BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon22_contig00025514
         (1646 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v...    63   1e-22
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]               60   2e-17
gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]           52   3e-17
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]               60   4e-17
gb|KOM25686.1| hypothetical protein LR48_Vigan153s000800 [Vigna ...    64   6e-16
gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-...    54   2e-14
gb|KYP62383.1| Retrovirus-related Pol polyprotein from transposo...    50   3e-14
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group...    59   6e-14
gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subc...    56   1e-13
gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa...    62   1e-13
gb|KYP40337.1| Retrovirus-related Pol polyprotein from transposo...    50   2e-12
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]          52   2e-12
gb|PON66676.1| Ribonuclease H-like domain containing protein [Pa...    68   6e-12
gb|KYP40338.1| Retrovirus-related Pol polyprotein from transposo...    50   6e-12
gb|PKA55182.1| Retrovirus-related Pol polyprotein from transposo...    45   9e-12
gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposo...    54   9e-12
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]      59   1e-11
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...    57   2e-11
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja...    59   2e-11
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...    58   2e-11

>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 813

 Score = 63.2 bits (152), Expect(4) = 1e-22
 Identities = 30/66 (45%), Positives = 46/66 (69%)
 Frame = +2

Query: 470 MKRALVKKMHYLMSSNKANAIIWTKALKCACYIINRLSSAAIEGKIPLKVWSRKIVSDYD 649
           M + LV+K+  ++S+ +     W +A+  A +++NRL S+AI+GK PL+VWS K  +DYD
Sbjct: 523 MNKTLVEKVCCMLSNAELGREFWAEAVTYAQHLVNRLPSSAIDGKTPLEVWSGKPATDYD 582

Query: 650 SL*VFG 667
           SL VFG
Sbjct: 583 SLHVFG 588



 Score = 51.6 bits (122), Expect(4) = 1e-22
 Identities = 21/52 (40%), Positives = 38/52 (73%)
 Frame = +3

Query: 162 VHICIQRPSKPVSLEGKCYFVSFIDEYSRYMWVATMKHRNEAMKLFHRVEQE 317
           VH  +  P+K  S+ G+ YFV+F+D++SR +WV TMK++N+ +++F + + E
Sbjct: 419 VHSDVWGPAKTPSIGGRHYFVTFVDDFSRRVWVFTMKNKNDVLEIFLKWKAE 470



 Score = 32.0 bits (71), Expect(4) = 1e-22
 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
 Frame = +1

Query: 697 KDCVFVGIKL-VLGYKLWYPKSRCIILSGNSVFDETSVLKLSSSMHVESS--QAKTILQQ 867
           K  +F+G    V GY+LW  + +  I+S +  FDE+ +LK  +    +S+  Q + + +Q
Sbjct: 605 KKALFMGFSPGVKGYRLWCLEKKKTIISRDVTFDESVMLKKVNPEGTDSTPQQVECVRKQ 664

Query: 868 VEID 879
           VE +
Sbjct: 665 VEFE 668



 Score = 30.4 bits (67), Expect(4) = 1e-22
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
 Frame = +1

Query: 298 FIEWNRKKCAELQTGRRIREI---HGGEQKGDPFHGL-SETGIRRYYSSQGT 441
           F++W  +   E  TGR+I+ +   +GGE K DPF  +  + GI R+++ + T
Sbjct: 464 FLKWKAE--VENHTGRKIKVLQTDNGGEYKSDPFLNVCQDCGIVRHFTVRKT 513


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 60.5 bits (145), Expect(3) = 2e-17
 Identities = 30/71 (42%), Positives = 43/71 (60%)
 Frame = +2

Query: 470 MKRALVKKMHYLMSSNKANAIIWTKALKCACYIINRLSSAAIEGKIPLKVWSRKIVSDYD 649
           M R L+++   ++ +       W +A+K ACY+INR  S AI+ K P+++W  K V DY 
Sbjct: 588 MNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPV-DYS 646

Query: 650 SL*VFGCPASV 682
           SL VFGCP  V
Sbjct: 647 SLHVFGCPVYV 657



 Score = 43.1 bits (100), Expect(3) = 2e-17
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
 Frame = +3

Query: 186 SKPVSLEGKCYFVSFIDEYSRYMWVATMKHRNEAMKLFH----RVEQEKMCRIADWKEDQ 353
           S  +SL G  YFVSFID+YSR +WV  +K +++   +F     ++E E   +I   + D 
Sbjct: 492 SPEISLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETRKKIKCLRTDN 551

Query: 354 G 356
           G
Sbjct: 552 G 552



 Score = 35.8 bits (81), Expect(3) = 2e-17
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = +1

Query: 697 KDCVFVGIK-LVLGYKLWYPKSRCIILSGNSVFDETSVLKLSSSMHVESSQAKTILQQVE 873
           + C+F+G    V GY+LW P +R +++S + VF E    +L S    +S+  +T + Q+E
Sbjct: 672 RKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAEN---ELQSEQKNDSTSKETAIVQME 728


>gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]
          Length = 876

 Score = 52.0 bits (123), Expect(3) = 3e-17
 Identities = 25/71 (35%), Positives = 40/71 (56%)
 Frame = +2

Query: 470 MKRALVKKMHYLMSSNKANAIIWTKALKCACYIINRLSSAAIEGKIPLKVWSRKIVSDYD 649
           M  +L ++   L      +   W + +  ACY+INR   A++EGK+  +VW+ K + D D
Sbjct: 507 MNMSLTERARCLQLKAGLSKGFWAETINMACYLINRSPRASLEGKVAEEVWTGKPI-DLD 565

Query: 650 SL*VFGCPASV 682
           +L +FGCP  V
Sbjct: 566 NLRIFGCPTFV 576



 Score = 43.9 bits (102), Expect(3) = 3e-17
 Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
 Frame = +1

Query: 697 KDCVFVGI-KLVLGYKLWYPKSRCIILSGNSVFDETSVLKLSSSMHV-ESSQAKTILQQV 870
           K C+FVG  K V G+KLW P S+ ++LS + VFDE  +LK S    V ES+   +  + +
Sbjct: 591 KKCIFVGYSKGVKGFKLWDPVSKKMVLSRDVVFDEQFMLKQSRETEVTESAGGSSGKEVI 650

Query: 871 EIDL 882
           +++L
Sbjct: 651 QVEL 654



 Score = 43.1 bits (100), Expect(3) = 3e-17
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
 Frame = +3

Query: 162 VHICIQRPSKPVSLEGKCYFVSFIDEYSRYMWVATMKHRNEAMKLFH----RVEQEKMCR 329
           VH  +  P++  S+ G  YFV+F D++SR +WV  MK ++E    F      VE +   +
Sbjct: 403 VHSDVWGPTREASMGGSRYFVTFTDDFSRKLWVYFMKQKSEVFSKFKLWKAEVENQTGRK 462

Query: 330 IADWKEDQG 356
           I   + D G
Sbjct: 463 IKYLRSDNG 471


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 59.7 bits (143), Expect(3) = 4e-17
 Identities = 30/71 (42%), Positives = 42/71 (59%)
 Frame = +2

Query: 470 MKRALVKKMHYLMSSNKANAIIWTKALKCACYIINRLSSAAIEGKIPLKVWSRKIVSDYD 649
           M R L+++   ++ +       W +A K ACY+INR  S AI+ K P+++W  K V DY 
Sbjct: 588 MNRTLLERTRAMLKTAGMAKSFWAEAAKTACYVINRSPSTAIDLKTPMEMWKGKPV-DYS 646

Query: 650 SL*VFGCPASV 682
           SL VFGCP  V
Sbjct: 647 SLHVFGCPVYV 657



 Score = 42.7 bits (99), Expect(3) = 4e-17
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
 Frame = +3

Query: 186 SKPVSLEGKCYFVSFIDEYSRYMWVATMKHRNEAMKLFH----RVEQEKMCRIADWKEDQ 353
           S  +SL G  YFVSFID+YSR +WV  +K +++   +F     ++E E   +I   + D 
Sbjct: 492 SPEISLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETEKKIKCLRTDN 551

Query: 354 G 356
           G
Sbjct: 552 G 552



 Score = 35.8 bits (81), Expect(3) = 4e-17
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = +1

Query: 697 KDCVFVGIK-LVLGYKLWYPKSRCIILSGNSVFDETSVLKLSSSMHVESSQAKTILQQVE 873
           + C+F+G    V GY+LW P +R +++S + VF E    +L S    +S+  +T + Q+E
Sbjct: 672 RKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAEN---ELQSEQKNDSTSKETAIVQME 728


>gb|KOM25686.1| hypothetical protein LR48_Vigan153s000800 [Vigna angularis]
          Length = 473

 Score = 63.5 bits (153), Expect(3) = 6e-16
 Identities = 39/124 (31%), Positives = 61/124 (49%)
 Frame = +2

Query: 311 TGKNVPNCRLEGGSGRYTEVSKRVIRSTGCLKQAYDDTILPKEQRICN*MRWSMKRALVK 490
           TGK +   R + G G YT+           +K+ +     P++  +       M R L++
Sbjct: 152 TGKMIKCLRTDNG-GEYTDGDFLAFCKQEGIKRQFTVAHTPQQNGVAE----RMNRTLLE 206

Query: 491 KMHYLMSSNKANAIIWTKALKCACYIINRLSSAAIEGKIPLKVWSRKIVSDYDSL*VFGC 670
           +   ++ +       W +A+K ACY+INR  S AI  K P+++W  K  +DY SL VFGC
Sbjct: 207 RTRAMLKTTGLAKSFWAEAVKTACYLINRSPSTAIGVKTPMEMWKGK-PADYSSLHVFGC 265

Query: 671 PASV 682
           P  V
Sbjct: 266 PVYV 269



 Score = 40.8 bits (94), Expect(3) = 6e-16
 Identities = 17/38 (44%), Positives = 26/38 (68%)
 Frame = +3

Query: 186 SKPVSLEGKCYFVSFIDEYSRYMWVATMKHRNEAMKLF 299
           S  +S+ G  YFVSFID+YSR +WV  +K +++   +F
Sbjct: 104 SPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVF 141



 Score = 30.0 bits (66), Expect(3) = 6e-16
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 697 KDCVFVGIK-LVLGYKLWYPKSRCIILSGNSVFDETSVLKLSSSMHVESSQAKTILQQVE 873
           + C+F+G    V GY+LW P +  II+S + VF E    KL S     S+       Q+E
Sbjct: 284 RKCIFLGYADNVKGYRLWDPTAHKIIVSRDVVFAE----KLQSEQKNVSTPIDITSVQIE 339


>gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group]
 gb|ABA92543.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
           [Oryza sativa Japonica Group]
          Length = 1170

 Score = 53.9 bits (128), Expect(3) = 2e-14
 Identities = 36/129 (27%), Positives = 60/129 (46%)
 Frame = +2

Query: 290 ETFSSSGTGKNVPNCRLEGGSGRYTEVSKRVIRSTGCLKQAYDDTILPKEQRICN*MRWS 469
           +T     T + V   R + G    +++ K   +  G ++  Y     P++  +       
Sbjct: 579 KTMVKKQTERKVKILRTDNGMELCSKIFKSYCKCEGIVRH-YTVPHTPQQNGVAE----R 633

Query: 470 MKRALVKKMHYLMSSNKANAIIWTKALKCACYIINRLSSAAIEGKIPLKVWSRKIVSDYD 649
           MKR ++ K   ++         W +A+  ACY+INR  S AI+ K P++VWS    ++Y 
Sbjct: 634 MKRTIISKSRCMLPYVGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGS-PANYS 692

Query: 650 SL*VFGCPA 676
            L VFGC A
Sbjct: 693 DLRVFGCIA 701



 Score = 38.9 bits (89), Expect(3) = 2e-14
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +1

Query: 703 CVFVGIKL-VLGYKLWYPKSRCIILSGNSVFDETSVLKLSSSMHVESSQAKTILQQVE 873
           C+F+G    V GYKLW P+++ +++S N VF E+ +L  + S +V     +    QVE
Sbjct: 717 CIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLYDNPSTNVPVESQEKASVQVE 774



 Score = 36.6 bits (83), Expect(3) = 2e-14
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +3

Query: 162 VHICIQRPSKPVSLEGKCYFVSFIDEYSRYMWVATMKHRNEAMKLF 299
           VH  +  P++  S  G  Y ++ +D+YSR +W   +KH+ +A  +F
Sbjct: 530 VHSNLWGPARKTSFGGARYMMTTVDDYSRKVWSYFLKHKYQAFDVF 575


>gb|KYP62383.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 595

 Score = 50.4 bits (119), Expect(3) = 3e-14
 Identities = 35/122 (28%), Positives = 59/122 (48%)
 Frame = +2

Query: 311 TGKNVPNCRLEGGSGRYTEVSKRVIRSTGCLKQAYDDTILPKEQRICN*MRWSMKRALVK 490
           TGK +   R   G    +       +  G ++Q    T+    Q+  N +   M + L++
Sbjct: 165 TGKKIKRFRTNNGLEFCSAEFNTFCKDKGIVRQL---TVRNTPQQ--NGVAERMNKTLLE 219

Query: 491 KMHYLMSSNKANAIIWTKALKCACYIINRLSSAAIEGKIPLKVWSRKIVSDYDSL*VFGC 670
           +   L+S N      W +A+   C++INR  S AI  K P+++W+ K  ++Y +L VFGC
Sbjct: 220 RTRCLLS-NAEGVTFWGEAVNTTCFLINRTPSTAISLKTPIEIWTGK-PTNYSNLRVFGC 277

Query: 671 PA 676
            A
Sbjct: 278 NA 279



 Score = 45.4 bits (106), Expect(3) = 3e-14
 Identities = 19/46 (41%), Positives = 29/46 (63%)
 Frame = +3

Query: 162 VHICIQRPSKPVSLEGKCYFVSFIDEYSRYMWVATMKHRNEAMKLF 299
           +H     PS+ +SL G  YF+S ID+YSR  W+  + H+N+A + F
Sbjct: 109 IHADCWGPSRVLSLGGGRYFLSIIDDYSRMTWIYIISHKNQAFRYF 154



 Score = 32.7 bits (73), Expect(3) = 3e-14
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +1

Query: 697 KDCVFVGI-KLVLGYKLWYPKSRCIILSGNSVFDET 801
           + C+F+G    V GY++W P  + +ILS + +FDE+
Sbjct: 293 RKCLFMGYGDGVKGYRIWSPSEKKVILSRDVIFDES 328


>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
 gb|AAT44170.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1175

 Score = 59.3 bits (142), Expect(3) = 6e-14
 Identities = 36/122 (29%), Positives = 59/122 (48%)
 Frame = +2

Query: 311 TGKNVPNCRLEGGSGRYTEVSKRVIRSTGCLKQAYDDTILPKEQRICN*MRWSMKRALVK 490
           T K V   R + G G  ++      R  G +   +     P++  +       M R ++ 
Sbjct: 439 TEKEVKVLRTDNGGGFCSDAFDDYCRKEGIVMH-HTIPYTPQQNGVAE----RMNRTIIS 493

Query: 491 KMHYLMSSNKANAIIWTKALKCACYIINRLSSAAIEGKIPLKVWSRKIVSDYDSL*VFGC 670
           K   ++S+ + N   W +A K ACY+INR  S ++  K P++VWS  + ++Y  L VFGC
Sbjct: 494 KARCMLSNARMNKRFWAEAAKTACYLINRSPSISLNKKTPIEVWS-GMPANYSQLRVFGC 552

Query: 671 PA 676
            A
Sbjct: 553 TA 554



 Score = 38.9 bits (89), Expect(3) = 6e-14
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +3

Query: 162 VHICIQRPSKPVSLEGKCYFVSFIDEYSRYMWVATMKHRNEAMKLF 299
           VH  +  PS+  SL G  Y ++ ID+YSR +W   +KH+++    F
Sbjct: 383 VHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAF 428



 Score = 29.3 bits (64), Expect(3) = 6e-14
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 703 CVFVGIKL-VLGYKLWYPKSRCIILSGNSVFDET 801
           C+F+G    V GYKLW P++    +S + VF+E+
Sbjct: 570 CLFLGYGSGVKGYKLWNPETNKTFMSRSVVFNES 603


>gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1131

 Score = 56.2 bits (134), Expect(3) = 1e-13
 Identities = 26/69 (37%), Positives = 40/69 (57%)
 Frame = +2

Query: 470 MKRALVKKMHYLMSSNKANAIIWTKALKCACYIINRLSSAAIEGKIPLKVWSRKIVSDYD 649
           M R ++ K   ++S+ + N   W +A   ACY+IN+  S  +  K P++VWS  + +DY 
Sbjct: 520 MNRTIISKARCMLSNARMNKRFWAEAANTACYLINKSPSIPLNKKTPIEVWS-GMPADYS 578

Query: 650 SL*VFGCPA 676
            L VFGC A
Sbjct: 579 QLRVFGCTA 587



 Score = 40.8 bits (94), Expect(3) = 1e-13
 Identities = 29/99 (29%), Positives = 43/99 (43%)
 Frame = +3

Query: 162 VHICIQRPSKPVSLEGKCYFVSFIDEYSRYMWVATMKHRNEAMKLFHRVEQEKMCRIADW 341
           VH  +  PS+  SL G  Y ++ ID+YS  +W   +KH+++    F   E + M      
Sbjct: 438 VHADLWGPSRKPSLGGARYMLTIIDDYSTKVWPYFLKHKDDTFATFK--EWKVMIERQTE 495

Query: 342 KEDQGDTRR*AKG*SVPRVV*NRHTTILFFPRNKGYATR 458
           KE +G                 RH TI + P+  G A R
Sbjct: 496 KEKEGIV---------------RHHTIPYTPQQNGVAER 519



 Score = 29.3 bits (64), Expect(3) = 1e-13
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 703 CVFVGIKL-VLGYKLWYPKSRCIILSGNSVFDET 801
           C+F+G    V GYKLW P++    +S + VF+E+
Sbjct: 603 CLFLGYGSGVKGYKLWNPETNKTFMSRSVVFNES 636


>gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa Japonica Group]
 gb|AAL75759.1| Putative pol polyprotein [Oryza sativa Japonica Group]
 gb|AAP51772.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1005

 Score = 61.6 bits (148), Expect(3) = 1e-13
 Identities = 37/122 (30%), Positives = 58/122 (47%)
 Frame = +2

Query: 311 TGKNVPNCRLEGGSGRYTEVSKRVIRSTGCLKQAYDDTILPKEQRICN*MRWSMKRALVK 490
           T K V   R + G    ++      R  G ++  Y     P++  +       M R ++ 
Sbjct: 281 TEKEVKVLRTDNGGEFCSDAFDDYYRKEGIVRH-YTIPYTPQQNGVAE----RMNRTIIS 335

Query: 491 KMHYLMSSNKANAIIWTKALKCACYIINRLSSAAIEGKIPLKVWSRKIVSDYDSL*VFGC 670
           K H ++S+ + N   W +A   ACY+INR  S  +  K P++VWS  + +DY  L VFGC
Sbjct: 336 KAHCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEVWS-GMSADYSQLRVFGC 394

Query: 671 PA 676
            A
Sbjct: 395 TA 396



 Score = 35.8 bits (81), Expect(3) = 1e-13
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 162 VHICIQRPSKPVSLEGKCYFVSFIDEYSRYMWVATMKHRNEAMKLF 299
           VH  +  PS   SL G  Y ++ ID++SR +W   +KH+++    F
Sbjct: 225 VHADLWGPSHKPSLGGARYMLTIIDDHSRKVWPYFLKHKDDTFAAF 270



 Score = 28.9 bits (63), Expect(3) = 1e-13
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 703 CVFVGIKL-VLGYKLWYPKSRCIILSGNSVFDET 801
           C+F+G    V GYKLW P++    +S + +F+E+
Sbjct: 412 CLFLGYGSGVKGYKLWNPETNKTFMSRSVIFNES 445


>gb|KYP40337.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1269

 Score = 49.7 bits (117), Expect(3) = 2e-12
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
 Frame = +3

Query: 162 VHICIQRPSKPVSLEGKCYFVSFIDEYSRYMWVATMKHRNEAMKLFH----RVEQEKMCR 329
           VH  +  P+   S+ GK YFV+FID++SR +WV  +KH++E  + F      VE E   +
Sbjct: 451 VHSDVWGPTTVSSISGKQYFVTFIDDHSRKVWVYFLKHKSEVFEAFKMWKAMVENETGLK 510

Query: 330 IADWKEDQG----DTR 365
           I   + D G    DTR
Sbjct: 511 IKKLRTDNGGEYEDTR 526



 Score = 45.1 bits (105), Expect(3) = 2e-12
 Identities = 27/71 (38%), Positives = 36/71 (50%)
 Frame = +2

Query: 470 MKRALVKKMHYLMSSNKANAIIWTKALKCACYIINRLSSAAIEGKIPLKVWSRKIVSDYD 649
           M R L ++   +   +      W +A+  A Y+INR  S  +E KIP +VWS K V    
Sbjct: 555 MNRTLTERARSMRMQSGLPKQFWAEAVNTAAYLINRGPSVPLEHKIPEEVWSGKEVK-LS 613

Query: 650 SL*VFGCPASV 682
            L VFGC A V
Sbjct: 614 HLRVFGCVAYV 624



 Score = 27.7 bits (60), Expect(3) = 2e-12
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +1

Query: 697 KDCVFVGI-KLVLGYKLWYPKSRCIILSGNSVFDETSVLKLSSSMHVESSQAKTI-LQQV 870
           K C F+G  +   GY+LW  +++ +I S + +F+E  + K     +  +S +K I    V
Sbjct: 639 KKCTFIGYGEDEFGYRLWDDENKKMIRSRDVIFNEGVMYK--DKQNTSASNSKPIEPTYV 696

Query: 871 EID 879
           E+D
Sbjct: 697 EVD 699


>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
          Length = 1415

 Score = 52.4 bits (124), Expect(2) = 2e-12
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
 Frame = +3

Query: 90  ITYYTHPNGLKRKP-DLFINKSNTNVHICIQRPSKPVSLEGKCYFVSFIDEYSRYMWVAT 266
           +++ +HP   K +P DL        +H  +  P K  SL G  YFV+FID+YSR +WV T
Sbjct: 463 VSFMSHPPTRKSEPLDL--------IHSDVCGPMKVRSLGGASYFVTFIDDYSRKLWVYT 514

Query: 267 MKHRNEAMKLF 299
           +KH+++ + +F
Sbjct: 515 LKHKSDVLGVF 525



 Score = 50.1 bits (118), Expect(2) = 2e-12
 Identities = 38/124 (30%), Positives = 59/124 (47%)
 Frame = +2

Query: 311 TGKNVPNCRLEGGSGRYTEVSKRVIRSTGCLKQAYDDTILPKEQRICN*MRWSMKRALVK 490
           TGK +   R + G G Y        R  G   Q       PK  ++ N +   M R +++
Sbjct: 536 TGKKLKCIRTDNG-GEYCGPFDEYCRRYGIRHQKTP----PKIPQL-NGLAERMNRTIME 589

Query: 491 KMHYLMSSNKANAIIWTKALKCACYIINRLSSAAIEGKIPLKVWSRKIVSDYDSL*VFGC 670
           ++  ++   K  +  W +A+  A ++IN     A++ ++P KVW  K VS YD L VFGC
Sbjct: 590 RVRCMLDDAKLPSSFWAEAVSTAVHVINLSPVIALKNEVPDKVWCGKDVS-YDHLRVFGC 648

Query: 671 PASV 682
            A V
Sbjct: 649 KAFV 652


>gb|PON66676.1| Ribonuclease H-like domain containing protein [Parasponia
           andersonii]
          Length = 142

 Score = 67.8 bits (164), Expect(2) = 6e-12
 Identities = 32/66 (48%), Positives = 45/66 (68%)
 Frame = +2

Query: 470 MKRALVKKMHYLMSSNKANAIIWTKALKCACYIINRLSSAAIEGKIPLKVWSRKIVSDYD 649
           M + L++K+  ++S+ +   + W  A+  AC++INRL S AIE K PL+VWS K  SDYD
Sbjct: 1   MNQTLLEKVRCVLSNARLGKVFWAGAITYACHLINRLPSTAIECKTPLEVWSGKPASDYD 60

Query: 650 SL*VFG 667
           SL VFG
Sbjct: 61  SLHVFG 66



 Score = 33.5 bits (75), Expect(2) = 6e-12
 Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +1

Query: 697 KDCVFVGIKL-VLGYKLWYPKSRCIILSGNSVFDETSVLKLSSSMHVESSQAKTIL--QQ 867
           K  +F+ I   V GY+LW   S+ I+ S +  FDE ++LK      V   Q KTI   QQ
Sbjct: 83  KKALFMSISSGVKGYRLWCLSSKKILFSRDVTFDEFAILK-----KVTEDQEKTISIPQQ 137

Query: 868 VE 873
           VE
Sbjct: 138 VE 139


>gb|KYP40338.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 864

 Score = 49.7 bits (117), Expect(3) = 6e-12
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
 Frame = +3

Query: 162 VHICIQRPSKPVSLEGKCYFVSFIDEYSRYMWVATMKHRNEAMKLFH----RVEQEKMCR 329
           VH  +  P+   S+ GK YFV+FID++SR +WV  +KH++E  + F      VE E   +
Sbjct: 451 VHSDVWGPTTVSSISGKQYFVTFIDDHSRKVWVYFLKHKSEVFEAFKMWKAMVENETGLK 510

Query: 330 IADWKEDQG----DTR 365
           I   + D G    DTR
Sbjct: 511 IKKLRTDNGGEYEDTR 526



 Score = 43.1 bits (100), Expect(3) = 6e-12
 Identities = 26/71 (36%), Positives = 35/71 (49%)
 Frame = +2

Query: 470 MKRALVKKMHYLMSSNKANAIIWTKALKCACYIINRLSSAAIEGKIPLKVWSRKIVSDYD 649
           M R L ++   +   +      W + +  A Y+INR  S  +E KIP +VWS K V    
Sbjct: 555 MNRTLTERARSMRVQSGLPKQFWAETVNTAAYLINRGPSVPLEHKIPEEVWSGKEVK-LS 613

Query: 650 SL*VFGCPASV 682
            L VFGC A V
Sbjct: 614 HLRVFGCVAYV 624



 Score = 27.7 bits (60), Expect(3) = 6e-12
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +1

Query: 697 KDCVFVGI-KLVLGYKLWYPKSRCIILSGNSVFDETSVLKLSSSMHVESSQAKTI-LQQV 870
           K C F+G  +   GY+LW  +++ +I S + +F+E  + K     +  +S +K I    V
Sbjct: 639 KKCTFIGYGEDEFGYRLWDDENKKMIRSRDVIFNEGVMYK--DKQNTSASNSKPIEPTYV 696

Query: 871 EID 879
           E+D
Sbjct: 697 EVD 699


>gb|PKA55182.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 286

 Score = 44.7 bits (104), Expect(3) = 9e-12
 Identities = 34/124 (27%), Positives = 54/124 (43%)
 Frame = +2

Query: 311 TGKNVPNCRLEGGSGRYTEVSKRVIRSTGCLKQAYDDTILPKEQRICN*MRWSMKRALVK 490
           TGK +   R + G G YT    +      CLK+              N +   M R L++
Sbjct: 109 TGKYIKVLRTDNG-GEYTSKEFQDF----CLKEGITRHFTIPNTPQQNGVAERMNRTLLE 163

Query: 491 KMHYLMSSNKANAIIWTKALKCACYIINRLSSAAIEGKIPLKVWSRKIVSDYDSL*VFGC 670
           +   +      +   W +++    Y++NR  S A+E K P +VW  K V DY +L +F C
Sbjct: 164 RERCMRLFAGLSKSFWAESVNTTYYLVNRSPSLALELKSPEEVWLGKPV-DYSNLHIFSC 222

Query: 671 PASV 682
           P  +
Sbjct: 223 PVYI 226



 Score = 44.3 bits (103), Expect(3) = 9e-12
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
 Frame = +3

Query: 144 NKSNTN----VHICIQRPSKPVSLEGKCYFVSFIDEYSRYMWVATMKHRNEAMKLF 299
           NK + N    VH  +  PS   SL G  YFV+FID+Y R +WV  ++H++E  + F
Sbjct: 43  NKRSKNISEYVHSDVWGPSPVTSLGGAKYFVTFIDDYLRKVWVYFLQHKSEVFEKF 98



 Score = 31.2 bits (69), Expect(3) = 9e-12
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 697 KDCVFVGIKL-VLGYKLWYPKSRCIILSGNSVFDETSVLKLS 819
           K C+F+G    V  YK+W P +R   L  +  FDETS+ K S
Sbjct: 241 KRCIFMGYASDVKWYKVWDPNTRKSELCKDIRFDETSMFKKS 282


>gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 448

 Score = 53.9 bits (128), Expect(2) = 9e-12
 Identities = 26/69 (37%), Positives = 41/69 (59%)
 Frame = +2

Query: 470 MKRALVKKMHYLMSSNKANAIIWTKALKCACYIINRLSSAAIEGKIPLKVWSRKIVSDYD 649
           M + L+++   L+S+   +   W +A+   CY+INR  S  I+ K P++VWS K  ++Y 
Sbjct: 351 MNKTLLERARCLLSNAGLSRSFWAEAISTTCYLINRSPSTVIDCKTPIEVWSNK-PANYS 409

Query: 650 SL*VFGCPA 676
            L VFGC A
Sbjct: 410 LLRVFGCNA 418



 Score = 46.6 bits (109), Expect(2) = 9e-12
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
 Frame = +3

Query: 162 VHICIQRPSKPVSLEGKCYFVSFIDEYSRYMWVATMKHRNEAMKLFHR----VEQEKMCR 329
           +H     PS+  SL G  YF+S ID+YSR  W+   KH+N+A K F      +E++   R
Sbjct: 247 IHSDCWGPSQVPSLGGGRYFLSIIDDYSRMTWIFITKHKNQAFKCFKEWKILMEKQISKR 306

Query: 330 IADWKEDQG 356
           +   + D G
Sbjct: 307 VKRLRTDNG 315


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score = 58.5 bits (140), Expect(2) = 1e-11
 Identities = 37/129 (28%), Positives = 62/129 (48%)
 Frame = +2

Query: 290 ETFSSSGTGKNVPNCRLEGGSGRYTEVSKRVIRSTGCLKQAYDDTILPKEQRICN*MRWS 469
           +T     T + V   R + G    +++ K   +S G ++  Y     P++  +       
Sbjct: 453 KTMVERQTERKVKILRTDNGMELCSKIFKSYCKSEGIVRH-YTVPHTPQQNGVAE----R 507

Query: 470 MKRALVKKMHYLMSSNKANAIIWTKALKCACYIINRLSSAAIEGKIPLKVWSRKIVSDYD 649
           M R ++ K   ++S+       W +A+  ACY+INR  S AI+ K P++VWS    ++Y 
Sbjct: 508 MNRTIISKARCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGS-PANYS 566

Query: 650 SL*VFGCPA 676
            L VFGC A
Sbjct: 567 DLRVFGCTA 575



 Score = 41.2 bits (95), Expect(2) = 1e-11
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
 Frame = +1

Query: 703 CVFVG-IKLVLGYKLWYPKSRCIILSGNSVFDETSVLKLSSSMHVESSQAKTILQQVE 873
           C+F+G +  V GYKLW P+++ +++S N VF E+ +L    S +V     + +  QVE
Sbjct: 591 CIFLGYLSGVKGYKLWCPETKKVVISRNVVFHESIMLHDKPSTNVPVESQEKVSVQVE 648


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
 gb|ABF96427.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1326

 Score = 57.4 bits (137), Expect(3) = 2e-11
 Identities = 27/69 (39%), Positives = 40/69 (57%)
 Frame = +2

Query: 470 MKRALVKKMHYLMSSNKANAIIWTKALKCACYIINRLSSAAIEGKIPLKVWSRKIVSDYD 649
           M R ++ K   ++S+ + N   W +A   ACY+INR  S  +  K P++VWS  + +DY 
Sbjct: 592 MNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEVWS-GMPADYS 650

Query: 650 SL*VFGCPA 676
            L VFGC A
Sbjct: 651 QLRVFGCTA 659



 Score = 38.9 bits (89), Expect(3) = 2e-11
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
 Frame = +3

Query: 162 VHICIQRPSKPVSLEGKCYFVSFIDEYSRYMWVATMKHRNEAMKLFH----RVEQEKMCR 329
           VH  +  PS+   L G  Y ++ ID+YSR +W   +KH+++    F     R+E++    
Sbjct: 488 VHTDLWGPSRKAYLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVRIERQTEKE 547

Query: 330 IADWKEDQG 356
           +   + D G
Sbjct: 548 VKVLRTDNG 556



 Score = 22.7 bits (47), Expect(3) = 2e-11
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 703 CVFVGIKL-VLGYKLWYPKSRCIILSGNSVFDET 801
           C+F+G    V  YKLW P++    +  + VF+++
Sbjct: 675 CLFLGYGSGVKRYKLWNPETNKTFMRRSVVFNKS 708


>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
 gb|AAM10749.1|AC112514_2 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1225

 Score = 58.5 bits (140), Expect(2) = 2e-11
 Identities = 38/129 (29%), Positives = 62/129 (48%)
 Frame = +2

Query: 290 ETFSSSGTGKNVPNCRLEGGSGRYTEVSKRVIRSTGCLKQAYDDTILPKEQRICN*MRWS 469
           +T     T + V   R + G    +++ K   +S G ++  Y     P++  +       
Sbjct: 505 KTMVERQTERKVKILRTDNGMDFCSKIFKSYCKSEGIVRH-YTVPHTPQQNGVAE----R 559

Query: 470 MKRALVKKMHYLMSSNKANAIIWTKALKCACYIINRLSSAAIEGKIPLKVWSRKIVSDYD 649
           M R ++ K   ++S+       W +A+  ACY+INR  S AI+ K P+KVWS    ++Y 
Sbjct: 560 MNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIKVWSGS-PANYS 618

Query: 650 SL*VFGCPA 676
            L VFGC A
Sbjct: 619 DLRVFGCIA 627



 Score = 40.8 bits (94), Expect(2) = 2e-11
 Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
 Frame = +1

Query: 703 CVFVGIKL-VLGYKLWYPKSRCIILSGNSVFDETSVL--KLSSSMHVESSQAKTILQQVE 873
           C+F+G    V GYKLW P+++ +++S N VF E+ +L  K S+++ VES +  ++  QVE
Sbjct: 643 CIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASV--QVE 700


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2340

 Score = 58.2 bits (139), Expect(2) = 2e-11
 Identities = 38/129 (29%), Positives = 62/129 (48%)
 Frame = +2

Query: 290  ETFSSSGTGKNVPNCRLEGGSGRYTEVSKRVIRSTGCLKQAYDDTILPKEQRICN*MRWS 469
            +T     T + V   R + G    +++ K   +S G ++  Y     P++  +       
Sbjct: 751  KTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRH-YTVPHTPQQNGVAE----R 805

Query: 470  MKRALVKKMHYLMSSNKANAIIWTKALKCACYIINRLSSAAIEGKIPLKVWSRKIVSDYD 649
            M R ++ K   L+S+       W +A+  ACY+INR  S AI+ K P++VWS    ++Y 
Sbjct: 806  MNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGS-PANYS 864

Query: 650  SL*VFGCPA 676
             L VFGC A
Sbjct: 865  DLRVFGCTA 873



 Score = 40.8 bits (94), Expect(2) = 2e-11
 Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
 Frame = +1

Query: 703  CVFVGIKL-VLGYKLWYPKSRCIILSGNSVFDETSVL--KLSSSMHVESSQAKTILQQVE 873
            C+F+G    V GYKLW P+++ +++S N VF E+ +L  K S+++ VES +  ++  QVE
Sbjct: 889  CIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASV--QVE 946