BLASTX nr result
ID: Ophiopogon22_contig00030759
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon22_contig00030759
(540 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711... 72 1e-20
gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposo... 68 1e-20
gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposo... 71 4e-19
gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposo... 71 4e-19
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar... 74 6e-19
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar... 74 6e-19
gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-... 70 6e-19
gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposo... 64 6e-19
gb|PNX57796.1| putative retrotransposon Ty1-copia subclass prote... 66 8e-19
gb|KYP38864.1| Retrovirus-related Pol polyprotein from transposo... 67 1e-18
gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposo... 67 5e-18
ref|XP_019057165.1| PREDICTED: uncharacterized protein LOC109116... 87 7e-18
gb|PKU72844.1| Retrovirus-related Pol polyprotein from transposo... 66 8e-18
gb|OMO83367.1| Integrase, catalytic core [Corchorus capsularis] 67 8e-18
ref|XP_018625891.1| PREDICTED: uncharacterized protein LOC108944... 84 3e-17
gb|KYP69993.1| Retrovirus-related Pol polyprotein from transposo... 59 5e-17
gb|KYP54549.1| Retrovirus-related Pol polyprotein from transposo... 59 5e-17
gb|KYP69064.1| Retrovirus-related Pol polyprotein from transposo... 59 5e-17
dbj|GAU46320.1| hypothetical protein TSUD_401910 [Trifolium subt... 65 8e-17
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 65 1e-16
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 71.6 bits (174), Expect(2) = 1e-20
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 6/112 (5%)
Frame = -3
Query: 529 LYYLEDSAVTQTRELSAEENH----TRLWHWRLGHTTRESLLGLSRQGLIEGATC-SMDA 365
LY+L+ S VT + +++ E H T+LWH RLGH + LS++ L+ G S++
Sbjct: 386 LYFLQGSTVTGSAHVASSEFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEF 445
Query: 364 CEHCAWDK-EGVKFGAFIHRPVGLLDVVHCYIHGPSKVTSLEGNTLFLLLMN 212
CEHC + K KF IHR G LD +H GP +V SL G F+ +++
Sbjct: 446 CEHCVFGKLHRNKFPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIID 497
Score = 55.8 bits (133), Expect(2) = 1e-20
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Frame = -2
Query: 236 YFVSFVDEYYRHTWVATMKYKYEARRIFIKWKRCVEMQTGRRIMELHGGK*MD---DPFR 66
+FVS +D+Y R TWV MK+K EA + F +WK +E QTG++I L ++ F
Sbjct: 491 FFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFD 550
Query: 65 GICLKQGIRRH 33
C +GI RH
Sbjct: 551 QFCKDEGIARH 561
>gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 593
Score = 67.8 bits (164), Expect(2) = 1e-20
Identities = 42/113 (37%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Frame = -3
Query: 532 NLYYLEDSAVTQTRELSAEENHT----RLWHWRLGHTTRESLLGLSRQGLIEGATC-SMD 368
NLY L+ S + +S + HT RLWH RLGH + ++ LS+Q L+ T +
Sbjct: 372 NLYMLQGSTNLISESISVADKHTLDLTRLWHMRLGHMSERGMMVLSKQKLLRDHTVKELK 431
Query: 367 ACEHCAWDK-EGVKFGAFIHRPVGLLDVVHCYIHGPSKVTSLEGNTLFLLLMN 212
CEHC K KF H LD VH GPS+V SL G FL +++
Sbjct: 432 FCEHCVLGKHHRSKFPKAQHTTKSTLDYVHSNCWGPSRVPSLGGGRYFLSIID 484
Score = 59.7 bits (143), Expect(2) = 1e-20
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Frame = -2
Query: 236 YFVSFVDEYYRHTWVATMKYKYEARRIFIKWKRCVEMQTGRRIMELHGGK*MD---DPFR 66
YF+S +D+Y R TW+ MK+K +A + F +WK VE QTG+RI L ++ F
Sbjct: 478 YFLSIIDDYSRMTWIFIMKHKNQAFKYFKEWKILVENQTGKRIKRLRTDNSLEFCSAEFN 537
Query: 65 GICLKQGIRRHYS 27
C K+GI R Y+
Sbjct: 538 DYCKKEGIVRQYT 550
>gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1032
Score = 71.2 bits (173), Expect(2) = 4e-19
Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 5/105 (4%)
Frame = -3
Query: 538 VRNLYYLEDSAVTQTRELSA---EENHTRLWHWRLGHTTRESLLGLSRQGLI-EGATCSM 371
+ +LY L+ S VT + +S+ +++ T+LWH RLGH + + + LS+QGL+ +
Sbjct: 95 IGSLYILQGSIVTGSAAVSSSMSDKDATKLWHMRLGHMSEKGMHLLSKQGLLGNQGIGKL 154
Query: 370 DACEHCAWDKE-GVKFGAFIHRPVGLLDVVHCYIHGPSKVTSLEG 239
+ CEHC + K+ V F HR G LD +H + GPSKV S G
Sbjct: 155 EFCEHCVFGKQKRVSFSTATHRTKGTLDYIHSDLWGPSKVPSYGG 199
Score = 50.8 bits (120), Expect(2) = 4e-19
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = -2
Query: 236 YFVSFVDEYYRHTWVATMKYKYEARRIFIKWKRCVEMQTGRRIMEL---HGGK*MDDPFR 66
Y ++ +D++ R WV +++K E F KWK VE QTG+++ +L +G + + F
Sbjct: 202 YMMTIIDDFSRKVWVYFLRHKNETFPTFKKWKTLVETQTGKKVKKLRTDNGLEFCEGDFN 261
Query: 65 GICLKQGIRRH 33
C GI RH
Sbjct: 262 EFCANHGIARH 272
>gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 690
Score = 71.2 bits (173), Expect(2) = 4e-19
Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 5/105 (4%)
Frame = -3
Query: 538 VRNLYYLEDSAVTQTRELSA---EENHTRLWHWRLGHTTRESLLGLSRQGLI-EGATCSM 371
+ +LY L+ S VT + +S+ +++ T+LWH RLGH + + + LS+QGL+ +
Sbjct: 391 IGSLYILQGSIVTGSAAVSSSMSDKDATKLWHMRLGHMSEKGMHLLSKQGLLGNQGIGKL 450
Query: 370 DACEHCAWDKE-GVKFGAFIHRPVGLLDVVHCYIHGPSKVTSLEG 239
+ CEHC + K+ V F HR G LD +H + GPSKV S G
Sbjct: 451 EFCEHCVFGKQKRVSFSTATHRTKGTLDYIHSDLWGPSKVPSYGG 495
Score = 50.8 bits (120), Expect(2) = 4e-19
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = -2
Query: 236 YFVSFVDEYYRHTWVATMKYKYEARRIFIKWKRCVEMQTGRRIMEL---HGGK*MDDPFR 66
Y ++ +D++ R WV +++K E F KWK VE QTG+++ +L +G + + F
Sbjct: 498 YMMTIIDDFSRKVWVYFLRHKNETFPTFKKWKTLVETQTGKKVKKLRTDNGLEFCEGDFN 557
Query: 65 GICLKQGIRRH 33
C GI RH
Sbjct: 558 EFCANHGIARH 568
>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
Length = 2351
Score = 73.6 bits (179), Expect(2) = 6e-19
Identities = 42/114 (36%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Frame = -3
Query: 535 RNLYYLEDSAVTQTRELSAEEN----HTRLWHWRLGHTTRESLLGLSRQGLIEG-ATCSM 371
R LY+L+ S+VT +S+ ++ T+LWH RLGH + L LS++GL+ G T +
Sbjct: 892 RGLYFLDGSSVTGVAGVSSSDDLDSDTTKLWHMRLGHMSERGLSVLSKRGLLSGQCTGKL 951
Query: 370 DACEHCAWDKE-GVKFGAFIHRPVGLLDVVHCYIHGPSKVTSLEGNTLFLLLMN 212
+ CEHC + K+ VKF IH+ G +D H + GPS S G L ++
Sbjct: 952 NFCEHCVFGKQTRVKFSTGIHKTKGTVDYFHSDLWGPSPTISKGGYRYLLTFID 1005
Score = 48.1 bits (113), Expect(2) = 6e-19
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = -2
Query: 236 YFVSFVDEYYRHTWVATMKYKYEARRIFIKWKRCVEMQTGRRIMEL---HGGK*MDDPFR 66
Y ++F+D+Y R WV +K KYE F ++K +E QTG++I +G + F
Sbjct: 999 YLLTFIDDYSRKVWVYFLKSKYEVLINFKQFKALIENQTGKKIKRFRTDNGLEFCSGEFN 1058
Query: 65 GICLKQGIRRH 33
C +GI RH
Sbjct: 1059 EFCKNEGIVRH 1069
>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
Length = 1841
Score = 73.6 bits (179), Expect(2) = 6e-19
Identities = 42/114 (36%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Frame = -3
Query: 535 RNLYYLEDSAVTQTRELSAEEN----HTRLWHWRLGHTTRESLLGLSRQGLIEG-ATCSM 371
R LY+L+ S+VT +S+ ++ T+LWH RLGH + L LS++GL+ G T +
Sbjct: 913 RGLYFLDGSSVTGVAGVSSSDDLDSDTTKLWHMRLGHMSERGLSVLSKRGLLSGQCTGKL 972
Query: 370 DACEHCAWDKE-GVKFGAFIHRPVGLLDVVHCYIHGPSKVTSLEGNTLFLLLMN 212
+ CEHC + K+ VKF IH+ G +D H + GPS S G L ++
Sbjct: 973 NFCEHCVFGKQTRVKFSTGIHKTKGTVDYFHSDLWGPSPTISKGGYRYLLTFID 1026
Score = 48.1 bits (113), Expect(2) = 6e-19
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = -2
Query: 236 YFVSFVDEYYRHTWVATMKYKYEARRIFIKWKRCVEMQTGRRIMEL---HGGK*MDDPFR 66
Y ++F+D+Y R WV +K KYE F ++K +E QTG++I +G + F
Sbjct: 1020 YLLTFIDDYSRKVWVYFLKSKYEVLINFKQFKALIENQTGKKIKRFRTDNGLEFCSGEFN 1079
Query: 65 GICLKQGIRRH 33
C +GI RH
Sbjct: 1080 EFCKNEGIVRH 1090
>gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
gb|ABA92543.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
Length = 1170
Score = 70.1 bits (170), Expect(2) = 6e-19
Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Frame = -3
Query: 532 NLYYLEDSA----VTQTRELSAEENHTRLWHWRLGHTTRESLLGLSRQGLIEGATC-SMD 368
NLY+L+ + V L + + T LWH RLGH + L LS++GL++G + +
Sbjct: 442 NLYHLQGTTILGNVATVSALLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLK 501
Query: 367 ACEHCAWDKEG-VKFGAFIHRPVGLLDVVHCYIHGPSKVTSLEG 239
CEHC + K VKF H G+LD VH + GP++ TS G
Sbjct: 502 FCEHCIFGKHNRVKFNTSTHTTEGILDYVHSNLWGPARKTSFGG 545
Score = 51.6 bits (122), Expect(2) = 6e-19
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Frame = -2
Query: 245 GR*YFVSFVDEYYRHTWVATMKYKYEARRIFIKWKRCVEMQTGRRIMEL---HGGK*MDD 75
G Y ++ VD+Y R W +K+KY+A +F +WK V+ QT R++ L +G +
Sbjct: 545 GARYMMTTVDDYSRKVWSYFLKHKYQAFDVFKEWKTMVKKQTERKVKILRTDNGMELCSK 604
Query: 74 PFRGICLKQGIRRHYS 27
F+ C +GI RHY+
Sbjct: 605 IFKSYCKCEGIVRHYT 620
>gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 609
Score = 63.9 bits (154), Expect(2) = 6e-19
Identities = 40/113 (35%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Frame = -3
Query: 532 NLYYLEDSAVTQTRELSAEENHT----RLWHWRLGHTTRESLLGLSRQGLIEGATCS-MD 368
NLY L+ S + +S + HT LWH RLGH + ++ L +Q L+ T +
Sbjct: 320 NLYMLQGSTNLISESVSVADKHTPDLTHLWHMRLGHMSERGMMVLRKQKLLGDHTVKELK 379
Query: 367 ACEHCAWDKEG-VKFGAFIHRPVGLLDVVHCYIHGPSKVTSLEGNTLFLLLMN 212
CEHC K +KF H LD VH GPS+V SL G FL +++
Sbjct: 380 FCEHCVVGKHHRIKFPKAQHTTKSTLDYVHSDCWGPSRVPSLGGGRYFLSIID 432
Score = 57.8 bits (138), Expect(2) = 6e-19
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Frame = -2
Query: 236 YFVSFVDEYYRHTWVATMKYKYEARRIFIKWKRCVEMQTGRRIMEL---HGGK*MDDPFR 66
YF+S +D+Y TW+ MK+K +A + F +WK VE QTG+RI L +G + F
Sbjct: 426 YFLSIIDDYSGMTWIFIMKHKNQAFKYFKEWKILVENQTGKRIKRLRTDNGLEFCSAEFN 485
Query: 65 GICLKQGIRRHYS 27
C K+GI R Y+
Sbjct: 486 DYCKKEGIVRQYT 498
>gb|PNX57796.1| putative retrotransposon Ty1-copia subclass protein, partial
[Trifolium pratense]
Length = 285
Score = 65.9 bits (159), Expect(2) = 8e-19
Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 7/111 (6%)
Frame = -3
Query: 535 RNLYYLEDSAVTQTRELSAEENH-----TRLWHWRLGHTTRESLLGLSRQGLIEGATCS- 374
RNLY L VT + + TR+WH RLGH + + L L +GL++
Sbjct: 30 RNLYTLMGETVTGDLAVGINRSKDQTECTRMWHMRLGHMSEKGLSLLGEKGLLKNMEKPC 89
Query: 373 MDACEHCAWDK-EGVKFGAFIHRPVGLLDVVHCYIHGPSKVTSLEGNTLFL 224
M+ CEHC + K ++F + H+ G+LD VH + GP+ VTS G+ F+
Sbjct: 90 MEFCEHCVYGKAHRLRFSSSKHKSRGILDYVHTDVWGPAPVTSKGGSRYFV 140
Score = 55.5 bits (132), Expect(2) = 8e-19
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Frame = -2
Query: 245 GR*YFVSFVDEYYRHTWVATMKYKYEARRIFIKWKRCVEMQTGRRIMEL---HGGK*MDD 75
G YFV++VD++ R+ W+ +K+K E F WK VE +TGR++ L +G + D
Sbjct: 135 GSRYFVTYVDDHSRYAWIYFLKHKNEVFDNFKCWKAMVENRTGRKLKTLRSDNGTEYTDG 194
Query: 74 PFRGICLKQGIRRHYS 27
F+ C ++GI RH++
Sbjct: 195 AFKRFCDQEGIVRHWT 210
>gb|KYP38864.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 507
Score = 67.0 bits (162), Expect(2) = 1e-18
Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 6/113 (5%)
Frame = -3
Query: 532 NLYYLEDSAVTQTRELSAEENH----TRLWHWRLGHTTRESLLGLSRQGLIEGATC-SMD 368
NLY L+ S + + +S E + T LWH RLGH + ++ LSRQ L+ T +
Sbjct: 18 NLYMLQGSTSSISESVSVAEKNIPDLTYLWHMRLGHMSERGMMILSRQQLLGNHTVKELR 77
Query: 367 ACEHCAWDKE-GVKFGAFIHRPVGLLDVVHCYIHGPSKVTSLEGNTLFLLLMN 212
CEHC + K+ +KF H LD +H GPS+V SL G FL +++
Sbjct: 78 FCEHCVFGKQHRIKFPKAQHSTKSTLDYIHSDCWGPSQVPSLGGGRYFLSIID 130
Score = 53.5 bits (127), Expect(2) = 1e-18
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Frame = -2
Query: 236 YFVSFVDEYYRHTWVATMKYKYEARRIFIKWKRCVEMQTGRRIMEL---HGGK*MDDPFR 66
YF+S +D+Y R TW+ K+K +A + F +WK +E QT +R+ L +G + F
Sbjct: 124 YFLSIIDDYSRMTWIFITKHKNQAFKCFKEWKILMEKQTSKRVKRLRTDNGLEFCSKEFN 183
Query: 65 GICLKQGIRRHYS 27
C +GI R Y+
Sbjct: 184 DYCKAEGIARQYT 196
>gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 448
Score = 67.0 bits (162), Expect(2) = 5e-18
Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 6/113 (5%)
Frame = -3
Query: 532 NLYYLEDSAVTQTRELSAEENH----TRLWHWRLGHTTRESLLGLSRQGLIEGATC-SMD 368
NLY L+ S + + +S E + T LWH RLGH + ++ LSRQ L+ T +
Sbjct: 159 NLYMLQGSTSSISESVSVAEKNIPDLTYLWHMRLGHMSERGMMILSRQQLLGNHTVKELR 218
Query: 367 ACEHCAWDKE-GVKFGAFIHRPVGLLDVVHCYIHGPSKVTSLEGNTLFLLLMN 212
CEHC + K+ +KF H LD +H GPS+V SL G FL +++
Sbjct: 219 FCEHCVFGKQHRIKFPKAQHSTKSTLDYIHSDCWGPSQVPSLGGGRYFLSIID 271
Score = 51.6 bits (122), Expect(2) = 5e-18
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = -2
Query: 236 YFVSFVDEYYRHTWVATMKYKYEARRIFIKWKRCVEMQTGRRIMEL---HGGK*MDDPFR 66
YF+S +D+Y R TW+ K+K +A + F +WK +E Q +R+ L +G + F
Sbjct: 265 YFLSIIDDYSRMTWIFITKHKNQAFKCFKEWKILMEKQISKRVKRLRTDNGLEFCSKEFN 324
Query: 65 GICLKQGIRRHYS 27
C +GI R Y+
Sbjct: 325 DFCKAEGIARQYT 337
>ref|XP_019057165.1| PREDICTED: uncharacterized protein LOC109116374, partial [Tarenaya
hassleriana]
Length = 209
Score = 87.0 bits (214), Expect = 7e-18
Identities = 46/104 (44%), Positives = 64/104 (61%), Gaps = 6/104 (5%)
Frame = -3
Query: 532 NLYYLEDSAVTQTRELSAEENH----TRLWHWRLGHTTRESLLGLSRQGLIEGA-TCSMD 368
NLYY + S V T ++A E+ TRLWH RLGH ++L L +QG+++GA C ++
Sbjct: 105 NLYYFKGSTVIGTVAVTAGEDKDSEVTRLWHMRLGHPGEKALQNLVKQGVLKGARLCKLE 164
Query: 367 ACEHCAWDKEG-VKFGAFIHRPVGLLDVVHCYIHGPSKVTSLEG 239
CEHC K+ VKFG IH G+LD +H + GP++ TSL G
Sbjct: 165 FCEHCVLGKQSKVKFGTAIHNTEGILDYIHSDVWGPTRETSLGG 208
>gb|PKU72844.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 993
Score = 65.9 bits (159), Expect(2) = 8e-18
Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Frame = -3
Query: 529 LYYLEDSAVTQTRELSAEEN--HTRLWHWRLGHTTRESLLGLSRQGLI-EGATCSMDACE 359
LY L+ + + ++A++N T+LWH RLGH + L+ L +QGL + +D CE
Sbjct: 337 LYVLQGATLVGETHVTAKQNLDKTKLWHQRLGHLSDRGLIELQKQGLFGNDSIAKIDFCE 396
Query: 358 HCAWDK-EGVKFGAFIHRPVGLLDVVHCYIHGPSKVTSLEGNTLFL 224
C K + F HR G+LD +H + GP++V + GN FL
Sbjct: 397 SCIIGKSHRLSFKLSTHRAEGILDYIHSDLWGPARVATHGGNRYFL 442
Score = 52.0 bits (123), Expect(2) = 8e-18
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = -2
Query: 245 GR*YFVSFVDEYYRHTWVATMKYKYEARRIFIKWKRCVEMQTGRRIMEL---HGGK*MDD 75
G YF+SF+D+Y R W+ +K K E F++WK VE Q R++ L +G + ++
Sbjct: 437 GNRYFLSFIDDYSRKVWIFLLKSKDETFSKFLEWKSMVENQKNRKLKVLRTDNGLEFCNE 496
Query: 74 PFRGICLKQGIRRH 33
F C GI RH
Sbjct: 497 SFNKFCSDSGIVRH 510
>gb|OMO83367.1| Integrase, catalytic core [Corchorus capsularis]
Length = 785
Score = 67.0 bits (162), Expect(2) = 8e-18
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Frame = -3
Query: 505 VTQTRELSAEENHTRLWHWRLGHTTRESLLGLSRQGLIEGATC-SMDACEHCAWDKE-GV 332
V + L + T LWH RLGH + + L LS++GL++G+ C + CE C K+ GV
Sbjct: 386 VAVSESLGDSNDRTELWHLRLGHMSEQGLSILSKRGLLDGSECGKLKCCETCVLGKQRGV 445
Query: 331 KFGAFIHRPVGLLDVVHCYIHGPSKVTS 248
KF + H G+LD VH + GP+ V S
Sbjct: 446 KFSSGKHTSKGILDYVHSDLWGPAPVES 473
Score = 50.8 bits (120), Expect(2) = 8e-18
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = -2
Query: 236 YFVSFVDEYYRHTWVATMKYKYEARRIFIKWKRCVEMQTGRRIMEL---HGGK*MDDPFR 66
YFV+F+D+Y + WV +K K E F +WK +E T R+I L +G + F
Sbjct: 479 YFVTFIDDYSKKVWVYFLKTKDELFDWFKEWKIMIEKHTSRQIKTLRTDNGLEFCGQEFN 538
Query: 65 GICLKQGIRRHYS 27
C K+GI RH++
Sbjct: 539 EFCKKEGILRHHT 551
>ref|XP_018625891.1| PREDICTED: uncharacterized protein LOC108944919, partial [Nicotiana
tomentosiformis]
Length = 148
Score = 84.0 bits (206), Expect = 3e-17
Identities = 47/113 (41%), Positives = 66/113 (58%), Gaps = 6/113 (5%)
Frame = -3
Query: 532 NLYYLEDSAVTQTRELSAEENH----TRLWHWRLGHTTRESLLGLSRQGLIEGA-TCSMD 368
N+Y S V T +++ ++ TRLWH RLGH +SL LS QGL++G TC+++
Sbjct: 19 NMYRYRGSTVIGTATVTSSDDKEVEATRLWHMRLGHAGGKSLKALSNQGLLKGVKTCNLE 78
Query: 367 ACEHCAWDKE-GVKFGAFIHRPVGLLDVVHCYIHGPSKVTSLEGNTLFLLLMN 212
CEHC K+ VKFG IH G+LD V+ I G SK+ SL G F+ ++
Sbjct: 79 FCEHCVKGKQIRVKFGTAIHNTKGILDYVYSDIWGSSKIPSLGGKHYFVTFVD 131
>gb|KYP69993.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 210
Score = 58.9 bits (141), Expect(2) = 5e-17
Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Frame = -3
Query: 532 NLYYLEDSAVTQTRELSAEENH----TRLWHWRLGHTTRESLLGLSRQGLIEGATC-SMD 368
NLY L+ S + + +S + + T LWH RLGH + ++ LSRQ L+ T +
Sbjct: 13 NLYMLQGSTSSISESVSVAKKNIHDLTYLWHMRLGHMSERGMMILSRQQLLGNHTVKELR 72
Query: 367 ACEHCAWDKE-GVKFGAFIHRPVGLLDVVHCYIHGPSKVTSLEGNTLFLLLMN 212
E C + K+ +KF H LD +H GPS+V SL G FL +++
Sbjct: 73 FYEQCVFGKQHRIKFPKAQHSTKSTLDYIHSDCRGPSQVPSLGGGRYFLSIID 125
Score = 56.2 bits (134), Expect(2) = 5e-17
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Frame = -2
Query: 236 YFVSFVDEYYRHTWVATMKYKYEARRIFIKWKRCVEMQTGRRIMEL---HGGK*MDDPFR 66
YF+S +D Y R TW+ MK+K +A R F +WK +E QT +R+ L +G + F
Sbjct: 119 YFLSIIDNYSRMTWIFIMKHKNQAFRCFKEWKILMEKQTSKRVKRLRTDNGLEFCTKEFN 178
Query: 65 GICLKQGIRRHYS 27
C +GI R Y+
Sbjct: 179 DFCKAEGIARQYT 191
>gb|KYP54549.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 210
Score = 58.9 bits (141), Expect(2) = 5e-17
Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Frame = -3
Query: 532 NLYYLEDSAVTQTRELSAEENH----TRLWHWRLGHTTRESLLGLSRQGLIEGATC-SMD 368
NLY L+ S + + +S + + T LWH RLGH + ++ LSRQ L+ T +
Sbjct: 13 NLYMLQGSTSSISESVSVAKKNIHDLTYLWHMRLGHMSERGMMILSRQQLLGNHTVKELR 72
Query: 367 ACEHCAWDKE-GVKFGAFIHRPVGLLDVVHCYIHGPSKVTSLEGNTLFLLLMN 212
E C + K+ +KF H LD +H GPS+V SL G FL +++
Sbjct: 73 FYEQCVFGKQHRIKFPKAQHSTKSTLDYIHSDCRGPSQVPSLGGGRYFLSIID 125
Score = 56.2 bits (134), Expect(2) = 5e-17
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Frame = -2
Query: 236 YFVSFVDEYYRHTWVATMKYKYEARRIFIKWKRCVEMQTGRRIMEL---HGGK*MDDPFR 66
YF+S +D Y R TW+ MK+K +A R F +WK +E QT +R+ L +G + F
Sbjct: 119 YFLSIIDNYSRMTWIFIMKHKNQAFRCFKEWKILMEKQTSKRVKRLRTDNGLEFCTKEFN 178
Query: 65 GICLKQGIRRHYS 27
C +GI R Y+
Sbjct: 179 DFCKAEGIARQYT 191
>gb|KYP69064.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 205
Score = 58.9 bits (141), Expect(2) = 5e-17
Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Frame = -3
Query: 532 NLYYLEDSAVTQTRELSAEENH----TRLWHWRLGHTTRESLLGLSRQGLIEGATC-SMD 368
NLY L+ S + + +S + + T LWH RLGH + ++ LSRQ L+ T +
Sbjct: 8 NLYMLQGSTSSISESVSVAKKNIHDLTYLWHMRLGHMSERGMMILSRQQLLGNHTVKELR 67
Query: 367 ACEHCAWDKE-GVKFGAFIHRPVGLLDVVHCYIHGPSKVTSLEGNTLFLLLMN 212
E C + K+ +KF H LD +H GPS+V SL G FL +++
Sbjct: 68 FYEQCVFGKQHRIKFPKAQHSTKSTLDYIHSDCRGPSQVPSLGGGRYFLSIID 120
Score = 56.2 bits (134), Expect(2) = 5e-17
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Frame = -2
Query: 236 YFVSFVDEYYRHTWVATMKYKYEARRIFIKWKRCVEMQTGRRIMEL---HGGK*MDDPFR 66
YF+S +D Y R TW+ MK+K +A R F +WK +E QT +R+ L +G + F
Sbjct: 114 YFLSIIDNYSRMTWIFIMKHKNQAFRCFKEWKILMEKQTSKRVKRLRTDNGLEFCTKEFN 173
Query: 65 GICLKQGIRRHYS 27
C +GI R Y+
Sbjct: 174 DFCKAEGIARQYT 186
>dbj|GAU46320.1| hypothetical protein TSUD_401910 [Trifolium subterraneum]
Length = 1006
Score = 65.1 bits (157), Expect(2) = 8e-17
Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 4/113 (3%)
Frame = -3
Query: 538 VRNLYYLEDSAVTQTRELSAEENH--TRLWHWRLGHTTRESLLGLSRQGLI-EGATCSMD 368
+ LY L+ S V +++ EN T+LWH RLGH + L+ L++QGL+ + +D
Sbjct: 217 MNGLYILKGSTVISNALVTSVENADITKLWHLRLGHVSERGLVELAKQGLLGQEKLNKLD 276
Query: 367 ACEHCAWDKE-GVKFGAFIHRPVGLLDVVHCYIHGPSKVTSLEGNTLFLLLMN 212
C++C K+ VKFG +H+ + VH + GP+ V + G + FL +++
Sbjct: 277 FCDNCTLGKQHKVKFGVGVHKSSRPFEYVHSDLWGPASVPTHGGGSYFLSIID 329
Score = 49.3 bits (116), Expect(2) = 8e-17
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = -2
Query: 236 YFVSFVDEYYRHTWVATMKYKYEARRIFIKWKRCVEMQTGRRIMEL---HGGK*MDDPFR 66
YF+S +D+Y R WV +K K + F +W +E Q G ++ L +G + + + F
Sbjct: 323 YFLSIIDDYSRRVWVHIIKNKSDVFEKFKEWHTLIENQIGTKLKVLRTDNGLEFVSEQFN 382
Query: 65 GICLKQGIRRH 33
C K+GI+RH
Sbjct: 383 EFCRKKGIKRH 393
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 65.5 bits (158), Expect(2) = 1e-16
Identities = 41/99 (41%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Frame = -3
Query: 529 LYYLEDSAVTQTRELSAEENHTRLWHWRLGHTTRESLLGLSRQGLIEGA-TCSMDACEHC 353
+Y L S+V T + E+N T LWH RLGH + + L LS+QGL+ GA T + CE C
Sbjct: 725 IYTLMGSSVLGTAAVE-EDNCTELWHRRLGHMSEKGLSILSKQGLLSGAETGKLKFCETC 783
Query: 352 AWDKE-GVKFGAFIHRPVGLLDVVHCYIHGPSKVTSLEG 239
K+ VKF H G+L+ +H + GPS V S G
Sbjct: 784 VMGKQRRVKFSMGSHTTNGVLEYIHSDLWGPSPVESHSG 822
Score = 48.5 bits (114), Expect(2) = 1e-16
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Frame = -2
Query: 236 YFVSFVDEYYRHTWVATMKYKYEARRIFIKWKRCVEMQTGRRIMEL---HGGK*MDDPFR 66
Y+V+F+D++ R WV +K K E F +WK VE +TG+ + L +G + + F
Sbjct: 825 YYVTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFD 884
Query: 65 GICLKQGIRRH 33
C K+GI RH
Sbjct: 885 EFCRKEGIVRH 895