BLASTX nr result
ID: Ophiopogon22_contig00038856
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon22_contig00038856
(481 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposo... 49 3e-14
ref|WP_105280125.1| hypothetical protein [Escherichia coli] >gi|... 46 5e-13
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711... 44 3e-11
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 44 4e-10
ref|XP_015638684.1| PREDICTED: uncharacterized protein LOC107281... 44 4e-10
emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa Japonica Group] 41 4e-10
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 44 2e-09
gb|PRQ16639.1| putative RNA-directed DNA polymerase [Rosa chinen... 45 2e-09
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 41 3e-09
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 41 3e-09
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 41 3e-09
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 41 3e-09
emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group] 44 3e-09
gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subc... 44 4e-09
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 45 4e-09
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa] 41 5e-09
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 44 5e-09
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 44 5e-09
emb|CAN63660.1| hypothetical protein VITISV_008416 [Vitis vinifera] 46 6e-09
gb|ASR75372.1| retrotransposon protein [Oryza nivara] 41 6e-09
>gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 1032
Score = 48.5 bits (114), Expect(3) = 3e-14
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = -2
Query: 105 IFI*QPMGFKAAGKEGMAC*LRKSIYSLK*SPRRW 1
I++ QP GFK AGKE M C L KS+Y LK SPR+W
Sbjct: 705 IYMTQPEGFKVAGKENMFCKLEKSLYGLKQSPRQW 739
Score = 40.4 bits (93), Expect(3) = 3e-14
Identities = 26/54 (48%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -1
Query: 250 REGIYYNEVFSSVVNXXXXXXXXXXXXXXXXXLH*LDVKTTFLHDDL-EDIYMT 92
+EGI YNEVFS VV L +DVKT FLH DL E+IYMT
Sbjct: 655 KEGIDYNEVFSPVVKHSSIRVLLALVAQLDMELVQMDVKTAFLHGDLEEEIYMT 708
Score = 36.6 bits (83), Expect(3) = 3e-14
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = -3
Query: 458 TPTFRKVKSSESEMWKNVIHEKMYSLEEHLGTKLSXXXXXXXXXXXXXKDE-----SPST 294
T VK SE + W++ + E+M SL + KL+ S +
Sbjct: 580 TTYIEAVKGSEEDKWRSAMSEEMESLRRNQTWKLANLPKGKKAIGCKWVYAKKDGFSDKS 639
Query: 293 GVRYKAKLVAKGNAQR 246
VRYKA+LVAKG AQ+
Sbjct: 640 EVRYKARLVAKGYAQK 655
>ref|WP_105280125.1| hypothetical protein [Escherichia coli]
gb|PPY92707.1| hypothetical protein C5P31_25810 [Escherichia coli]
Length = 324
Score = 46.2 bits (108), Expect(3) = 5e-13
Identities = 21/35 (60%), Positives = 25/35 (71%)
Frame = -2
Query: 105 IFI*QPMGFKAAGKEGMAC*LRKSIYSLK*SPRRW 1
I++ QP GFK AGKE M C L KS+Y LK S R+W
Sbjct: 236 IYMTQPEGFKVAGKENMVCKLEKSLYGLKQSSRQW 270
Score = 38.5 bits (88), Expect(3) = 5e-13
Identities = 25/54 (46%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -1
Query: 250 REGIYYNEVFSSVVNXXXXXXXXXXXXXXXXXLH*LDVKTTFLHDDL-EDIYMT 92
+EGI YNEVFS VV L +DVKT FLH +L E+IYMT
Sbjct: 186 KEGIDYNEVFSPVVKHSSIRIMLALVAQLDLELVQMDVKTAFLHGNLEEEIYMT 239
Score = 36.6 bits (83), Expect(3) = 5e-13
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Frame = -3
Query: 470 VVENTPTFRK--VKSSESEMWKNVIHEKMYSLEEHLGTKLSXXXXXXXXXXXXXKDESPS 297
V ++ PT K V+SSE + W+ ++E+M SL ++ KL+
Sbjct: 105 VADDVPTTYKDAVQSSEEDKWRIAMNEEMQSLYQNHTWKLANLPKGKKAIGCKWVFAKKE 164
Query: 296 -----TGVRYKAKLVAKGNAQR 246
VRYKA+LVAKG AQ+
Sbjct: 165 GFPNQVDVRYKARLVAKGYAQK 186
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 43.5 bits (101), Expect(3) = 3e-11
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -2
Query: 105 IFI*QPMGFKAAGKEGMAC*LRKSIYSLK*SPRRW 1
I++ QP GF+ GKE C L+KS+Y LK SPR+W
Sbjct: 917 IYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQW 951
Score = 41.2 bits (95), Expect(3) = 3e-11
Identities = 25/54 (46%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -1
Query: 250 REGIYYNEVFSSVVNXXXXXXXXXXXXXXXXXLH*LDVKTTFLHDDL-EDIYMT 92
REG+ YNE+FS VV L LDVKT FLH +L E+IYMT
Sbjct: 867 REGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT 920
Score = 30.4 bits (67), Expect(3) = 3e-11
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Frame = -3
Query: 473 EVVENTPTFRK--VKSSESEMWKNVIHEKMYSLEEHLGTKLSXXXXXXXXXXXXXKDE-- 306
EV + P+ K + SS+SE W + ++M SL ++ L +
Sbjct: 785 EVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKK 844
Query: 305 ---SPSTGVRYKAKLVAKGNAQR 246
SP+ GV+YKA++VA+G QR
Sbjct: 845 EGISPAEGVKYKARVVARGFNQR 867
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 44.3 bits (103), Expect(3) = 4e-10
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -2
Query: 105 IFI*QPMGFKAAGKEGMAC*LRKSIYSLK*SPRRW 1
I++ QP GF GKE + C L+KS+Y LK SPR+W
Sbjct: 851 IYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQW 885
Score = 34.3 bits (77), Expect(3) = 4e-10
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 244 GIYYNEVFSSVVNXXXXXXXXXXXXXXXXXLH*LDVKTTFLHDDL-EDIYM 95
GI +N+VFS VV L +DVKT FLH +L EDIYM
Sbjct: 803 GIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYM 853
Score = 32.7 bits (73), Expect(3) = 4e-10
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Frame = -3
Query: 440 VKSSESEMWKNVIHEKMYSLEEHLGTKLSXXXXXXXXXXXXXKDE-----SPSTGVRYKA 276
+ S + W +H++M SLE++ +L + SPS RYKA
Sbjct: 732 IVSDDCNRWITAMHDEMESLEKNHSWELEKLPKEKKPIRCKWIFKRKEGMSPSDEARYKA 791
Query: 275 KLVAKGNAQ 249
+LVAKG +Q
Sbjct: 792 RLVAKGYSQ 800
>ref|XP_015638684.1| PREDICTED: uncharacterized protein LOC107281003 [Oryza sativa
Japonica Group]
Length = 651
Score = 44.3 bits (103), Expect(3) = 4e-10
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -2
Query: 105 IFI*QPMGFKAAGKEGMAC*LRKSIYSLK*SPRRW 1
I++ QP GF GKE + C L+KS+Y LK SPR+W
Sbjct: 503 IYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQW 537
Score = 34.3 bits (77), Expect(3) = 4e-10
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 244 GIYYNEVFSSVVNXXXXXXXXXXXXXXXXXLH*LDVKTTFLHDDL-EDIYM 95
GI +N+VFS VV L +DVKT FLH +L EDIYM
Sbjct: 455 GIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYM 505
Score = 32.7 bits (73), Expect(3) = 4e-10
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Frame = -3
Query: 440 VKSSESEMWKNVIHEKMYSLEEHLGTKLSXXXXXXXXXXXXXKDE-----SPSTGVRYKA 276
+ S + W +H++M SLE++ +L + SPS RYKA
Sbjct: 384 IVSDDCNRWITAMHDEMESLEKNHSWELEKLPKEKKPIRCKWIFKRKEGMSPSDEARYKA 443
Query: 275 KLVAKGNAQ 249
+LVAKG +Q
Sbjct: 444 RLVAKGYSQ 452
>emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa Japonica Group]
Length = 576
Score = 41.2 bits (95), Expect(3) = 4e-10
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = -2
Query: 105 IFI*QPMGFKAAGKEGMAC*LRKSIYSLK*SPRRW 1
I++ QP GF GKE C L++S+Y LK SPR+W
Sbjct: 265 IYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQW 299
Score = 37.7 bits (86), Expect(3) = 4e-10
Identities = 24/51 (47%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 244 GIYYNEVFSSVVNXXXXXXXXXXXXXXXXXLH*LDVKTTFLHDDLED-IYM 95
G+ YN+VFS VV L LDVKTTFLH +LED IYM
Sbjct: 217 GVDYNDVFSPVVKHSSIRTFFSIVAMDDLELKQLDVKTTFLHGELEDEIYM 267
Score = 32.3 bits (72), Expect(3) = 4e-10
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Frame = -3
Query: 476 MEVVENT---PTFRK-VKSSESEMWKNVIHEKMYSLEEHLGTKLSXXXXXXXXXXXXXKD 309
+E VENT T+ + V S + E W + + E+M SLE++ KL
Sbjct: 130 VEQVENTLEPATYTEAVVSGDRENWISAMQEEMQSLEKNGTWKLVHLPKQKKPVHCKWIF 189
Query: 308 E-----SPSTGVRYKAKLVAKGNAQ 249
+ SPS R+KA+LVAKG +Q
Sbjct: 190 KRKEGLSPSEPPRFKARLVAKGFSQ 214
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 44.3 bits (103), Expect(3) = 2e-09
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -2
Query: 105 IFI*QPMGFKAAGKEGMAC*LRKSIYSLK*SPRRW 1
I++ QP GF GKE + C L+KS+Y LK SPR+W
Sbjct: 914 IYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQW 948
Score = 32.3 bits (72), Expect(3) = 2e-09
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 244 GIYYNEVFSSVVNXXXXXXXXXXXXXXXXXLH*LDVKTTFLHDDL-EDIYM 95
GI +N+VFS VV L ++VKT FLH +L EDIYM
Sbjct: 866 GIDFNDVFSPVVKHSSIRTLLGIVAMHDYELEQMNVKTAFLHGELEEDIYM 916
Score = 32.0 bits (71), Expect(3) = 2e-09
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = -3
Query: 440 VKSSESEMWKNVIHEKMYSLEEHLG---TKLSXXXXXXXXXXXXXKDE--SPSTGVRYKA 276
+ S + W +H++M SLE++ KL + E SPS RYKA
Sbjct: 795 IVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKA 854
Query: 275 KLVAKGNAQ 249
+LVAKG +Q
Sbjct: 855 RLVAKGYSQ 863
>gb|PRQ16639.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 502
Score = 45.1 bits (105), Expect(3) = 2e-09
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = -2
Query: 105 IFI*QPMGFKAAGKEGMAC*LRKSIYSLK*SPRRW 1
I++ QP GF GKE + C LRKS+Y LK SPR+W
Sbjct: 108 IYMSQPEGFVETGKEDLVCRLRKSLYGLKQSPRQW 142
Score = 38.9 bits (89), Expect(3) = 2e-09
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -1
Query: 250 REGIYYNEVFSSVVNXXXXXXXXXXXXXXXXXLH*LDVKTTFLHDDL-EDIYMT 92
+EG+ Y+E+FS VV + +DVKT FLH DL EDIYM+
Sbjct: 58 KEGVDYDEIFSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMS 111
Score = 24.6 bits (52), Expect(3) = 2e-09
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = -3
Query: 290 VRYKAKLVAKGNAQR 246
++YKA+LVAKG +Q+
Sbjct: 44 IKYKARLVAKGYSQK 58
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
gb|ABA92739.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1373
Score = 40.8 bits (94), Expect(3) = 3e-09
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = -2
Query: 105 IFI*QPMGFKAAGKEGMAC*LRKSIYSLK*SPRRW 1
I++ QP GF GKE C L++S+Y LK SPR+W
Sbjct: 943 IYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQW 977
Score = 36.2 bits (82), Expect(3) = 3e-09
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 244 GIYYNEVFSSVVNXXXXXXXXXXXXXXXXXLH*LDVKTTFLHDDL-EDIYM 95
G+ YN+VFS VV L LDVKT FLH +L EDIYM
Sbjct: 895 GVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYM 945
Score = 31.2 bits (69), Expect(3) = 3e-09
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Frame = -3
Query: 476 MEVVENTPTFRK-VKSSESEMWKNVIHEKMYSLEEHLGTKL-----SXXXXXXXXXXXXX 315
+E V T+++ V+ +SE W + +HE+M SLE++ ++
Sbjct: 811 VENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRK 870
Query: 314 KDESPSTGVRYKAKLVAKGNAQ 249
+ S S +YKA+LVA+G +Q
Sbjct: 871 EGLSSSEPPKYKARLVARGYSQ 892
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 40.8 bits (94), Expect(3) = 3e-09
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = -2
Query: 105 IFI*QPMGFKAAGKEGMAC*LRKSIYSLK*SPRRW 1
I++ QP GF GKE C L++S+Y LK SPR+W
Sbjct: 943 IYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQW 977
Score = 36.2 bits (82), Expect(3) = 3e-09
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 244 GIYYNEVFSSVVNXXXXXXXXXXXXXXXXXLH*LDVKTTFLHDDL-EDIYM 95
G+ YN+VFS VV L LDVKT FLH +L EDIYM
Sbjct: 895 GVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYM 945
Score = 31.2 bits (69), Expect(3) = 3e-09
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Frame = -3
Query: 476 MEVVENTPTFRK-VKSSESEMWKNVIHEKMYSLEEHLGTKL-----SXXXXXXXXXXXXX 315
+E V T+++ V+ +SE W + +HE+M SLE++ ++
Sbjct: 811 VENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRK 870
Query: 314 KDESPSTGVRYKAKLVAKGNAQ 249
+ S S +YKA+LVA+G +Q
Sbjct: 871 EGLSSSEPPKYKARLVARGYSQ 892
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 40.8 bits (94), Expect(3) = 3e-09
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = -2
Query: 105 IFI*QPMGFKAAGKEGMAC*LRKSIYSLK*SPRRW 1
I++ QP GF GKE C L++S+Y LK SPR+W
Sbjct: 943 IYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQW 977
Score = 36.2 bits (82), Expect(3) = 3e-09
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 244 GIYYNEVFSSVVNXXXXXXXXXXXXXXXXXLH*LDVKTTFLHDDL-EDIYM 95
G+ YN+VFS VV L LDVKT FLH +L EDIYM
Sbjct: 895 GVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYM 945
Score = 31.2 bits (69), Expect(3) = 3e-09
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Frame = -3
Query: 476 MEVVENTPTFRK-VKSSESEMWKNVIHEKMYSLEEHLGTKL-----SXXXXXXXXXXXXX 315
+E V T+++ V+ +SE W + +HE+M SLE++ ++
Sbjct: 811 VENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRK 870
Query: 314 KDESPSTGVRYKAKLVAKGNAQ 249
+ S S +YKA+LVA+G +Q
Sbjct: 871 EGLSSSEPPKYKARLVARGYSQ 892
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gb|AAU89150.1| integrase core domain containing protein [Oryza sativa Japonica
Group]
gb|ABF98081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1322
Score = 41.2 bits (95), Expect(3) = 3e-09
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = -2
Query: 105 IFI*QPMGFKAAGKEGMAC*LRKSIYSLK*SPRRW 1
I++ QP GF GKE C L++S+Y LK SPR+W
Sbjct: 932 IYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQW 966
Score = 36.6 bits (83), Expect(3) = 3e-09
Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 244 GIYYNEVFSSVVNXXXXXXXXXXXXXXXXXLH*LDVKTTFLHDDL-EDIYM 95
G+ YN+VFS VV L LDVKTTFLH +L E+IYM
Sbjct: 884 GVDYNDVFSPVVKHSSIRTFFSIVTMHDLELEQLDVKTTFLHGELEEEIYM 934
Score = 30.4 bits (67), Expect(3) = 3e-09
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Frame = -3
Query: 473 EVVENT---PTFRK-VKSSESEMWKNVIHEKMYSLEEHLGTKLSXXXXXXXXXXXXXKDE 306
E VENT T+ + V S + E W + I E+M SLE++ +L +
Sbjct: 798 EQVENTLEPATYTEAVVSGDREKWISAIQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFK 857
Query: 305 -----SPSTGVRYKAKLVAKGNAQ 249
SPS R+K +LVAKG +Q
Sbjct: 858 RKEGLSPSEPPRFKVRLVAKGFSQ 881
>emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group]
Length = 621
Score = 44.3 bits (103), Expect(3) = 3e-09
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -2
Query: 105 IFI*QPMGFKAAGKEGMAC*LRKSIYSLK*SPRRW 1
I++ QP GF GKE + C L+KS+Y LK SPR+W
Sbjct: 328 IYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQW 362
Score = 34.3 bits (77), Expect(3) = 3e-09
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 244 GIYYNEVFSSVVNXXXXXXXXXXXXXXXXXLH*LDVKTTFLHDDL-EDIYM 95
GI +N+VFS VV L +DVKT FLH +L EDIYM
Sbjct: 280 GIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYM 330
Score = 29.6 bits (65), Expect(3) = 3e-09
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Frame = -3
Query: 440 VKSSESEMWKNVIHEKMYSLEEHLG---TKLSXXXXXXXXXXXXXKDE--SPSTGVRYKA 276
+ S + W +H++M SLE++ KL + E SPS YKA
Sbjct: 209 IVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKECISPSDEAMYKA 268
Query: 275 KLVAKGNAQ 249
+LVAKG +Q
Sbjct: 269 RLVAKGYSQ 277
>gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 983
Score = 44.3 bits (103), Expect(3) = 4e-09
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -2
Query: 105 IFI*QPMGFKAAGKEGMAC*LRKSIYSLK*SPRRW 1
I++ QP GF GKE + C L+KS+Y LK SPR+W
Sbjct: 684 IYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQW 718
Score = 32.0 bits (71), Expect(3) = 4e-09
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = -3
Query: 440 VKSSESEMWKNVIHEKMYSLEEHLG---TKLSXXXXXXXXXXXXXKDE--SPSTGVRYKA 276
+ S + W +H++M SLE++ KL + E SPS RYKA
Sbjct: 565 IVSDDCNRWITTMHDEMESLEKNHTWELVKLPKEKKSIRCKWIFKRKEGMSPSDEARYKA 624
Query: 275 KLVAKGNAQ 249
+LVAKG +Q
Sbjct: 625 RLVAKGYSQ 633
Score = 31.6 bits (70), Expect(3) = 4e-09
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -1
Query: 241 IYYNEVFSSVVNXXXXXXXXXXXXXXXXXLH*LDVKTTFLHDDL-EDIYM 95
I +N+VFS +V L +DVKT FLH +L EDIYM
Sbjct: 637 IDFNDVFSPIVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYM 686
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 2340
Score = 44.7 bits (104), Expect(3) = 4e-09
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -2
Query: 105 IFI*QPMGFKAAGKEGMAC*LRKSIYSLK*SPRRW 1
I++ QP GF GKE + C L+KS+Y LK SPR+W
Sbjct: 1149 IYMEQPKGFVVPGKENLVCRLKKSLYGLKQSPRQW 1183
Score = 34.3 bits (77), Expect(3) = 4e-09
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 244 GIYYNEVFSSVVNXXXXXXXXXXXXXXXXXLH*LDVKTTFLHDDL-EDIYM 95
GI +N+VFS VV L +DVKT FLH +L EDIYM
Sbjct: 1101 GIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYM 1151
Score = 28.5 bits (62), Expect(3) = 4e-09
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Frame = -3
Query: 440 VKSSESEMWKNVIHEKMYSLEEHLG---TKLSXXXXXXXXXXXXXKDE--SPSTGVRYKA 276
+ S + W +H++M SLE++ KL + E S S RYKA
Sbjct: 1030 IVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSDEARYKA 1089
Query: 275 KLVAKGNAQ 249
+L+AKG +Q
Sbjct: 1090 RLIAKGYSQ 1098
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa]
Length = 1335
Score = 40.8 bits (94), Expect(3) = 5e-09
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = -2
Query: 105 IFI*QPMGFKAAGKEGMAC*LRKSIYSLK*SPRRW 1
I++ QP GF GKE C L++S+Y LK SPR+W
Sbjct: 945 IYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQW 979
Score = 36.2 bits (82), Expect(3) = 5e-09
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 244 GIYYNEVFSSVVNXXXXXXXXXXXXXXXXXLH*LDVKTTFLHDDL-EDIYM 95
G+ YN+VFS VV L LDVKT FLH +L EDIYM
Sbjct: 897 GVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYM 947
Score = 30.4 bits (67), Expect(3) = 5e-09
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Frame = -3
Query: 476 MEVVENTPTFRK-VKSSESEMWKNVIHEKMYSLEEHLGTKLSXXXXXXXXXXXXXKDE-- 306
+E V T+++ V+ +SE W + +HE+M SLE++ ++ +
Sbjct: 813 VENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRK 872
Query: 305 ---SPSTGVRYKAKLVAKGNAQ 249
S S +YKA+LVA+G +Q
Sbjct: 873 EALSLSEPPKYKARLVARGYSQ 894
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 44.3 bits (103), Expect(3) = 5e-09
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -2
Query: 105 IFI*QPMGFKAAGKEGMAC*LRKSIYSLK*SPRRW 1
I++ QP GF GKE + C L+KS+Y LK SPR+W
Sbjct: 977 IYMEQPEGFVVLGKENLVCRLKKSLYGLKQSPRQW 1011
Score = 32.7 bits (73), Expect(3) = 5e-09
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 244 GIYYNEVFSSVVNXXXXXXXXXXXXXXXXXLH*LDVKTTFLHDDL-EDIYM 95
GI +N+VFS ++ L +DVKT FLH +L EDIYM
Sbjct: 929 GIDFNDVFSPIMKHSSIRTLLGIVAMHDYELEQMDVKTAFLHGELEEDIYM 979
Score = 30.4 bits (67), Expect(3) = 5e-09
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = -3
Query: 440 VKSSESEMWKNVIHEKMYSLEEHLG---TKLSXXXXXXXXXXXXXKDE--SPSTGVRYKA 276
+ S + W +H++M SL+++ KL + E SPS RYKA
Sbjct: 858 IVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKA 917
Query: 275 KLVAKGNAQ 249
+LVAKG +Q
Sbjct: 918 RLVAKGYSQ 926
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 44.3 bits (103), Expect(3) = 5e-09
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -2
Query: 105 IFI*QPMGFKAAGKEGMAC*LRKSIYSLK*SPRRW 1
I++ QP GF GKE + C L+KS+Y LK SPR+W
Sbjct: 977 IYMEQPEGFVVLGKENLVCRLKKSLYGLKQSPRQW 1011
Score = 32.7 bits (73), Expect(3) = 5e-09
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 244 GIYYNEVFSSVVNXXXXXXXXXXXXXXXXXLH*LDVKTTFLHDDL-EDIYM 95
GI +N+VFS ++ L +DVKT FLH +L EDIYM
Sbjct: 929 GIDFNDVFSPIMKHSSIRTLLGIVAMHDYELEQMDVKTAFLHGELEEDIYM 979
Score = 30.4 bits (67), Expect(3) = 5e-09
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = -3
Query: 440 VKSSESEMWKNVIHEKMYSLEEHLG---TKLSXXXXXXXXXXXXXKDE--SPSTGVRYKA 276
+ S + W +H++M SL+++ KL + E SPS RYKA
Sbjct: 858 IVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKA 917
Query: 275 KLVAKGNAQ 249
+LVAKG +Q
Sbjct: 918 RLVAKGYSQ 926
>emb|CAN63660.1| hypothetical protein VITISV_008416 [Vitis vinifera]
Length = 1001
Score = 46.2 bits (108), Expect(2) = 6e-09
Identities = 38/100 (38%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Frame = -1
Query: 385 LWKNTWELSYRK-GRK-LYNANVYMLRMNLQVQVFDTRPN**QKEMHREGIYYNEVFSSV 212
L TWEL+ G+K L+N VY ++M+ M +EGI Y E+FS V
Sbjct: 626 LGNQTWELTELPVGKKALHNKWVYRIKMS----------------MMKEGIDYTEIFSPV 669
Query: 211 VNXXXXXXXXXXXXXXXXXLH*LDVKTTFLHDDL-EDIYM 95
V L LDVKTTFLH DL ED+YM
Sbjct: 670 VKMSIIRLVLGMVAAENLHLEQLDVKTTFLHGDLEEDLYM 709
Score = 41.6 bits (96), Expect(2) = 6e-09
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = -2
Query: 105 IFI*QPMGFKAAGKEGMAC*LRKSIYSLK*SPRRW 1
+++ QP GF G+E + C LRKS+Y LK +PR+W
Sbjct: 707 LYMNQPEGFIVQGQENLVCKLRKSLYDLKQAPRQW 741
>gb|ASR75372.1| retrotransposon protein [Oryza nivara]
Length = 1170
Score = 41.2 bits (95), Expect(3) = 6e-09
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = -2
Query: 105 IFI*QPMGFKAAGKEGMAC*LRKSIYSLK*SPRRW 1
I++ QP GF GKE C L++S+Y LK SPR+W
Sbjct: 852 IYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQW 886
Score = 34.7 bits (78), Expect(3) = 6e-09
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 244 GIYYNEVFSSVVNXXXXXXXXXXXXXXXXXLH*LDVKTTFLHDDL-EDIYM 95
G+ YN+VFS VV L LDVKT FLH +L E+IYM
Sbjct: 804 GVDYNDVFSPVVKHSSIRTFFSIVAMHDLELEQLDVKTAFLHGELEEEIYM 854
Score = 31.2 bits (69), Expect(3) = 6e-09
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Frame = -3
Query: 473 EVVENT---PTFRK-VKSSESEMWKNVIHEKMYSLEEHLGT-------KLSXXXXXXXXX 327
E VENT T+ + V S + E W + + E+M SLE++ GT K
Sbjct: 717 EQVENTLEPATYTEAVVSGDREKWISAMQEEMQSLEKN-GTWELVHLPKQKKPVRCKWIF 775
Query: 326 XXXXKDESPSTGVRYKAKLVAKGNAQ 249
SPS R+KA+LVAKG +Q
Sbjct: 776 KEKGGFISPSEPPRFKARLVAKGFSQ 801