BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon22_contig00014558
         (1263 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020274150.1| LOW QUALITY PROTEIN: RNA pseudouridine synth...   588   0.0  
ref|XP_010935174.1| PREDICTED: RNA pseudouridine synthase 2, chl...   540   0.0  
ref|XP_009382727.1| PREDICTED: RNA pseudouridine synthase 2, chl...   536   0.0  
ref|XP_008806144.1| PREDICTED: RNA pseudouridine synthase 2, chl...   535   0.0  
ref|XP_020113503.1| RNA pseudouridine synthase 2, chloroplastic ...   515   e-179
ref|XP_020704971.1| RNA pseudouridine synthase 2, chloroplastic-...   502   e-174
gb|OVA15944.1| RNA-binding S4 domain [Macleaya cordata]               501   e-173
gb|PKA60768.1| RNA pseudouridine synthase 2, chloroplastic [Apos...   499   e-172
ref|XP_010241330.1| PREDICTED: RNA pseudouridine synthase 2, chl...   496   e-171
ref|XP_010241329.1| PREDICTED: RNA pseudouridine synthase 2, chl...   496   e-171
ref|XP_010241328.1| PREDICTED: RNA pseudouridine synthase 2, chl...   496   e-171
ref|XP_018675717.1| PREDICTED: RNA pseudouridine synthase 2, chl...   486   e-168
ref|XP_023875750.1| LOW QUALITY PROTEIN: RNA pseudouridine synth...   477   e-164
ref|XP_010533976.1| PREDICTED: RNA pseudouridine synthase 2, chl...   476   e-163
ref|XP_024040107.1| RNA pseudouridine synthase 2, chloroplastic ...   475   e-163
ref|XP_008445320.1| PREDICTED: RNA pseudouridine synthase 2, chl...   475   e-163
ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chl...   475   e-163
ref|XP_008806145.1| PREDICTED: RNA pseudouridine synthase 2, chl...   475   e-163
ref|XP_010416516.1| PREDICTED: RNA pseudouridine synthase 2, chl...   475   e-163
ref|XP_008445318.1| PREDICTED: RNA pseudouridine synthase 2, chl...   474   e-163

>ref|XP_020274150.1| LOW QUALITY PROTEIN: RNA pseudouridine synthase 2, chloroplastic
            [Asparagus officinalis]
          Length = 434

 Score =  588 bits (1516), Expect = 0.0
 Identities = 302/386 (78%), Positives = 323/386 (83%)
 Frame = +3

Query: 6    GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
            G+RFE  VD GSAKAR+DSWIAS                GLVAVNG TV KVSHRIKEGD
Sbjct: 56   GVRFEGIVDVGSAKARIDSWIASXXXXXXXXAX------GLVAVNGRTVQKVSHRIKEGD 109

Query: 186  KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
            KVSC VSELQPLRAEPEDIPLDIV+EDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC
Sbjct: 110  KVSCTVSELQPLRAEPEDIPLDIVFEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 169

Query: 366  KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
            +LP  A T+NKR +E+EE I+SSD+E EDF IDQS +EEF S+NNDALVRPGIVHRLDKG
Sbjct: 170  RLPTAACTDNKRCIESEECIDSSDNEIEDFPIDQS-IEEFSSDNNDALVRPGIVHRLDKG 228

Query: 546  TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
            TSGLLVIAKDEHSHSHLAEQFK H IHR+YISLTSGVP   SGRIE+PIARDSSNRIRMA
Sbjct: 229  TSGLLVIAKDEHSHSHLAEQFKNHIIHRVYISLTSGVPRPDSGRIEVPIARDSSNRIRMA 288

Query: 726  AVPVLKNSKHARYAASRYKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDEL 905
            AVP LKNSKHARYAASRYKVVE+FA GGSALV+WRLETGRTHQIRAHAKYLGVPLLGDEL
Sbjct: 289  AVPGLKNSKHARYAASRYKVVEVFAGGGSALVRWRLETGRTHQIRAHAKYLGVPLLGDEL 348

Query: 906  YGGTKGMAXXXXXXXXXXXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPD 1085
            YGGTKGMA                  M+SRLQRPCLHAL LGFTHPHTG YL+FSCPPPD
Sbjct: 349  YGGTKGMALSLLKPRIPSNSHGHLSCMVSRLQRPCLHALSLGFTHPHTGVYLRFSCPPPD 408

Query: 1086 DFSEALSLLRSFPRQSAVSSDMEIEV 1163
            DFSE LSLLRSF +Q+  +SD E+EV
Sbjct: 409  DFSEVLSLLRSFSQQTGENSDTELEV 434


>ref|XP_010935174.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Elaeis guineensis]
          Length = 449

 Score =  540 bits (1391), Expect = 0.0
 Identities = 269/371 (72%), Positives = 304/371 (81%)
 Frame = +3

Query: 6    GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
            GLR E  V+ G+ K R+DSWI+SRI+ VSRARI+SSIRSGLV VNG TV KVSH IK GD
Sbjct: 75   GLRLEERVEIGAEKTRLDSWISSRIETVSRARIQSSIRSGLVTVNGRTVDKVSHIIKGGD 134

Query: 186  KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
             VSC VSELQPLRAE EDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNA+L+HC
Sbjct: 135  MVSCTVSELQPLRAEAEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAILHHC 194

Query: 366  KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
            +LP +A  N  +  E+E+  ESSDSE +++  DQSSVE   SEN++ALVRPGIVHRLDKG
Sbjct: 195  RLPTIACVNKSKISESEDCSESSDSEMDNYYFDQSSVEGISSENSEALVRPGIVHRLDKG 254

Query: 546  TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
            TSGLLV+AKDEHSH+HLAEQFK HTIHR+YISLT GVP   SGRIEIPIARDS+NRIRMA
Sbjct: 255  TSGLLVVAKDEHSHAHLAEQFKLHTIHRVYISLTCGVPNPSSGRIEIPIARDSNNRIRMA 314

Query: 726  AVPVLKNSKHARYAASRYKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDEL 905
            AV    NS+HARYAASRYKV+E+   GGSALV+WRLETGRTHQIRAHAKY+G+PLLGDE+
Sbjct: 315  AVLGTSNSRHARYAASRYKVIELLGRGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEV 374

Query: 906  YGGTKGMAXXXXXXXXXXXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPD 1085
            YGGTK MA                  ++S+LQRPCLHA  LGF HPHTGEYL+FSCPPPD
Sbjct: 375  YGGTKSMALSLLRPRTSSSHHGHLSQILSKLQRPCLHASSLGFKHPHTGEYLRFSCPPPD 434

Query: 1086 DFSEALSLLRS 1118
            DF+E L  L+S
Sbjct: 435  DFAEVLDQLQS 445


>ref|XP_009382727.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Musa acuminata subsp. malaccensis]
 ref|XP_009382728.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Musa acuminata subsp. malaccensis]
          Length = 440

 Score =  536 bits (1380), Expect = 0.0
 Identities = 265/371 (71%), Positives = 307/371 (82%)
 Frame = +3

Query: 6    GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
            G+R E  V+ G+ K R+DSWI+SRI+GVSRARI+SSIRSGLVAVNG TV+KVSH IK GD
Sbjct: 62   GVRLEERVEVGAEKTRIDSWISSRIRGVSRARIQSSIRSGLVAVNGRTVNKVSHIIKGGD 121

Query: 186  KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
             VSC++S+L PL+AEPED+PLDIVYED HV+VVNKPAHMVVHPAPGNANGTLVNA+L+HC
Sbjct: 122  MVSCMISKLLPLKAEPEDMPLDIVYEDEHVIVVNKPAHMVVHPAPGNANGTLVNAILHHC 181

Query: 366  KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
            +LP+ A  NN +  +TEE  ESSDS+ E+   DQSS+EE   EN +ALVRPGIVHRLDKG
Sbjct: 182  RLPIRAFANNIQISDTEECSESSDSDIEEVCADQSSMEEVGIENYEALVRPGIVHRLDKG 241

Query: 546  TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
            TSGLLV+AKD+HSH+HLAEQFK+HTIHR+Y+SLTSGVP    GRIEIPIARDS+NRIRM 
Sbjct: 242  TSGLLVVAKDDHSHAHLAEQFKKHTIHRVYMSLTSGVPNPSYGRIEIPIARDSNNRIRMV 301

Query: 726  AVPVLKNSKHARYAASRYKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDEL 905
            AV  L NS+HARYAASRYKV+E F  GG+ALVQWRLETGRTHQIRAHAKYLG+PLLGDE+
Sbjct: 302  AVSGLNNSRHARYAASRYKVIEDFMGGGAALVQWRLETGRTHQIRAHAKYLGIPLLGDEV 361

Query: 906  YGGTKGMAXXXXXXXXXXXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPD 1085
            YGGTK MA                  +IS+LQRPCLHA  +GF HPHTGE+L+FSCPPPD
Sbjct: 362  YGGTKDMALSLLRPRTPPTYHGHLSNIISKLQRPCLHAFSIGFKHPHTGEFLQFSCPPPD 421

Query: 1086 DFSEALSLLRS 1118
            DFS+ L  LRS
Sbjct: 422  DFSKVLDQLRS 432


>ref|XP_008806144.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Phoenix dactylifera]
          Length = 439

 Score =  535 bits (1379), Expect = 0.0
 Identities = 264/371 (71%), Positives = 306/371 (82%)
 Frame = +3

Query: 6    GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
            GLR E SV+ G+ K R+DSWI+SRIQGVSRARI+SSIRSG V VNG TV KVSH IK GD
Sbjct: 65   GLRLEESVEIGAEKTRLDSWISSRIQGVSRARIQSSIRSGFVVVNGRTVDKVSHIIKGGD 124

Query: 186  KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
             VSC VSELQPLRA+ EDIPLDIVYEDA+VLVVNKPAHMVVHPAPGN NGTLV+A+L+HC
Sbjct: 125  MVSCTVSELQPLRAKAEDIPLDIVYEDAYVLVVNKPAHMVVHPAPGNVNGTLVSAILHHC 184

Query: 366  KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
            +LP +A  +N ++ E+EE  ESSD+E +++  DQSSVE   SEN++ALVRPGIVHRLDKG
Sbjct: 185  RLPTIACVSNSKNSESEECSESSDNEMDNYYFDQSSVEGVSSENSEALVRPGIVHRLDKG 244

Query: 546  TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
            TSGLLV+AKDEHSH+HLAEQFK HTIHR+YISLT GVP   SGRIEIPIARDS+NRIRMA
Sbjct: 245  TSGLLVVAKDEHSHAHLAEQFKLHTIHRVYISLTCGVPNPSSGRIEIPIARDSNNRIRMA 304

Query: 726  AVPVLKNSKHARYAASRYKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDEL 905
            AV    NS+HARYAASRYKV+++   GGS+LV+WRLETGRTHQIRAHAKYLG+PLLGDE+
Sbjct: 305  AVSGTSNSRHARYAASRYKVIKVLGGGGSSLVEWRLETGRTHQIRAHAKYLGIPLLGDEV 364

Query: 906  YGGTKGMAXXXXXXXXXXXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPD 1085
            YGGTK MA                  ++S++QRPCLHA  LGF HPHTGE+L+FSCPPPD
Sbjct: 365  YGGTKSMALSLLRPRTSSSHHGHLSQILSKVQRPCLHASLLGFKHPHTGEHLRFSCPPPD 424

Query: 1086 DFSEALSLLRS 1118
            DF+E L  L+S
Sbjct: 425  DFAEVLDQLQS 435


>ref|XP_020113503.1| RNA pseudouridine synthase 2, chloroplastic isoform X1 [Ananas
            comosus]
 gb|OAY68405.1| RNA pseudouridine synthase 2, chloroplastic [Ananas comosus]
          Length = 430

 Score =  515 bits (1327), Expect = e-179
 Identities = 257/370 (69%), Positives = 298/370 (80%)
 Frame = +3

Query: 6    GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
            G R E +V+ GS ++R+D+W+ASRI+GVSRARI+SSIRSGLVAVNG TV KVSH +K GD
Sbjct: 52   GARLEEAVEVGSGRSRLDAWLASRIRGVSRARIQSSIRSGLVAVNGRTVDKVSHMVKGGD 111

Query: 186  KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
             +SC VSELQPLRAE EDIPLDIVYED HVLVVNKPAHMVVHPAPGNANGTLVNA+L+HC
Sbjct: 112  MISCTVSELQPLRAEAEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNANGTLVNAILHHC 171

Query: 366  KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
            +LPMV   N+    E++E ++SSD E + +  DQ S EE   E  +ALVRPGIVHRLDKG
Sbjct: 172  RLPMVTCVNDSTMSESDESLDSSDEEIDVYHADQFSTEELSLEVPEALVRPGIVHRLDKG 231

Query: 546  TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
            TSGLLV+AKDEHSH+HLAEQFK+HTI+R+YISLT+GVP   S RIEIPIARD +NR+RM 
Sbjct: 232  TSGLLVVAKDEHSHAHLAEQFKQHTINRVYISLTTGVPNPYSARIEIPIARDPNNRVRMV 291

Query: 726  AVPVLKNSKHARYAASRYKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDEL 905
            A+    N +HARYAASRY+V+E+ A GGSALV+WRLETGRTHQIRAHAKYLGVPLLGDE+
Sbjct: 292  AISG-SNHRHARYAASRYEVIEVLAGGGSALVKWRLETGRTHQIRAHAKYLGVPLLGDEV 350

Query: 906  YGGTKGMAXXXXXXXXXXXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPD 1085
            YGGTK MA                  MIS+L RPCLHAL LGF HP TGE+L+FSCPPPD
Sbjct: 351  YGGTKSMALSLLKPRTPSSHHGHLSHMISKLDRPCLHALSLGFEHPQTGEFLRFSCPPPD 410

Query: 1086 DFSEALSLLR 1115
            DFSE +  LR
Sbjct: 411  DFSEVVDQLR 420


>ref|XP_020704971.1| RNA pseudouridine synthase 2, chloroplastic-like isoform X1
            [Dendrobium catenatum]
          Length = 437

 Score =  502 bits (1292), Expect = e-174
 Identities = 251/372 (67%), Positives = 294/372 (79%)
 Frame = +3

Query: 3    TGLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEG 182
            TG+R   +V+ G  + RVDSWI+SRI G+SRAR++SSIR+GLV VNG  + KVSH +K G
Sbjct: 54   TGIRLAETVELGFERTRVDSWISSRIPGISRARVQSSIRTGLVTVNGRIIDKVSHILKGG 113

Query: 183  DKVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNH 362
            DKVSCVV EL+PL+AEPE+IPL+IVYED HVLVVNKPAHMVVHPAPGNANGTLVNA+LNH
Sbjct: 114  DKVSCVVCELEPLKAEPEEIPLNIVYEDEHVLVVNKPAHMVVHPAPGNANGTLVNAILNH 173

Query: 363  CKLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDK 542
            C+LP  A  N K S ET+   +SS++E  DF +  S  EE K+ ++D LVRPGIVHRLDK
Sbjct: 174  CQLPAGACINRKGSSETDN-TDSSENEVGDFYVGHS-YEELKTSSSDELVRPGIVHRLDK 231

Query: 543  GTSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRM 722
            GTSGLLV+AKDEHSH+HLA+QFK HTIHR Y+SL SGVP   SGRI IPI RD +NR RM
Sbjct: 232  GTSGLLVVAKDEHSHAHLAKQFKLHTIHRQYVSLVSGVPSPSSGRIAIPIVRDCNNRTRM 291

Query: 723  AAVPVLKNSKHARYAASRYKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDE 902
            A V  + +S++AR A+SRYKVVE+FA GGSALVQWRLETGRTHQIR HAKYLG+PLLGDE
Sbjct: 292  ATVSGINSSRNARNASSRYKVVEVFAAGGSALVQWRLETGRTHQIRTHAKYLGIPLLGDE 351

Query: 903  LYGGTKGMAXXXXXXXXXXXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPP 1082
            LYGGTKG+A                  M+S+LQRPCLHA  LGF HPHTGE+L FSCPPP
Sbjct: 352  LYGGTKGLALSLLKSRTPMSCHALVSDMVSKLQRPCLHAQSLGFKHPHTGEHLHFSCPPP 411

Query: 1083 DDFSEALSLLRS 1118
            DDF+E L  LR+
Sbjct: 412  DDFTEILHQLRT 423


>gb|OVA15944.1| RNA-binding S4 domain [Macleaya cordata]
          Length = 458

 Score =  501 bits (1291), Expect = e-173
 Identities = 246/376 (65%), Positives = 299/376 (79%)
 Frame = +3

Query: 6    GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
            G+  E +V +G+ K+R+DSW++ RI G+SRAR++SSI+SGLV+VNG  ++KVSH I+ GD
Sbjct: 71   GVTLEETVTNGTEKSRLDSWVSIRISGISRARVQSSIKSGLVSVNGRIINKVSHVIRAGD 130

Query: 186  KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
            KV+C +SELQPLRAEPEDIPLDIVYEDAHVLVVNKPA+MVVHPAPGN NGTLVN +L+HC
Sbjct: 131  KVNCTISELQPLRAEPEDIPLDIVYEDAHVLVVNKPANMVVHPAPGNPNGTLVNGILHHC 190

Query: 366  KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
            +LP+V+  N++   ET +    SD E E F  DQS  EE  S +  ALVRPGIVHRLDKG
Sbjct: 191  RLPIVSSPNSEMLSETGDI---SDEEFESFSSDQSYSEEVSSSSCAALVRPGIVHRLDKG 247

Query: 546  TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
            TSGLLV+AKDEHSH+ L+EQFK+HTIHR+Y+SLTSGVP   SGRIEIPI RD +NR+RM 
Sbjct: 248  TSGLLVVAKDEHSHAQLSEQFKQHTIHRVYVSLTSGVPSPTSGRIEIPIGRDVNNRLRMT 307

Query: 726  AVPVLKNSKHARYAASRYKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDEL 905
            AV    NS+ +RYAASRY+V+E+ ADGGSALV+WRLETGRTHQIRAHAKYLG+PLLGDE+
Sbjct: 308  AVSGPNNSRQSRYAASRYRVIEVLADGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEV 367

Query: 906  YGGTKGMAXXXXXXXXXXXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPD 1085
            YGGTKGMA                  ++++L+RPCLHA  LGF HPHTGE + FSCPPP 
Sbjct: 368  YGGTKGMALSLLRPKTPSNNHGHLSELVNKLERPCLHAFTLGFKHPHTGEVVNFSCPPPA 427

Query: 1086 DFSEALSLLRSFPRQS 1133
            DF+E LSLLR+  + S
Sbjct: 428  DFTEILSLLRNIKKIS 443


>gb|PKA60768.1| RNA pseudouridine synthase 2, chloroplastic [Apostasia shenzhenica]
          Length = 470

 Score =  499 bits (1284), Expect = e-172
 Identities = 253/382 (66%), Positives = 290/382 (75%), Gaps = 10/382 (2%)
 Frame = +3

Query: 3    TGLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHK-------- 158
            +G+R E  V+ GS K R+DSWI++RI GVSRAR++SSIRSGLV VNG  +HK        
Sbjct: 78   SGIRLEEMVEIGSEKVRIDSWISTRISGVSRARVQSSIRSGLVTVNGRVIHKSKLPPNSV 137

Query: 159  --VSHRIKEGDKVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNAN 332
               S  IK GDK+ C++SELQPLRAEPEDIPL+IVYEDAH+LVVNKPAHMVVHPAPGN N
Sbjct: 138  LQASLIIKGGDKICCLISELQPLRAEPEDIPLNIVYEDAHLLVVNKPAHMVVHPAPGNVN 197

Query: 333  GTLVNAVLNHCKLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALV 512
            GTLVNA+LNHC+LP+      K   ETE   +SSDSE +DF +D   VEE  S   +ALV
Sbjct: 198  GTLVNAILNHCQLPITTCMKRKSFSETEGATDSSDSEIDDFSLDYPLVEESNSSQKEALV 257

Query: 513  RPGIVHRLDKGTSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPI 692
            RPGIVHRLDKGTSGLLV+AKDE +H+HLAEQFKRHTIHR YIS+T GVP   SGRIEIPI
Sbjct: 258  RPGIVHRLDKGTSGLLVVAKDEQAHAHLAEQFKRHTIHRAYISMTCGVPSLSSGRIEIPI 317

Query: 693  ARDSSNRIRMAAVPVLKNSKHARYAASRYKVVEIFADGGSALVQWRLETGRTHQIRAHAK 872
            ARD +NR RMA V    +++HA YAASRY+ VEIFA+GG ALVQWRLETGRTHQIRAHAK
Sbjct: 318  ARDCNNRTRMATVS--GSNRHAHYAASRYEAVEIFANGGVALVQWRLETGRTHQIRAHAK 375

Query: 873  YLGVPLLGDELYGGTKGMAXXXXXXXXXXXXXXXXXXMISRLQRPCLHALYLGFTHPHTG 1052
            YLG+PL+GDELYGGTKGM                   +IS+L RPCLHA  LGF HPHT 
Sbjct: 376  YLGIPLMGDELYGGTKGMLLSLLYPRIALDQRGLVFELISKLDRPCLHAQSLGFEHPHTK 435

Query: 1053 EYLKFSCPPPDDFSEALSLLRS 1118
            EYL FSC PPDDF+E L +LRS
Sbjct: 436  EYLCFSCDPPDDFAEILQVLRS 457


>ref|XP_010241330.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X3
            [Nelumbo nucifera]
          Length = 443

 Score =  496 bits (1278), Expect = e-171
 Identities = 247/371 (66%), Positives = 293/371 (78%)
 Frame = +3

Query: 6    GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
            G+  E +V+  S K+R+DSWI+SRI G+SRAR++SSI+SGLV+VNG  + KVSH I+ GD
Sbjct: 67   GVCLEDTVEISSVKSRIDSWISSRIPGISRARVQSSIKSGLVSVNGRIIDKVSHVIRAGD 126

Query: 186  KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
            KV+C + ELQPLRAEPEDIPLDIVYED  VLVVNKPAHMVVHPAPGNANGTLVN +L+HC
Sbjct: 127  KVNCTIKELQPLRAEPEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTLVNGILHHC 186

Query: 366  KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
             LPMVA TN+K   ET++    SD E++ F   Q S+EE  S   +  VRPGIVHRLDKG
Sbjct: 187  SLPMVALTNSKVLSETDDI---SDDESDIFSSTQGSMEEVTSNICEVSVRPGIVHRLDKG 243

Query: 546  TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
            TSGLLV+AKDEHSH+HL+EQFK HTI+R+Y+SLT GVP   SGRIE+PI RD SNRIRMA
Sbjct: 244  TSGLLVVAKDEHSHAHLSEQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIRMA 303

Query: 726  AVPVLKNSKHARYAASRYKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDEL 905
            AVP   +S+ AR+AASRY+VVE+ A GGSALV+WRLETGRTHQIRAHAKYLG+PLLGDE+
Sbjct: 304  AVPSPNSSRQARHAASRYRVVEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEV 363

Query: 906  YGGTKGMAXXXXXXXXXXXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPD 1085
            YGGT+ MA                  ++S+LQRPCLHA  LGF HPHTGE ++FSCPPP 
Sbjct: 364  YGGTRNMALSLLRTRSHSSFHGDLSQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCPPPA 423

Query: 1086 DFSEALSLLRS 1118
            DF+E LS LRS
Sbjct: 424  DFTEVLSQLRS 434


>ref|XP_010241329.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Nelumbo nucifera]
          Length = 453

 Score =  496 bits (1278), Expect = e-171
 Identities = 247/371 (66%), Positives = 293/371 (78%)
 Frame = +3

Query: 6    GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
            G+  E +V+  S K+R+DSWI+SRI G+SRAR++SSI+SGLV+VNG  + KVSH I+ GD
Sbjct: 67   GVCLEDTVEISSVKSRIDSWISSRIPGISRARVQSSIKSGLVSVNGRIIDKVSHVIRAGD 126

Query: 186  KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
            KV+C + ELQPLRAEPEDIPLDIVYED  VLVVNKPAHMVVHPAPGNANGTLVN +L+HC
Sbjct: 127  KVNCTIKELQPLRAEPEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTLVNGILHHC 186

Query: 366  KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
             LPMVA TN+K   ET++    SD E++ F   Q S+EE  S   +  VRPGIVHRLDKG
Sbjct: 187  SLPMVALTNSKVLSETDDI---SDDESDIFSSTQGSMEEVTSNICEVSVRPGIVHRLDKG 243

Query: 546  TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
            TSGLLV+AKDEHSH+HL+EQFK HTI+R+Y+SLT GVP   SGRIE+PI RD SNRIRMA
Sbjct: 244  TSGLLVVAKDEHSHAHLSEQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIRMA 303

Query: 726  AVPVLKNSKHARYAASRYKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDEL 905
            AVP   +S+ AR+AASRY+VVE+ A GGSALV+WRLETGRTHQIRAHAKYLG+PLLGDE+
Sbjct: 304  AVPSPNSSRQARHAASRYRVVEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEV 363

Query: 906  YGGTKGMAXXXXXXXXXXXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPD 1085
            YGGT+ MA                  ++S+LQRPCLHA  LGF HPHTGE ++FSCPPP 
Sbjct: 364  YGGTRNMALSLLRTRSHSSFHGDLSQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCPPPA 423

Query: 1086 DFSEALSLLRS 1118
            DF+E LS LRS
Sbjct: 424  DFTEVLSQLRS 434


>ref|XP_010241328.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Nelumbo nucifera]
          Length = 471

 Score =  496 bits (1278), Expect = e-171
 Identities = 247/371 (66%), Positives = 293/371 (78%)
 Frame = +3

Query: 6    GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
            G+  E +V+  S K+R+DSWI+SRI G+SRAR++SSI+SGLV+VNG  + KVSH I+ GD
Sbjct: 67   GVCLEDTVEISSVKSRIDSWISSRIPGISRARVQSSIKSGLVSVNGRIIDKVSHVIRAGD 126

Query: 186  KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
            KV+C + ELQPLRAEPEDIPLDIVYED  VLVVNKPAHMVVHPAPGNANGTLVN +L+HC
Sbjct: 127  KVNCTIKELQPLRAEPEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTLVNGILHHC 186

Query: 366  KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
             LPMVA TN+K   ET++    SD E++ F   Q S+EE  S   +  VRPGIVHRLDKG
Sbjct: 187  SLPMVALTNSKVLSETDDI---SDDESDIFSSTQGSMEEVTSNICEVSVRPGIVHRLDKG 243

Query: 546  TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
            TSGLLV+AKDEHSH+HL+EQFK HTI+R+Y+SLT GVP   SGRIE+PI RD SNRIRMA
Sbjct: 244  TSGLLVVAKDEHSHAHLSEQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIRMA 303

Query: 726  AVPVLKNSKHARYAASRYKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDEL 905
            AVP   +S+ AR+AASRY+VVE+ A GGSALV+WRLETGRTHQIRAHAKYLG+PLLGDE+
Sbjct: 304  AVPSPNSSRQARHAASRYRVVEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEV 363

Query: 906  YGGTKGMAXXXXXXXXXXXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPD 1085
            YGGT+ MA                  ++S+LQRPCLHA  LGF HPHTGE ++FSCPPP 
Sbjct: 364  YGGTRNMALSLLRTRSHSSFHGDLSQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCPPPA 423

Query: 1086 DFSEALSLLRS 1118
            DF+E LS LRS
Sbjct: 424  DFTEVLSQLRS 434


>ref|XP_018675717.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Musa acuminata subsp. malaccensis]
          Length = 403

 Score =  486 bits (1250), Expect = e-168
 Identities = 243/342 (71%), Positives = 282/342 (82%)
 Frame = +3

Query: 6    GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
            G+R E  V+ G+ K R+DSWI+SRI+GVSRARI+SSIRSGLVAVNG TV+KVSH IK GD
Sbjct: 62   GVRLEERVEVGAEKTRIDSWISSRIRGVSRARIQSSIRSGLVAVNGRTVNKVSHIIKGGD 121

Query: 186  KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
             VSC++S+L PL+AEPED+PLDIVYED HV+VVNKPAHMVVHPAPGNANGTLVNA+L+HC
Sbjct: 122  MVSCMISKLLPLKAEPEDMPLDIVYEDEHVIVVNKPAHMVVHPAPGNANGTLVNAILHHC 181

Query: 366  KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
            +LP+ A  NN +  +TEE  ESSDS+ E+   DQSS+EE   EN +ALVRPGIVHRLDKG
Sbjct: 182  RLPIRAFANNIQISDTEECSESSDSDIEEVCADQSSMEEVGIENYEALVRPGIVHRLDKG 241

Query: 546  TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
            TSGLLV+AKD+HSH+HLAEQFK+HTIHR+Y+SLTSGVP    GRIEIPIARDS+NRIRM 
Sbjct: 242  TSGLLVVAKDDHSHAHLAEQFKKHTIHRVYMSLTSGVPNPSYGRIEIPIARDSNNRIRMV 301

Query: 726  AVPVLKNSKHARYAASRYKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDEL 905
            AV  L NS+HARYAASRYKV+E F  GG+ALVQWRLETGRTHQIRAHAKYLG+PLLGDE+
Sbjct: 302  AVSGLNNSRHARYAASRYKVIEDFMGGGAALVQWRLETGRTHQIRAHAKYLGIPLLGDEV 361

Query: 906  YGGTKGMAXXXXXXXXXXXXXXXXXXMISRLQRPCLHALYLG 1031
            YGGTK MA                  +IS+LQRPCLHA  +G
Sbjct: 362  YGGTKDMALSLLRPRTPPTYHGHLSNIISKLQRPCLHAFSIG 403


>ref|XP_023875750.1| LOW QUALITY PROTEIN: RNA pseudouridine synthase 2, chloroplastic
            [Quercus suber]
          Length = 443

 Score =  477 bits (1227), Expect = e-164
 Identities = 237/375 (63%), Positives = 282/375 (75%)
 Frame = +3

Query: 6    GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
            G+  E +VD  S K R+DSWI+SRI G+SRAR++SSIRSGLV+VNG  V KVSH +K GD
Sbjct: 70   GVNLEETVDINSGKLRLDSWISSRICGISRARVQSSIRSGLVSVNGRIVDKVSHNVKAGD 129

Query: 186  KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
             V+C +SELQPLRAEPE+IPLDIV+ED HVLVVNKPAHMVVHPAPGNA+GTLVN +L+HC
Sbjct: 130  MVNCTISELQPLRAEPENIPLDIVFEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHC 189

Query: 366  KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
             LP  A +N       EE +  ++  ++D L    S  E     + A +RPGIVHRLDKG
Sbjct: 190  SLPFAAFSN-------EEILSDAEDISDDDLSTDKSPNELNFSISGASIRPGIVHRLDKG 242

Query: 546  TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
            TSGLLV+AKDEHSH+HL+EQFK HTI R+YISLTSG+P   +GR+E+PI RD +NRIRMA
Sbjct: 243  TSGLLVVAKDEHSHAHLSEQFKLHTIQRVYISLTSGIPSPTAGRVEVPIGRDVNNRIRMA 302

Query: 726  AVPVLKNSKHARYAASRYKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDEL 905
            A+P   N + AR+AASRYKV+EI A GGSALV+WRLETGRTHQIRAHAKYLG+PLLGDE+
Sbjct: 303  AIPXSYNCRQARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEV 362

Query: 906  YGGTKGMAXXXXXXXXXXXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPD 1085
            YGGTK MA                  ++S L+RPCLHAL LGF HPHT E + FSCPPP 
Sbjct: 363  YGGTKNMALSLLRPRTAASHHGQLLQLVSGLERPCLHALALGFKHPHTMENVNFSCPPPA 422

Query: 1086 DFSEALSLLRSFPRQ 1130
            DF+E LS LR    Q
Sbjct: 423  DFAEILSQLRKIGTQ 437


>ref|XP_010533976.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Tarenaya
            hassleriana]
          Length = 435

 Score =  476 bits (1225), Expect = e-163
 Identities = 239/370 (64%), Positives = 279/370 (75%)
 Frame = +3

Query: 6    GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
            G++F+ +VD  + K R+DSWI+SR+ GVSRAR++SSIR GLV VNG  V KVSH +K GD
Sbjct: 70   GVKFQETVDVATGKIRLDSWISSRVHGVSRARVQSSIRLGLVCVNGRVVDKVSHNVKAGD 129

Query: 186  KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
             VSC +SELQPL+AEPED+PLDIVYED HVLVVNKPAHMVVHPAPGN NGTLVN +L+HC
Sbjct: 130  MVSCTISELQPLKAEPEDMPLDIVYEDNHVLVVNKPAHMVVHPAPGNPNGTLVNGILHHC 189

Query: 366  KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
             LP+VA+++ +            D + EDF  D+   E   S    A VRPGIVHRLDKG
Sbjct: 190  SLPIVAYSDTE-----------VDPDEEDFSEDE---ETMSSSAYSASVRPGIVHRLDKG 235

Query: 546  TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
            TSGLLV+AKDEHSH+HLAEQFK+HTI R+Y+SLT GVP    GRI IPI RD +NRIRMA
Sbjct: 236  TSGLLVVAKDEHSHAHLAEQFKQHTIERVYVSLTCGVPSPSHGRIVIPIGRDLNNRIRMA 295

Query: 726  AVPVLKNSKHARYAASRYKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDEL 905
            A+P L N   AR+AASRYKV+EI A GGSALV+WRLETGRTHQIRAHAKY+GVPLLGDE+
Sbjct: 296  AIPGLSNRGRARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYVGVPLLGDEV 355

Query: 906  YGGTKGMAXXXXXXXXXXXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPD 1085
            YG TK MA                  ++SRL RPCLHAL LGF HP TGE +KFSCPPP 
Sbjct: 356  YGATKSMALSLLQKRASRNDHGQILELVSRLDRPCLHALVLGFKHPCTGEDVKFSCPPPP 415

Query: 1086 DFSEALSLLR 1115
            DF+E L +LR
Sbjct: 416  DFAETLGMLR 425


>ref|XP_024040107.1| RNA pseudouridine synthase 2, chloroplastic [Citrus clementina]
          Length = 421

 Score =  475 bits (1223), Expect = e-163
 Identities = 238/380 (62%), Positives = 285/380 (75%)
 Frame = +3

Query: 6    GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
            G++ E +VD+ + K R+D+WI+SRI G+SRAR++SSIRSGLV+VNG  V KVSH +K GD
Sbjct: 57   GVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSVNGQVVSKVSHNVKGGD 116

Query: 186  KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
             V+C +SELQPLRAE EDIPLDIVYED +VLVVNKPAHMVVHPAPGNA GTLVN +L+HC
Sbjct: 117  MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176

Query: 366  KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
             LP +A +N +   + E               D S  EEF S  + A +RPGIVHRLDKG
Sbjct: 177  SLPTLASSNQEAFSDAE---------------DISDDEEFSSSISGASIRPGIVHRLDKG 221

Query: 546  TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
            TSGLLV+AKDEHSH+HL+EQFK HTI R+YISLTSGVP + SGRIE+PI+RD +NRIRMA
Sbjct: 222  TSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMA 281

Query: 726  AVPVLKNSKHARYAASRYKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDEL 905
            A+P       AR+AASRYKV+EI A GGSALV+WRLETGRTHQIRAHAKY+G+PLLGDE+
Sbjct: 282  AIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEV 341

Query: 906  YGGTKGMAXXXXXXXXXXXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPD 1085
            YGGTK MA                  ++S LQRPCLHA+ LGFTHPHT E ++FSCPPP 
Sbjct: 342  YGGTKNMAKSLLQPRTAPGSHGKVLKLVSGLQRPCLHAVALGFTHPHTREKIQFSCPPPA 401

Query: 1086 DFSEALSLLRSFPRQSAVSS 1145
            DF+E LS LR    +   S+
Sbjct: 402  DFAEILSQLREIGTEKLSSN 421


>ref|XP_008445320.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Cucumis melo]
          Length = 429

 Score =  475 bits (1223), Expect = e-163
 Identities = 238/380 (62%), Positives = 285/380 (75%)
 Frame = +3

Query: 6    GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
            G R E +VD    K R+DSWI+SRI G+SRAR++SSIR+GLV+VNG  + KVSH +K GD
Sbjct: 62   GTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAGD 121

Query: 186  KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
             ++C +SELQPLRAEPEDI LDIVYED HVLVVNKPAHMVVHPAPGNA GTLVNA+LNHC
Sbjct: 122  VINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHC 181

Query: 366  KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
             LPMV       S  T E+   SD  +++F    SS+E F S  ++A +RPGIVHRLDKG
Sbjct: 182  SLPMV-------STSTGEHQSDSDVSDDEF----SSIEVF-SRVSEAPIRPGIVHRLDKG 229

Query: 546  TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
            TSGLLV+AKDEHSH+HL+ QFK+H+I R+YISLT GVP   +GRIEIPI RD +NRIRM 
Sbjct: 230  TSGLLVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMT 289

Query: 726  AVPVLKNSKHARYAASRYKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDEL 905
            A    KN+ HA++AASRY V+EI A GGS+LV+WRLETGRTHQIRAHAKY+G+PLLGDE+
Sbjct: 290  ATHGTKNNPHAKHAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEV 349

Query: 906  YGGTKGMAXXXXXXXXXXXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPD 1085
            YGGTK MA                  ++S L+RPCLHAL LGF HPHTG+ ++FSCPPP 
Sbjct: 350  YGGTKSMAMSLLRTRASSNCHGQLMQLVSSLERPCLHALTLGFVHPHTGKNIRFSCPPPT 409

Query: 1086 DFSEALSLLRSFPRQSAVSS 1145
            DF+E LS LR    +    S
Sbjct: 410  DFAEILSQLREIGTKKVTKS 429


>ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Citrus sinensis]
          Length = 421

 Score =  475 bits (1222), Expect = e-163
 Identities = 237/380 (62%), Positives = 285/380 (75%)
 Frame = +3

Query: 6    GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
            G++ E +VD+ + K R+D+WI+SRI G+SRAR++SSIRSGLV++NG  V KVSH +K GD
Sbjct: 57   GVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116

Query: 186  KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
             V+C +SELQPLRAE EDIPLDIVYED +VLVVNKPAHMVVHPAPGNA GTLVN +L+HC
Sbjct: 117  MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176

Query: 366  KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
             LP +A +N +   + E               D S  EEF S  + A +RPGIVHRLDKG
Sbjct: 177  SLPTLASSNQEAFSDAE---------------DISDDEEFSSSISGASIRPGIVHRLDKG 221

Query: 546  TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
            TSGLLV+AKDEHSH+HL+EQFK HTI R+YISLTSGVP + SGRIE+PI+RD +NRIRMA
Sbjct: 222  TSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMA 281

Query: 726  AVPVLKNSKHARYAASRYKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDEL 905
            A+P       AR+AASRYKV+EI A GGSALV+WRLETGRTHQIRAHAKY+G+PLLGDE+
Sbjct: 282  AIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEV 341

Query: 906  YGGTKGMAXXXXXXXXXXXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPD 1085
            YGGTK MA                  ++S LQRPCLHA+ LGFTHPHT E ++FSCPPP 
Sbjct: 342  YGGTKNMAKSLLQPRTAPGSHGKVLKLVSGLQRPCLHAVALGFTHPHTREKIQFSCPPPA 401

Query: 1086 DFSEALSLLRSFPRQSAVSS 1145
            DF+E LS LR    +   S+
Sbjct: 402  DFAEILSQLREIGTEKLSSN 421


>ref|XP_008806145.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Phoenix dactylifera]
          Length = 436

 Score =  475 bits (1223), Expect = e-163
 Identities = 245/374 (65%), Positives = 287/374 (76%), Gaps = 3/374 (0%)
 Frame = +3

Query: 6    GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
            GLR E SV+ G+ K R+DSWI+SRIQGVSRARI+SSIRSG V VNG TV KVSH IK GD
Sbjct: 65   GLRLEESVEIGAEKTRLDSWISSRIQGVSRARIQSSIRSGFVVVNGRTVDKVSHIIKGGD 124

Query: 186  KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMV---VHPAPGNANGTLVNAVL 356
             VSC VSELQPLRA+ EDIPLDIVYEDA+VLVVNKPAHM    + P     N T + A  
Sbjct: 125  MVSCTVSELQPLRAKAEDIPLDIVYEDAYVLVVNKPAHMQWISLAPCLSEENYTKLEACF 184

Query: 357  NHCKLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRL 536
            + C+        +  + + + + ESSD+E +++  DQSSVE   SEN++ALVRPGIVHRL
Sbjct: 185  SDCQ------GCSPSTWKCKWHTESSDNEMDNYYFDQSSVEGVSSENSEALVRPGIVHRL 238

Query: 537  DKGTSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRI 716
            DKGTSGLLV+AKDEHSH+HLAEQFK HTIHR+YISLT GVP   SGRIEIPIARDS+NRI
Sbjct: 239  DKGTSGLLVVAKDEHSHAHLAEQFKLHTIHRVYISLTCGVPNPSSGRIEIPIARDSNNRI 298

Query: 717  RMAAVPVLKNSKHARYAASRYKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLG 896
            RMAAV    NS+HARYAASRYKV+++   GGS+LV+WRLETGRTHQIRAHAKYLG+PLLG
Sbjct: 299  RMAAVSGTSNSRHARYAASRYKVIKVLGGGGSSLVEWRLETGRTHQIRAHAKYLGIPLLG 358

Query: 897  DELYGGTKGMAXXXXXXXXXXXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCP 1076
            DE+YGGTK MA                  ++S++QRPCLHA  LGF HPHTGE+L+FSCP
Sbjct: 359  DEVYGGTKSMALSLLRPRTSSSHHGHLSQILSKVQRPCLHASLLGFKHPHTGEHLRFSCP 418

Query: 1077 PPDDFSEALSLLRS 1118
            PPDDF+E L  L+S
Sbjct: 419  PPDDFAEVLDQLQS 432


>ref|XP_010416516.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Camelina
            sativa]
          Length = 431

 Score =  475 bits (1222), Expect = e-163
 Identities = 241/370 (65%), Positives = 280/370 (75%)
 Frame = +3

Query: 6    GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
            GLR E +VDS   K R+DSWI+SR+ GVSRAR++SSIR GLV VNG  + KVSH +K GD
Sbjct: 67   GLRIEETVDSVQGKIRIDSWISSRVIGVSRARVQSSIRLGLVTVNGRVIDKVSHNVKAGD 126

Query: 186  KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
            +V+C +SELQPL+AE EDIPLDIVYED H+LVVNKPAHMVVHPAPGN  GTLVN +L+HC
Sbjct: 127  EVNCTISELQPLKAEAEDIPLDIVYEDKHLLVVNKPAHMVVHPAPGNPTGTLVNGILHHC 186

Query: 366  KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
             LP VA++N           E  DSE+E +  D+   E   S +  A VRPGIVHRLDKG
Sbjct: 187  SLPYVAYSNP----------EEDDSEDEAYSDDE---EMTSSSSYAASVRPGIVHRLDKG 233

Query: 546  TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
            T+GLLV+AKDEHSH+HLAEQFK HTI R+Y+SLT+GVP    GRIEIPI RDSSNRIRMA
Sbjct: 234  TTGLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRDSSNRIRMA 293

Query: 726  AVPVLKNSKHARYAASRYKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDEL 905
            A+P   +   AR+AASRYKV+E FA GGSALV+WRLETGRTHQIRAHAKY+GVPLLGDE+
Sbjct: 294  AIPGGVSGGRARHAASRYKVIETFAGGGSALVEWRLETGRTHQIRAHAKYMGVPLLGDEV 353

Query: 906  YGGTKGMAXXXXXXXXXXXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPD 1085
            YGGTK MA                  +ISRL RPCLHA+ LGFTHP TGE +KFSCPPP 
Sbjct: 354  YGGTKSMALSLLQKRVSRSDQEEIIELISRLDRPCLHAIVLGFTHPCTGEIVKFSCPPPP 413

Query: 1086 DFSEALSLLR 1115
            D +E + LLR
Sbjct: 414  DLAEIVGLLR 423


>ref|XP_008445318.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Cucumis melo]
 ref|XP_008445319.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Cucumis melo]
          Length = 431

 Score =  474 bits (1221), Expect = e-163
 Identities = 237/370 (64%), Positives = 283/370 (76%)
 Frame = +3

Query: 6    GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
            G R E +VD    K R+DSWI+SRI G+SRAR++SSIR+GLV+VNG  + KVSH +K GD
Sbjct: 62   GTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAGD 121

Query: 186  KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
             ++C +SELQPLRAEPEDI LDIVYED HVLVVNKPAHMVVHPAPGNA GTLVNA+LNHC
Sbjct: 122  VINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHC 181

Query: 366  KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
             LPMV       S  T E+   SD  +++F    SS+E F S  ++A +RPGIVHRLDKG
Sbjct: 182  SLPMV-------STSTGEHQSDSDVSDDEF----SSIEVF-SRVSEAPIRPGIVHRLDKG 229

Query: 546  TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
            TSGLLV+AKDEHSH+HL+ QFK+H+I R+YISLT GVP   +GRIEIPI RD +NRIRM 
Sbjct: 230  TSGLLVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMT 289

Query: 726  AVPVLKNSKHARYAASRYKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDEL 905
            A    KN+ HA++AASRY V+EI A GGS+LV+WRLETGRTHQIRAHAKY+G+PLLGDE+
Sbjct: 290  ATHGTKNNPHAKHAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEV 349

Query: 906  YGGTKGMAXXXXXXXXXXXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPD 1085
            YGGTK MA                  ++S L+RPCLHAL LGF HPHTG+ ++FSCPPP 
Sbjct: 350  YGGTKSMAMSLLRTRASSNCHGQLMQLVSSLERPCLHALTLGFVHPHTGKNIRFSCPPPT 409

Query: 1086 DFSEALSLLR 1115
            DF+E LS LR
Sbjct: 410  DFAEILSQLR 419