BLASTX nr result

ID: Ophiopogon22_contig00020020 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon22_contig00020020
         (398 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020268024.1| thylakoid membrane protein TERC, chloroplast...   134   3e-35
ref|XP_017699304.1| PREDICTED: thylakoid membrane protein TERC, ...    59   2e-07
ref|XP_008793666.1| PREDICTED: thylakoid membrane protein TERC, ...    59   2e-07
ref|XP_019706392.1| PREDICTED: thylakoid membrane protein TERC, ...    55   4e-06
ref|XP_020086482.1| thylakoid membrane protein TERC, chloroplast...    54   7e-06

>ref|XP_020268024.1| thylakoid membrane protein TERC, chloroplastic isoform X1
           [Asparagus officinalis]
 gb|ONK67830.1| uncharacterized protein A4U43_C05F4230 [Asparagus officinalis]
          Length = 377

 Score =  134 bits (337), Expect = 3e-35
 Identities = 73/118 (61%), Positives = 86/118 (72%), Gaps = 2/118 (1%)
 Frame = -3

Query: 348 MGLASTIPLKFEARAFRARTSLPKTLALTTSP--CHVSFFTSQSSVGRHFYGSRLSQMQC 175
           MG ASTIPL+FEA   RA    P++++L +S    HVSFFTSQS VGRH YG RLSQMQC
Sbjct: 1   MGFASTIPLRFEAGVCRAPIRSPESISLLSSNRRYHVSFFTSQSQVGRHCYGLRLSQMQC 60

Query: 174 LRCTEKDDSLVTEEMLKMNPQSHDKADNAETDGTDLSSGGKQELSTDRAYSIRNVVLW 1
            R TE+DDSL TEEMLK NPQSHDK +NAE      SS  K++ STDR+ +IR+V LW
Sbjct: 61  FRGTERDDSLSTEEMLKNNPQSHDKKENAEKAIIGSSSDRKRDPSTDRSSAIRSVALW 118


>ref|XP_017699304.1| PREDICTED: thylakoid membrane protein TERC, chloroplastic isoform
           X2 [Phoenix dactylifera]
          Length = 364

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
 Frame = -3

Query: 321 KFEARAFRARTSLPKTLALTTSPCHVSFFTSQ-SSVGRHFYGSRLSQMQCLRCTEKDDSL 145
           +F    FRAR     + +  +S  H S  +   SSVG   YG+RL +M+  + TE++   
Sbjct: 17  RFGPELFRARPRSTLSFSFASSLRHASASSCFISSVGSRRYGTRLLRMRHAKETEQEGLS 76

Query: 144 VTEEMLKMNPQSHDKADNAETDGTDLSSGGKQELSTDRAYSIRNVVLW 1
           ++EE+ K + QSHD  +      +D  SGGKQ+  T +A S R V  W
Sbjct: 77  ISEEVAKTSSQSHDGLNIDGKAASDPPSGGKQDSVTRKASSARTVAFW 124


>ref|XP_008793666.1| PREDICTED: thylakoid membrane protein TERC, chloroplastic isoform
           X1 [Phoenix dactylifera]
          Length = 383

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
 Frame = -3

Query: 321 KFEARAFRARTSLPKTLALTTSPCHVSFFTSQ-SSVGRHFYGSRLSQMQCLRCTEKDDSL 145
           +F    FRAR     + +  +S  H S  +   SSVG   YG+RL +M+  + TE++   
Sbjct: 17  RFGPELFRARPRSTLSFSFASSLRHASASSCFISSVGSRRYGTRLLRMRHAKETEQEGLS 76

Query: 144 VTEEMLKMNPQSHDKADNAETDGTDLSSGGKQELSTDRAYSIRNVVLW 1
           ++EE+ K + QSHD  +      +D  SGGKQ+  T +A S R V  W
Sbjct: 77  ISEEVAKTSSQSHDGLNIDGKAASDPPSGGKQDSVTRKASSARTVAFW 124


>ref|XP_019706392.1| PREDICTED: thylakoid membrane protein TERC, chloroplastic [Elaeis
           guineensis]
          Length = 372

 Score = 55.1 bits (131), Expect = 4e-06
 Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
 Frame = -3

Query: 303 FRARTSLPKTLALTTSPCHVSFFTSQ-SSVGRHFYGSRLSQMQCLRCTEKDDSLVTEEML 127
           FRAR     +L+  +S  H S F+S  SSVG    G+R  +M+  + TE++   V+EEM 
Sbjct: 23  FRARFLSIPSLSFASSLRHASAFSSSISSVGSRRGGTRTLRMRHAKGTEQEGFSVSEEMA 82

Query: 126 KMNPQSHDKADNAETDGTDLSSGGKQELSTDRAYSIRNVVLW 1
           K + QS D+ +      +D SSGG+Q+  T    S R V LW
Sbjct: 83  KTSSQSRDELNIDAKTASDPSSGGQQDSVTS---SARTVALW 121


>ref|XP_020086482.1| thylakoid membrane protein TERC, chloroplastic isoform X1 [Ananas
           comosus]
 ref|XP_020086483.1| thylakoid membrane protein TERC, chloroplastic isoform X1 [Ananas
           comosus]
 ref|XP_020086484.1| thylakoid membrane protein TERC, chloroplastic isoform X1 [Ananas
           comosus]
 ref|XP_020086485.1| thylakoid membrane protein TERC, chloroplastic isoform X1 [Ananas
           comosus]
 ref|XP_020086487.1| thylakoid membrane protein TERC, chloroplastic isoform X1 [Ananas
           comosus]
 ref|XP_020086488.1| thylakoid membrane protein TERC, chloroplastic isoform X1 [Ananas
           comosus]
 ref|XP_020086489.1| thylakoid membrane protein TERC, chloroplastic isoform X1 [Ananas
           comosus]
 ref|XP_020086490.1| thylakoid membrane protein TERC, chloroplastic isoform X1 [Ananas
           comosus]
          Length = 384

 Score = 54.3 bits (129), Expect = 7e-06
 Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 10/126 (7%)
 Frame = -3

Query: 348 MGLASTI-------PLKFEARAFRART--SLPKTL-ALTTSPCHVSFFTSQSSVGRHFYG 199
           M LAS I       PL+F+    RAR+  SL ++L A   +    +  +S SS+ R   G
Sbjct: 1   MALASPIHRPTLRTPLRFDPSPRRARSLYSLSRSLFAAAAAAAATTTSSSSSSLARCRRG 60

Query: 198 SRLSQMQCLRCTEKDDSLVTEEMLKMNPQSHDKADNAETDGTDLSSGGKQELSTDRAYSI 19
             L ++ C + TEK+D  VTEE+   + Q+HDK DN     ++ +    Q++ST    S 
Sbjct: 61  DSL-RVWCAKGTEKEDVSVTEELETSSTQTHDKIDNDGRLTSNSTPDSGQDVSTHVESSF 119

Query: 18  RNVVLW 1
           R V LW
Sbjct: 120 RTVALW 125


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