BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon23_contig00011088
         (408 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP74424.1| Retrovirus-related Pol polyprotein from transposo...    58   4e-07
gb|KYP57490.1| Retrovirus-related Pol polyprotein from transposo...    55   3e-06
gb|OMO58863.1| Zinc finger, CCHC-type [Corchorus capsularis]           55   3e-06

>gb|KYP74424.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 584

 Score = 58.2 bits (139), Expect = 4e-07
 Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
 Frame = +2

Query: 20  CNYCHEPGHMKYNCPRKQAKEAHMAXXXXXXXXXXXXXXXTSLVDDQLRHXXXXXXXXXX 199
           CNYCH  GH++ NC RK+A+E   +               +SL D  +            
Sbjct: 240 CNYCHLFGHLEVNC-RKKAREQSSSANVAHVPNTTSSAGSSSLTDVTISASDYQDLLQLR 298

Query: 200 XXXXXTPPSSFSATVSNKGXXXXXXXXXXXQ-PWVIDTGATDHMTGNRGIMS--SFSPIS 370
                  P++   TV++ G             PW++D+GA+DHMTGN+   S  SFS   
Sbjct: 299 AAQQFASPAT---TVAHSGNPVAFMSQSPSLGPWILDSGASDHMTGNQSYFSKLSFSDSL 355

Query: 371 NSVRLADGSR 400
             V LADGS+
Sbjct: 356 PPVTLADGSQ 365


>gb|KYP57490.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 362

 Score = 55.5 bits (132), Expect = 3e-06
 Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 3/130 (2%)
 Frame = +2

Query: 20  CNYCHEPGHMKYNCPRKQAKEAHMAXXXXXXXXXXXXXXXTSLVDDQLRHXXXXXXXXXX 199
           CNYCH  GH++ NC RK+A+E   +               +SL D  +            
Sbjct: 124 CNYCHLFGHLEVNC-RKKAREQSSSANVAHVPNTTSSVGSSSLTDVTISASDYQDLLQLR 182

Query: 200 XXXXXTPPSSFSATVSNKGXXXXXXXXXXXQ-PWVIDTGATDHMTGNRGIMS--SFSPIS 370
                  P++   TV++ G             PW++D+ A+DHMTGN+   S  SFS   
Sbjct: 183 AAQQSASPAT---TVAHSGNPVAFMSQSPSLGPWILDSDASDHMTGNQSYFSKLSFSDSL 239

Query: 371 NSVRLADGSR 400
             V LADGS+
Sbjct: 240 PPVTLADGSQ 249


>gb|OMO58863.1| Zinc finger, CCHC-type [Corchorus capsularis]
          Length = 482

 Score = 55.5 bits (132), Expect = 3e-06
 Identities = 39/133 (29%), Positives = 55/133 (41%), Gaps = 4/133 (3%)
 Frame = +2

Query: 14  IYCNYCHEPGHMKYNCPR--KQAKEAHMAXXXXXXXXXXXXXXXTSLVDDQLRHXXXXXX 187
           I C YCHE GH KYNCP+  K+   + M                T    DQ +       
Sbjct: 347 IECYYCHELGHTKYNCPKLKKKTDSSKMGRVAAVTSSAETLDADTHSTADQTQEIIRQVI 406

Query: 188 XXXXXXXXXTPPSSFSATVSNKGXXXXXXXXXXXQPWVIDTGATDHMTGNRGIMSSFSPI 367
                        + SA  ++ G           + W+ID+GA +HMT +  I+ S  PI
Sbjct: 407 SSMSNNSMGNNSIAASALSTSPGISS--------KDWIIDSGAFNHMTFDSSILESSKPI 458

Query: 368 --SNSVRLADGSR 400
             S+S+  A+GSR
Sbjct: 459 SYSSSIHTANGSR 471