BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon23_contig00009248
         (1081 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP73716.1| Retrovirus-related Pol polyprotein from transposo...   370   e-125
gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subc...   376   e-118
gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japoni...   378   e-117
gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Ja...   377   e-117
gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-...   376   e-116
emb|CAE01299.2| OSJNBa0020P07.16 [Oryza sativa Japonica Group]        376   e-116
emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa Japonica Group]         376   e-116
gb|AAT58846.1| putative polyprotein [Oryza sativa Japonica Group]     374   e-116
gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group]     376   e-116
emb|CAE02325.2| OSJNBb0112E13.7 [Oryza sativa Japonica Group]         375   e-116
emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]         374   e-116
emb|CAE03764.2| OSJNBa0013K16.13 [Oryza sativa Japonica Group]        374   e-116
emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]         374   e-116
gb|AAO60021.1| putative polyprotein [Oryza sativa Japonica Group...   373   e-116
gb|AAX96223.1| retrotransposon protein, putative, Ty1-copia sub-...   374   e-115
gb|AAS01934.1| putative Integrase core domain containing protein...   371   e-115
gb|ABA93820.1| retrotransposon protein, putative, Ty1-copia subc...   371   e-115
gb|KYP54652.1| Retrovirus-related Pol polyprotein from transposo...   365   e-115
gb|ABF96702.1| retrotransposon protein, putative, Ty1-copia subc...   376   e-115
gb|ABF96953.1| retrotransposon protein, putative, Ty1-copia subc...   371   e-115

>gb|KYP73716.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 304

 Score =  370 bits (951), Expect = e-125
 Identities = 183/305 (60%), Positives = 239/305 (78%), Gaps = 1/305 (0%)
 Frame = +1

Query: 13  LCLYVDDILIFGTTLEVILKVKEYLSKNFDMKDLGPADMILGMKITRNNKGISLSLSHSI 192
           LCLYVDDILIFG+ L VI  VK +LS NF+MKDLG  D+ILG+K+ +N+ GI L+ SH I
Sbjct: 1   LCLYVDDILIFGSNLHVINDVKSFLSSNFEMKDLGLVDVILGIKLIKNHDGIVLTQSHYI 60

Query: 193 HKMLHKFNFHDSKAVSTPYDSSISLKKNEGEPVSQLRYSQLIGSLLYISNRTRPDIAYAV 372
            K+L KFN+ D K VSTP+D SI LKKN GE VS L+YSQ+IGSLL++SN +RPDIAYAV
Sbjct: 61  EKILKKFNYFDVKPVSTPFDPSIKLKKNIGESVSPLKYSQIIGSLLHLSNFSRPDIAYAV 120

Query: 373 GRLSRYTSNPSKEHWTALERVFKYLKGTVDYCLTYTGYPDAIEGYSDANWVTDSNSVKST 552
           GRL RYT NP   HW ALER+F+YLKGTV+Y + Y  YP  IEG+ DANW++DS+  KST
Sbjct: 121 GRLGRYTHNPDHSHWLALERLFRYLKGTVNYGIHYACYPVVIEGFCDANWISDSDETKST 180

Query: 553 TGYVFLYGGAAVSWKSCKQTVIARSTMEAELIALDTTCTEAEWLKDLVSELPLVCKPVPP 732
           +GYVF   G AV+WKS KQT+I+RSTMEAE+IALDT  +EAE+LK+L+ +LPL+ KP+PP
Sbjct: 181 SGYVFTLAGGAVAWKSAKQTIISRSTMEAEIIALDTASSEAEFLKNLLYDLPLLNKPIPP 240

Query: 733 ISLHSDSRSTIELLKQVHVNKKLNRHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPLTK 909
           IS+H DS+  I  +   + N+K  RH+++R+K ++ L+   V+ +DF++SE NLADPLTK
Sbjct: 241 ISMHCDSQVAIIKVTSKNFNEK-RRHLRIRHKFIRNLITHGVISVDFIRSENNLADPLTK 299

Query: 910 GLSKR 924
           GL+++
Sbjct: 300 GLTRQ 304


>gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1095

 Score =  376 bits (966), Expect = e-118
 Identities = 182/320 (56%), Positives = 246/320 (76%), Gaps = 1/320 (0%)
 Frame = +1

Query: 7    VILCLYVDDILIFGTTLEVILKVKEYLSKNFDMKDLGPADMILGMKITRNNKGISLSLSH 186
            VILCLYVDDILIFGT LEVI +VK +LS+NFDMKDLG AD+IL +K+ R   GI+L  SH
Sbjct: 775  VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSH 834

Query: 187  SIHKMLHKFNFHDSKAVSTPYDSSISLKKNEGEPVSQLRYSQLIGSLLYISNRTRPDIAY 366
             + K+L++F + DSK   TPYD S+ L+KN+    +QL YSQ+IGSL+Y+++ TRPDI++
Sbjct: 835  YVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISF 894

Query: 367  AVGRLSRYTSNPSKEHWTALERVFKYLKGTVDYCLTYTGYPDAIEGYSDANWVTDSNSVK 546
            AV +LSR+TSNP  +HW ALERV +YLKGTV+  L YTGYP  +EGYSD+NW++D + +K
Sbjct: 895  AVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIK 954

Query: 547  STTGYVFLYGGAAVSWKSCKQTVIARSTMEAELIALDTTCTEAEWLKDLVSELPLVCKPV 726
            +T+GYVF  GG AVSW+SCKQT++ RSTMEAEL ALDT   EAEWL+DL+ +LP+V KPV
Sbjct: 955  ATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPV 1014

Query: 727  PPISLHSDSRSTIELLKQVHVNKKLNRHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPL 903
            P I ++ D+++ I  +     N K +RH++ R KSV++L    V+ LD++++ +NLADP 
Sbjct: 1015 PAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPF 1074

Query: 904  TKGLSKRMILDSSSEMGLSP 963
            TKGLS+ +I ++S EMGL P
Sbjct: 1075 TKGLSRNVINNASKEMGLRP 1094


>gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  378 bits (971), Expect = e-117
 Identities = 183/320 (57%), Positives = 247/320 (77%), Gaps = 1/320 (0%)
 Frame = +1

Query: 7    VILCLYVDDILIFGTTLEVILKVKEYLSKNFDMKDLGPADMILGMKITRNNKGISLSLSH 186
            VILCLYVDDILIFGT LEVI +VK +LS+NFDMKDLG AD+IL +K+ R   GI+L  SH
Sbjct: 982  VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSH 1041

Query: 187  SIHKMLHKFNFHDSKAVSTPYDSSISLKKNEGEPVSQLRYSQLIGSLLYISNRTRPDIAY 366
             + K+L++F + DSK   TPYD S+SL+KN+    +QL YSQ+IGSL+Y+++ TRPDI++
Sbjct: 1042 YVEKILNRFGYIDSKPSPTPYDPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISF 1101

Query: 367  AVGRLSRYTSNPSKEHWTALERVFKYLKGTVDYCLTYTGYPDAIEGYSDANWVTDSNSVK 546
            AV +LSR+TSNP  +HW ALERV +YLKGTV+  L YTGYP  +EGYSD+NW++D + +K
Sbjct: 1102 AVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIK 1161

Query: 547  STTGYVFLYGGAAVSWKSCKQTVIARSTMEAELIALDTTCTEAEWLKDLVSELPLVCKPV 726
            +T+GYVF  GG AVSW+SCKQT++ RSTMEAEL ALDT   EAEWL+DL+ +LP+V KPV
Sbjct: 1162 ATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPV 1221

Query: 727  PPISLHSDSRSTIELLKQVHVNKKLNRHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPL 903
            P I ++ D+++ I  +     N K +RH++ R KSV++L    V+ LD++++ +NLADP 
Sbjct: 1222 PAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPF 1281

Query: 904  TKGLSKRMILDSSSEMGLSP 963
            TKGLS+ +I ++S EMGL P
Sbjct: 1282 TKGLSRNVIDNASKEMGLRP 1301


>gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  377 bits (969), Expect = e-117
 Identities = 182/320 (56%), Positives = 247/320 (77%), Gaps = 1/320 (0%)
 Frame = +1

Query: 7    VILCLYVDDILIFGTTLEVILKVKEYLSKNFDMKDLGPADMILGMKITRNNKGISLSLSH 186
            VILCLYVDDILIFGT +EVI +VK +LS+NFDMKDLG AD+IL +K+ R   GI+L  SH
Sbjct: 982  VILCLYVDDILIFGTNIEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSH 1041

Query: 187  SIHKMLHKFNFHDSKAVSTPYDSSISLKKNEGEPVSQLRYSQLIGSLLYISNRTRPDIAY 366
             + K+L++F + DSK   TPYD S+SL+KN+    +QL YSQ+IGSL+Y+++ TRPDI++
Sbjct: 1042 YVEKILNRFGYIDSKPSPTPYDPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISF 1101

Query: 367  AVGRLSRYTSNPSKEHWTALERVFKYLKGTVDYCLTYTGYPDAIEGYSDANWVTDSNSVK 546
            AV +LSR+TSNP  +HW ALERV +YLKGTV+  L YTGYP  +EGYSD+NW++D + +K
Sbjct: 1102 AVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIK 1161

Query: 547  STTGYVFLYGGAAVSWKSCKQTVIARSTMEAELIALDTTCTEAEWLKDLVSELPLVCKPV 726
            +T+GYVF  GG AVSW+SCKQT++ RSTMEAEL ALDT   EAEWL+DL+ +LP+V KPV
Sbjct: 1162 ATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPV 1221

Query: 727  PPISLHSDSRSTIELLKQVHVNKKLNRHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPL 903
            P I ++ D+++ I  +     N K +RH++ R KSV++L    V+ LD++++ +NLADP 
Sbjct: 1222 PAILMNCDNQTVIVKVNNSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPF 1281

Query: 904  TKGLSKRMILDSSSEMGLSP 963
            TKGLS+ +I ++S EMGL P
Sbjct: 1282 TKGLSRNVIDNASKEMGLRP 1301


>gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1302

 Score =  376 bits (965), Expect = e-116
 Identities = 182/320 (56%), Positives = 246/320 (76%), Gaps = 1/320 (0%)
 Frame = +1

Query: 7    VILCLYVDDILIFGTTLEVILKVKEYLSKNFDMKDLGPADMILGMKITRNNKGISLSLSH 186
            VILCLYVDDILIFGT LEVI +VK +LS+NFDMKDLG AD+IL +K+ R   GI+L  SH
Sbjct: 982  VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSH 1041

Query: 187  SIHKMLHKFNFHDSKAVSTPYDSSISLKKNEGEPVSQLRYSQLIGSLLYISNRTRPDIAY 366
             + K+L++F + DSK   TPYD S+ L+KN+    +QL YSQ+IGSL+Y+++ TRPDI++
Sbjct: 1042 YVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISF 1101

Query: 367  AVGRLSRYTSNPSKEHWTALERVFKYLKGTVDYCLTYTGYPDAIEGYSDANWVTDSNSVK 546
            AV +LSR+TSNP  +HW ALERV +YLKGTV+  L YTGYP  +EGYSD+NW++D + +K
Sbjct: 1102 AVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIK 1161

Query: 547  STTGYVFLYGGAAVSWKSCKQTVIARSTMEAELIALDTTCTEAEWLKDLVSELPLVCKPV 726
            +T+GYVF  GG AVSW+SCKQT++ RSTMEAEL ALDT   EAEWL+DL+ +LP+V KPV
Sbjct: 1162 ATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPV 1221

Query: 727  PPISLHSDSRSTIELLKQVHVNKKLNRHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPL 903
            P I ++ D+++ I  +     N K +RH++ R KSV++L    V+ LD++++ +NLADP 
Sbjct: 1222 PAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPF 1281

Query: 904  TKGLSKRMILDSSSEMGLSP 963
            TKGLS+ +I ++S EMGL P
Sbjct: 1282 TKGLSRNVIDNASKEMGLRP 1301


>emb|CAE01299.2| OSJNBa0020P07.16 [Oryza sativa Japonica Group]
          Length = 1314

 Score =  376 bits (965), Expect = e-116
 Identities = 182/320 (56%), Positives = 246/320 (76%), Gaps = 1/320 (0%)
 Frame = +1

Query: 7    VILCLYVDDILIFGTTLEVILKVKEYLSKNFDMKDLGPADMILGMKITRNNKGISLSLSH 186
            VILCLYVDDILIFGT LEVI +VK +LS+NFDMKDLG AD+IL +K+ R   GI+L  SH
Sbjct: 954  VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSH 1013

Query: 187  SIHKMLHKFNFHDSKAVSTPYDSSISLKKNEGEPVSQLRYSQLIGSLLYISNRTRPDIAY 366
             + K+L++F + DSK   TPYD S+ L+KN+    +QL YSQ+IGSL+Y+++ TRPDI++
Sbjct: 1014 YVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISF 1073

Query: 367  AVGRLSRYTSNPSKEHWTALERVFKYLKGTVDYCLTYTGYPDAIEGYSDANWVTDSNSVK 546
            AV +LSR+TSNP  +HW ALERV +YLKGTV+  L YTGYP  +EGYSD+NW++D + +K
Sbjct: 1074 AVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIK 1133

Query: 547  STTGYVFLYGGAAVSWKSCKQTVIARSTMEAELIALDTTCTEAEWLKDLVSELPLVCKPV 726
            +T+GYVF  GG AVSW+SCKQT++ RSTMEAEL ALDT   EAEWL+DL+ +LP+V KPV
Sbjct: 1134 ATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPV 1193

Query: 727  PPISLHSDSRSTIELLKQVHVNKKLNRHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPL 903
            P I ++ D+++ I  +     N K +RH++ R KSV++L    V+ LD++++ +NLADP 
Sbjct: 1194 PAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPF 1253

Query: 904  TKGLSKRMILDSSSEMGLSP 963
            TKGLS+ +I ++S EMGL P
Sbjct: 1254 TKGLSRNVIDNASKEMGLRP 1273


>emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa Japonica Group]
          Length = 1319

 Score =  376 bits (965), Expect = e-116
 Identities = 182/320 (56%), Positives = 246/320 (76%), Gaps = 1/320 (0%)
 Frame = +1

Query: 7    VILCLYVDDILIFGTTLEVILKVKEYLSKNFDMKDLGPADMILGMKITRNNKGISLSLSH 186
            VILCLYVDDILIFGT LEVI +VK +LS+NFDMKDLG AD+IL +K+ R   GI+L  SH
Sbjct: 982  VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSH 1041

Query: 187  SIHKMLHKFNFHDSKAVSTPYDSSISLKKNEGEPVSQLRYSQLIGSLLYISNRTRPDIAY 366
             + K+L++F + DSK   TPYD S+ L+KN+    +QL YSQ+IGSL+Y+++ TRPDI++
Sbjct: 1042 YVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISF 1101

Query: 367  AVGRLSRYTSNPSKEHWTALERVFKYLKGTVDYCLTYTGYPDAIEGYSDANWVTDSNSVK 546
            AV +LSR+TSNP  +HW ALERV +YLKGTV+  L YTGYP  +EGYSD+NW++D + +K
Sbjct: 1102 AVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIK 1161

Query: 547  STTGYVFLYGGAAVSWKSCKQTVIARSTMEAELIALDTTCTEAEWLKDLVSELPLVCKPV 726
            +T+GYVF  GG AVSW+SCKQT++ RSTMEAEL ALDT   EAEWL+DL+ +LP+V KPV
Sbjct: 1162 ATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPV 1221

Query: 727  PPISLHSDSRSTIELLKQVHVNKKLNRHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPL 903
            P I ++ D+++ I  +     N K +RH++ R KSV++L    V+ LD++++ +NLADP 
Sbjct: 1222 PAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPF 1281

Query: 904  TKGLSKRMILDSSSEMGLSP 963
            TKGLS+ +I ++S EMGL P
Sbjct: 1282 TKGLSRNVIDNASKEMGLRP 1301


>gb|AAT58846.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1229

 Score =  374 bits (960), Expect = e-116
 Identities = 181/320 (56%), Positives = 245/320 (76%), Gaps = 1/320 (0%)
 Frame = +1

Query: 7    VILCLYVDDILIFGTTLEVILKVKEYLSKNFDMKDLGPADMILGMKITRNNKGISLSLSH 186
            VILCLYVDDILIFGT LEVI +VK +L +NFDMKDLG AD+IL +K+ R   GI+L  SH
Sbjct: 909  VILCLYVDDILIFGTNLEVINEVKSFLPQNFDMKDLGVADVILNIKLIRGENGITLLQSH 968

Query: 187  SIHKMLHKFNFHDSKAVSTPYDSSISLKKNEGEPVSQLRYSQLIGSLLYISNRTRPDIAY 366
             + K+L++F + DSK   TPYD S+ L+KN+    +QL YSQ+IGSL+Y+++ TRPDI++
Sbjct: 969  YVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISF 1028

Query: 367  AVGRLSRYTSNPSKEHWTALERVFKYLKGTVDYCLTYTGYPDAIEGYSDANWVTDSNSVK 546
            AV +LSR+TSNP  +HW ALERV +YLKGTV+  L YTGYP  +EGYSD+NW++D + +K
Sbjct: 1029 AVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIK 1088

Query: 547  STTGYVFLYGGAAVSWKSCKQTVIARSTMEAELIALDTTCTEAEWLKDLVSELPLVCKPV 726
            +T+GYVF  GG AVSW+SCKQT++ RSTMEAEL ALDT   EAEWL+DL+ +LP+V KPV
Sbjct: 1089 ATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPV 1148

Query: 727  PPISLHSDSRSTIELLKQVHVNKKLNRHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPL 903
            P I ++ D+++ I  +     N K +RH++ R KSV++L    V+ LD++++ +NLADP 
Sbjct: 1149 PAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPF 1208

Query: 904  TKGLSKRMILDSSSEMGLSP 963
            TKGLS+ +I ++S EMGL P
Sbjct: 1209 TKGLSRNVIDNASKEMGLRP 1228


>gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1391

 Score =  376 bits (965), Expect = e-116
 Identities = 182/320 (56%), Positives = 246/320 (76%), Gaps = 1/320 (0%)
 Frame = +1

Query: 7    VILCLYVDDILIFGTTLEVILKVKEYLSKNFDMKDLGPADMILGMKITRNNKGISLSLSH 186
            VILCLYVDDILIFGT LEVI +VK +LS+NFDMKDLG AD+IL +K+ R   GI+L  SH
Sbjct: 1071 VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSH 1130

Query: 187  SIHKMLHKFNFHDSKAVSTPYDSSISLKKNEGEPVSQLRYSQLIGSLLYISNRTRPDIAY 366
             + K+L++F + DSK   TPYD S+ L+KN+    +QL YSQ+IGSL+Y+++ TRPDI++
Sbjct: 1131 YVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISF 1190

Query: 367  AVGRLSRYTSNPSKEHWTALERVFKYLKGTVDYCLTYTGYPDAIEGYSDANWVTDSNSVK 546
            AV +LSR+TSNP  +HW ALERV +YLKGTV+  L YTGYP  +EGYSD+NW++D + +K
Sbjct: 1191 AVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIK 1250

Query: 547  STTGYVFLYGGAAVSWKSCKQTVIARSTMEAELIALDTTCTEAEWLKDLVSELPLVCKPV 726
            +T+GYVF  GG AVSW+SCKQT++ RSTMEAEL ALDT   EAEWL+DL+ +LP+V KPV
Sbjct: 1251 ATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPV 1310

Query: 727  PPISLHSDSRSTIELLKQVHVNKKLNRHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPL 903
            P I ++ D+++ I  +     N K +RH++ R KSV++L    V+ LD++++ +NLADP 
Sbjct: 1311 PAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPF 1370

Query: 904  TKGLSKRMILDSSSEMGLSP 963
            TKGLS+ +I ++S EMGL P
Sbjct: 1371 TKGLSRNVIDNASKEMGLRP 1390


>emb|CAE02325.2| OSJNBb0112E13.7 [Oryza sativa Japonica Group]
          Length = 1342

 Score =  375 bits (963), Expect = e-116
 Identities = 181/320 (56%), Positives = 245/320 (76%), Gaps = 1/320 (0%)
 Frame = +1

Query: 7    VILCLYVDDILIFGTTLEVILKVKEYLSKNFDMKDLGPADMILGMKITRNNKGISLSLSH 186
            VILCLYVDDILIFGT LEVI +VK +LS+NFDMKDLG AD+IL +K+ R   GI+L  SH
Sbjct: 982  VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSH 1041

Query: 187  SIHKMLHKFNFHDSKAVSTPYDSSISLKKNEGEPVSQLRYSQLIGSLLYISNRTRPDIAY 366
             + K+L++F + DSK   TPYD S+ L+KN     +QL YSQ+IGSL+Y+++ TRPDI++
Sbjct: 1042 YVEKILNRFGYIDSKPSPTPYDPSLLLRKNNRIARNQLEYSQIIGSLMYLASATRPDISF 1101

Query: 367  AVGRLSRYTSNPSKEHWTALERVFKYLKGTVDYCLTYTGYPDAIEGYSDANWVTDSNSVK 546
            AV +LSR+TSNP  +HW ALER+ +YLKGTV+  L YTGYP  +EGYSD+NW++D + +K
Sbjct: 1102 AVSKLSRFTSNPGDDHWRALERIMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIK 1161

Query: 547  STTGYVFLYGGAAVSWKSCKQTVIARSTMEAELIALDTTCTEAEWLKDLVSELPLVCKPV 726
            +T+GYVF  GG AVSW+SCKQT++ RSTMEAEL ALDT   EAEWL+DL+ +LP+V KPV
Sbjct: 1162 ATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPV 1221

Query: 727  PPISLHSDSRSTIELLKQVHVNKKLNRHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPL 903
            P I ++ D+++ I  +     N K +RH++ R KSV++L    V+ LD++++ +NLADP 
Sbjct: 1222 PAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPF 1281

Query: 904  TKGLSKRMILDSSSEMGLSP 963
            TKGLS+ +I ++S EMGL P
Sbjct: 1282 TKGLSRNVIDNASKEMGLRP 1301


>emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]
          Length = 1302

 Score =  374 bits (961), Expect = e-116
 Identities = 181/320 (56%), Positives = 245/320 (76%), Gaps = 1/320 (0%)
 Frame = +1

Query: 7    VILCLYVDDILIFGTTLEVILKVKEYLSKNFDMKDLGPADMILGMKITRNNKGISLSLSH 186
            VILCLYVDDILIFGT LEVI +VK +LS+NFDMKDLG AD+IL +K+ R   GI+L  SH
Sbjct: 982  VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSH 1041

Query: 187  SIHKMLHKFNFHDSKAVSTPYDSSISLKKNEGEPVSQLRYSQLIGSLLYISNRTRPDIAY 366
             + K+L++F + DSK   TPYD S+ L+KN+    +QL YSQ+IGSL+Y+++ TRPDI++
Sbjct: 1042 YVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISF 1101

Query: 367  AVGRLSRYTSNPSKEHWTALERVFKYLKGTVDYCLTYTGYPDAIEGYSDANWVTDSNSVK 546
            AV +LSR+TSNP  +HW ALERV +YLKGTV+    YTGYP  +EGYSD+NW++D + +K
Sbjct: 1102 AVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGFHYTGYPAVLEGYSDSNWISDVDEIK 1161

Query: 547  STTGYVFLYGGAAVSWKSCKQTVIARSTMEAELIALDTTCTEAEWLKDLVSELPLVCKPV 726
            +T+GYVF  GG AVSW+SCKQT++ RSTMEAEL ALDT   EAEWL+DL+ +LP+V KPV
Sbjct: 1162 ATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPV 1221

Query: 727  PPISLHSDSRSTIELLKQVHVNKKLNRHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPL 903
            P I ++ D+++ I  +     N K +RH++ R KSV++L    V+ LD++++ +NLADP 
Sbjct: 1222 PAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPF 1281

Query: 904  TKGLSKRMILDSSSEMGLSP 963
            TKGLS+ +I ++S EMGL P
Sbjct: 1282 TKGLSRNVIDNASKEMGLRP 1301


>emb|CAE03764.2| OSJNBa0013K16.13 [Oryza sativa Japonica Group]
          Length = 1264

 Score =  374 bits (959), Expect = e-116
 Identities = 181/320 (56%), Positives = 245/320 (76%), Gaps = 1/320 (0%)
 Frame = +1

Query: 7    VILCLYVDDILIFGTTLEVILKVKEYLSKNFDMKDLGPADMILGMKITRNNKGISLSLSH 186
            VILCLYVDDILIFGT LEVI +VK +LS+NFDMKDLG AD+IL +K+ R   GI+L  SH
Sbjct: 944  VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADIILNIKLIRGENGITLLQSH 1003

Query: 187  SIHKMLHKFNFHDSKAVSTPYDSSISLKKNEGEPVSQLRYSQLIGSLLYISNRTRPDIAY 366
             + K+L++F + DSK   TPYD S+ L+KN+    +QL YSQ+IGSL+Y+++ TRPDI++
Sbjct: 1004 YVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISF 1063

Query: 367  AVGRLSRYTSNPSKEHWTALERVFKYLKGTVDYCLTYTGYPDAIEGYSDANWVTDSNSVK 546
            AV +LSR+TSNP  +HW ALERV +YLKGTV   + YTGYP  +EGYSD+NW++D + +K
Sbjct: 1064 AVSKLSRFTSNPGDDHWRALERVMRYLKGTVGLGVHYTGYPAVLEGYSDSNWISDVDEIK 1123

Query: 547  STTGYVFLYGGAAVSWKSCKQTVIARSTMEAELIALDTTCTEAEWLKDLVSELPLVCKPV 726
            +T+GYVF  GG AVSW+SCKQT++ RSTMEAEL ALDT   EAEWL+DL+ +LP+V KPV
Sbjct: 1124 ATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPV 1183

Query: 727  PPISLHSDSRSTIELLKQVHVNKKLNRHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPL 903
            P I ++ D+++ I  +     N K +RH++ R KSV++L    V+ LD++++ +NLADP 
Sbjct: 1184 PAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPF 1243

Query: 904  TKGLSKRMILDSSSEMGLSP 963
            TKGLS+ +I ++S EMGL P
Sbjct: 1244 TKGLSRNVIDNASKEMGLRP 1263


>emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]
          Length = 1319

 Score =  374 bits (961), Expect = e-116
 Identities = 181/320 (56%), Positives = 245/320 (76%), Gaps = 1/320 (0%)
 Frame = +1

Query: 7    VILCLYVDDILIFGTTLEVILKVKEYLSKNFDMKDLGPADMILGMKITRNNKGISLSLSH 186
            VILCLYVDDILIFGT LEVI +VK +LS+NFDMKDLG AD+IL +K+ R   GI+L  SH
Sbjct: 982  VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSH 1041

Query: 187  SIHKMLHKFNFHDSKAVSTPYDSSISLKKNEGEPVSQLRYSQLIGSLLYISNRTRPDIAY 366
             + K+L++F + DSK   TPYD S+ L+KN+    +QL YSQ+IGSL+Y+++ TRPDI++
Sbjct: 1042 YVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISF 1101

Query: 367  AVGRLSRYTSNPSKEHWTALERVFKYLKGTVDYCLTYTGYPDAIEGYSDANWVTDSNSVK 546
            AV +LSR+TSNP  +HW  LERV +YLKGTV+  L YTGYP  +EGYSD+NW++D + +K
Sbjct: 1102 AVSKLSRFTSNPGDDHWRVLERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIK 1161

Query: 547  STTGYVFLYGGAAVSWKSCKQTVIARSTMEAELIALDTTCTEAEWLKDLVSELPLVCKPV 726
            +T+GYVF  GG AVSW+SCKQT++ RSTMEAEL ALDT   EAEWL+DL+ +LP+V KPV
Sbjct: 1162 ATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPV 1221

Query: 727  PPISLHSDSRSTIELLKQVHVNKKLNRHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPL 903
            P I ++ D+++ I  +     N K +RH++ R KSV++L    V+ LD++++ +NLADP 
Sbjct: 1222 PAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPF 1281

Query: 904  TKGLSKRMILDSSSEMGLSP 963
            TKGLS+ +I ++S EMGL P
Sbjct: 1282 TKGLSRNVIDNASKEMGLRP 1301


>gb|AAO60021.1| putative polyprotein [Oryza sativa Japonica Group]
 gb|ABF99553.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1224

 Score =  373 bits (957), Expect = e-116
 Identities = 182/320 (56%), Positives = 243/320 (75%), Gaps = 1/320 (0%)
 Frame = +1

Query: 7    VILCLYVDDILIFGTTLEVILKVKEYLSKNFDMKDLGPADMILGMKITRNNKGISLSLSH 186
            VILCLYVDDILIFGT LEVI +VK +LS+NFDMKDLG AD+IL +K+ R   GI+L  SH
Sbjct: 904  VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSH 963

Query: 187  SIHKMLHKFNFHDSKAVSTPYDSSISLKKNEGEPVSQLRYSQLIGSLLYISNRTRPDIAY 366
             + K+L++F + DSK   TPYD S+ L KN+    +QL YSQ+IGSL+Y+++ TRPDI++
Sbjct: 964  YVEKILNRFGYIDSKPSPTPYDPSLLLHKNKRIARNQLEYSQIIGSLMYLASATRPDISF 1023

Query: 367  AVGRLSRYTSNPSKEHWTALERVFKYLKGTVDYCLTYTGYPDAIEGYSDANWVTDSNSVK 546
            AV +LSR+TSNP  +HW ALERV +YLKGTV+  L YTGYP  +EGYSD+NW++D + +K
Sbjct: 1024 AVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDKIK 1083

Query: 547  STTGYVFLYGGAAVSWKSCKQTVIARSTMEAELIALDTTCTEAEWLKDLVSELPLVCKPV 726
            +T+GYVF  GG AVSW+SCKQT++ RSTMEAEL ALDT   EAEWL+DL+ +LP+V KPV
Sbjct: 1084 ATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPV 1143

Query: 727  PPISLHSDSRSTIELLKQVHVNKKLNRHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPL 903
            P I ++ D++  I  +     N K +RH++ R KSV++L    V+ LD++++ +NLADP 
Sbjct: 1144 PAILMNCDNQMVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPF 1203

Query: 904  TKGLSKRMILDSSSEMGLSP 963
            TKGLS+ +I + S EMGL P
Sbjct: 1204 TKGLSRNVIDNVSKEMGLRP 1223


>gb|AAX96223.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA92679.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1302

 Score =  374 bits (959), Expect = e-115
 Identities = 181/320 (56%), Positives = 245/320 (76%), Gaps = 1/320 (0%)
 Frame = +1

Query: 7    VILCLYVDDILIFGTTLEVILKVKEYLSKNFDMKDLGPADMILGMKITRNNKGISLSLSH 186
            VILCLYVDDILIFGT LEVI +VK +LS+NFDMKDLG AD+IL +K+ R   GI+L  SH
Sbjct: 982  VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSH 1041

Query: 187  SIHKMLHKFNFHDSKAVSTPYDSSISLKKNEGEPVSQLRYSQLIGSLLYISNRTRPDIAY 366
             + K+L++F + DSK   TPYD S+ L+KN+    +QL YSQ+IGSL+Y+++ TRPDI++
Sbjct: 1042 YVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISF 1101

Query: 367  AVGRLSRYTSNPSKEHWTALERVFKYLKGTVDYCLTYTGYPDAIEGYSDANWVTDSNSVK 546
            AV +LSR+TSNP  +HW ALERV +YLKGTV+  L YTGYP  +EGYSD+NW++D + +K
Sbjct: 1102 AVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIK 1161

Query: 547  STTGYVFLYGGAAVSWKSCKQTVIARSTMEAELIALDTTCTEAEWLKDLVSELPLVCKPV 726
            +T+GYVF  GG AVSW+SCKQT++ RSTMEAEL ALDT   EAEWL+DL+ +LP+V KPV
Sbjct: 1162 ATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPV 1221

Query: 727  PPISLHSDSRSTIELLKQVHVNKKLNRHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPL 903
            P I ++ D+++ I  +     N K +RH++ R KSV++L    V+ LD++++ +NLADP 
Sbjct: 1222 PAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPF 1281

Query: 904  TKGLSKRMILDSSSEMGLSP 963
            T GLS+ +I ++S EMGL P
Sbjct: 1282 TMGLSRNVIDNASKEMGLRP 1301


>gb|AAS01934.1| putative Integrase core domain containing protein [Oryza sativa
            Japonica Group]
          Length = 1180

 Score =  371 bits (953), Expect = e-115
 Identities = 180/320 (56%), Positives = 243/320 (75%), Gaps = 1/320 (0%)
 Frame = +1

Query: 7    VILCLYVDDILIFGTTLEVILKVKEYLSKNFDMKDLGPADMILGMKITRNNKGISLSLSH 186
            VILCLYVDDILIFGT LEVI +VK +LS+NFDMKDLG AD+IL +K+ R   GI+L  SH
Sbjct: 860  VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSH 919

Query: 187  SIHKMLHKFNFHDSKAVSTPYDSSISLKKNEGEPVSQLRYSQLIGSLLYISNRTRPDIAY 366
             + K+L++F + DSK   TPYD S+ L+KN+    +QL YSQ+IGSL+Y+++ TRPDI++
Sbjct: 920  YVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIAGNQLEYSQIIGSLMYLASATRPDISF 979

Query: 367  AVGRLSRYTSNPSKEHWTALERVFKYLKGTVDYCLTYTGYPDAIEGYSDANWVTDSNSVK 546
             V +LSR+TSNP  +HW ALERV  YLKGTV+  L YTGYP  +EGYSD+NW++D + +K
Sbjct: 980  VVSKLSRFTSNPGDDHWRALERVMCYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIK 1039

Query: 547  STTGYVFLYGGAAVSWKSCKQTVIARSTMEAELIALDTTCTEAEWLKDLVSELPLVCKPV 726
            +T+GYVF  GG AVSW+SCKQT++ RSTME EL ALDT   EAEWL+DL+ +LP+V KPV
Sbjct: 1040 ATSGYVFTLGGGAVSWRSCKQTILTRSTMEVELTALDTATVEAEWLRDLLMDLPVVEKPV 1099

Query: 727  PPISLHSDSRSTIELLKQVHVNKKLNRHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPL 903
            P I ++ D+++ I  +     N K +RH++ R KSV++L    V+ LD++++ +NLADP 
Sbjct: 1100 PAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPF 1159

Query: 904  TKGLSKRMILDSSSEMGLSP 963
            TKGLS+ +I ++S EMGL P
Sbjct: 1160 TKGLSRNVINNASKEMGLRP 1179


>gb|ABA93820.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1166

 Score =  371 bits (952), Expect = e-115
 Identities = 179/320 (55%), Positives = 247/320 (77%), Gaps = 1/320 (0%)
 Frame = +1

Query: 7    VILCLYVDDILIFGTTLEVILKVKEYLSKNFDMKDLGPADMILGMKITRNNKGISLSLSH 186
            VILCLYVDDILIFGT LEVI +VK +LS+NFDMKDLG AD+IL +K+ +   GI+L  SH
Sbjct: 846  VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIKGENGITLLQSH 905

Query: 187  SIHKMLHKFNFHDSKAVSTPYDSSISLKKNEGEPVSQLRYSQLIGSLLYISNRTRPDIAY 366
             + K+L+ F + DSKA  TPYD+S+ L+KN+    ++L YSQ+IGSL+Y+++ TRPDI++
Sbjct: 906  YMEKILNSFGYIDSKASPTPYDTSLLLRKNKRIARNKLEYSQIIGSLIYLASATRPDISF 965

Query: 367  AVGRLSRYTSNPSKEHWTALERVFKYLKGTVDYCLTYTGYPDAIEGYSDANWVTDSNSVK 546
            AV  +SR+TSNP  +HW ALERV +YLKGT++  L Y+GYP  +EGYSD+NW++D + +K
Sbjct: 966  AVSMVSRFTSNPGDDHWRALERVMRYLKGTMELGLHYSGYPAVLEGYSDSNWISDVDEIK 1025

Query: 547  STTGYVFLYGGAAVSWKSCKQTVIARSTMEAELIALDTTCTEAEWLKDLVSELPLVCKPV 726
            +T+GYVF  GG AVSW+SCKQT++ RSTMEAEL ALDT   EAEWL+DL+ +LP+V KPV
Sbjct: 1026 ATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATIEAEWLRDLLMDLPIVEKPV 1085

Query: 727  PPISLHSDSRSTIELLKQVHVNKKLNRHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPL 903
            P I ++ D+++ I  +     N K +RH++ R KSV++L    V+ LD++++ +NLADP 
Sbjct: 1086 PAILMNCDNQTVIVKVDSSKDNMKSSRHVKKRLKSVRKLRNSGVITLDYIQTARNLADPF 1145

Query: 904  TKGLSKRMILDSSSEMGLSP 963
            TKGLS+ +I ++S EMGLSP
Sbjct: 1146 TKGLSRNVIDNASKEMGLSP 1165


>gb|KYP54652.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 900

 Score =  365 bits (937), Expect = e-115
 Identities = 172/333 (51%), Positives = 248/333 (74%), Gaps = 1/333 (0%)
 Frame = +1

Query: 1    DYVILCLYVDDILIFGTTLEVILKVKEYLSKNFDMKDLGPADMILGMKITRNNKGISLSL 180
            D VI+CLYVDD+LIFGT  +++ K K +L+ NFDMKD+G A +ILG+K+ R    I LS 
Sbjct: 568  DCVIICLYVDDMLIFGTCDDIVFKTKSFLASNFDMKDMGEASVILGVKVVRKGDSILLSQ 627

Query: 181  SHSIHKMLHKFNFHDSKAVSTPYDSSISLKKNEGEPVSQLRYSQLIGSLLYISNRTRPDI 360
             H + ++L KF+++D K+V+TPYD +  LK+N+G+ ++Q +Y+Q+IGSLL++ N +RPDI
Sbjct: 628  GHYVERLLKKFDYYDCKSVTTPYDVNSQLKQNKGDSLAQSQYAQIIGSLLHLMNFSRPDI 687

Query: 361  AYAVGRLSRYTSNPSKEHWTALERVFKYLKGTVDYCLTYTGYPDAIEGYSDANWVTDSNS 540
            AYAV RLSRYT  P+++HW AL R+ +YL+GT+DY + Y+G+P  +EGYSDANW++DS+ 
Sbjct: 688  AYAVSRLSRYTHCPNQDHWEALARLMRYLRGTMDYGIEYSGFPAVLEGYSDANWISDSDE 747

Query: 541  VKSTTGYVFLYGGAAVSWKSCKQTVIARSTMEAELIALDTTCTEAEWLKDLVSELPLVCK 720
             KST+GYVF  GG A++W+S +Q++IARSTME+E +AL+ T TEAEWL++ +  +PL  K
Sbjct: 748  TKSTSGYVFTLGGGAIAWRSVRQSIIARSTMESEFVALEMTSTEAEWLRNFLENIPLGMK 807

Query: 721  PVPPISLHSDSRSTIELLKQVHVNKKLNRHIQLRYKSVQRLL-GKVVILDFVKSEKNLAD 897
            P P +S+H D++S I + K    N K NRHIQLR+  V++LL    + +++VKSE NLAD
Sbjct: 808  PTPSVSIHCDNQSAIAIAKNKSYNGK-NRHIQLRHNIVKQLLKDGTISINYVKSEGNLAD 866

Query: 898  PLTKGLSKRMILDSSSEMGLSP*MRSLTVGTQP 996
            PLTK L ++MI ++S  MGL P      + TQP
Sbjct: 867  PLTKPLGRKMIYETSRGMGLKPIENKQVMVTQP 899


>gb|ABF96702.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1518

 Score =  376 bits (965), Expect = e-115
 Identities = 182/320 (56%), Positives = 246/320 (76%), Gaps = 1/320 (0%)
 Frame = +1

Query: 7    VILCLYVDDILIFGTTLEVILKVKEYLSKNFDMKDLGPADMILGMKITRNNKGISLSLSH 186
            VILCLYVDDILIFGT LEVI +VK +LS+NFDMKDLG AD+IL +K+ R   GI+L  SH
Sbjct: 1198 VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSH 1257

Query: 187  SIHKMLHKFNFHDSKAVSTPYDSSISLKKNEGEPVSQLRYSQLIGSLLYISNRTRPDIAY 366
             + K+L++F + DSK   TPYD S+ L+KN+    +QL YSQ+IGSL+Y+++ TRPDI++
Sbjct: 1258 YVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISF 1317

Query: 367  AVGRLSRYTSNPSKEHWTALERVFKYLKGTVDYCLTYTGYPDAIEGYSDANWVTDSNSVK 546
            AV +LSR+TSNP  +HW ALERV +YLKGTV+  L YTGYP  +EGYSD+NW++D + +K
Sbjct: 1318 AVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIK 1377

Query: 547  STTGYVFLYGGAAVSWKSCKQTVIARSTMEAELIALDTTCTEAEWLKDLVSELPLVCKPV 726
            +T+GYVF  GG AVSW+SCKQT++ RSTMEAEL ALDT   EAEWL+DL+ +LP+V KPV
Sbjct: 1378 ATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPV 1437

Query: 727  PPISLHSDSRSTIELLKQVHVNKKLNRHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPL 903
            P I ++ D+++ I  +     N K +RH++ R KSV++L    V+ LD++++ +NLADP 
Sbjct: 1438 PAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPF 1497

Query: 904  TKGLSKRMILDSSSEMGLSP 963
            TKGLS+ +I ++S EMGL P
Sbjct: 1498 TKGLSRNVIDNASKEMGLRP 1517


>gb|ABF96953.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1197

 Score =  371 bits (953), Expect = e-115
 Identities = 180/320 (56%), Positives = 243/320 (75%), Gaps = 1/320 (0%)
 Frame = +1

Query: 7    VILCLYVDDILIFGTTLEVILKVKEYLSKNFDMKDLGPADMILGMKITRNNKGISLSLSH 186
            VILCLYVDDILIFGT LEVI +VK +LS+NFDMKDLG AD+IL +K+ R   GI+L  SH
Sbjct: 877  VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSH 936

Query: 187  SIHKMLHKFNFHDSKAVSTPYDSSISLKKNEGEPVSQLRYSQLIGSLLYISNRTRPDIAY 366
             + K+L++F + DSK   TPYD S+ L+KN+    +QL YSQ+IGSL+Y+++ TRPDI++
Sbjct: 937  YVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIAGNQLEYSQIIGSLMYLASATRPDISF 996

Query: 367  AVGRLSRYTSNPSKEHWTALERVFKYLKGTVDYCLTYTGYPDAIEGYSDANWVTDSNSVK 546
             V +LSR+TSNP  +HW ALERV  YLKGTV+  L YTGYP  +EGYSD+NW++D + +K
Sbjct: 997  VVSKLSRFTSNPGDDHWRALERVMCYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIK 1056

Query: 547  STTGYVFLYGGAAVSWKSCKQTVIARSTMEAELIALDTTCTEAEWLKDLVSELPLVCKPV 726
            +T+GYVF  GG AVSW+SCKQT++ RSTME EL ALDT   EAEWL+DL+ +LP+V KPV
Sbjct: 1057 ATSGYVFTLGGGAVSWRSCKQTILTRSTMEVELTALDTATVEAEWLRDLLMDLPVVEKPV 1116

Query: 727  PPISLHSDSRSTIELLKQVHVNKKLNRHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPL 903
            P I ++ D+++ I  +     N K +RH++ R KSV++L    V+ LD++++ +NLADP 
Sbjct: 1117 PAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPF 1176

Query: 904  TKGLSKRMILDSSSEMGLSP 963
            TKGLS+ +I ++S EMGL P
Sbjct: 1177 TKGLSRNVINNASKEMGLRP 1196