 625 KQRLFLLRMQEGAPVNSHIAEFTSIINELDKIEVKIEDEDQALLLLCSLPSTYKSFRDAI 446
KQRL+ L+M+EG PV+ H+ +F SII +L+ I+ KI+DEDQA+++LCSLP +Y++F D +
Sbjct: 628 KQRLYALKMEEGTPVSQHLDKFNSIIMDLNNIDNKIDDEDQAIIVLCSLPPSYENFVDTM 687
Query: 445 IYGGKESLKINEVREHLLNKDKIDKQLTGS--PNGDDSSALYAKEKKGKQRSSTNSEVKS 272
+Y G++ L + EV+ + L+ ++ K++TG N + + K K SS+ S +S
Sbjct: 688 MY-GRDDLTLEEVK-NALSSSELRKKITGKVVENNEGEGLVARGRSKAKGGSSSKSHPRS 745
Query: 271 -------CSFCKRTGHVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXETHVADLVGDEEVV 113
C +CK+ GH++ AD D E+V
Sbjct: 746 QSKKRIQCYYCKKYGHMKVDCPKRKEKSESQEQQNDRANVAD--------ADSSSDAEIV 797
Query: 112 CSVTDSLVSNDDDWIVDSGCSKHISPKAETFSTY 11
+V+DS WI+D+G + HIS + FSTY
Sbjct: 798 LAVSDSYAGG--RWILDTGATFHISTSKDAFSTY 829
Score = 44.3 bits (103), Expect(2) = 6e-47
Identities = 18/38 (47%), Positives = 28/38 (73%)
Frame = -2
Query: 920 TAIKFDIQKFDGVINFSRWQVRMNAILTQHGLKKALLG 807
++ K+D++KF G +FS W+++M A+L Q GL KAL G
Sbjct: 526 SSTKYDVEKFTGKNSFSLWRIKMRAVLVQQGLLKALSG 563
>gb|KHN13665.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Glycine soja]
Length = 337
Score = 159 bits (402), Expect = 1e-42
Identities = 93/276 (33%), Positives = 154/276 (55%), Gaps = 8/276 (2%)
Frame = -3
Query: 805 PSDMKDADWEELDDKALTAIQLCLADEVLDQVINEKTAASLWSRLQDHYLKKSLANRIIL 626
PS + D + ++L KA + I L L DEVL +V EK+AA +W +L+ Y+ KSL N++ L
Sbjct: 43 PSTLSDKEKKDLLSKAHSTIILSLGDEVLREVAEEKSAAGIWLKLESLYMTKSLTNKLYL 102
Query: 625 KQRLFLLRMQEGAPVNSHIAEFTSIINELDKIEVKIEDEDQALLLLCSLPSTYKSFRDAI 446
K+RL L+M+EG+ + H++ FT + +L ++V+I++EDQA++LLCSLPS++++ D +
Sbjct: 103 KKRLHQLKMEEGSSIKEHVSLFTKAVLDLKSVDVRIDEEDQAVMLLCSLPSSFENLVDTM 162
Query: 445 IYGGKESLKINEVREHLLNKDKIDKQLTGSPNGDDSSALYAK--------EKKGKQRSST 290
++ G+++L + EV+ L +++ K G D AL A+ + K K+RS
Sbjct: 163 LF-GRDTLTLEEVKATLNSRELKKKITENKGEGGDPEALMARGRLEKRDSKSKNKRRSKY 221
Query: 289 NSEVKSCSFCKRTGHVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXETHVADLVGDEEVVC 110
+E K+C +CK+ GH R VAD EV
Sbjct: 222 KNE-KACYYCKKEGHFRKECPERKKKNNGKYNDESDIAV---------VADGYESAEV-- 269
Query: 109 SVTDSLVSNDDDWIVDSGCSKHISPKAETFSTYTSV 2
++ S + ++WI+DSGCS H++P E FS+Y +
Sbjct: 270 -LSISTKKHSEEWILDSGCSFHMTPNLEWFSSYKEI 304
>gb|KJB48829.1| hypothetical protein B456_008G089200 [Gossypium raimondii]
Length = 164
Score = 151 bits (381), Expect(2) = 7e-42
Identities = 69/123 (56%), Positives = 95/123 (77%)
Frame = -3
Query: 805 PSDMKDADWEELDDKALTAIQLCLADEVLDQVINEKTAASLWSRLQDHYLKKSLANRIIL 626
P ++ WEELD KAL+ IQLCLA+ VL +V+ EKT+++LW RL+ Y KSLANR++L
Sbjct: 42 PENLNKTKWEELDGKALSVIQLCLANTVLQEVLMEKTSSALWKRLETLYATKSLANRLVL 101
Query: 625 KQRLFLLRMQEGAPVNSHIAEFTSIINELDKIEVKIEDEDQALLLLCSLPSTYKSFRDAI 446
KQ LF RM EG + HI++F +++N+L K+EV I+DEDQA+LLLCSLP +YKSF++ +
Sbjct: 102 KQHLFTFRMNEGEILRDHISQFITLLNDLKKVEVHIDDEDQAMLLLCSLPPSYKSFKEIL 161
Query: 445 IYG 437
IYG
Sbjct: 162 IYG 164
Score = 49.3 bits (116), Expect(2) = 7e-42
Identities = 22/36 (61%), Positives = 27/36 (75%)
Frame = -2
Query: 920 TAIKFDIQKFDGVINFSRWQVRMNAILTQHGLKKAL 813
T +F+I+KFDG NF+ WQVRM AIL Q GLKK +
Sbjct: 2 TTTRFEIEKFDGETNFNLWQVRMMAILVQSGLKKVV 37
>gb|EOY09126.1| Uncharacterized protein TCM_024518 [Theobroma cacao]
Length = 277
Score = 152 bits (385), Expect = 1e-40
Identities = 79/194 (40%), Positives = 130/194 (67%), Gaps = 5/194 (2%)
Frame = -3
Query: 805 PSDMKDADWEELDDKALTAIQLCLADEVLDQVINEKTAASLWSRLQDHYLKKSLANRIIL 626
PS++ D++ ++L +KA +AI L L+DEVL +V +E++AA++W +L+ Y+ KSL NR+ +
Sbjct: 46 PSNLSDSEKDDLMEKAHSAILLTLSDEVLREVTDEESAAAMWFKLESIYITKSLTNRLYM 105
Query: 625 KQRLFLLRMQEGAPVNSHIAEFTSIINELDKIEVKIEDEDQALLLLCSLPSTYKSFRDAI 446
KQRL+ L+M EG VN+HI EF +I +L I+VKIEDED AL+LLC LP +Y++F D +
Sbjct: 106 KQRLYTLKMSEGTSVNTHIDEFNRVILDLKNIDVKIEDEDLALILLCYLPPSYENFVDTM 165
Query: 445 IYGGKESLKINEVREHLLNKDKIDKQLTGSPNGDDSSALYAKEKKGKQ-----RSSTNSE 281
+Y G+++L +VR + LN ++ K++ G N + + L +GK+ + + ++
Sbjct: 166 LY-GRDTLTFEDVRAY-LNSKELKKKVGGIRNENQAEGLVVNRGRGKEKGLDKKGKSRAK 223
Query: 280 VKSCSFCKRTGHVR 239
K+C C + GH R
Sbjct: 224 GKTCWNCGQKGHFR 237
>gb|KYP36635.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 364
Score = 155 bits (391), Expect = 1e-40
Identities = 95/271 (35%), Positives = 143/271 (52%), Gaps = 7/271 (2%)
Frame = -3
Query: 802 SDMKDADWEELDDKALTAIQLCLADEVLDQVINEKTAASLWSRLQDHYLKKSLANRIILK 623
S K + E ++KA + I L L+DEVL +V +E+TA+ LW +L+ Y+ KS+ N+++LK
Sbjct: 56 SASKIEELAEQEEKAHSLILLSLSDEVLYEVADEETASGLWCKLEKLYMTKSICNKLLLK 115
Query: 622 QRLFLLRMQEGAPVNSHIAEFTSIINELDKIEVKIEDEDQALLLLCSLPSTYKSFRDAII 443
+RLF L M+EG P+ H+ E S++ EL I+VKIEDED A++LL SLP +Y+SF +++
Sbjct: 116 RRLFGLHMKEGTPLKDHLDELNSVLMELRDIDVKIEDEDAAMILLASLPPSYESFVNSLS 175
Query: 442 YGGKESLKINEV------REHLLNKDKIDKQLTGSPNGDDSSALYAKEKKGKQRSSTNSE 281
GKE + + EV RE L ++ GS +S K+KK K + TN
Sbjct: 176 V-GKECITMEEVKSSLHSREFRLRASGNSEESNGSSLVVSNSGKNMKKKKDKSKRKTNVN 234
Query: 280 VKS-CSFCKRTGHVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXETHVADLVGDEEVVCSV 104
K C++CK GH + + + E+V S+
Sbjct: 235 PKDICNYCKEPGHWKKDCPKKKGKPSAAVAK----------------EESTSENELVLSI 278
Query: 103 TDSLVSNDDDWIVDSGCSKHISPKAETFSTY 11
D ++D WI+DSGCS H+ P F TY
Sbjct: 279 ADQPQHSEDQWILDSGCSFHMCPNRTWFDTY 309
>gb|KYP37021.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 352
Score = 152 bits (385), Expect = 6e-40
Identities = 94/271 (34%), Positives = 142/271 (52%), Gaps = 7/271 (2%)
Frame = -3
Query: 802 SDMKDADWEELDDKALTAIQLCLADEVLDQVINEKTAASLWSRLQDHYLKKSLANRIILK 623
S K + E ++KA + I L L+DEVL +V +E+TA+ LW +L+ Y+ KS+ N+++LK
Sbjct: 56 SASKIEELAEQEEKAHSLILLSLSDEVLYEVADEETASGLWCKLEKLYMTKSICNKLLLK 115
Query: 622 QRLFLLRMQEGAPVNSHIAEFTSIINELDKIEVKIEDEDQALLLLCSLPSTYKSFRDAII 443
+RLF L M+EG P+ H+ E S++ EL I+VKIEDED A++LL LP +Y+SF +++
Sbjct: 116 RRLFGLHMKEGTPLKDHLDELNSVLMELRDIDVKIEDEDAAMILLAYLPPSYESFVNSLS 175
Query: 442 YGGKESLKINEV------REHLLNKDKIDKQLTGSPNGDDSSALYAKEKKGKQRSSTNSE 281
GKE + + EV RE L ++ GS +S K+KK K + TN
Sbjct: 176 V-GKECITMEEVKSSLHSREFRLRASGNSEESNGSSLVVSNSGKNMKKKKDKSKRKTNVN 234
Query: 280 VKS-CSFCKRTGHVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXETHVADLVGDEEVVCSV 104
K C++CK GH + + + E+V S+
Sbjct: 235 PKDICNYCKEPGHWKKDCPKKKGKPSAAVAK----------------EESTSENELVLSI 278
Query: 103 TDSLVSNDDDWIVDSGCSKHISPKAETFSTY 11
D ++D WI+DSGCS H+ P F TY
Sbjct: 279 ADQPQHSEDQWILDSGCSFHMCPNRTWFDTY 309
>gb|EOY22705.1| Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
Length = 1029
Score = 147 bits (371), Expect(2) = 2e-39
Identities = 78/194 (40%), Positives = 126/194 (64%), Gaps = 5/194 (2%)
Frame = -3
Query: 805 PSDMKDADWEELDDKALTAIQLCLADEVLDQVINEKTAASLWSRLQDHYLKKSLANRIIL 626
PS++ D + ++L KA + I L L+DEVL +V +E++AA++W +L+ Y+ KSL NR+ +
Sbjct: 168 PSNLSDGEKDDLMKKAHSVILLALSDEVLREVTDEESAAAVWFKLESIYMTKSLTNRLYM 227
Query: 625 KQRLFLLRMQEGAPVNSHIAEFTSIINELDKIEVKIEDEDQALLLLCSLPSTYKSFRDAI 446
KQRL+ L+M EG VN+HI EF +I +L I+VKIEDED AL+LLC LP +Y++F D +
Sbjct: 228 KQRLYTLKMSEGTSVNTHIDEFNRVILDLKNIDVKIEDEDLALILLCYLPPSYENFVDTM 287
Query: 445 IYGGKESLKINEVREHLLNKDKIDKQLTGSPNGDDSSALYAKEKKGKQ-----RSSTNSE 281
+Y G+++L +VR LN ++ K++ G N + + L +GK+ + + ++
Sbjct: 288 LY-GRDTLTFEDVRAS-LNFKELKKKVGGIRNENQAEGLVVNRGRGKEKGLDRKGKSRAK 345
Query: 280 VKSCSFCKRTGHVR 239
K+C C + GH R
Sbjct: 346 GKTCWNCGQKGHFR 359
Score = 45.1 bits (105), Expect(2) = 2e-39
Identities = 22/43 (51%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Frame = -2
Query: 932 IAMSTA-IKFDIQKFDGVINFSRWQVRMNAILTQHGLKKALLG 807
+AM+T+ K++I+KF+G +FS W+V+M A+L Q GL KAL G
Sbjct: 121 LAMATSSTKYEIEKFNGRNDFSLWRVKMRALLVQQGLLKALKG 163
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 155 bits (391), Expect = 3e-38
Identities = 89/265 (33%), Positives = 142/265 (53%), Gaps = 8/265 (3%)
Frame = -3
Query: 772 LDDKALTAIQLCLADEVLDQVINEKTAASLWSRLQDHYLKKSLANRIILKQRLFLLRMQE 593
L++KA + I LCLAD+V+ +V +E+TAA LW +L+ Y+ KSL N+++LKQRLF LRM E
Sbjct: 52 LEEKAHSTIMLCLADDVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRMAE 111
Query: 592 GAPVNSHIAEFTSIINELDKIEVKIEDEDQALLLLCSLPSTYKSFRDAIIYGGKESLKIN 413
G + H+ + +++ EL I+VKIEDED AL+LL SLP ++++F + I GK+++ +
Sbjct: 112 GTQLREHLEQLNTLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIV-GKDTVSLE 170
Query: 412 EVREHLLNKDKIDKQLTGSPNGDDSSALYAKEKKGKQRSSTNSEVKS--------CSFCK 257
EVR L +++ + + G+ S L+ +KG++ ++ S C++CK
Sbjct: 171 EVRSALHSRE-LRHKANGTSTDIQPSGLFTSSRKGRKNGGKKNKPMSKGAKPDDVCNYCK 229
Query: 256 RTGHVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXETHVADLVGDEEVVCSVTDSLVSNDD 77
GH + + EE + V D + D
Sbjct: 230 EKGHWKFDCPKKKKQSEKQSVSAAV------------AEEDTNSEEDIALVADEHTHHSD 277
Query: 76 DWIVDSGCSKHISPKAETFSTYTSV 2
W++DSG S HI P+ E F+TY V
Sbjct: 278 VWVLDSGASYHICPRREWFTTYEQV 302
>gb|KYP64673.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 780
Score = 148 bits (374), Expect(2) = 4e-38
Identities = 88/275 (32%), Positives = 144/275 (52%), Gaps = 12/275 (4%)
Frame = -3
Query: 802 SDMKDADWEELDDKALTAIQLCLADEVLDQVINEKTAASLWSRLQDHYLKKSLANRIILK 623
S + + + +KA +AI LCL D+ L +V EKTAA++W +L+ Y+ KSLA+R+ LK
Sbjct: 45 SSLTQKEKTNMIEKARSAIILCLGDKALREVAREKTAAAMWLKLESLYMTKSLAHRLCLK 104
Query: 622 QRLFLLRMQEGAPVNSHIAEFTSIINELDKIEVKIEDEDQALLLLCSLPSTYKSFRDAII 443
QRL+ +M E + +AEF I+++L+ IEV++EDED+ALLLL SLP Y+ F+DAI+
Sbjct: 105 QRLYSFKMTETKSIVDQLAEFNKILDDLENIEVQLEDEDKALLLLNSLPRNYEHFKDAIL 164
Query: 442 YGGKESLKINEVREHLLNKDKIDKQLTGSPNGDDSSALYAK---EKKGKQRSSTNSEVKS 272
YG ++ + ++EV+ + K+ + +Q + + S ++ EKKG+ + + KS
Sbjct: 165 YGKEQDITLDEVQTSIRTKE-LQRQQDNKTDDNGESLNVSRGRSEKKGQSQKGKKARSKS 223
Query: 271 ---------CSFCKRTGHVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXETHVADLVGDEE 119
C +C + GH + ++D +
Sbjct: 224 KIGDRSKFKCFYCHKVGHFK----------KNCPERNRDQKSSADSADIAAISDGYESAD 273
Query: 118 VVCSVTDSLVSNDDDWIVDSGCSKHISPKAETFST 14
V+ T DW++DSGCS H+ PK + F T
Sbjct: 274 VLVVTTS---QTQKDWVMDSGCSYHMCPKKDYFET 305
Score = 39.3 bits (90), Expect(2) = 4e-38
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = -2
Query: 911 KFDIQKFDGVINFSRWQVRMNAILTQHGLKKALLG 807
K+DI+KF G +F W+++M AIL Q G +A+ G
Sbjct: 5 KYDIEKFSGENDFGLWRIKMEAILIQQGCAEAIKG 39
>gb|PNX71218.1| putative retrotransposon Ty1-copia subclass protein [Trifolium
pratense]
gb|PNY02521.1| putative retrotransposon Ty1-copia subclass protein [Trifolium
pratense]
Length = 257
Score = 141 bits (355), Expect(2) = 3e-37
Identities = 70/195 (35%), Positives = 114/195 (58%), Gaps = 8/195 (4%)
Frame = -3
Query: 805 PSDMKDADWEELDDKALTAIQLCLADEVLDQVINEKTAASLWSRLQDHYLKKSLANRIIL 626
P+DM D DW EL +KA I+LC++DEV+ +++ + + +L+ Y+ K+ NR+
Sbjct: 45 PTDMADDDWLELQEKAAGLIRLCVSDEVMYHILDLTSPKEVLDKLESQYISKTRMNRLFT 104
Query: 625 KQRLFLLRMQEGAPVNSHIAEFTSIINELDKIEVKIEDEDQALLLLCSLPSTYKSFRDAI 446
K RL+ L+M+EG+ + H+ F +II EL K+ VKI+DED A++LLCSLPS+YK + +
Sbjct: 105 KMRLYSLKMREGSDLQQHVNTFNNIITELVKLGVKIDDEDSAIMLLCSLPSSYKHLVNTL 164
Query: 445 IYGGKESLKINEVREHLLNKDKIDKQLTGSPNG--------DDSSALYAKEKKGKQRSST 290
IY GK+++ +N + LL+ ++ + + G D + K GK S
Sbjct: 165 IY-GKDTISLNVITATLLSHSRMSQNVEVGTQGKGLYVKGSQDHGQIKGKADSGKMSKSK 223
Query: 289 NSEVKSCSFCKRTGH 245
N ++ C CK+ GH
Sbjct: 224 NRKIAECYSCKQIGH 238
Score = 43.9 bits (102), Expect(2) = 3e-37
Identities = 17/40 (42%), Positives = 29/40 (72%)
Frame = -2
Query: 932 IAMSTAIKFDIQKFDGVINFSRWQVRMNAILTQHGLKKAL 813
+A+ + +KF++++FDG NF W+ R+ +L Q GL+KAL
Sbjct: 1 MAIDSGVKFEVERFDGTGNFRLWERRVKDLLAQQGLQKAL 40
>dbj|GAU44261.1| hypothetical protein TSUD_400070 [Trifolium subterraneum]
Length = 635
Score = 149 bits (376), Expect = 8e-37
Identities = 96/279 (34%), Positives = 145/279 (51%), Gaps = 15/279 (5%)
Frame = -3
Query: 805 PSDMKDADWEELDDKALTAIQLCLADEVLDQVINEKTAASLWSRLQDHYLKKSLANRIIL 626
P+++ D + E+DDKAL+AI LCLAD+VL +V EK+AA++W++L Y+ KSLA++ L
Sbjct: 185 PTNLSDTEKAEMDDKALSAIILCLADKVLREVAKEKSAAAMWAKLDKLYMTKSLAHKQCL 244
Query: 625 KQRLFLLRMQEGAPVNSHIAEFTSIINELDKIEVKIEDEDQALLLLCSLPSTYKSFRDAI 446
KQ+L+ RM E V+ ++EF II++L I+VKIEDEDQA LLC+LP + + DA+
Sbjct: 245 KQQLYFFRMVENKSVSEQLSEFNKIIDDLANIDVKIEDEDQAFHLLCALPKSLEHLNDAL 304
Query: 445 IYGGKESLKINEVREHL-------LNKDKIDKQLTG----SPNGDDSSALYAKEKKGKQR 299
IYG + ++ ++EV+ L LN+ KID G D+ K+ + K R
Sbjct: 305 IYGKEGTITLDEVQAALRTKELIKLNELKIDDSGEGLNVTRGRSDNRGKGKGKKHRSKSR 364
Query: 298 SSTNSEVK-SCSFCKRTGHVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXETHVADLVGDE 122
+ + K C C GH + + V +E
Sbjct: 365 AKGDGGSKFKCYHCHEPGHFK------------------KDCPQRRGSDSSSAQIAVSEE 406
Query: 121 EVVCSVTDSLVSN---DDDWIVDSGCSKHISPKAETFST 14
E S V++ + W++DSGCS HI P + F T
Sbjct: 407 EGYESAGALTVTSWEPEKSWVMDSGCSYHICPSKKYFET 445
>gb|OMO83367.1| Integrase, catalytic core [Corchorus capsularis]
Length = 785
Score = 149 bits (377), Expect = 1e-36
Identities = 87/275 (31%), Positives = 144/275 (52%), Gaps = 10/275 (3%)
Frame = -3
Query: 805 PSDMKDADWEELDDKALTAIQLCLADEVLDQVINEKTAASLWSRLQDHYLKKSLANRIIL 626
P D + +E++ KA +AI L L++EVL +V+ EK ASLW L D Y+KKSLANR+
Sbjct: 20 PEKSTDKEIKEINSKAHSAILLSLSNEVLREVVAEKDTASLWKALDDKYMKKSLANRLFQ 79
Query: 625 KQRLFLLRMQEGAPVNSHIAEFTSIINELDKIEVKIEDEDQALLLLCSLPSTYKSFRDAI 446
KQRL+ +M E P+ H+ F II +L + VKIEDED AL+LL SLP ++++FRD +
Sbjct: 80 KQRLYTFKMVENTPIKDHLDSFNRIILDLGGVRVKIEDEDLALILLFSLPRSFQNFRDTM 139
Query: 445 IYGGKESLKINEVREHLLNKDKIDKQLTGSPNGDDSSALYAKEKKGKQRSSTNSEVKS-- 272
+Y G++++ + +V++ LL+K+ +K S + D + L + K++SS + +S
Sbjct: 140 LY-GRDTIALKDVKDALLSKELQNKV---SADVDGEAGLIVTRGRNKEKSSGTTRFRSRS 195
Query: 271 --------CSFCKRTGHVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXETHVADLVGDEEV 116
C +C GH+R + + + DE
Sbjct: 196 KSRVSRLRCFYCNEKGHLRKDCPDRKKGNSSEKMESNVKAMVAIVQEGSSLVETSDDEVG 255
Query: 115 VCSVTDSLVSNDDDWIVDSGCSKHISPKAETFSTY 11
+T S + + W++D+ S H++ F+T+
Sbjct: 256 TDVLTVSTTGSANTWVLDTSASYHMTFSRNLFTTF 290
>gb|KYP67041.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 325
Score = 142 bits (358), Expect = 3e-36
Identities = 91/275 (33%), Positives = 143/275 (52%), Gaps = 10/275 (3%)
Frame = -3
Query: 805 PSDMKDADWEELDDKALTAIQLCLADEVLDQVINEKTAASLWSRLQDHYLKKSLANRIIL 626
P+ M D + + +KA + I L L DEVL +V E TAA +W L+D + KKSL NR+
Sbjct: 44 PTTMTDDVKKAMLEKAHSLILLSLTDEVLREVGEETTAAGMWKMLEDKFQKKSLTNRLYQ 103
Query: 625 KQRLFLLRMQEGAPVNSHIAEFTSIINELDKIEVKIEDEDQALLLLCSLPSTYKSFRDAI 446
KQRL+ L+M E V H+ F II +L I VK++DED A++LLCSLP +Y++F D +
Sbjct: 104 KQRLYTLQMSENMSVRDHLDNFNRIILDLQSIGVKVDDEDLAIILLCSLPKSYENFIDTM 163
Query: 445 IYGGKESLKINEVREHLLNKDKIDKQLTGSPNGDDSSALYAK--------EKKGKQRSST 290
+Y G++S+ +N V++ L +K K+ +++ S N DD ++ KG RS++
Sbjct: 164 LY-GRDSITLNNVKDSLQSK-KLKRRVVSSSNVDDVGLTVSRGRSMERGNSSKGHTRSNS 221
Query: 289 NSEVKS--CSFCKRTGHVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXETHVADLVGDEEV 116
S+ K C CK GH+R + D GD
Sbjct: 222 LSKSKKVRCYKCKEVGHIRKNCPQLKKNRNSNASAAVVRSSATVSSESSDEGD-GGD--- 277
Query: 115 VCSVTDSLVSNDDDWIVDSGCSKHISPKAETFSTY 11
+T S + D W++D+G S H++ + F+++
Sbjct: 278 --VLTVSTIGFADTWVIDTGASYHMTFNRKLFNSF 310