BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon22_contig00039857
         (760 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AVA17449.1| RNA-dependent RNA polymerase [Gigaspora margarita...   124   1e-28
gb|ALD89126.1| RNA-dependent RNA polymerase, partial [Rhizoctoni...    79   8e-13
ref|YP_005352912.1| RNA dependent RNA polymerase [Clitocybe odor...    78   1e-12
gb|AGT55876.1| RNA-dependent RNA polymerase [Ophiostoma mitoviru...    77   2e-12
gb|ALD89117.1| RNA-dependent RNA polymerase [Rhizoctonia solani ...    76   4e-12
gb|ALD89119.1| RNA-dependent RNA polymerase, partial [Rhizoctoni...    75   9e-12
gb|ALD89128.1| RNA-dependent RNA polymerase, partial [Rhizoctoni...    70   6e-10
gb|AMM45292.1| putative replicase [Macrophomina phaseolina mitov...    69   1e-09
emb|CAJ32467.1| RNA-dependent RNA polymerase [Ophiostoma mitovir...    69   2e-09
emb|CAJ32466.1| RNA-dependent RNA polymerase [Ophiostoma mitovir...    68   3e-09
gb|ALD89120.1| RNA-dependent RNA polymerase [Rhizoctonia solani ...    63   2e-07
ref|YP_004564622.1| RNA-dependent RNA polymerase [Tuber aestivum...    62   4e-07
gb|ALD89115.1| RNA-dependent RNA polymerase, partial [Rhizoctoni...    60   8e-07
gb|ALM62240.1| RNA-dependent RNA polymerase [Soybean leaf-associ...    59   2e-06

>gb|AVA17449.1| RNA-dependent RNA polymerase [Gigaspora margarita mitovirus 1]
          Length = 794

 Score =  124 bits (312), Expect = 1e-28
 Identities = 63/158 (39%), Positives = 100/158 (63%)
 Frame = +3

Query: 36  RPSVKAWRDWLRPGISWVRVVLGCVNRSAVIQIYVFIQAVARLGRKSGLKGLTVYLKTCH 215
           R +VK W       +S  R+V+G ++R  +  +  + +    + RK G+KG  ++LKT +
Sbjct: 25  RLNVKVWHHLFPALVSVGRLVIGRISRDRIKVLAFWAKQCVAMIRKQGVKGTCLWLKTIN 84

Query: 216 VLLMQSVPGTKIHASSRAIGKVGVARTHDGYPRLIPRLARDRLRRGHVGTLRLWLTLFGV 395
           VL+M S+PG+++ + SRAI KV V+ + DG PR+IP+  R  +R G   T+RLWL+L G+
Sbjct: 85  VLIMASLPGSQLKSQSRAISKVAVSVSRDGLPRVIPKQDRRAIRAGDTNTIRLWLSLSGM 144

Query: 396 YRVIEYTGRATLSTITEPGTNLNARDRKVFVTFLREIF 509
           YRV+E+ G+A +STIT+PG  ++      F TFL+  F
Sbjct: 145 YRVLEFPGKAKISTITDPGPRISPPLLSFFETFLKREF 182


>gb|ALD89126.1| RNA-dependent RNA polymerase, partial [Rhizoctonia solani mitovirus
           7]
          Length = 871

 Score = 78.6 bits (192), Expect = 8e-13
 Identities = 54/144 (37%), Positives = 76/144 (52%), Gaps = 4/144 (2%)
 Frame = +3

Query: 42  SVKAWRDWLRPGISWVRVVLGCVNRSAVIQIYVFIQAVARLGRKSGLKGLTVYLKTCHVL 221
           SVK  R  +R  +  + +       + V  I VF++  + L R +G KG  + LK   V+
Sbjct: 4   SVKGGRALVRYFVRMLPITGLQTTSARVRAIVVFLKLTSILFRNNGAKGACLILKVHAVI 63

Query: 222 LMQSVPGTKIHASSRAIGKVGVARTHDGYPRLIPRLARDRLRRGHVGTLRLWLTLFGVYR 401
           L Q+  G  +   +    K  V+RT+ G PR IP   R+ +R GH+ T+RLWLTLF +YR
Sbjct: 64  LQQACGGHIVKDLTEL--KFRVSRTNRGLPRAIPVQHRELIRSGHLETIRLWLTLFNLYR 121

Query: 402 VIEYTGRATLS----TITEPGTNL 461
           VIE+ G   LS    TIT P   L
Sbjct: 122 VIEFDGDYRLSSLSKTITSPAKTL 145


>ref|YP_005352912.1| RNA dependent RNA polymerase [Clitocybe odora virus]
 emb|CCG47524.1| RNA dependent RNA polymerase [Clitocybe odora virus]
          Length = 1136

 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 40/98 (40%), Positives = 60/98 (61%)
 Frame = +3

Query: 156 ARLGRKSGLKGLTVYLKTCHVLLMQSVPGTKIHASSRAIGKVGVARTHDGYPRLIPRLAR 335
           +R+ +  G+ GL  YLK C VL  QS+ G K+   S       V+RT+ G PR++P   R
Sbjct: 103 SRIAKCQGIVGLVKYLKACSVLTQQSISGFKVDNFSPR-----VSRTNSGIPRILPVHCR 157

Query: 336 DRLRRGHVGTLRLWLTLFGVYRVIEYTGRATLSTITEP 449
             +R+GH+  +RL LT+F ++RV+ Y G+  +STIT P
Sbjct: 158 RMIRQGHLVYMRLSLTIFSLFRVMRYPGKMKISTITAP 195


>gb|AGT55876.1| RNA-dependent RNA polymerase [Ophiostoma mitovirus 1c]
          Length = 788

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 13/181 (7%)
 Frame = +3

Query: 72  PGISWVRVVLGCVNRSAVIQIYVFIQAVARLGRKSGLKGLTVYLKTCHVLLMQSVPGTKI 251
           P +  +R+V GC++   +  ++VF++  + L +  GLK + +Y K CH+  MQ V    +
Sbjct: 18  PLLQVIRLVRGCLSPDLIKAVFVFVKRSSSLQKTGGLKFVALYYKACHIYTMQFVASGGV 77

Query: 252 HAS---SRAIGKVGVARTHDGYPRLIPRLARDRLRRGHVGTLRLWLTLFGVYRVIEYTGR 422
             S   S   G V V+ T  G PR++P   R  +   +   +++ LTLF +YRV+ Y G+
Sbjct: 78  RQSFITSTCYG-VNVSLTSGGLPRILPIYLRRLVTSQNKEGIKIVLTLFNLYRVLPYPGK 136

Query: 423 ATLSTITEPGTNLNARDRKVFVTFLREIFL---------PLLEARTSW-VPEDGLMGGFG 572
             LSTIT+  +     D    ++F+ + +L         P    R+ + +   G + GFG
Sbjct: 137 VKLSTITDKWSGSYPLD---MISFIPKFWLLLRSQGKIAPFTFIRSPFAISASGSITGFG 193

Query: 573 K 575
           K
Sbjct: 194 K 194


>gb|ALD89117.1| RNA-dependent RNA polymerase [Rhizoctonia solani mitovirus 12]
          Length = 746

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 7/136 (5%)
 Frame = +3

Query: 69  RPGISWV----RVVLGCVNRSAVIQIYVFIQAVARLGRKSGLKGLTVYLKTCHVLLMQSV 236
           RP ++W     R++ G ++   V    VF+    RL + SGLK L +YLK  +V LMQ++
Sbjct: 8   RPLVNWFIKAFRLMEGRLSNGTVRVTIVFLSKCYRLQKMSGLKFLVIYLKAQNVNLMQAL 67

Query: 237 PGTKIHASSRAIGKVG---VARTHDGYPRLIPRLARDRLRRGHVGTLRLWLTLFGVYRVI 407
            GT    + + I  +G     +     P++IP L R  +R G V  ++LW TLF +YRV+
Sbjct: 68  AGT----AGKDITNLGCRFARKRGSKLPQIIPILHRVHIRNGKVYYIKLWTTLFNLYRVL 123

Query: 408 EYTGRATLSTITEPGT 455
            + G   LSTI +P +
Sbjct: 124 SFPGLLNLSTIVDPSS 139


>gb|ALD89119.1| RNA-dependent RNA polymerase, partial [Rhizoctonia solani mitovirus
           14]
          Length = 1024

 Score = 75.5 bits (184), Expect = 9e-12
 Identities = 46/137 (33%), Positives = 78/137 (56%), Gaps = 7/137 (5%)
 Frame = +3

Query: 66  LRPGISWVRVVLGC-------VNRSAVIQIYVFIQAVARLGRKSGLKGLTVYLKTCHVLL 224
           ++ G+ WV  V+         V    V  I V ++  +++G+  G++GL +YLK CHVLL
Sbjct: 177 VKGGVWWVNKVVRLLPSIGLSVTGPRVRAIVVILRKFSKIGQTQGIRGLVIYLKACHVLL 236

Query: 225 MQSVPGTKIHASSRAIGKVGVARTHDGYPRLIPRLARDRLRRGHVGTLRLWLTLFGVYRV 404
            QS  G  I   + ++G V V+RT+ G PR+I    R ++R  +   ++ + TLFG+YR+
Sbjct: 237 TQSCAGHMI-KDTGSLG-VRVSRTNTGMPRVILVQDRIKIRGDNHLLIKFYQTLFGLYRI 294

Query: 405 IEYTGRATLSTITEPGT 455
           + + G+  L++IT   T
Sbjct: 295 LSFEGKLKLNSITSSFT 311


>gb|ALD89128.1| RNA-dependent RNA polymerase, partial [Rhizoctonia solani mitovirus
           9]
          Length = 524

 Score = 69.7 bits (169), Expect = 6e-10
 Identities = 48/146 (32%), Positives = 73/146 (50%)
 Frame = +3

Query: 9   KVRLLQKRWRPSVKAWRDWLRPGISWVRVVLGCVNRSAVIQIYVFIQAVARLGRKSGLKG 188
           KV L       SVK     +R  +  +  +     R+ V  I VF++   RL + +G KG
Sbjct: 13  KVHLKNINAMASVKGGNSLVRIAVMLIPAIGIRSTRAKVRCIIVFLRHTYRLFKYNGAKG 72

Query: 189 LTVYLKTCHVLLMQSVPGTKIHASSRAIGKVGVARTHDGYPRLIPRLARDRLRRGHVGTL 368
             + LK   V L QS+ G K+   +    K  V+RT+ G PR+IP   R  +R G    +
Sbjct: 73  ACLILKVYAVTLQQSIGGHKVKDLTEL--KFRVSRTNGGIPRVIPVELRKAIRAGDTKVI 130

Query: 369 RLWLTLFGVYRVIEYTGRATLSTITE 446
           R +L+LF  YR+IE+ G   L ++T+
Sbjct: 131 RFYLSLFNFYRMIEFKGDMRLVSLTK 156


>gb|AMM45292.1| putative replicase [Macrophomina phaseolina mitovirus 3]
          Length = 1029

 Score = 69.3 bits (168), Expect = 1e-09
 Identities = 44/117 (37%), Positives = 64/117 (54%)
 Frame = +3

Query: 117 SAVIQIYVFIQAVARLGRKSGLKGLTVYLKTCHVLLMQSVPGTKIHASSRAIGKVGVART 296
           S V Q+  F +  + +    G KGLT++LK+  V+L QS+ G   H S   +G   V+RT
Sbjct: 212 STVRQLLTFARVCSHILETQGPKGLTLFLKSSTVMLQQSLGGHVTH-SLTPLGP-RVSRT 269

Query: 297 HDGYPRLIPRLARDRLRRGHVGTLRLWLTLFGVYRVIEYTGRATLSTITEPGTNLNA 467
             G PR      R R+R G    +RL LTL  +YRVI+Y G+ + +TI +  T  N+
Sbjct: 270 KAGLPRFFNVTYRMRIRNGETAAIRLALTLVNLYRVIKYPGKLSWNTIIKANTGDNS 326


>emb|CAJ32467.1| RNA-dependent RNA polymerase [Ophiostoma mitovirus 1b]
          Length = 776

 Score = 68.6 bits (166), Expect = 2e-09
 Identities = 41/120 (34%), Positives = 65/120 (54%)
 Frame = +3

Query: 87  VRVVLGCVNRSAVIQIYVFIQAVARLGRKSGLKGLTVYLKTCHVLLMQSVPGTKIHASSR 266
           +++V G    S +   YV +  +  L  KSGL     Y+K C + +M+ V       +  
Sbjct: 25  LKLVWGGTTISKLKSFYVLLVHLKTLQEKSGLAYTCQYMKACAIYVMKYVAKDPNKLAIN 84

Query: 267 AIGKVGVARTHDGYPRLIPRLARDRLRRGHVGTLRLWLTLFGVYRVIEYTGRATLSTITE 446
           +   + V+ T  G PR+IP   R +LRRG+  +++  LT+F +YRV+EY G   LSTIT+
Sbjct: 85  SFS-ILVSLTDSGIPRIIPSYIRYQLRRGNKNSIKALLTVFNLYRVLEYPGVLKLSTITD 143


>emb|CAJ32466.1| RNA-dependent RNA polymerase [Ophiostoma mitovirus 1a]
          Length = 782

 Score = 67.8 bits (164), Expect = 3e-09
 Identities = 37/125 (29%), Positives = 68/125 (54%)
 Frame = +3

Query: 87  VRVVLGCVNRSAVIQIYVFIQAVARLGRKSGLKGLTVYLKTCHVLLMQSVPGTKIHASSR 266
           +R+V G    + +   YV +  +  + + +GL  L  Y+K C + LM++V          
Sbjct: 25  LRLVWGDTTLNKIRAFYVLLLRLEFIRKHNGLPYLCGYMKACGIFLMKTVGKDPSKLDLT 84

Query: 267 AIGKVGVARTHDGYPRLIPRLARDRLRRGHVGTLRLWLTLFGVYRVIEYTGRATLSTITE 446
           ++G + V+ T  G PR+IP   R+R+R   +  ++  LT+F +YRV+++ G   L+TIT+
Sbjct: 85  SLG-IWVSLTGSGIPRIIPSYIRNRIRSHDLKLVKSVLTVFNLYRVLDFAGSLNLATITD 143

Query: 447 PGTNL 461
           P   +
Sbjct: 144 PSDGI 148


>gb|ALD89120.1| RNA-dependent RNA polymerase [Rhizoctonia solani mitovirus 15]
          Length = 961

 Score = 62.8 bits (151), Expect = 2e-07
 Identities = 34/104 (32%), Positives = 55/104 (52%)
 Frame = +3

Query: 132 IYVFIQAVARLGRKSGLKGLTVYLKTCHVLLMQSVPGTKIHASSRAIGKVGVARTHDGYP 311
           I +F+Q    + +  G+KGL  YLK   VL  Q + G +++  +    K   AR   G P
Sbjct: 195 ILIFLQFAKHIHKSQGMKGLVNYLKASQVLFQQHLGGFRLYDCTDL--KTRPARNKAGMP 252

Query: 312 RLIPRLARDRLRRGHVGTLRLWLTLFGVYRVIEYTGRATLSTIT 443
           +++    R  +R G     + ++TLF +YRV+E+ G+  L TIT
Sbjct: 253 KIVRPQDRALIRAGDWRVAKFYMTLFSLYRVLEFPGKLKLETIT 296


>ref|YP_004564622.1| RNA-dependent RNA polymerase [Tuber aestivum mitovirus]
 gb|AEG79311.1| RNA-dependent RNA polymerase [Tuber aestivum mitovirus]
          Length = 793

 Score = 61.6 bits (148), Expect = 4e-07
 Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 5/180 (2%)
 Frame = +3

Query: 66  LRPGISWVRVVLGCVNRSAVIQIYVFIQAVARLGRKSGLKGLTVYLKTCHVLLMQSVPGT 245
           + P I    +++G   +  +I +Y  +Q + ++    G +GL + LK     LM+S  G 
Sbjct: 2   MNPFIRLGSLLMGKTTKELIIGLYSCVQTLHKIYLSQGSRGLAIRLKASSTYLMKSWSGD 61

Query: 246 KIHASSRAIGKVGVARTHDGYPRLIPRLARDRLRRGHVGTLRLWLTLFGVYRVIEYTGRA 425
            +    +A G   ++ T  G P  IP   R ++   ++   R+ +TL  +YRV+ Y G+ 
Sbjct: 62  PL-LDCKAFGPT-MSLTPRGIPIWIPSAWRCQISSRNLAIFRVTMTLCNLYRVLPYQGKL 119

Query: 426 TLSTITEPGTNLNARDRK-----VFVTFLREIFLPLLEARTSWVPEDGLMGGFGKPYCDR 590
            LSTIT+        DRK     +  +F+++ F P +   T+ VP  G+     KP   R
Sbjct: 120 KLSTITD--------DRKGSTPDLMFSFIKDKFAPNI---TNRVPYPGIFSWDPKPLLTR 168


>gb|ALD89115.1| RNA-dependent RNA polymerase, partial [Rhizoctonia solani mitovirus
           1]
          Length = 523

 Score = 60.5 bits (145), Expect = 8e-07
 Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
 Frame = +3

Query: 117 SAVIQIYVFIQAVARLGRKSGLKGLTVYLKTCHVLLMQSVPGTKIHASSRAIGKVGVART 296
           S + Q+Y F+  +  + R  G   +  YLKT  + + +++ GTK+ +  +    +     
Sbjct: 226 SRMRQLYAFLVHLQNMKRNHGSTYVVKYLKTSQLAIQKAIAGTKVLSLRQLDDSLPFPYL 285

Query: 297 HD-GYPRLIPRLARDR---LRRGHVGTLRLWLTLFGVYRVIEYTGRATLSTITEPGTNL 461
              G PR IP   RDR   L  G    +R WLTL+ VYRV+   G+  L TIT+P T L
Sbjct: 286 ATCGLPRFIP--IRDRQLMLVNGSPSVIRWWLTLYSVYRVLSIPGKLKLETITDPMTVL 342


>gb|ALM62240.1| RNA-dependent RNA polymerase [Soybean leaf-associated mitovirus 5]
          Length = 783

 Score = 59.3 bits (142), Expect = 2e-06
 Identities = 30/103 (29%), Positives = 54/103 (52%)
 Frame = +3

Query: 141 FIQAVARLGRKSGLKGLTVYLKTCHVLLMQSVPGTKIHASSRAIGKVGVARTHDGYPRLI 320
           FIQ + ++ +  G      +LK+C V L + +   K+         + + R  +G P +I
Sbjct: 59  FIQFIIKMNKNHGATFTVKWLKSCTVALQKWLGNDKVLTLRELEPNLPLPRVINGCPAII 118

Query: 321 PRLARDRLRRGHVGTLRLWLTLFGVYRVIEYTGRATLSTITEP 449
               R  +R G++  +R W +LF +YRV++  G+  +STIT+P
Sbjct: 119 NSGDRQLMRLGNINIIRFWHSLFSLYRVLQIPGKMKISTITDP 161