BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon22_contig00034775
         (603 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABB47665.1| retrotransposon protein, putative, unclassified, ...    57   1e-14
gb|OMO63131.1| Integrase, catalytic core [Corchorus capsularis]        62   3e-13
gb|OMO50708.1| Zinc finger, CCHC-type [Corchorus capsularis]           60   1e-12
gb|OMO83306.1| Integrase, catalytic core [Corchorus capsularis]        57   3e-12
gb|AAT58770.1| putative polyprotein [Oryza sativa Japonica Group]      47   2e-09
gb|ADB85253.1| putative retrotransposon protein, partial [Phyllo...    46   4e-09
gb|KUM47284.1| hypothetical protein ABT39_MTgene5469 (mitochondr...    63   4e-09
gb|OMO90284.1| Integrase, catalytic core [Corchorus capsularis]        47   2e-08
dbj|BAH93941.1| Os07g0500000 [Oryza sativa Japonica Group]             46   1e-07
gb|OMO56344.1| Integrase, catalytic core [Corchorus capsularis]        62   1e-07
emb|CAC95126.1| gag-pol polyprotein [Populus deltoides]                44   1e-06
emb|CAN69462.1| hypothetical protein VITISV_002919 [Vitis vinifera]    47   3e-06

>gb|ABB47665.1| retrotransposon protein, putative, unclassified, expressed [Oryza
           sativa Japonica Group]
 gb|ABB47666.1| retrotransposon protein, putative, unclassified, expressed [Oryza
           sativa Japonica Group]
          Length = 1682

 Score = 57.4 bits (137), Expect(2) = 1e-14
 Identities = 40/102 (39%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
 Frame = -2

Query: 560 SGASHYMVFDNSVLVNCFCIDHSLCIYTAIGTPLDNQCGDITPNSDSSRHLTLLFVFHIP 381
           SGAS +M FD+S L +C  + +   ++TA GT     C      S SS   T+  V  +P
Sbjct: 188 SGASFHMSFDDSWLTSCRLVKNGATVHTANGT----LCKVTHQGSISSPQFTVPNVSLVP 243

Query: 380 KLSMQLLSVVKLADFVCTISFNST-YVIRDR-TSQMIGTYYR 261
           KLSM L+SV +L D  C + F+ T   ++DR T  +IGT +R
Sbjct: 244 KLSMNLISVGQLTDTNCFVGFDDTSCFVQDRHTGAVIGTGHR 285



 Score = 50.1 bits (118), Expect(2) = 1e-14
 Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
 Frame = -1

Query: 264 QSYGLYQLESLNLPTPSIPHYNGFGLSTSDL*------HHLLGPISCPHLKTLVELGVLE 103
           +S GLY L+SL+LP+ S    + +    S         HH LG +    L TL+  GVL 
Sbjct: 288 RSCGLYILDSLSLPSSSTNTPSVYSPMCSTACKSFPQWHHRLGHLCGSRLATLINQGVLG 347

Query: 102 SFPYSSLSDCTGCRLAK*LDLHFPCSHHMALEPF 1
           S P  +   C GC+L K + L +P S   +  PF
Sbjct: 348 SVPVDTTFVCKGCKLGKQVQLPYPSSTSRSSRPF 381


>gb|OMO63131.1| Integrase, catalytic core [Corchorus capsularis]
          Length = 1000

 Score = 62.4 bits (150), Expect(2) = 3e-13
 Identities = 39/99 (39%), Positives = 60/99 (60%), Gaps = 3/99 (3%)
 Frame = -2

Query: 560 SGASHYMVFDNSVLVNCFCIDHSLCIYTAIGTPLD-NQCGDITPNSDSSRHLTLLFVFHI 384
           SGAS++M  D+S+L NC  +   L I TA G+ +  ++ G +T  S  S   ++  +F+ 
Sbjct: 284 SGASYHMTSDSSILENCLDLSQPLDIQTANGSLMQISKVGSVTTKSYPSGKFSIPNIFYA 343

Query: 383 PKLSMQLLSVVKLADFVCTISFNSTY-VIRDR-TSQMIG 273
           P+LS  LLSV +LAD  C I F+  + V++DR T + IG
Sbjct: 344 PQLSANLLSVGQLADLGCDIWFSDVFCVVQDRHTGKQIG 382



 Score = 40.4 bits (93), Expect(2) = 3e-13
 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
 Frame = -1

Query: 255 GLYQLESLNLPTPSIPHYNGFGL---------STSDL*HHLLGPISCPHLKTLVELGVLE 103
           GLY LE L +P    P    F +         S+  L H  LG +S   L+ +  +G+L 
Sbjct: 389 GLYMLEFLFVP----PIKQNFVMPAFVLDKNSSSFHLWHSRLGHVSSSRLRYMSSVGLLG 444

Query: 102 SFPYSSLSDCTGCRLAK 52
           +  YS +SDC  C+LAK
Sbjct: 445 NVKYSDISDCKACKLAK 461


>gb|OMO50708.1| Zinc finger, CCHC-type [Corchorus capsularis]
          Length = 2413

 Score = 60.1 bits (144), Expect(2) = 1e-12
 Identities = 38/99 (38%), Positives = 59/99 (59%), Gaps = 3/99 (3%)
 Frame = -2

Query: 560  SGASHYMVFDNSVLVNCFCIDHSLCIYTAIGTPLD-NQCGDITPNSDSSRHLTLLFVFHI 384
            SGAS++M  D+S+L NC  +   L I  A G+ +  ++ G +T  S  S   ++  +F+ 
Sbjct: 1452 SGASYHMTSDSSILENCLDLSQPLDIQIANGSLMQISKVGSVTTKSYPSGKFSIPNIFYA 1511

Query: 383  PKLSMQLLSVVKLADFVCTISFNSTY-VIRDR-TSQMIG 273
            P+LS  LLSV +LAD  C I F+  + V++DR T + IG
Sbjct: 1512 PQLSANLLSVGQLADLGCDIWFSDVFCVVQDRHTGKQIG 1550



 Score = 40.8 bits (94), Expect(2) = 1e-12
 Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
 Frame = -1

Query: 255  GLYQLESLNLPTPSIPHYNGFGL---------STSDL*HHLLGPISCPHLKTLVELGVLE 103
            GLY LE L +P    P    F +         S+  L H  LG +S   L+ +  +G+L 
Sbjct: 1557 GLYMLEFLFVP----PIKQNFVMPAFVLDKNSSSFHLWHSRLGHVSSSRLRYMSSVGLLG 1612

Query: 102  SFPYSSLSDCTGCRLAK*LDLHF 34
            +  YS +SDC  C+LAK   L F
Sbjct: 1613 NVKYSDISDCKACKLAKFSTLPF 1635


>gb|OMO83306.1| Integrase, catalytic core [Corchorus capsularis]
          Length = 1165

 Score = 56.6 bits (135), Expect(2) = 3e-12
 Identities = 38/99 (38%), Positives = 58/99 (58%), Gaps = 3/99 (3%)
 Frame = -2

Query: 560 SGASHYMVFDNSVLVNCFCIDHSLCIYTAIGTPLD-NQCGDITPNSDSSRHLTLLFVFHI 384
           SGASH+M  ++S L NC  +   + I+ A G+ +  ++ G IT  S       +  V + 
Sbjct: 402 SGASHHMTSNSSFLENCSHLSQPIDIHIANGSSMQVSKVGSITTKSYPLGKFYVPNVLYA 461

Query: 383 PKLSMQLLSVVKLADFVCTISFNSTY-VIRDR-TSQMIG 273
           P+LS+ LLSV +LADF C I F+  + V++DR T + IG
Sbjct: 462 PQLSVNLLSVGQLADFGCDIWFSDIFCVVQDRHTGKQIG 500



 Score = 42.7 bits (99), Expect(2) = 3e-12
 Identities = 24/62 (38%), Positives = 35/62 (56%)
 Frame = -1

Query: 186 STSDL*HHLLGPISCPHLKTLVELGVLESFPYSSLSDCTGCRLAK*LDLHFPCSHHMALE 7
           S+  L H  LG +S   L+ ++ +G+L +  YS +SDC GC LAK   L F  S  ++  
Sbjct: 535 SSFHLWHSRLGHVSSSRLRYMLSVGLLGNVKYSDISDCKGCILAKFSALPFNKSTSISNA 594

Query: 6   PF 1
           PF
Sbjct: 595 PF 596


>gb|AAT58770.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1419

 Score = 47.4 bits (111), Expect(2) = 2e-09
 Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%)
 Frame = -2

Query: 602 ITGMSNNSGIS----IHWSGASHYMVFDNSVLVNCFCIDHSLCIYTAIGTPLDNQCGDIT 435
           ITG S ++ ++    I  SGAS +M  D S L +C  +  +  + TA GT L        
Sbjct: 474 ITGCSLSANVTDSCWILDSGASFHMTPDISQLQSC-SLTKASSVQTADGTILPVSL---- 528

Query: 434 PNSDSSRHLTLLFVFHIPKLSMQLLSVVKLADFVCTISFN--STYVIRDRTSQMIGTYYR 261
             +  ++  T+  VF++P LSM+L+SV +L D  C + F+  + YV+   T  ++G  +R
Sbjct: 529 QGTLQTKEYTIPDVFYVPNLSMKLISVGQLTDMKCHVVFDEAACYVLDRATGNLVGAGHR 588

Query: 260 V 258
           +
Sbjct: 589 L 589



 Score = 42.7 bits (99), Expect(2) = 2e-09
 Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 16/101 (15%)
 Frame = -1

Query: 255 GLYQLESLNLPTPSIPHYNGFGLSTSDL*----------------HHLLGPISCPHLKTL 124
           GLY L+ L+LPT +   + G   S + +                 HH LG +    L TL
Sbjct: 594 GLYVLDHLHLPTSTSSGFPGNSASATSITSNSSVYSSLSASFPQWHHRLGHLCGSRLSTL 653

Query: 123 VELGVLESFPYSSLSDCTGCRLAK*LDLHFPCSHHMALEPF 1
           V+ GVL +    +   C GC+L K + L +  S   +  PF
Sbjct: 654 VQQGVLGNVSIETDFVCKGCKLGKQVQLPYRSSMSRSTSPF 694


>gb|ADB85253.1| putative retrotransposon protein, partial [Phyllostachys edulis]
          Length = 861

 Score = 46.2 bits (108), Expect(2) = 4e-09
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
 Frame = -1

Query: 255 GLYQLESLNLPTPSIPHYNGFGLSTSDL*-------HHLLGPISCPHLKTLVELGVLESF 97
           GLY L+ L+LP+ S+        +T+          HH LG +    L +LV  GVL   
Sbjct: 357 GLYILDRLHLPSASVAPITSTSTATAAATSGVFAQWHHRLGHLCGSCLSSLVRQGVLGRV 416

Query: 96  PYSSLSDCTGCRLAK*LDLHFPCSHHMALEPF 1
           P  +   C GC+L K L L +  S  ++  PF
Sbjct: 417 PVDTSMFCQGCKLGKWLQLPYHSSESLSSRPF 448



 Score = 42.7 bits (99), Expect(2) = 4e-09
 Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
 Frame = -2

Query: 395 VFHIPKLSMQLLSVVKLADFVCTISFNS-TYVIRDR-TSQMIGTYYRVMD 252
           V H+P+L+MQLLSV +L D  C + F+S TY ++DR T   +GT  R  D
Sbjct: 305 VSHVPQLTMQLLSVGQLTDLGCRVGFDSHTYFVQDRQTGTSLGTGRRRRD 354


>gb|KUM47284.1| hypothetical protein ABT39_MTgene5469 (mitochondrion) [Picea
           glauca]
          Length = 141

 Score = 62.8 bits (151), Expect = 4e-09
 Identities = 40/88 (45%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
 Frame = -2

Query: 542 MVFDNSVLVNCFCIDHSLCIYTAIGTPLD-NQCGDITPNSDSSRHLTLLFVFHIPKLSMQ 366
           M  D+S LV+C     SL I TA G+PL   Q G +TP SDSS  L++  V H+P+LSM 
Sbjct: 1   MTSDSSALVHCSSPLSSLSIITADGSPLTVAQIGSVTPISDSSGRLSISNVDHVPRLSMN 60

Query: 365 LLSVVKLADFVCTISFNST-YVIRDRTS 285
            LSV +LAD    + F+S+  +++DR S
Sbjct: 61  FLSVSQLADLGYDLLFSSSGCIVQDRHS 88


>gb|OMO90284.1| Integrase, catalytic core [Corchorus capsularis]
          Length = 1323

 Score = 47.0 bits (110), Expect(2) = 2e-08
 Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 7/117 (5%)
 Frame = -2

Query: 599 TGMSNNSGISIH-W---SGASHYMVFDNSVLVNCFCIDHSLCIYTAIGTPL-DNQCGDIT 435
           + +S + GIS   W   SGA ++M FD+S+L +   I +S  I+TA G+ +     G ++
Sbjct: 321 SALSTSPGISSKDWIIDSGAFNHMTFDSSILESSKPISYSSSIHTANGSSMFATHIGSVS 380

Query: 434 PNSDSSRHLTLLFVFHIPKLSMQLLSVVKLADFVCTISFNS-TYVIRD-RTSQMIGT 270
                S++++L  V  +P LSM LLSV +L D    + F S   V++D  T +++GT
Sbjct: 381 ----CSKNVSLDDVLLVPSLSMNLLSVGQLCDLGLDVIFRSHGCVVQDCLTGRVVGT 433



 Score = 39.7 bits (91), Expect(2) = 2e-08
 Identities = 25/63 (39%), Positives = 31/63 (49%)
 Frame = -1

Query: 189 LSTSDL*HHLLGPISCPHLKTLVELGVLESFPYSSLSDCTGCRLAK*LDLHFPCSHHMAL 10
           LS   L H  L  ISC  L+ LV  G L S    + + C  C+LAK   L F  S  ++L
Sbjct: 474 LSPFSLWHRRLAHISCSRLQYLVSSGKLGSVKPEASTFCISCKLAKQSALPFNTSESVSL 533

Query: 9   EPF 1
            PF
Sbjct: 534 SPF 536


>dbj|BAH93941.1| Os07g0500000 [Oryza sativa Japonica Group]
          Length = 662

 Score = 46.2 bits (108), Expect(2) = 1e-07
 Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
 Frame = -2

Query: 560 SGASHYMVFDNSVLVNCFCIDHSLCIYTAIGTPLDNQCGDITPNSDSSRHLTLLFVFHIP 381
           SGAS +M  D+S L +C  I +   I+TA GT     C      + S+    +  V  +P
Sbjct: 73  SGASFHMACDDSWLTSCRPIANGATIHTADGT----LCKVTHQGAISAPRFAVPDVSLVP 128

Query: 380 KLSMQLLSVVKLADFVCTISFNST-YVIRDRTS-QMIGT 270
           KLSM L+SV ++ D  C + F+ T   ++DR S  ++GT
Sbjct: 129 KLSMNLISVGQITDKNCFVGFDDTSCFVQDRHSGAVVGT 167



 Score = 37.4 bits (85), Expect(2) = 1e-07
 Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
 Frame = -1

Query: 261 SYGLYQLESLNLPTPSIPHYNGFGLSTSDL*----------HHLLGPISCPHLKTLVELG 112
           S GLY L++LN+P+ S     G  + TS +           HH LG +    L TLV  G
Sbjct: 174 SSGLYILDNLNMPSSS----TGTPIVTSPVCSSACKSFPQWHHRLGHLRGSRLATLVNQG 229

Query: 111 VLESFPYSSLSDCTGCRLAK 52
           VL      +   C GC+L K
Sbjct: 230 VLGPVSIDTNFICKGCKLGK 249


>gb|OMO56344.1| Integrase, catalytic core [Corchorus capsularis]
          Length = 1095

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 39/99 (39%), Positives = 59/99 (59%), Gaps = 3/99 (3%)
 Frame = -2

Query: 560 SGASHYMVFDNSVLVNCFCIDHSLCIYTAIGTPLD-NQCGDITPNSDSSRHLTLLFVFHI 384
           SGAS++M  D+S+L NC  +   L I TA G  +  ++ G +T  S  S   ++  +F+ 
Sbjct: 363 SGASYHMTSDSSILENCLDLSQPLDIQTANGPLMQISKVGSVTTKSYPSGKFSIPNIFYA 422

Query: 383 PKLSMQLLSVVKLADFVCTISFNSTY-VIRDR-TSQMIG 273
           P+LS  LLSV +LAD  C I F+  + V++DR T + IG
Sbjct: 423 PQLSANLLSVGQLADLGCDIWFSDVFCVVQDRHTGKQIG 461


>emb|CAC95126.1| gag-pol polyprotein [Populus deltoides]
          Length = 1382

 Score = 43.9 bits (102), Expect(2) = 1e-06
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
 Frame = -1

Query: 255 GLYQLESLNLPT---PSIPHYNGFGLSTSD----L*HHLLGPISCPHLKTLVELGVLESF 97
           GLY L+ L +P     +    + F LS S     L H  LG +S   L+ L   G L + 
Sbjct: 446 GLYILDELKVPVVVAATTVDLSFFRLSLSSSSFYLWHSRLGHVSSSRLRFLASTGALGNL 505

Query: 96  PYSSLSDCTGCRLAK*LDLHFPCSHHMALEPF 1
               +SDC+GC+LAK   L F  S  ++  PF
Sbjct: 506 KTCDISDCSGCKLAKFSALPFNRSTSVSSSPF 537



 Score = 36.6 bits (83), Expect(2) = 1e-06
 Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 7/113 (6%)
 Frame = -2

Query: 587 NNSGIS-IHW---SGASHYMVFDNSVLVNCFCIDHSLCIYTAIGTPLDNQCGDITPNSDS 420
           ++SGIS   W   SGASH+M  D+S   +   +  S+ + TA GTP+          S  
Sbjct: 333 SSSGISHSEWVLDSGASHHMSPDSSSFTSVSPLS-SIPVMTADGTPMPLA----GVGSVV 387

Query: 419 SRHLTLLFVFHIPKLSMQLLSVVKLADF-VCTISFNSTY-VIRDRTSQ-MIGT 270
           + HL+L  V+ IPKL + L S+ ++ D     + F+ ++  ++D  SQ +IGT
Sbjct: 388 TLHLSLPNVYLIPKLKLNLASIGQICDSGDYLVMFSGSFCCVQDLQSQKLIGT 440


>emb|CAN69462.1| hypothetical protein VITISV_002919 [Vitis vinifera]
          Length = 993

 Score = 47.4 bits (111), Expect(2) = 3e-06
 Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
 Frame = -1

Query: 255 GLYQLESLNLPTPS-----IPHYNGFGLSTSDL*----HHLLGPISCPHLKTLVELGVLE 103
           GLY ++ L LP  S         + F L++S       H  LG IS PHLK L+  G L 
Sbjct: 344 GLYVMDELRLPRVSNLAALSVDLSSFHLTSSSSXFYSWHSRLGHISAPHLKYLISKGFLG 403

Query: 102 SFPYSSLSDCTGCRLAK*LDLHFPCSHHMALEPF 1
           +F    +S C+GC+LAK   L F  S    + PF
Sbjct: 404 NFQTHDISYCSGCKLAKFSALLFNQSVSPFVAPF 437



 Score = 31.6 bits (70), Expect(2) = 3e-06
 Identities = 25/84 (29%), Positives = 40/84 (47%)
 Frame = -2

Query: 590 SNNSGISIHWSGASHYMVFDNSVLVNCFCIDHSLCIYTAIGTPLDNQCGDITPNSDSSRH 411
           S +S + +  S  SH+M   +S  V+      S  + T   TP+          S  + +
Sbjct: 248 SKSSSLWVLDSXTSHHMSLSSSSFVSMCHSPSSXSVITXDSTPMPL----AGVGSICTXY 303

Query: 410 LTLLFVFHIPKLSMQLLSVVKLAD 339
           L+L  V+ IPKL+M L+ V +L D
Sbjct: 304 LSLFNVYCIPKLTMNLIFVSQLYD 327