BLASTX nr result
ID: Ophiopogon22_contig00036058
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon22_contig00036058
(479 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PKA49510.1| Retrovirus-related Pol polyprotein from transposo... 71 2e-11
emb|CAN63293.1| hypothetical protein VITISV_025722 [Vitis vinifera] 69 1e-10
emb|CAJ86192.1| H0306F03.15 [Oryza sativa] 69 2e-10
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 69 2e-10
emb|CAJ86151.1| H0413E07.4 [Oryza sativa] 69 2e-10
gb|KHN13665.1| Retrovirus-related Pol polyprotein from transposo... 68 2e-10
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 68 3e-10
emb|CAN80490.1| hypothetical protein VITISV_004703 [Vitis vinifera] 67 7e-10
gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subc... 66 1e-09
gb|ABA93547.1| retrotransposon protein, putative, Ty1-copia subc... 66 2e-09
gb|PON54809.1| LOW QUALITY PROTEIN: Gag-Pol-related retrotranspo... 65 4e-09
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group] 65 4e-09
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa] 65 4e-09
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 64 6e-09
ref|XP_018810875.1| PREDICTED: cyclic nucleotide-gated ion chann... 64 1e-08
gb|KUM46797.1| hypothetical protein ABT39_MTgene6252 (mitochondr... 61 1e-08
gb|KYP67664.1| Retrovirus-related Pol polyprotein from transposo... 64 1e-08
gb|KYP38095.1| Retrovirus-related Pol polyprotein from transposo... 64 1e-08
gb|KYP36645.1| Retrovirus-related Pol polyprotein from transposo... 64 1e-08
gb|KYP53032.1| Retrovirus-related Pol polyprotein from transposo... 64 1e-08
>gb|PKA49510.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Apostasia shenzhenica]
Length = 365
Score = 71.2 bits (173), Expect = 2e-11
Identities = 46/143 (32%), Positives = 65/143 (45%), Gaps = 21/143 (14%)
Frame = -3
Query: 366 CYHCKKTGHLNNRSQFKKWLKKIGYVKADNGRDKDVQTGVTKEPEDSCDVLTAESGVLAA 187
CY+CKK GH K ++ + +G + V + + K+ E C +S
Sbjct: 115 CYYCKKEGHWKRDCPKKSKQQQ----QKKSGEEASVASRLEKDSETLCTFSCMDSS---- 166
Query: 186 ESGKERYFDTWILDSGCTWYMCPRRDWFSSYRIVDGG-------DRC*GSGI-------- 52
D+WILDS C+++MCP RDWFS+Y I DGG C GI
Sbjct: 167 --------DSWILDSDCSYHMCPFRDWFSTYSIHDGGRVIMGNNSECKSVGIGTIKIKMF 218
Query: 51 ------LTGVWHIPDLKKKILLL 1
LT V H+PDL+K ++ L
Sbjct: 219 DGVIRTLTEVRHVPDLRKGLISL 241
>emb|CAN63293.1| hypothetical protein VITISV_025722 [Vitis vinifera]
Length = 347
Score = 68.9 bits (167), Expect = 1e-10
Identities = 39/121 (32%), Positives = 60/121 (49%)
Frame = -3
Query: 366 CYHCKKTGHLNNRSQFKKWLKKIGYVKADNGRDKDVQTGVTKEPEDSCDVLTAESGVLAA 187
CY C K GH+ KK + K + + +V VT+E +S D +L+
Sbjct: 123 CYKCGKKGHMKRDCPEKKKRGSVSENKEGSSKSANV---VTEEDSESGD-----GDMLSV 174
Query: 186 ESGKERYFDTWILDSGCTWYMCPRRDWFSSYRIVDGGDRC*GSGILTGVWHIPDLKKKIL 7
S + D+WILDS C+++M P +DWF++YR V+ G GS + GV + I+
Sbjct: 175 SSSSDHLTDSWILDSTCSYHMTPNKDWFNTYRSVNSGSILMGSDVSCGVATVESESDNIV 234
Query: 6 L 4
L
Sbjct: 235 L 235
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa]
Length = 1037
Score = 68.9 bits (167), Expect = 2e-10
Identities = 50/148 (33%), Positives = 74/148 (50%), Gaps = 33/148 (22%)
Frame = -3
Query: 345 GHLNNRSQFK--KWLKKIGY--VKADNGRDKDVQTGV-----TKEPEDSCDVLTAESG-- 199
G +R ++K K+ K+ G+ K +DKD +TG KE E V+T E
Sbjct: 42 GRSKSRGRYKSCKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEDEGKAAVVTDEKSDA 101
Query: 198 -VLAAESGKERYFDTWILDSGCTWYMCPRRDWFSSYRIVDGG-------DRC*GSGI--- 52
+L A +G + D WILD+ CT++MCP RDWF++Y +V GG C +GI
Sbjct: 102 ELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTV 161
Query: 51 -----------LTGVWHIPDLKKKILLL 1
L+ V HIP+LK+ ++ L
Sbjct: 162 QIKMFDGCIRTLSDVRHIPNLKRSLISL 189
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 68.9 bits (167), Expect = 2e-10
Identities = 50/148 (33%), Positives = 74/148 (50%), Gaps = 33/148 (22%)
Frame = -3
Query: 345 GHLNNRSQFK--KWLKKIGY--VKADNGRDKDVQTGV-----TKEPEDSCDVLTAESG-- 199
G +R ++K K+ K+ G+ K +DKD +TG KE E V+T E
Sbjct: 225 GRSKSRGRYKSCKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDA 284
Query: 198 -VLAAESGKERYFDTWILDSGCTWYMCPRRDWFSSYRIVDGG-------DRC*GSGI--- 52
+L A +G + D WILD+ CT++MCP RDWF++Y +V GG C +GI
Sbjct: 285 ELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTV 344
Query: 51 -----------LTGVWHIPDLKKKILLL 1
L+ V HIP+LK+ ++ L
Sbjct: 345 QIKMFDGCIRTLSDVRHIPNLKRSLISL 372
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa]
Length = 1205
Score = 68.9 bits (167), Expect = 2e-10
Identities = 50/148 (33%), Positives = 74/148 (50%), Gaps = 33/148 (22%)
Frame = -3
Query: 345 GHLNNRSQFK--KWLKKIGY--VKADNGRDKDVQTGV-----TKEPEDSCDVLTAESG-- 199
G +R ++K K+ K+ G+ K +DKD +TG KE E V+T E
Sbjct: 210 GRSKSRGRYKSCKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEDEGKAAVVTDEKSDA 269
Query: 198 -VLAAESGKERYFDTWILDSGCTWYMCPRRDWFSSYRIVDGG-------DRC*GSGI--- 52
+L A +G + D WILD+ CT++MCP RDWF++Y +V GG C +GI
Sbjct: 270 ELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTV 329
Query: 51 -----------LTGVWHIPDLKKKILLL 1
L+ V HIP+LK+ ++ L
Sbjct: 330 QIKMFDGCIRTLSDVRHIPNLKRSLISL 357
>gb|KHN13665.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Glycine soja]
Length = 337
Score = 68.2 bits (165), Expect = 2e-10
Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Frame = -3
Query: 366 CYHCKKTGHLNNRSQFKKWLKKIGYVKADNGRDKDVQT-GVTKEPEDSCDVLTAESGVLA 190
CY+CKK GH +K K +NG+ D V + +S +VL+ +
Sbjct: 227 CYYCKKEGHFRKECPERK--------KKNNGKYNDESDIAVVADGYESAEVLSIST---- 274
Query: 189 AESGKERYFDTWILDSGCTWYMCPRRDWFSSYRIVDGGDRC*GSGILTGVWHIPDLKKKI 10
+++ + WILDSGC+++M P +WFSSY+ +DGG G+ ++ V I +K K+
Sbjct: 275 -----KKHSEEWILDSGCSFHMTPNLEWFSSYKEIDGGKVLMGNNMVCNVIGIGTIKLKV 329
>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
Length = 1305
Score = 68.2 bits (165), Expect = 3e-10
Identities = 36/98 (36%), Positives = 47/98 (47%)
Frame = -3
Query: 366 CYHCKKTGHLNNRSQFKKWLKKIGYVKADNGRDKDVQTGVTKEPEDSCDVLTAESGVLAA 187
CY+C K GHL W K + + G D +VL +E+ V +
Sbjct: 230 CYNCGKRGHLKKDC----WSNK---KSGEKSSEASTSQGCVASTSDDGEVLYSEAAV--S 280
Query: 186 ESGKERYFDTWILDSGCTWYMCPRRDWFSSYRIVDGGD 73
GK R D WI+DSG TW+M PRRDWF +Y V G+
Sbjct: 281 TKGKNRLTDVWIVDSGATWHMTPRRDWFCTYEPVSEGN 318
>emb|CAN80490.1| hypothetical protein VITISV_004703 [Vitis vinifera]
Length = 777
Score = 67.0 bits (162), Expect = 7e-10
Identities = 47/147 (31%), Positives = 64/147 (43%), Gaps = 25/147 (17%)
Frame = -3
Query: 366 CYHCKKTGHLN----NRSQFKKWLKKIGYVKADNGRDKDVQTGVTKEPEDSCDVLTAESG 199
CYHC K G + +R Q +K + D+G D S +VLT
Sbjct: 126 CYHCNKIGQIRRICPDRQQEEKTQAQGSAAIIDDGYD-------------STEVLTIRLN 172
Query: 198 VLAAESGKERYFDTWILDSGCTWYMCPRRDWFSSYRIVDGGDRC*GSGI----------- 52
E W+LDSGCT++MCPRRDWFSSY+ V+GG G+ +
Sbjct: 173 PNHEE---------WVLDSGCTYHMCPRRDWFSSYQEVNGGKLLLGNNMSCNVVGIGTMA 223
Query: 51 ----------LTGVWHIPDLKKKILLL 1
L V H+PDLK+ ++ L
Sbjct: 224 INMHDGKTRTLKEVRHVPDLKRNLISL 250
>gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 983
Score = 66.2 bits (160), Expect = 1e-09
Identities = 47/155 (30%), Positives = 69/155 (44%), Gaps = 37/155 (23%)
Frame = -3
Query: 354 KKTGHLNNRSQFKKWLKKIGYVKADNG--------RDKDVQTGV-----TKEPEDSCDVL 214
K + RS+ + K Y K D +DKD +TG KE E V+
Sbjct: 218 KSSSSYRGRSKSRGKYKSYKYYKRDRHDISECWKLQDKDKRTGKYVPKGKKEKEGKAVVV 277
Query: 213 T---AESGVLAAESGKERYFDTWILDSGCTWYMCPRRDWFSSYRIVDGGDRC*GSG---- 55
T +++ +L A +G + D WILD+ CT +MCP RDWF++Y + GG G
Sbjct: 278 TDGKSDAELLVAYAGCAQTSDQWILDTACTNHMCPNRDWFATYEALQGGTVFMGDDTPCE 337
Query: 54 -----------------ILTGVWHIPDLKKKILLL 1
L+ VWHIP+LK+ ++ L
Sbjct: 338 VADIGTVQIKMFDGCIRTLSDVWHIPNLKRSLISL 372
>gb|ABA93547.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 546
Score = 65.9 bits (159), Expect = 2e-09
Identities = 45/133 (33%), Positives = 64/133 (48%), Gaps = 11/133 (8%)
Frame = -3
Query: 366 CYHCKKTGHLNNRSQFKKWLKKIGYVKADNGRDKDVQTGV-----TKEPEDSCDVLTAES 202
C +CK+ GH + S+ K +DKD +TG KE E V+T E
Sbjct: 53 CKYCKRDGH--DISECWKL------------QDKDKRTGKYIPKGKKEEEGKAAVVTDEK 98
Query: 201 G---VLAAESGKERYFDTWILDSGCTWYMCPRRDWFSSYRIVDGGDRC*GSGI---LTGV 40
+L A +G + D WILD+ CT++MCP RDWF +Y V GG G + V
Sbjct: 99 SDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFVTYEAVQGGTVLMGDDTPCEVADV 158
Query: 39 WHIPDLKKKILLL 1
HIP+ + ++ L
Sbjct: 159 RHIPNFNRSLISL 171
>gb|PON54809.1| LOW QUALITY PROTEIN: Gag-Pol-related retrotransposon family protein
[Trema orientalis]
Length = 380
Score = 64.7 bits (156), Expect = 4e-09
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 21/142 (14%)
Frame = -3
Query: 363 YHCKKTGHLNNRSQFKKWLKKIGYVKADNGRDKDVQTGVTKEPEDSCDVLTAESGVLAAE 184
YHC K GH+ R + ++ K G + D + + +S +VL+ + +E
Sbjct: 240 YHCNKNGHIR-RLRPERQNKDAGKLDGD--------AVIVDDGYESSEVLS----ISESE 286
Query: 183 SGKERYFDTWILDSGCTWYMCPRRDWFSSYRIVDGGDRC*GSG----------------- 55
+ KE W++DSGC+++MCPR DWF Y+ VDGG G+
Sbjct: 287 NSKE-----WVMDSGCSYHMCPREDWFMDYQEVDGGKVLMGNNMACKVMGIGSISIRMFD 341
Query: 54 ----ILTGVWHIPDLKKKILLL 1
IL V H+P+LK+ ++ L
Sbjct: 342 GVTRILKNVRHVPELKRSLISL 363
>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
Length = 944
Score = 64.7 bits (156), Expect = 4e-09
Identities = 43/119 (36%), Positives = 59/119 (49%), Gaps = 29/119 (24%)
Frame = -3
Query: 270 DKDVQTGV-----TKEPEDSCDVLTAESG---VLAAESGKERYFDTWILDSGCTWYMCPR 115
DKD +TG KE E V+T E +L A +G + D WILD+ CT++MCP
Sbjct: 86 DKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPN 145
Query: 114 RDWFSSYRIVDGG-------DRC*GSGI--------------LTGVWHIPDLKKKILLL 1
RDWF++Y V GG C +GI L+ V HIP+LK+ ++ L
Sbjct: 146 RDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLSDVRHIPNLKRSLISL 204
>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa]
Length = 944
Score = 64.7 bits (156), Expect = 4e-09
Identities = 43/119 (36%), Positives = 59/119 (49%), Gaps = 29/119 (24%)
Frame = -3
Query: 270 DKDVQTGV-----TKEPEDSCDVLTAESG---VLAAESGKERYFDTWILDSGCTWYMCPR 115
DKD +TG KE E V+T E +L A +G + D WILD+ CT++MCP
Sbjct: 86 DKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPN 145
Query: 114 RDWFSSYRIVDGG-------DRC*GSGI--------------LTGVWHIPDLKKKILLL 1
RDWF++Y V GG C +GI L+ V HIP+LK+ ++ L
Sbjct: 146 RDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLSDVRHIPNLKRSLISL 204
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 64.3 bits (155), Expect = 6e-09
Identities = 49/146 (33%), Positives = 68/146 (46%), Gaps = 24/146 (16%)
Frame = -3
Query: 366 CYHCKKTGHLNNRSQFKKWLKKIGYVKADNGRDKDVQTGVTKEPEDSCDVLTAESG---V 196
C +CK+ GH + S+ K K D K + G KE E V+T E +
Sbjct: 145 CKYCKRDGH--DISECWKLQDK------DKRTRKYIPKG-KKEEEGKAAVVTDEKSDAEL 195
Query: 195 LAAESGKERYFDTWILDSGCTWYMCPRRDWFSSYRIVDGG-------DRC*GSGI----- 52
L A +G + D WILD+ CT++MCP RDWF++Y V GG C +GI
Sbjct: 196 LVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQI 255
Query: 51 ---------LTGVWHIPDLKKKILLL 1
L V HIP+LK+ ++ L
Sbjct: 256 KMFDGCIRTLLDVRHIPNLKRSLISL 281
>ref|XP_018810875.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like, partial
[Juglans regia]
Length = 575
Score = 63.5 bits (153), Expect = 1e-08
Identities = 33/119 (27%), Positives = 55/119 (46%)
Frame = -3
Query: 366 CYHCKKTGHLNNRSQFKKWLKKIGYVKADNGRDKDVQTGVTKEPEDSCDVLTAESGVLAA 187
C++C K GH N K ++G V + + D+ VLA
Sbjct: 446 CHYCHKFGHYKNECPKLK--------NREDGTSSSNAVSVADDRSNDLDL------VLAI 491
Query: 186 ESGKERYFDTWILDSGCTWYMCPRRDWFSSYRIVDGGDRC*GSGILTGVWHIPDLKKKI 10
R+ D W++DS CT++MCP++DWF +Y V+GG G+ + + I ++ K+
Sbjct: 492 SDSNSRFSDKWVMDSACTFHMCPKKDWFINYESVNGGSVLLGNDMACRIAGIGSVRIKM 550
>gb|KUM46797.1| hypothetical protein ABT39_MTgene6252 (mitochondrion) [Picea
glauca]
Length = 164
Score = 61.2 bits (147), Expect = 1e-08
Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Frame = -3
Query: 366 CYHCKKTGHLNNRSQFKKWLKKIGYVKADNGRDKDVQTGVTKEPEDSCDVLTAESGVLAA 187
C++C K GHL +F+K K +NG++K TK + + T SGV+
Sbjct: 27 CWNCGKKGHLKKDCRFRKG--KSFNSSKENGKEK--HEAETKSEANQVEEST--SGVIED 80
Query: 186 E----SGKERYFDTWILDSGCTWYMCPRRDWFSSYRIVDGG 76
E S Y W+LD+ T +MCP R WFSSY +GG
Sbjct: 81 EVFVASSNPTYHQNWVLDTAATHHMCPHRSWFSSYESCEGG 121
>gb|KYP67664.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1256
Score = 63.5 bits (153), Expect = 1e-08
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 23/143 (16%)
Frame = -3
Query: 366 CYHCKKTGHLNNRSQFKKWLKKIGYVKADNGRDKDVQT--GVTKEPEDSCDVLTAESGVL 193
CY+C GH+ W KK G G++ + T G ++ ++L +E+
Sbjct: 181 CYNCGMRGHMKKDC----WHKKSG-----GGKNSEASTSQGCVASTQEDGEILYSEA--- 228
Query: 192 AAESGKERYFDTWILDSGCTWYMCPRRDWFSSYRIVDGGDRC*GSG-------------- 55
+ G+++ + WILDSG TW+M P RDWF +Y + GG G+
Sbjct: 229 ISSRGEKQLHECWILDSGATWHMTPNRDWFCTYESISGGSVFMGNDHALEIAGVGTIKLK 288
Query: 54 -------ILTGVWHIPDLKKKIL 7
+ GV H+ LKK +L
Sbjct: 289 MYDGTIRTIQGVRHVKGLKKNLL 311
>gb|KYP38095.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1256
Score = 63.5 bits (153), Expect = 1e-08
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 23/143 (16%)
Frame = -3
Query: 366 CYHCKKTGHLNNRSQFKKWLKKIGYVKADNGRDKDVQT--GVTKEPEDSCDVLTAESGVL 193
CY+C GH+ W KK G G++ + T G ++ ++L +E+
Sbjct: 181 CYNCGMRGHMKKDC----WHKKSG-----GGKNSEASTSQGCVASTQEDGEILYSEA--- 228
Query: 192 AAESGKERYFDTWILDSGCTWYMCPRRDWFSSYRIVDGGDRC*GSG-------------- 55
+ G+++ + WILDSG TW+M P RDWF +Y + GG G+
Sbjct: 229 ISSRGEKQLHECWILDSGATWHMTPNRDWFCTYESISGGSVFMGNDHALEIAGVGTIKLK 288
Query: 54 -------ILTGVWHIPDLKKKIL 7
+ GV H+ LKK +L
Sbjct: 289 MYDGTIRTIQGVRHVKGLKKNLL 311
>gb|KYP36645.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1256
Score = 63.5 bits (153), Expect = 1e-08
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 23/143 (16%)
Frame = -3
Query: 366 CYHCKKTGHLNNRSQFKKWLKKIGYVKADNGRDKDVQT--GVTKEPEDSCDVLTAESGVL 193
CY+C GH+ W KK G G++ + T G ++ ++L +E+
Sbjct: 181 CYNCGMRGHMKKDC----WHKKSG-----GGKNSEASTSQGCVASTQEDGEILYSEA--- 228
Query: 192 AAESGKERYFDTWILDSGCTWYMCPRRDWFSSYRIVDGGDRC*GSG-------------- 55
+ G+++ + WILDSG TW+M P RDWF +Y + GG G+
Sbjct: 229 ISSRGEKQLHECWILDSGATWHMTPNRDWFCTYESISGGSVFMGNDHALEIAGVGTIKLK 288
Query: 54 -------ILTGVWHIPDLKKKIL 7
+ GV H+ LKK +L
Sbjct: 289 MYDGTIRTIQGVRHVKGLKKNLL 311
>gb|KYP53032.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1305
Score = 63.5 bits (153), Expect = 1e-08
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 23/143 (16%)
Frame = -3
Query: 366 CYHCKKTGHLNNRSQFKKWLKKIGYVKADNGRDKDVQT--GVTKEPEDSCDVLTAESGVL 193
CY+C GH+ W KK G G++ + T G ++ ++L +E+
Sbjct: 230 CYNCGMRGHMKKDC----WHKKSG-----GGKNSEASTSQGCVASTQEDGEILYSEA--- 277
Query: 192 AAESGKERYFDTWILDSGCTWYMCPRRDWFSSYRIVDGGDRC*GSG-------------- 55
+ G+++ + WILDSG TW+M P RDWF +Y + GG G+
Sbjct: 278 ISSRGEKQLHECWILDSGATWHMTPNRDWFCTYESISGGSVFMGNDHALEIAGVGTIKLK 337
Query: 54 -------ILTGVWHIPDLKKKIL 7
+ GV H+ LKK +L
Sbjct: 338 MYDGTIRTIQGVRHVKGLKKNLL 360