BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon22_contig00024075
         (1023 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]          150   5e-86
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     142   1e-80
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   138   2e-77
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              139   2e-76
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              138   2e-76
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              139   1e-75
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              136   3e-75
gb|KYP68607.1| Retrovirus-related Pol polyprotein from transposo...   148   3e-74
gb|OMO83367.1| Integrase, catalytic core [Corchorus capsularis]       132   5e-74
gb|KYP42748.1| Retrovirus-related Pol polyprotein from transposo...   135   1e-73
gb|KYP67664.1| Retrovirus-related Pol polyprotein from transposo...   135   1e-73
gb|KYP38095.1| Retrovirus-related Pol polyprotein from transposo...   135   1e-73
gb|KYP53032.1| Retrovirus-related Pol polyprotein from transposo...   135   1e-73
gb|KYP36645.1| Retrovirus-related Pol polyprotein from transposo...   135   1e-73
gb|PKA55182.1| Retrovirus-related Pol polyprotein from transposo...   155   2e-73
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   137   4e-73
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar...   130   5e-73
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar...   130   5e-73
gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa...   139   6e-73
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   137   1e-72

>gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]
          Length = 876

 Score =  150 bits (378), Expect(3) = 5e-86
 Identities = 69/119 (57%), Positives = 90/119 (75%), Gaps = 1/119 (0%)
 Frame = +3

Query: 345 KGVLDLIHSDVWGPSPVASIGGARYFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVE 524
           +G+LD +HSDVWGP+  AS+GG+RYFVTF DDFSRK+WVYF+K KS+VF  FK+WK  VE
Sbjct: 397 EGILDYVHSDVWGPTREASMGGSRYFVTFTDDFSRKLWVYFMKQKSEVFSKFKLWKAEVE 456

Query: 525 NRKGIKVKVLRSDNGGEYTSEEFKKYLADEGIYHQLSIPERSEQNGVAERIKQD-TDRA 698
           N+ G K+K LRSDNG EYT+ +F+K+    GI    S+ +  +QNGVAER+    T+RA
Sbjct: 457 NQTGRKIKYLRSDNGTEYTNSQFEKFCEQHGIQRHFSVRKTPQQNGVAERMNMSLTERA 515



 Score =  139 bits (349), Expect(3) = 5e-86
 Identities = 61/115 (53%), Positives = 87/115 (75%)
 Frame = +1

Query: 679  NRTLTERARSLRLQADMSKGFWAMSVNHACHLVNRSPSTAIDLQIPEEIWRGEKINYSQL 858
            N +LTERAR L+L+A +SKGFWA ++N AC+L+NRSP  +++ ++ EE+W G+ I+   L
Sbjct: 508  NMSLTERARCLQLKAGLSKGFWAETINMACYLINRSPRASLEGKVAEEVWTGKPIDLDNL 567

Query: 859  RIFGCPAYALVDSHKRNKLEAKSKKCIFIGFSHGVKGYKLWNLETNDAFMSRDVV 1023
            RIFGCP +  + S  R+KL+ KSKKCIF+G+S GVKG+KLW+  +    +SRDVV
Sbjct: 568  RIFGCPTFVHISSEDRSKLDPKSKKCIFVGYSKGVKGFKLWDPVSKKMVLSRDVV 622



 Score = 80.5 bits (197), Expect(3) = 5e-86
 Identities = 33/73 (45%), Positives = 51/73 (69%)
 Frame = +2

Query: 104 NLYRLVGSVIVDDVTVATEKEDDTRLWHIRLGHMSEKGLQVLHRKGVLSGIKQCKLDFCK 283
           N+Y+L+G+ +V DV       D T+LWH+RLGH+SE+G+  LH++ +L G+  CK+D CK
Sbjct: 318 NIYKLLGNTVVGDVASVESDNDATKLWHLRLGHLSERGMMELHKRSLLKGVCSCKMDLCK 377

Query: 284 *CCVMGRQHKSLF 322
             CV+G+Q +  F
Sbjct: 378 -YCVLGKQCRVRF 389


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  142 bits (359), Expect(3) = 1e-80
 Identities = 66/113 (58%), Positives = 84/113 (74%)
 Frame = +3

Query: 345 KGVLDLIHSDVWGPSPVASIGGARYFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVE 524
           KGVLD IH+DVWGPS   S GGARYFV+FIDDFSRKVW++F+K K++VF  FK WK  V 
Sbjct: 450 KGVLDYIHTDVWGPSATISKGGARYFVSFIDDFSRKVWIFFMKTKNEVFTKFKEWKAEVG 509

Query: 525 NRKGIKVKVLRSDNGGEYTSEEFKKYLADEGIYHQLSIPERSEQNGVAERIKQ 683
           N+ G K+K LRSDNGGEY  ++F +   DEGI    ++ +  +QNGVAER+ +
Sbjct: 510 NQTGRKIKCLRSDNGGEYRDKKFLQLCKDEGITRHFTVKKSPQQNGVAERMNR 562



 Score =  139 bits (351), Expect(3) = 1e-80
 Identities = 62/115 (53%), Positives = 83/115 (72%)
 Frame = +1

Query: 679  NRTLTERARSLRLQADMSKGFWAMSVNHACHLVNRSPSTAIDLQIPEEIWRGEKINYSQL 858
            NRTL E+ RS+R  A + + FWA + NHAC+L+NRSPS AI+ +  EE+W G+ ++YS L
Sbjct: 561  NRTLMEKERSMRFHAGLPEEFWAEAANHACYLINRSPSRAINFKCAEEVWSGKPVDYSNL 620

Query: 859  RIFGCPAYALVDSHKRNKLEAKSKKCIFIGFSHGVKGYKLWNLETNDAFMSRDVV 1023
            R+FGC AYA +   +R KLE KS +C+FIGF  GVKGYKLW++      +SRDVV
Sbjct: 621  RVFGCSAYAHIPKDERTKLEPKSLECLFIGFEKGVKGYKLWDIVNEKKVISRDVV 675



 Score = 68.9 bits (167), Expect(3) = 1e-80
 Identities = 34/73 (46%), Positives = 46/73 (63%)
 Frame = +2

Query: 104 NLYRLVGSVIVDDVTVATEKEDDTRLWHIRLGHMSEKGLQVLHRKGVLSGIKQCKLDFCK 283
           N+Y+L GS +     V TE ED T LW  RLGHMS++GLQ LH+K  L G+    L+FC+
Sbjct: 370 NMYKLTGSTVEGGAGVCTE-EDKTELWRRRLGHMSQRGLQELHKKEQLDGVMSAALEFCR 428

Query: 284 *CCVMGRQHKSLF 322
             C +G+Q +  F
Sbjct: 429 -YCTLGKQTRVSF 440


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  138 bits (347), Expect(3) = 2e-77
 Identities = 65/112 (58%), Positives = 81/112 (72%)
 Frame = +3

Query: 348  GVLDLIHSDVWGPSPVASIGGARYFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVEN 527
            GVL+ IHSD+WGPSPV S  G RY+VTFIDDFSRKVWVYFLK K +VF  FK WK +VE 
Sbjct: 802  GVLEYIHSDLWGPSPVESHSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEK 861

Query: 528  RKGIKVKVLRSDNGGEYTSEEFKKYLADEGIYHQLSIPERSEQNGVAERIKQ 683
            R G  VK LR+DNG E+ +++F ++   EGI    ++    +QNGVAER+ Q
Sbjct: 862  RTGKVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQ 913



 Score =  130 bits (327), Expect(3) = 2e-77
 Identities = 65/116 (56%), Positives = 84/116 (72%), Gaps = 2/116 (1%)
 Frame = +1

Query: 679  NRTLTERARSLRLQADMSKGFWAMSVNHACHLVNRSPSTAIDLQIPEEIWRGEKINYSQL 858
            N+TL +RAR +R+ A +SK FWA +VN A +LVNRSPSTAID + P+E+W G+  NYS L
Sbjct: 912  NQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGL 971

Query: 859  RIFGCPAYALVDSHKRNKLEAKSKKCIFIGFSHGVKGYKLWNLE--TNDAFMSRDV 1020
            +IFGCPAYA V      KLE ++ KCIF+G++ GVKGY+LW  E  T    +SRDV
Sbjct: 972  KIFGCPAYAHVSD---GKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDV 1024



 Score = 72.0 bits (175), Expect(3) = 2e-77
 Identities = 36/72 (50%), Positives = 51/72 (70%)
 Frame = +2

Query: 107 LYRLVGSVIVDDVTVATEKEDDTRLWHIRLGHMSEKGLQVLHRKGVLSGIKQCKLDFCK* 286
           +Y L+GS ++   T A E+++ T LWH RLGHMSEKGL +L ++G+LSG +  KL FC+ 
Sbjct: 725 IYTLMGSSVLG--TAAVEEDNCTELWHRRLGHMSEKGLSILSKQGLLSGAETGKLKFCE- 781

Query: 287 CCVMGRQHKSLF 322
            CVMG+Q +  F
Sbjct: 782 TCVMGKQRRVKF 793


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  139 bits (349), Expect(3) = 2e-76
 Identities = 60/115 (52%), Positives = 85/115 (73%)
 Frame = +1

Query: 679  NRTLTERARSLRLQADMSKGFWAMSVNHACHLVNRSPSTAIDLQIPEEIWRGEKINYSQL 858
            NRTL ER R++   A M+K FWA +V  AC+++NRSPSTAIDL+ P E+W+G+ ++YS L
Sbjct: 589  NRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSL 648

Query: 859  RIFGCPAYALVDSHKRNKLEAKSKKCIFIGFSHGVKGYKLWNLETNDAFMSRDVV 1023
             +FGCP Y + +S +R KL+ KS+KCIF+G++  VKGY+LW+       +SRDVV
Sbjct: 649  HVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVV 703



 Score =  130 bits (327), Expect(3) = 2e-76
 Identities = 63/113 (55%), Positives = 80/113 (70%)
 Frame = +3

Query: 345 KGVLDLIHSDVWGPSPVASIGGARYFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVE 524
           K +LDLIHSDVW  SP  S+GGARYFV+FIDD+SR++WVY +K KSDVF  FK +K  +E
Sbjct: 479 KHILDLIHSDVW-ESPELSLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIE 537

Query: 525 NRKGIKVKVLRSDNGGEYTSEEFKKYLADEGIYHQLSIPERSEQNGVAERIKQ 683
              G K+K LR+DNGGEY   EF  +   EGI  Q ++    +QNGVAER+ +
Sbjct: 538 LETGKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNR 590



 Score = 68.2 bits (165), Expect(3) = 2e-76
 Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
 Frame = +2

Query: 98  TKNLYRLVGSVI--VDDVTVATEKEDDTRLWHIRLGHMSEKGLQVLHRKGVLSGIKQCKL 271
           T NLY L+G  +   D    A  +E+ T +WH RLGHMSE+GL+VL  + +L G+K   L
Sbjct: 396 TSNLYMLLGDTLQEADASVAAASQEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNL 455

Query: 272 DFCK*CCVMGRQHKSLF 322
            FC+  CV+ +QH+  F
Sbjct: 456 PFCE-HCVISKQHRLKF 471


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  138 bits (348), Expect(3) = 2e-76
 Identities = 59/115 (51%), Positives = 85/115 (73%)
 Frame = +1

Query: 679  NRTLTERARSLRLQADMSKGFWAMSVNHACHLVNRSPSTAIDLQIPEEIWRGEKINYSQL 858
            NRTL ER R++   A+M+K FWA +V  AC+++NRSPST IDL+ P E+W+G+ ++YS L
Sbjct: 589  NRTLLERTRAMLKTAEMAKSFWAEAVKTACYVINRSPSTTIDLKTPMEMWKGKPVDYSSL 648

Query: 859  RIFGCPAYALVDSHKRNKLEAKSKKCIFIGFSHGVKGYKLWNLETNDAFMSRDVV 1023
             +FGCP Y + +S +R KL+ KS+KCIF+G++  VKGY+LW+       +SRDVV
Sbjct: 649  HVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVV 703



 Score =  130 bits (327), Expect(3) = 2e-76
 Identities = 63/113 (55%), Positives = 80/113 (70%)
 Frame = +3

Query: 345 KGVLDLIHSDVWGPSPVASIGGARYFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVE 524
           K +LDLIHSDVW  SP  S+GGARYFV+FIDD+SR++WVY +K KSDVF  FK +K  +E
Sbjct: 479 KHILDLIHSDVW-ESPKLSLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIE 537

Query: 525 NRKGIKVKVLRSDNGGEYTSEEFKKYLADEGIYHQLSIPERSEQNGVAERIKQ 683
              G K+K LR+DNGGEY   EF  +   EGI  Q ++    +QNGVAER+ +
Sbjct: 538 LETGKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNR 590



 Score = 68.2 bits (165), Expect(3) = 2e-76
 Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
 Frame = +2

Query: 98  TKNLYRLVGSVI--VDDVTVATEKEDDTRLWHIRLGHMSEKGLQVLHRKGVLSGIKQCKL 271
           T NLY L+G  +   D    A  +E+ T +WH RLGHMSE+GL+VL  + +L G+K   L
Sbjct: 396 TSNLYMLLGDTLQEADASVAAASQEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNL 455

Query: 272 DFCK*CCVMGRQHKSLF 322
            FC+  CV+ +QH+  F
Sbjct: 456 PFCE-HCVISKQHRLKF 471


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  139 bits (349), Expect(3) = 1e-75
 Identities = 60/115 (52%), Positives = 85/115 (73%)
 Frame = +1

Query: 679  NRTLTERARSLRLQADMSKGFWAMSVNHACHLVNRSPSTAIDLQIPEEIWRGEKINYSQL 858
            NRTL ER R++   A M+K FWA +V  AC+++NRSPSTAIDL+ P E+W+G+ ++YS L
Sbjct: 589  NRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSL 648

Query: 859  RIFGCPAYALVDSHKRNKLEAKSKKCIFIGFSHGVKGYKLWNLETNDAFMSRDVV 1023
             +FGCP Y + +S +R KL+ KS+KCIF+G++  VKGY+LW+       +SRDVV
Sbjct: 649  HVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVV 703



 Score =  127 bits (318), Expect(3) = 1e-75
 Identities = 62/113 (54%), Positives = 79/113 (69%)
 Frame = +3

Query: 345 KGVLDLIHSDVWGPSPVASIGGARYFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVE 524
           K +LDLIHSDVW  SP  S+GGARYFV+FIDD+SR++WVY +K KSDVF  FK +K  +E
Sbjct: 479 KHILDLIHSDVW-ESPEISLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIE 537

Query: 525 NRKGIKVKVLRSDNGGEYTSEEFKKYLADEGIYHQLSIPERSEQNGVAERIKQ 683
                K+K LR+DNGGEY   EF  +   EGI  Q ++    +QNGVAER+ +
Sbjct: 538 LETRKKIKCLRTDNGGEYIDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNR 590



 Score = 68.9 bits (167), Expect(3) = 1e-75
 Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
 Frame = +2

Query: 98  TKNLYRLVGSVI--VDDVTVATEKEDDTRLWHIRLGHMSEKGLQVLHRKGVLSGIKQCKL 271
           T NLY L+G  +   D    A+ +E+ T +WH RLGHMSE+GL+VL  + +L G+K   L
Sbjct: 396 TSNLYMLLGDTLQEADASVAASSQEETTMMWHQRLGHMSERGLKVLAERNLLHGLKAVNL 455

Query: 272 DFCK*CCVMGRQHKSLF 322
            FC+  CV+ +QH+  F
Sbjct: 456 PFCE-HCVISKQHRLKF 471


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  136 bits (342), Expect(3) = 3e-75
 Identities = 58/115 (50%), Positives = 84/115 (73%)
 Frame = +1

Query: 679  NRTLTERARSLRLQADMSKGFWAMSVNHACHLVNRSPSTAIDLQIPEEIWRGEKINYSQL 858
            NRTL ER R++   A M+K FWA +   AC+++NRSPSTAIDL+ P E+W+G+ ++YS L
Sbjct: 589  NRTLLERTRAMLKTAGMAKSFWAEAAKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSL 648

Query: 859  RIFGCPAYALVDSHKRNKLEAKSKKCIFIGFSHGVKGYKLWNLETNDAFMSRDVV 1023
             +FGCP Y + +S ++ KL+ KS+KCIF+G++  VKGY+LW+       +SRDVV
Sbjct: 649  HVFGCPVYVMYNSQEKTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVV 703



 Score =  127 bits (319), Expect(3) = 3e-75
 Identities = 62/113 (54%), Positives = 79/113 (69%)
 Frame = +3

Query: 345 KGVLDLIHSDVWGPSPVASIGGARYFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVE 524
           K +LDLIHSDVW  SP  S+GGARYFV+FIDD+SR++WVY +K KSDVF  FK +K  +E
Sbjct: 479 KHILDLIHSDVW-ESPEISLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIE 537

Query: 525 NRKGIKVKVLRSDNGGEYTSEEFKKYLADEGIYHQLSIPERSEQNGVAERIKQ 683
                K+K LR+DNGGEY   EF  +   EGI  Q ++    +QNGVAER+ +
Sbjct: 538 LETEKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNR 590



 Score = 69.7 bits (169), Expect(3) = 3e-75
 Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
 Frame = +2

Query: 98  TKNLYRLVGSVI--VDDVTVATEKEDDTRLWHIRLGHMSEKGLQVLHRKGVLSGIKQCKL 271
           T NLY L+G  +   D    A  +E+ T +WH RLGHMSE+GL+VL  + +L G+K   L
Sbjct: 396 TSNLYMLLGDTLQEADASVAAASQEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNL 455

Query: 272 DFCK*CCVMGRQHKSLF 322
            FC+  CVM +QH+  F
Sbjct: 456 PFCE-HCVMSKQHRLKF 471


>gb|KYP68607.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1291

 Score =  148 bits (374), Expect(3) = 3e-74
 Identities = 68/110 (61%), Positives = 87/110 (79%)
 Frame = +3

Query: 354 LDLIHSDVWGPSPVASIGGARYFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVENRK 533
           L+L+H+DVWGP+PV S+GG+ Y+VTFIDD +RKVWVYFLK+KSDVF  FK WK  VEN+ 
Sbjct: 453 LELVHTDVWGPAPVKSLGGSCYYVTFIDDATRKVWVYFLKNKSDVFSVFKRWKTEVENQT 512

Query: 534 GIKVKVLRSDNGGEYTSEEFKKYLADEGIYHQLSIPERSEQNGVAERIKQ 683
           G+K+K L+SDNGGEY S EFK + ++ GI    +IP   EQNGVAER+ +
Sbjct: 513 GLKLKSLKSDNGGEYNSHEFKNFCSEHGIRMIKTIPGTPEQNGVAERMNR 562



 Score =  127 bits (319), Expect(3) = 3e-74
 Identities = 54/114 (47%), Positives = 80/114 (70%)
 Frame = +1

Query: 679  NRTLTERARSLRLQADMSKGFWAMSVNHACHLVNRSPSTAIDLQIPEEIWRGEKINYSQL 858
            NRTL ERAR +R+Q+ + K FWA ++N A +L+NR PS  +  Q+PEE+W G+++N S L
Sbjct: 561  NRTLNERARCMRIQSGLPKVFWADAINTAAYLINRGPSVPLGYQLPEEVWSGKEVNLSHL 620

Query: 859  RIFGCPAYALVDSHKRNKLEAKSKKCIFIGFSHGVKGYKLWNLETNDAFMSRDV 1020
            R+FGC +Y L+DS  R+KL+ K+KKC FIG+   + GY+ W+ +      SR+V
Sbjct: 621  RVFGCVSYVLIDSDSRDKLDPKAKKCYFIGYGSDMYGYRFWDDQNKKIIRSRNV 674



 Score = 54.3 bits (129), Expect(3) = 3e-74
 Identities = 25/62 (40%), Positives = 41/62 (66%)
 Frame = +2

Query: 137 DDVTVATEKEDDTRLWHIRLGHMSEKGLQVLHRKGVLSGIKQCKLDFCK*CCVMGRQHKS 316
           +++   TE  +++ LWH RLGHMSEKG++++  KG LS +K   +  C+  C++G+Q K 
Sbjct: 381 ENMIAVTEAANNSFLWHQRLGHMSEKGMKLMATKGKLSKLKHVDVGTCE-HCILGKQRKI 439

Query: 317 LF 322
            F
Sbjct: 440 SF 441


>gb|OMO83367.1| Integrase, catalytic core [Corchorus capsularis]
          Length = 785

 Score =  132 bits (333), Expect(3) = 5e-74
 Identities = 63/114 (55%), Positives = 85/114 (74%)
 Frame = +1

Query: 679  NRTLTERARSLRLQADMSKGFWAMSVNHACHLVNRSPSTAIDLQIPEEIWRGEKINYSQL 858
            N+TL +RAR +RL A +SK FWA +VN   +LVNRSPSTAIDL+ P+++W  +  +YS L
Sbjct: 566  NQTLLQRARCIRLNAGLSKKFWAEAVNTTAYLVNRSPSTAIDLKTPQDLWYDKPSDYSGL 625

Query: 859  RIFGCPAYALVDSHKRNKLEAKSKKCIFIGFSHGVKGYKLWNLETNDAFMSRDV 1020
            RIFGCPAYA V+     KLE ++ KCIF+G+  GVKGY+LW+ ++N   +SRDV
Sbjct: 626  RIFGCPAYAHVND---GKLEPRAIKCIFLGYGTGVKGYRLWHFDSNKVIISRDV 676



 Score =  132 bits (331), Expect(3) = 5e-74
 Identities = 60/121 (49%), Positives = 82/121 (67%)
 Frame = +3

Query: 321 FLSRHISPKGVLDLIHSDVWGPSPVASIGGARYFVTFIDDFSRKVWVYFLKHKSDVFQTF 500
           F S   + KG+LD +HSD+WGP+PV S    RYFVTFIDD+S+KVWVYFLK K ++F  F
Sbjct: 447 FSSGKHTSKGILDYVHSDLWGPAPVESHSRCRYFVTFIDDYSKKVWVYFLKTKDELFDWF 506

Query: 501 KVWKKLVENRKGIKVKVLRSDNGGEYTSEEFKKYLADEGIYHQLSIPERSEQNGVAERIK 680
           K WK ++E     ++K LR+DNG E+  +EF ++   EGI    ++    +QNGVAER+ 
Sbjct: 507 KEWKIMIEKHTSRQIKTLRTDNGLEFCGQEFNEFCKKEGILRHHTVRRTPQQNGVAERMN 566

Query: 681 Q 683
           Q
Sbjct: 567 Q 567



 Score = 64.7 bits (156), Expect(3) = 5e-74
 Identities = 30/70 (42%), Positives = 48/70 (68%), Gaps = 3/70 (4%)
 Frame = +2

Query: 107 LYRLVGSVIVDDVTVAT---EKEDDTRLWHIRLGHMSEKGLQVLHRKGVLSGIKQCKLDF 277
           +Y L+G+ ++ +V V+    +  D T LWH+RLGHMSE+GL +L ++G+L G +  KL  
Sbjct: 374 IYTLIGNSVIGEVAVSESLGDSNDRTELWHLRLGHMSEQGLSILSKRGLLDGSECGKLKC 433

Query: 278 CK*CCVMGRQ 307
           C+  CV+G+Q
Sbjct: 434 CE-TCVLGKQ 442


>gb|KYP42748.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1305

 Score =  135 bits (340), Expect(3) = 1e-73
 Identities = 60/115 (52%), Positives = 82/115 (71%)
 Frame = +1

Query: 679  NRTLTERARSLRLQADMSKGFWAMSVNHACHLVNRSPSTAIDLQIPEEIWRGEKINYSQL 858
            NRTL ER R++   A ++K FWA +V  AC+L+NRSPSTAI L+ P E+W G+  NYS L
Sbjct: 588  NRTLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWNGKPSNYSSL 647

Query: 859  RIFGCPAYALVDSHKRNKLEAKSKKCIFIGFSHGVKGYKLWNLETNDAFMSRDVV 1023
             +FGCP Y + +S +R KL+ KS+KCIF+G++  VKGY+LW+       +SRDVV
Sbjct: 648  HVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVV 702



 Score =  124 bits (312), Expect(3) = 1e-73
 Identities = 61/113 (53%), Positives = 80/113 (70%)
 Frame = +3

Query: 345 KGVLDLIHSDVWGPSPVASIGGARYFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVE 524
           K +LDLIHSDVW  SP  S+GGA+YFV+FIDD+SR++WVY +K KSDVF  FK +K  VE
Sbjct: 478 KHILDLIHSDVW-ESPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVE 536

Query: 525 NRKGIKVKVLRSDNGGEYTSEEFKKYLADEGIYHQLSIPERSEQNGVAERIKQ 683
              G ++K LR+DNGGEY   +F  +   EGI  Q ++    +QNGVAER+ +
Sbjct: 537 LDTGKRIKCLRTDNGGEYIDGDFLAFCKQEGIKRQFTVAHTPQQNGVAERMNR 589



 Score = 68.2 bits (165), Expect(3) = 1e-73
 Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
 Frame = +2

Query: 98  TKNLYRLVGSVI--VDDVTVATEKEDDTRLWHIRLGHMSEKGLQVLHRKGVLSGIKQCKL 271
           T NLY L+G  +   D    A  +E+ T +WH RLGHMSE+GL++L  + +LSG+K   L
Sbjct: 395 TSNLYLLLGETLQEADASVAAISQEEATMMWHRRLGHMSERGLKILAERNLLSGLKMVTL 454

Query: 272 DFCK*CCVMGRQHKSLF 322
            FC+  CV  +QH+  F
Sbjct: 455 PFCE-HCVTSKQHRLQF 470


>gb|KYP67664.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1256

 Score =  135 bits (340), Expect(3) = 1e-73
 Identities = 60/115 (52%), Positives = 82/115 (71%)
 Frame = +1

Query: 679  NRTLTERARSLRLQADMSKGFWAMSVNHACHLVNRSPSTAIDLQIPEEIWRGEKINYSQL 858
            NRTL ER R++   A ++K FWA +V  AC+L+NRSPSTAI L+ P E+W G+  NYS L
Sbjct: 539  NRTLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWNGKPSNYSSL 598

Query: 859  RIFGCPAYALVDSHKRNKLEAKSKKCIFIGFSHGVKGYKLWNLETNDAFMSRDVV 1023
             +FGCP Y + +S +R KL+ KS+KCIF+G++  VKGY+LW+       +SRDVV
Sbjct: 599  HVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVV 653



 Score =  124 bits (312), Expect(3) = 1e-73
 Identities = 61/113 (53%), Positives = 80/113 (70%)
 Frame = +3

Query: 345 KGVLDLIHSDVWGPSPVASIGGARYFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVE 524
           K +LDLIHSDVW  SP  S+GGA+YFV+FIDD+SR++WVY +K KSDVF  FK +K  VE
Sbjct: 429 KHILDLIHSDVW-ESPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVE 487

Query: 525 NRKGIKVKVLRSDNGGEYTSEEFKKYLADEGIYHQLSIPERSEQNGVAERIKQ 683
              G ++K LR+DNGGEY   +F  +   EGI  Q ++    +QNGVAER+ +
Sbjct: 488 LDTGKRIKCLRTDNGGEYIDGDFLAFCKQEGIKRQFTVAHTPQQNGVAERMNR 540



 Score = 68.2 bits (165), Expect(3) = 1e-73
 Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
 Frame = +2

Query: 98  TKNLYRLVGSVI--VDDVTVATEKEDDTRLWHIRLGHMSEKGLQVLHRKGVLSGIKQCKL 271
           T NLY L+G  +   D    A  +E+ T +WH RLGHMSE+GL++L  + +LSG+K   L
Sbjct: 346 TSNLYLLLGETLQEADASVAAISQEEATMMWHRRLGHMSERGLKILAERNLLSGLKMVTL 405

Query: 272 DFCK*CCVMGRQHKSLF 322
            FC+  CV  +QH+  F
Sbjct: 406 PFCE-HCVTSKQHRLQF 421


>gb|KYP38095.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1256

 Score =  135 bits (340), Expect(3) = 1e-73
 Identities = 60/115 (52%), Positives = 82/115 (71%)
 Frame = +1

Query: 679  NRTLTERARSLRLQADMSKGFWAMSVNHACHLVNRSPSTAIDLQIPEEIWRGEKINYSQL 858
            NRTL ER R++   A ++K FWA +V  AC+L+NRSPSTAI L+ P E+W G+  NYS L
Sbjct: 539  NRTLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWNGKPSNYSSL 598

Query: 859  RIFGCPAYALVDSHKRNKLEAKSKKCIFIGFSHGVKGYKLWNLETNDAFMSRDVV 1023
             +FGCP Y + +S +R KL+ KS+KCIF+G++  VKGY+LW+       +SRDVV
Sbjct: 599  HVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVV 653



 Score =  124 bits (312), Expect(3) = 1e-73
 Identities = 61/113 (53%), Positives = 80/113 (70%)
 Frame = +3

Query: 345 KGVLDLIHSDVWGPSPVASIGGARYFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVE 524
           K +LDLIHSDVW  SP  S+GGA+YFV+FIDD+SR++WVY +K KSDVF  FK +K  VE
Sbjct: 429 KHILDLIHSDVW-ESPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVE 487

Query: 525 NRKGIKVKVLRSDNGGEYTSEEFKKYLADEGIYHQLSIPERSEQNGVAERIKQ 683
              G ++K LR+DNGGEY   +F  +   EGI  Q ++    +QNGVAER+ +
Sbjct: 488 LDTGKRIKCLRTDNGGEYIDGDFLAFCKQEGIKRQFTVAHTPQQNGVAERMNR 540



 Score = 68.2 bits (165), Expect(3) = 1e-73
 Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
 Frame = +2

Query: 98  TKNLYRLVGSVI--VDDVTVATEKEDDTRLWHIRLGHMSEKGLQVLHRKGVLSGIKQCKL 271
           T NLY L+G  +   D    A  +E+ T +WH RLGHMSE+GL++L  + +LSG+K   L
Sbjct: 346 TSNLYLLLGETLQEADASVAAISQEEATMMWHRRLGHMSERGLKILAERNLLSGLKMVTL 405

Query: 272 DFCK*CCVMGRQHKSLF 322
            FC+  CV  +QH+  F
Sbjct: 406 PFCE-HCVTSKQHRLQF 421


>gb|KYP53032.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1305

 Score =  135 bits (339), Expect(3) = 1e-73
 Identities = 60/115 (52%), Positives = 82/115 (71%)
 Frame = +1

Query: 679  NRTLTERARSLRLQADMSKGFWAMSVNHACHLVNRSPSTAIDLQIPEEIWRGEKINYSQL 858
            NRTL ER R++   A ++K FWA +V  AC+L+NRSPSTAI L+ P E+W G+  NYS L
Sbjct: 588  NRTLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWSGKPSNYSSL 647

Query: 859  RIFGCPAYALVDSHKRNKLEAKSKKCIFIGFSHGVKGYKLWNLETNDAFMSRDVV 1023
             +FGCP Y + +S +R KL+ KS+KCIF+G++  VKGY+LW+       +SRDVV
Sbjct: 648  HVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVV 702



 Score =  124 bits (312), Expect(3) = 1e-73
 Identities = 61/113 (53%), Positives = 80/113 (70%)
 Frame = +3

Query: 345 KGVLDLIHSDVWGPSPVASIGGARYFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVE 524
           K +LDLIHSDVW  SP  S+GGA+YFV+FIDD+SR++WVY +K KSDVF  FK +K  VE
Sbjct: 478 KHILDLIHSDVW-ESPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVE 536

Query: 525 NRKGIKVKVLRSDNGGEYTSEEFKKYLADEGIYHQLSIPERSEQNGVAERIKQ 683
              G ++K LR+DNGGEY   +F  +   EGI  Q ++    +QNGVAER+ +
Sbjct: 537 LDTGKRIKCLRTDNGGEYIDGDFLAFCKQEGIKRQFTVAHTPQQNGVAERMNR 589



 Score = 68.2 bits (165), Expect(3) = 1e-73
 Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
 Frame = +2

Query: 98  TKNLYRLVGSVI--VDDVTVATEKEDDTRLWHIRLGHMSEKGLQVLHRKGVLSGIKQCKL 271
           T NLY L+G  +   D    A  +E+ T +WH RLGHMSE+GL++L  + +LSG+K   L
Sbjct: 395 TSNLYLLLGETLQEADASVAAISQEEATMMWHRRLGHMSERGLKILAERNLLSGLKMVTL 454

Query: 272 DFCK*CCVMGRQHKSLF 322
            FC+  CV  +QH+  F
Sbjct: 455 PFCE-HCVTSKQHRLQF 470


>gb|KYP36645.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1256

 Score =  135 bits (339), Expect(3) = 1e-73
 Identities = 60/115 (52%), Positives = 82/115 (71%)
 Frame = +1

Query: 679  NRTLTERARSLRLQADMSKGFWAMSVNHACHLVNRSPSTAIDLQIPEEIWRGEKINYSQL 858
            NRTL ER R++   A ++K FWA +V  AC+L+NRSPSTAI L+ P E+W G+  NYS L
Sbjct: 539  NRTLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWSGKPSNYSSL 598

Query: 859  RIFGCPAYALVDSHKRNKLEAKSKKCIFIGFSHGVKGYKLWNLETNDAFMSRDVV 1023
             +FGCP Y + +S +R KL+ KS+KCIF+G++  VKGY+LW+       +SRDVV
Sbjct: 599  HVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVV 653



 Score =  124 bits (312), Expect(3) = 1e-73
 Identities = 61/113 (53%), Positives = 80/113 (70%)
 Frame = +3

Query: 345 KGVLDLIHSDVWGPSPVASIGGARYFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVE 524
           K +LDLIHSDVW  SP  S+GGA+YFV+FIDD+SR++WVY +K KSDVF  FK +K  VE
Sbjct: 429 KHILDLIHSDVW-ESPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVE 487

Query: 525 NRKGIKVKVLRSDNGGEYTSEEFKKYLADEGIYHQLSIPERSEQNGVAERIKQ 683
              G ++K LR+DNGGEY   +F  +   EGI  Q ++    +QNGVAER+ +
Sbjct: 488 LDTGKRIKCLRTDNGGEYIDGDFLAFCKQEGIKRQFTVAHTPQQNGVAERMNR 540



 Score = 68.2 bits (165), Expect(3) = 1e-73
 Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
 Frame = +2

Query: 98  TKNLYRLVGSVI--VDDVTVATEKEDDTRLWHIRLGHMSEKGLQVLHRKGVLSGIKQCKL 271
           T NLY L+G  +   D    A  +E+ T +WH RLGHMSE+GL++L  + +LSG+K   L
Sbjct: 346 TSNLYLLLGETLQEADASVAAISQEEATMMWHRRLGHMSERGLKILAERNLLSGLKMVTL 405

Query: 272 DFCK*CCVMGRQHKSLF 322
            FC+  CV  +QH+  F
Sbjct: 406 PFCE-HCVTSKQHRLQF 421


>gb|PKA55182.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 286

 Score =  155 bits (391), Expect(3) = 2e-73
 Identities = 69/121 (57%), Positives = 91/121 (75%)
 Frame = +3

Query: 321 FLSRHISPKGVLDLIHSDVWGPSPVASIGGARYFVTFIDDFSRKVWVYFLKHKSDVFQTF 500
           F++ +   K + + +HSDVWGPSPV S+GGA+YFVTFIDD+ RKVWVYFL+HKS+VF+ F
Sbjct: 39  FITSNKRSKNISEYVHSDVWGPSPVTSLGGAKYFVTFIDDYLRKVWVYFLQHKSEVFEKF 98

Query: 501 KVWKKLVENRKGIKVKVLRSDNGGEYTSEEFKKYLADEGIYHQLSIPERSEQNGVAERIK 680
           K WK  +E   G  +KVLR+DNGGEYTS+EF+ +   EGI    +IP   +QNGVAER+ 
Sbjct: 99  KYWKANIEKTTGKYIKVLRTDNGGEYTSKEFQDFCLKEGITRHFTIPNTPQQNGVAERMN 158

Query: 681 Q 683
           +
Sbjct: 159 R 159



 Score =  129 bits (323), Expect(3) = 2e-73
 Identities = 58/114 (50%), Positives = 82/114 (71%)
 Frame = +1

Query: 679  NRTLTERARSLRLQADMSKGFWAMSVNHACHLVNRSPSTAIDLQIPEEIWRGEKINYSQL 858
            NRTL ER R +RL A +SK FWA SVN   +LVNRSPS A++L+ PEE+W G+ ++YS L
Sbjct: 158  NRTLLERERCMRLFAGLSKSFWAESVNTTYYLVNRSPSLALELKSPEEVWLGKPVDYSNL 217

Query: 859  RIFGCPAYALVDSHKRNKLEAKSKKCIFIGFSHGVKGYKLWNLETNDAFMSRDV 1020
             IF CP Y L+   +R KL++KSK+CIF+G++  VK YK+W+  T  + + +D+
Sbjct: 218  HIFSCPVYILLQDTERTKLDSKSKRCIFMGYASDVKWYKVWDPNTRKSELCKDI 271



 Score = 43.1 bits (100), Expect(3) = 2e-73
 Identities = 20/40 (50%), Positives = 28/40 (70%)
 Frame = +2

Query: 203 MSEKGLQVLHRKGVLSGIKQCKLDFCK*CCVMGRQHKSLF 322
           MSE+GL  LH + +L GIK CK+DFC+  CV+ +Q +  F
Sbjct: 1   MSERGLLELHNRKLLKGIKLCKIDFCE-SCVLSKQCRVKF 39


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1278

 Score =  137 bits (345), Expect(3) = 4e-73
 Identities = 62/113 (54%), Positives = 80/113 (70%)
 Frame = +3

Query: 345 KGVLDLIHSDVWGPSPVASIGGARYFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVE 524
           KG+LD +H+D+WGPS   S+GGARY +T IDD+SRKVW YFLKHK D F  FK WK ++E
Sbjct: 482 KGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIE 541

Query: 525 NRKGIKVKVLRSDNGGEYTSEEFKKYLADEGIYHQLSIPERSEQNGVAERIKQ 683
            +   +VKVLR+DN GE+ S+ F  Y   EGI    +IP   +QNGVAER+ +
Sbjct: 542 RQTEKEVKVLRTDNAGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNR 594



 Score =  130 bits (327), Expect(3) = 4e-73
 Identities = 63/115 (54%), Positives = 81/115 (70%)
 Frame = +1

Query: 679  NRTLTERARSLRLQADMSKGFWAMSVNHACHLVNRSPSTAIDLQIPEEIWRGEKINYSQL 858
            NRT+  +AR +   A M+K FWA + N AC+L+NRSPS  ++ + P EIW G   +YSQL
Sbjct: 593  NRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEIWSGMPADYSQL 652

Query: 859  RIFGCPAYALVDSHKRNKLEAKSKKCIFIGFSHGVKGYKLWNLETNDAFMSRDVV 1023
            R+FGC AYA VD+    KLE ++ KC+F+G+  GVKGYKLWN ETN  FMSR VV
Sbjct: 653  RVFGCTAYAHVDN---EKLEPRAIKCLFLGYGLGVKGYKLWNPETNKTFMSRSVV 704



 Score = 58.5 bits (140), Expect(3) = 4e-73
 Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
 Frame = +2

Query: 104 NLYRLVGSVIVDDVTVATEKEDD---TRLWHIRLGHMSEKGLQVLHRKGVLSGIKQCKLD 274
           NLY L GS +   VT A   +D+   T LWH+RLGHMSE G+  L ++ +L G  Q  + 
Sbjct: 400 NLYVLRGSTLHGSVTAAAVTKDEPNKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMK 459

Query: 275 FCK*CCVMGRQHKSLF 322
           FC+  CV G+  +  F
Sbjct: 460 FCE-RCVFGKHKRVKF 474


>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
          Length = 2351

 Score =  130 bits (328), Expect(3) = 5e-73
 Identities = 64/116 (55%), Positives = 85/116 (73%), Gaps = 2/116 (1%)
 Frame = +1

Query: 679  NRTLTERARSLRLQADMSKGFWAMSVNHACHLVNRSPSTAIDLQIPEEIWRGEKINYSQL 858
            NRTL ERAR +R  A + + FWA +VN AC+LVNRSPSTAI+L+ PEE+W G   +YS L
Sbjct: 1086 NRTLLERARCMRSNAGLGEEFWAEAVNTACYLVNRSPSTAIELKTPEEVWSGSPADYSGL 1145

Query: 859  RIFGCPAYALVDSHKRNKLEAKSKKCIFIGFSHGVKGYKLW--NLETNDAFMSRDV 1020
            R+FGCPAYA V+     KL+ ++KKCIF+G+  GVKGY+LW  +  ++   +SRDV
Sbjct: 1146 RVFGCPAYAHVN---EGKLKPRAKKCIFLGYGQGVKGYRLWCPDPVSSKFIISRDV 1198



 Score =  129 bits (323), Expect(3) = 5e-73
 Identities = 60/113 (53%), Positives = 79/113 (69%)
 Frame = +3

Query: 345  KGVLDLIHSDVWGPSPVASIGGARYFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVE 524
            KG +D  HSD+WGPSP  S GG RY +TFIDD+SRKVWVYFLK K +V   FK +K L+E
Sbjct: 975  KGTVDYFHSDLWGPSPTISKGGYRYLLTFIDDYSRKVWVYFLKSKYEVLINFKQFKALIE 1034

Query: 525  NRKGIKVKVLRSDNGGEYTSEEFKKYLADEGIYHQLSIPERSEQNGVAERIKQ 683
            N+ G K+K  R+DNG E+ S EF ++  +EGI    ++    +QNGVAER+ +
Sbjct: 1035 NQTGKKIKRFRTDNGLEFCSGEFNEFCKNEGIVRHRTVRRTPQQNGVAERMNR 1087



 Score = 66.2 bits (160), Expect(3) = 5e-73
 Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
 Frame = +2

Query: 86   RYNWTKNLYRLVGSVIVDDVTVATEKE---DDTRLWHIRLGHMSEKGLQVLHRKGVLSGI 256
            R N  + LY L GS +     V++  +   D T+LWH+RLGHMSE+GL VL ++G+LSG 
Sbjct: 887  RGNLERGLYFLDGSSVTGVAGVSSSDDLDSDTTKLWHMRLGHMSERGLSVLSKRGLLSGQ 946

Query: 257  KQCKLDFCK*CCVMGRQHKSLF 322
               KL+FC+  CV G+Q +  F
Sbjct: 947  CTGKLNFCE-HCVFGKQTRVKF 967


>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
          Length = 1841

 Score =  130 bits (328), Expect(3) = 5e-73
 Identities = 64/116 (55%), Positives = 85/116 (73%), Gaps = 2/116 (1%)
 Frame = +1

Query: 679  NRTLTERARSLRLQADMSKGFWAMSVNHACHLVNRSPSTAIDLQIPEEIWRGEKINYSQL 858
            NRTL ERAR +R  A + + FWA +VN AC+LVNRSPSTAI+L+ PEE+W G   +YS L
Sbjct: 1107 NRTLLERARCMRSNAGLGEEFWAEAVNTACYLVNRSPSTAIELKTPEEVWSGSPADYSGL 1166

Query: 859  RIFGCPAYALVDSHKRNKLEAKSKKCIFIGFSHGVKGYKLW--NLETNDAFMSRDV 1020
            R+FGCPAYA V+     KL+ ++KKCIF+G+  GVKGY+LW  +  ++   +SRDV
Sbjct: 1167 RVFGCPAYAHVN---EGKLKPRAKKCIFLGYGQGVKGYRLWCPDPVSSKFIISRDV 1219



 Score =  129 bits (323), Expect(3) = 5e-73
 Identities = 60/113 (53%), Positives = 79/113 (69%)
 Frame = +3

Query: 345  KGVLDLIHSDVWGPSPVASIGGARYFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVE 524
            KG +D  HSD+WGPSP  S GG RY +TFIDD+SRKVWVYFLK K +V   FK +K L+E
Sbjct: 996  KGTVDYFHSDLWGPSPTISKGGYRYLLTFIDDYSRKVWVYFLKSKYEVLINFKQFKALIE 1055

Query: 525  NRKGIKVKVLRSDNGGEYTSEEFKKYLADEGIYHQLSIPERSEQNGVAERIKQ 683
            N+ G K+K  R+DNG E+ S EF ++  +EGI    ++    +QNGVAER+ +
Sbjct: 1056 NQTGKKIKRFRTDNGLEFCSGEFNEFCKNEGIVRHRTVRRTPQQNGVAERMNR 1108



 Score = 66.2 bits (160), Expect(3) = 5e-73
 Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
 Frame = +2

Query: 86   RYNWTKNLYRLVGSVIVDDVTVATEKE---DDTRLWHIRLGHMSEKGLQVLHRKGVLSGI 256
            R N  + LY L GS +     V++  +   D T+LWH+RLGHMSE+GL VL ++G+LSG 
Sbjct: 908  RGNLERGLYFLDGSSVTGVAGVSSSDDLDSDTTKLWHMRLGHMSERGLSVLSKRGLLSGQ 967

Query: 257  KQCKLDFCK*CCVMGRQHKSLF 322
               KL+FC+  CV G+Q +  F
Sbjct: 968  CTGKLNFCE-HCVFGKQTRVKF 988


>gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa Japonica Group]
 gb|AAL75759.1| Putative pol polyprotein [Oryza sativa Japonica Group]
 gb|AAP51772.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1005

 Score =  139 bits (349), Expect(3) = 6e-73
 Identities = 63/113 (55%), Positives = 80/113 (70%)
 Frame = +3

Query: 345 KGVLDLIHSDVWGPSPVASIGGARYFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVE 524
           KG+LD +H+D+WGPS   S+GGARY +T IDD SRKVW YFLKHK D F  FK WK ++E
Sbjct: 219 KGILDYVHADLWGPSHKPSLGGARYMLTIIDDHSRKVWPYFLKHKDDTFAAFKEWKVMIE 278

Query: 525 NRKGIKVKVLRSDNGGEYTSEEFKKYLADEGIYHQLSIPERSEQNGVAERIKQ 683
            +   +VKVLR+DNGGE+ S+ F  Y   EGI    +IP   +QNGVAER+ +
Sbjct: 279 RQTEKEVKVLRTDNGGEFCSDAFDDYYRKEGIVRHYTIPYTPQQNGVAERMNR 331



 Score =  129 bits (323), Expect(3) = 6e-73
 Identities = 60/115 (52%), Positives = 80/115 (69%)
 Frame = +1

Query: 679  NRTLTERARSLRLQADMSKGFWAMSVNHACHLVNRSPSTAIDLQIPEEIWRGEKINYSQL 858
            NRT+  +A  +   A M+K FWA + N AC+L+NRSPS  ++ + P E+W G   +YSQL
Sbjct: 330  NRTIISKAHCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEVWSGMSADYSQL 389

Query: 859  RIFGCPAYALVDSHKRNKLEAKSKKCIFIGFSHGVKGYKLWNLETNDAFMSRDVV 1023
            R+FGC AYA VD+    KLE ++ KC+F+G+  GVKGYKLWN ETN  FMSR V+
Sbjct: 390  RVFGCTAYAHVDN---GKLEPRAIKCLFLGYGSGVKGYKLWNPETNKTFMSRSVI 441



 Score = 57.8 bits (138), Expect(3) = 6e-73
 Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
 Frame = +2

Query: 104 NLYRLVGSVIVDDVTVATEKEDD---TRLWHIRLGHMSEKGLQVLHRKGVLSGIKQCKLD 274
           NLY L GS +   VT A   +D+   T LWH+RLGHMSE G+  L ++ +L G  Q  + 
Sbjct: 137 NLYVLRGSTLHGSVTAAAVTKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMK 196

Query: 275 FCK*CCVMGRQHK 313
           FC+  CV G+ HK
Sbjct: 197 FCE-HCVFGK-HK 207


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
 gb|ABF96427.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1326

 Score =  137 bits (346), Expect(3) = 1e-72
 Identities = 63/113 (55%), Positives = 80/113 (70%)
 Frame = +3

Query: 345 KGVLDLIHSDVWGPSPVASIGGARYFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVE 524
           KG+LD +H+D+WGPS  A +GGARY +T IDD+SRKVW YFLKHK D F  FK WK  +E
Sbjct: 482 KGILDYVHTDLWGPSRKAYLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVRIE 541

Query: 525 NRKGIKVKVLRSDNGGEYTSEEFKKYLADEGIYHQLSIPERSEQNGVAERIKQ 683
            +   +VKVLR+DNGGE+ S+ F  Y   EGI    +IP   +QNGVAER+ +
Sbjct: 542 RQTEKEVKVLRTDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNR 594



 Score =  125 bits (315), Expect(3) = 1e-72
 Identities = 60/115 (52%), Positives = 79/115 (68%)
 Frame = +1

Query: 679  NRTLTERARSLRLQADMSKGFWAMSVNHACHLVNRSPSTAIDLQIPEEIWRGEKINYSQL 858
            NRT+  +AR +   A M+K FWA + N AC+L+NRSPS  ++ + P E+W G   +YSQL
Sbjct: 593  NRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEVWSGMPADYSQL 652

Query: 859  RIFGCPAYALVDSHKRNKLEAKSKKCIFIGFSHGVKGYKLWNLETNDAFMSRDVV 1023
            R+FGC AYA VD+    KLE ++ KC+F+G+  GVK YKLWN ETN  FM R VV
Sbjct: 653  RVFGCTAYAHVDN---GKLEPRAIKCLFLGYGSGVKRYKLWNPETNKTFMRRSVV 704



 Score = 60.8 bits (146), Expect(3) = 1e-72
 Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
 Frame = +2

Query: 104 NLYRLVGSVIVDDVTVATEKEDD---TRLWHIRLGHMSEKGLQVLHRKGVLSGIKQCKLD 274
           NLY L GS +   VT A   +D+   T LWH+RLGHMSE G+  L ++ +L G  Q K+ 
Sbjct: 400 NLYVLRGSTLHGSVTAAAVSKDEPIKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGKMK 459

Query: 275 FCK*CCVMGRQHKSLF 322
           FC+  CV G+  +  F
Sbjct: 460 FCE-HCVFGKHKRVKF 474