BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon23_contig00006169
         (735 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020691279.1| DNA-directed RNA polymerase III subunit RPC6...    59   1e-12
ref|XP_020574967.1| DNA-directed RNA polymerase III subunit RPC6...    57   6e-12
ref|XP_010927732.1| PREDICTED: DNA-directed RNA polymerase III s...    54   1e-09
ref|XP_020246712.1| DNA-directed RNA polymerase III subunit RPC6...    62   1e-09
ref|XP_008813399.1| PREDICTED: DNA-directed RNA polymerase III s...    53   6e-09
ref|XP_009404340.1| PREDICTED: DNA-directed RNA polymerase III s...    48   4e-07
ref|XP_009386152.1| PREDICTED: DNA-directed RNA polymerase III s...    49   7e-07
gb|OVA07786.1| RNA polymerase Rpc34 [Macleaya cordata]                 40   5e-06
gb|OVA19488.1| RNA polymerase Rpc34 [Macleaya cordata]                 39   9e-06
gb|PKA46474.1| hypothetical protein AXF42_Ash012607 [Apostasia s...    48   9e-06

>ref|XP_020691279.1| DNA-directed RNA polymerase III subunit RPC6 [Dendrobium catenatum]
 ref|XP_020691280.1| DNA-directed RNA polymerase III subunit RPC6 [Dendrobium catenatum]
 gb|PKU75411.1| hypothetical protein MA16_Dca020480 [Dendrobium catenatum]
          Length = 231

 Score = 58.5 bits (140), Expect(3) = 1e-12
 Identities = 31/70 (44%), Positives = 41/70 (58%)
 Frame = +1

Query: 268 KLQSSGVEEFSHVLAVRDCYRILKGREGPKESALVSLLVWELP*INECMPSRSTLLINSV 447
           +L SSGV +F H+ A R+CYR LKGR+GPKE    ++     P INEC P         V
Sbjct: 162 ELISSGVGDFFHIRAGRECYRSLKGRDGPKEGFFSAVPCGVCPRINECSPDGIISPNTCV 221

Query: 448 YYR*CLSVDF 477
           YY+  L +D+
Sbjct: 222 YYQKWLGLDY 231



 Score = 33.9 bits (76), Expect(3) = 1e-12
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = +3

Query: 96  FIKILGQQCMMHTLKLNVATGMGILVVIRESHVFNMEIS 212
           FI IL +QC +H  +L VAT   +   IR+S VF ++ S
Sbjct: 105 FITILRKQCRLHVERLKVATLENVWQFIRDSKVFYIDFS 143



 Score = 28.9 bits (63), Expect(3) = 1e-12
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +2

Query: 8   KSKKIFMTMKFNTSKEISG 64
           K+KKI+M ++F  SKEISG
Sbjct: 74  KAKKIYMAVEFEPSKEISG 92


>ref|XP_020574967.1| DNA-directed RNA polymerase III subunit RPC6 [Phalaenopsis
           equestris]
          Length = 282

 Score = 56.6 bits (135), Expect(3) = 6e-12
 Identities = 32/70 (45%), Positives = 40/70 (57%)
 Frame = +1

Query: 268 KLQSSGVEEFSHVLAVRDCYRILKGREGPKESALVSLLVWELP*INECMPSRSTLLINSV 447
           +L SSGV EFS++ A + CYR L+GR GPK   L S+     P INEC P         V
Sbjct: 213 ELISSGVGEFSNIQAGKKCYRSLRGRGGPKAGGLSSVPCGVCPRINECSPDGIISPKTCV 272

Query: 448 YYR*CLSVDF 477
           YY+  L +DF
Sbjct: 273 YYQKWLGLDF 282



 Score = 34.7 bits (78), Expect(3) = 6e-12
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +3

Query: 96  FIKILGQQCMMHTLKLNVATGMGILVVIRESHVFNMEIS 212
           FI+IL +QC MH  +L +A+   +   +R+S +F  E S
Sbjct: 156 FIRILREQCRMHVERLKIASVENVWKCVRDSGIFKTECS 194



 Score = 27.3 bits (59), Expect(3) = 6e-12
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 8   KSKKIFMTMKFNTSKEISG 64
           K++K FM ++F  SKEISG
Sbjct: 125 KARKFFMAVEFEPSKEISG 143


>ref|XP_010927732.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6 [Elaeis
           guineensis]
 ref|XP_010927733.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6 [Elaeis
           guineensis]
 ref|XP_010927734.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6 [Elaeis
           guineensis]
 ref|XP_010927735.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6 [Elaeis
           guineensis]
          Length = 237

 Score = 53.9 bits (128), Expect(2) = 1e-09
 Identities = 30/70 (42%), Positives = 41/70 (58%)
 Frame = +1

Query: 268 KLQSSGVEEFSHVLAVRDCYRILKGREGPKESALVSLLVWELP*INECMPSRSTLLINSV 447
           +L+S+G+ +FS V + + CY+ LKGREGPK  AL S+     P I EC P         V
Sbjct: 168 ELKSTGIGDFSKVPSGKICYKSLKGREGPKIGALSSIPCGVCPRIGECTPDGIISPKTCV 227

Query: 448 YYR*CLSVDF 477
           YY   LS++F
Sbjct: 228 YYNKWLSLEF 237



 Score = 37.7 bits (86), Expect(2) = 1e-09
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 15/106 (14%)
 Frame = +2

Query: 8   KSKKIFMTMKFNTSKEISGSVPWCGTQLSVHQNIR---------------ATMHDAYSET 142
           K++KI+M M+F  SKEISG   +    L + + IR               ATM   Y   
Sbjct: 80  KARKIYMAMEFEPSKEISGGSWYSDGSLDI-EFIRILREQCLKHIERLQIATMEAIYKSI 138

Query: 143 QCCHWHGDISGH*GVTCLQHGNLTL*QIVDLVNLIVLDKEVENCRA 280
           Q        S    V C      T+ QIV++VN +VLDKE+E  ++
Sbjct: 139 Q-------ESRVFKVEC------TMQQIVEIVNAMVLDKEIEELKS 171


>ref|XP_020246712.1| DNA-directed RNA polymerase III subunit RPC6 [Asparagus
           officinalis]
 ref|XP_020246713.1| DNA-directed RNA polymerase III subunit RPC6 [Asparagus
           officinalis]
 gb|ONK58492.1| uncharacterized protein A4U43_C09F13600 [Asparagus officinalis]
          Length = 231

 Score = 61.6 bits (148), Expect(2) = 1e-09
 Identities = 31/62 (50%), Positives = 38/62 (61%)
 Frame = +1

Query: 268 KLQSSGVEEFSHVLAVRDCYRILKGREGPKESALVSLLVWELP*INECMPSRSTLLINSV 447
           K++SSGV +FSHV   RDCYR+ +G  GPKE A  S+     P I+EC P      IN V
Sbjct: 161 KVRSSGVGDFSHVPEGRDCYRVSRGEGGPKEGAFASIPCGVCPRIHECTPDGVISPINCV 220

Query: 448 YY 453
           YY
Sbjct: 221 YY 222



 Score = 30.0 bits (66), Expect(2) = 1e-09
 Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 18/109 (16%)
 Frame = +2

Query: 8   KSKKIFMTMKFNTSKEISGSVPWCGTQLSVHQNIRATMHDAYSET--QCCHWHGDISGH* 181
           KS+K+ M ++F  S ++SG   +    L V          A+ +   Q C  H  +  H 
Sbjct: 68  KSRKMVMAVEFEPSADVSGGAWYQSGSLDV----------AFIKILRQQCRRH--VEEHK 115

Query: 182 GVTC----------------LQHGNLTL*QIVDLVNLIVLDKEVENCRA 280
             TC                +    +TL Q+ +++ L+VLDKEVE  R+
Sbjct: 116 VATCEMVRKAIKEPKRGRPPVFTTEITLQQVYEILELMVLDKEVEKVRS 164


>ref|XP_008813399.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6 [Phoenix
           dactylifera]
 ref|XP_008813400.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6 [Phoenix
           dactylifera]
          Length = 232

 Score = 52.8 bits (125), Expect(2) = 6e-09
 Identities = 28/70 (40%), Positives = 40/70 (57%)
 Frame = +1

Query: 268 KLQSSGVEEFSHVLAVRDCYRILKGREGPKESALVSLLVWELP*INECMPSRSTLLINSV 447
           +L+S+G+ +FS V + + CYR LKGREGPK  A  S+     P I+EC P         +
Sbjct: 163 ELKSTGIGDFSKVQSGKICYRSLKGREGPKVGAFSSIPCGVCPRISECTPDGIISPKTCI 222

Query: 448 YYR*CLSVDF 477
           YY   L ++F
Sbjct: 223 YYNKWLKLEF 232



 Score = 36.2 bits (82), Expect(2) = 6e-09
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = +3

Query: 96  FIKILGQQCMMHTLKLNVATGMGILVVIRESHVFNME 206
           FI+IL +QC+ H  +L VAT   I   I+ES VF +E
Sbjct: 106 FIRILREQCLKHIERLQVATMEAIYKSIQESRVFKVE 142


>ref|XP_009404340.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Musa
           acuminata subsp. malaccensis]
 ref|XP_018684305.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Musa
           acuminata subsp. malaccensis]
          Length = 237

 Score = 47.8 bits (112), Expect(2) = 4e-07
 Identities = 27/70 (38%), Positives = 39/70 (55%)
 Frame = +1

Query: 268 KLQSSGVEEFSHVLAVRDCYRILKGREGPKESALVSLLVWELP*INECMPSRSTLLINSV 447
           +L+S+GV EFS V + + CYR  +GR+GP    L S+     P I+EC P         V
Sbjct: 168 ELKSTGVAEFSMVQSGKICYRRSRGRQGPSVGHLSSIPCGMCPRISECTPEGVISPNTCV 227

Query: 448 YYR*CLSVDF 477
           YY+  L ++F
Sbjct: 228 YYKQWLKLEF 237



 Score = 35.0 bits (79), Expect(2) = 4e-07
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
 Frame = +2

Query: 8   KSKKIFMTMKFNTSKEISGSVPWCGTQLSVH-QNIRATMHDAYSETQCCHWHGDISGH*G 184
           KS+K FM ++F  SKE+SG   +    L     NI   M   + E        DI     
Sbjct: 80  KSRKTFMAVEFEPSKEVSGGSWYSDGSLDTEFINILRMMCLKHIEDLRIATIEDIHKCIA 139

Query: 185 VTCLQHGNLTL*QIVDLVNLIVLDKEVENCRA 280
            + +     T+ Q++++V  + LDKE+E  ++
Sbjct: 140 ASRIMKVECTMQQVLEIVRALALDKEIEELKS 171


>ref|XP_009386152.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Musa
           acuminata subsp. malaccensis]
 ref|XP_009386160.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Musa
           acuminata subsp. malaccensis]
          Length = 237

 Score = 48.5 bits (114), Expect(2) = 7e-07
 Identities = 28/70 (40%), Positives = 38/70 (54%)
 Frame = +1

Query: 268 KLQSSGVEEFSHVLAVRDCYRILKGREGPKESALVSLLVWELP*INECMPSRSTLLINSV 447
           +L+S+GV EFS V   + CYR L+GRE P+   L S+     P I+EC P         V
Sbjct: 168 ELKSTGVGEFSTVQTGKVCYRSLRGREAPRVGHLSSIPCGVCPRISECTPDGVISPKTCV 227

Query: 448 YYR*CLSVDF 477
           YY   L ++F
Sbjct: 228 YYNKWLKLEF 237



 Score = 33.5 bits (75), Expect(2) = 7e-07
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
 Frame = +2

Query: 8   KSKKIFMTMKFNTSKEISGSVPWCGTQLSVH-QNIRATMHDAYSETQCCHWHGDISGH*G 184
           K++KIFM ++F  SKE+SG   +    L     NI   M   + E        DI     
Sbjct: 80  KARKIFMAVEFEPSKEVSGGSWYSEGSLDTEFINILRKMCLKHIEELKVATIEDIWKSIS 139

Query: 185 VTCLQHGNLTL*QIVDLVNLIVLDKEVENCRA 280
            + +     T+ Q++++V  + LDKE+E  ++
Sbjct: 140 ASGVLKVACTMQQVLEIVRALALDKEIEELKS 171


>gb|OVA07786.1| RNA polymerase Rpc34 [Macleaya cordata]
          Length = 236

 Score = 39.7 bits (91), Expect(2) = 5e-06
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +1

Query: 268 KLQSSGVEEFSHVLAVRDCYRILKGREGPKESALVSLLVWELP*INECMPSRSTLLINSV 447
           KL S+G  +F+H+    +CYR       P+  A+ S+     P IN+C P         V
Sbjct: 169 KLSSTGTGDFTHIPVGTECYRCSNKGGVPRTGAMASIPCGVCPRINDCTPDGIISPTTCV 228

Query: 448 YYR 456
           YY+
Sbjct: 229 YYK 231



 Score = 39.3 bits (90), Expect(2) = 5e-06
 Identities = 20/37 (54%), Positives = 25/37 (67%)
 Frame = +3

Query: 96  FIKILGQQCMMHTLKLNVATGMGILVVIRESHVFNME 206
           FI+IL +QCM H  KL VAT  GI   IR+S +F +E
Sbjct: 112 FIQILKEQCMKHIYKLKVATVEGITESIRKSGLFKVE 148


>gb|OVA19488.1| RNA polymerase Rpc34 [Macleaya cordata]
          Length = 236

 Score = 39.3 bits (90), Expect(2) = 9e-06
 Identities = 20/37 (54%), Positives = 25/37 (67%)
 Frame = +3

Query: 96  FIKILGQQCMMHTLKLNVATGMGILVVIRESHVFNME 206
           FI+IL +QCM H  KL VAT  GI   IR+S +F +E
Sbjct: 112 FIQILKEQCMKHIYKLKVATVEGITESIRKSGLFKVE 148



 Score = 38.9 bits (89), Expect(2) = 9e-06
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +1

Query: 268 KLQSSGVEEFSHVLAVRDCYRILKGREGPKESALVSLLVWELP*INECMPSRSTLLINSV 447
           K+ S+G  +F+H+    +CYR       P+  A+ S+     P IN+C P         V
Sbjct: 169 KISSTGTGDFTHIPVGTECYRCSNKGGVPRTGAMASIPCGVCPRINDCTPDGIISPTTCV 228

Query: 448 YYR 456
           YY+
Sbjct: 229 YYK 231


>gb|PKA46474.1| hypothetical protein AXF42_Ash012607 [Apostasia shenzhenica]
          Length = 230

 Score = 48.1 bits (113), Expect(2) = 9e-06
 Identities = 26/70 (37%), Positives = 37/70 (52%)
 Frame = +1

Query: 268 KLQSSGVEEFSHVLAVRDCYRILKGREGPKESALVSLLVWELP*INECMPSRSTLLINSV 447
           +L SSGV + SH+ A R CYR  +GR G  + +  S+     P I EC+P         V
Sbjct: 161 ELNSSGVGDSSHIPAGRKCYRSSRGRAGSNDGSFASIPCGVCPRIYECIPDGVISPETCV 220

Query: 448 YYR*CLSVDF 477
           YY+  L ++F
Sbjct: 221 YYQKWLDIEF 230



 Score = 30.0 bits (66), Expect(2) = 9e-06
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 87  NFPFIKILGQQCMMHTLKLNVATGMGILVVIRESHVFNME 206
           +F FI +L  QC+ H  +  VAT   +   IR+S VF  E
Sbjct: 101 DFEFINVLRGQCLRHIERHKVATVEIVWQCIRDSGVFTTE 140