BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon22_contig00027642
         (507 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD63142.1| Retrotransposon gag protein [Asparagus officinalis]     56   7e-06

>gb|ABD63142.1| Retrotransposon gag protein [Asparagus officinalis]
          Length = 1788

 Score = 55.8 bits (133), Expect = 7e-06
 Identities = 39/110 (35%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
 Frame = +2

Query: 53  HNLGWMNHPNFTWNQATFQRRVSTNAPHYLNPQFQMHNTGSVHNPQAFANPYF----THP 220
           +N GW NHPNF WNQ       + N     N QF   NT   + P  F+NP F     HP
Sbjct: 241 YNPGWRNHPNFAWNQG--NSHGNQNFIPASNQQFPRGNTVPFNAPNNFSNPPFPNQHPHP 298

Query: 221 FNTSSLPSQSIXXXXXXXXXXXXEQKMRLNVQEKNLDVMAKSSARTTSSL 370
              ++ PS S             +   RL+V EK L+ M K+S +TT+ L
Sbjct: 299 HQHTN-PSNS-------------DHDKRLSVLEKGLEAMIKASTQTTNML 334