BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon22_contig00013530
         (1556 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_009368272.2| PREDICTED: uncharacterized protein LOC103957...   325   1e-94
gb|PKU84943.1| Retrovirus-related Pol polyprotein from transposo...   311   1e-93
gb|PKU81153.1| Retrovirus-related Pol polyprotein from transposo...   312   1e-92
gb|PKU63556.1| Retrovirus-related Pol polyprotein from transposo...   303   2e-91
gb|PKU68003.1| Retrovirus-related Pol polyprotein from transposo...   306   4e-91
gb|PNY00673.1| retrovirus-related Pol polyprotein from transposo...   307   8e-91
gb|PKU59636.1| Retrovirus-related Pol polyprotein from transposo...   300   5e-90
gb|PKU87110.1| Retrovirus-related Pol polyprotein from transposo...   308   3e-89
emb|CCH50966.1| T4.5 [Malus x robusta]                                306   5e-88
gb|PRQ31173.1| putative RNA-directed DNA polymerase [Rosa chinen...   305   6e-88
ref|XP_018499249.1| PREDICTED: uncharacterized protein LOC108865...   305   1e-87
gb|PKU62264.1| Retrovirus-related Pol polyprotein from transposo...   301   2e-87
gb|PNX95113.1| copia-type polyprotein [Trifolium pratense]            303   4e-87
emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera]   293   9e-87
gb|PKU70166.1| Retrovirus-related Pol polyprotein from transposo...   299   5e-86
gb|PKU70208.1| Retrovirus-related Pol polyprotein from transposo...   296   2e-85
gb|PRQ35692.1| putative RNA-directed DNA polymerase [Rosa chinen...   290   3e-83
gb|PKU77435.1| Retrovirus-related Pol polyprotein from transposo...   277   2e-81
gb|PNX72737.1| retrovirus-related Pol polyprotein from transposo...   279   2e-80
gb|PKU78648.1| Retrovirus-related Pol polyprotein from transposo...   280   3e-79

>ref|XP_009368272.2| PREDICTED: uncharacterized protein LOC103957781 [Pyrus x
            bretschneideri]
          Length = 1880

 Score =  325 bits (834), Expect = 1e-94
 Identities = 204/492 (41%), Positives = 268/492 (54%), Gaps = 5/492 (1%)
 Frame = -3

Query: 1554 KSPYKILFPKISDYQFLRVFGALCFPWLRPYS-HKLEPRSR-CVFQDYCARSKGYRCLDP 1381
            KSPY+ LF +   Y F +VFG  CFPWLRPY+ HKLE +S+ CVF  Y    +GY+CLD 
Sbjct: 94   KSPYEKLFTRTPKYDFFKVFGCRCFPWLRPYTQHKLEAKSKSCVFLGYSLDHQGYKCLDV 153

Query: 1380 STGTMFISRHVRFFEDIFPFSFDLQAAKSYHSNTKHSPYXXXXXXXXXXXXXXXXXXXXX 1201
            ST  +++SRHV F ED FPF       +S H+ T  SP                      
Sbjct: 154  STRRVYLSRHVLFDEDSFPFKDITLQKESVHA-TGSSPSSDLLFVF-------------- 198

Query: 1200 XXXXXXXXXXXXXXXXXXTQQPRSQRSITTTIPTSDSVPAMLILRNHSVTPIDLSPLGSV 1021
                                 P    S +  I +  +  A L+  +   T I  S     
Sbjct: 199  ---------------------PSLSPSHSPVIASPST--AQLLSHDPPSTNITSSVDSIA 235

Query: 1020 APSGPLLINP--APVHPPTINHPLCNENPVDPTPSQPAPTADSSLVAPSHHIATRSKVGI 847
             PS P ++NP   P+  P       NE  +   P Q      S    P HH+ TRSK GI
Sbjct: 236  NPSVPPVLNPDIVPLEMP-------NEQEIISEPEQQPDL--SCAPNPVHHMQTRSKAGI 286

Query: 846  HKSKHPICLTTVSTTINVEPTCFKEANRHIECRRAMSDEFQALQRQETWCLVPPPPFANI 667
             K      L  V+T   VEPT F +A +  E R AM  EF ALQR  TW LVP  P  N+
Sbjct: 287  QKPNPKYALHVVTTDTPVEPTSFSQAVKQQEWRNAMVTEFNALQRSGTWNLVPYKPHMNL 346

Query: 666  IGCKLVFKLKRHPDDTIARYKARLVAKYFHQQEGVNFQETFSPVVKMATVRVVISLALHY 487
            +  K V+K+KRH + +I RYKARLVA  FHQQ GV++ ETFSPVVK +T+R+V+SLA+  
Sbjct: 347  LPNKWVYKIKRHANGSIDRYKARLVANGFHQQHGVDYGETFSPVVKHSTIRLVLSLAVSN 406

Query: 486  AWNIRQLDVSNAFLHGFISETIYIQQPPGFIDSSQSGYVCRLRKALYGLRQAPCA*FDCL 307
             W +RQLDV NAFLHG+++E +Y++QP GF+DS    +VCRL+++LYGL+QAP A F   
Sbjct: 407  QWPVRQLDVQNAFLHGYLAEEVYMRQPVGFVDSQYPHHVCRLQRSLYGLKQAPRAWFQRF 466

Query: 306  STYLLHLGFLMSKDDDSLFVQKDSCRLTILLVYV-DILITGSDPTYITHFLSKMKSQFEA 130
            S +LLHLGF  SK D SLFV K      +LL+YV DIL+TG+ P  +   + K+++ F  
Sbjct: 467  SDFLLHLGFQESKCDYSLFVFKQQGVYLLLLIYVDDILLTGNHPQQMHRLIQKLRTLFSM 526

Query: 129  RILVKFIIFLAL 94
            + L     FL +
Sbjct: 527  KDLGPLHYFLGV 538


>gb|PKU84943.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 805

 Score =  311 bits (798), Expect = 1e-93
 Identities = 195/490 (39%), Positives = 256/490 (52%), Gaps = 3/490 (0%)
 Frame = -3

Query: 1551 SPYKILFPKISDYQFLRVFGALCFPWLRPY-SHKLEPRSR-CVFQDYCARSKGYRCLDPS 1378
            SPY IL+ + + Y  L++FG LC+PWLRPY + KL P S  C+   Y +  KGY+CLDP 
Sbjct: 115  SPYHILYHQPAKYNHLKIFGCLCYPWLRPYHTTKLSPLSTPCILTGYASAQKGYKCLDPQ 174

Query: 1377 TGTMFISRHVRFFEDIFPFSFDLQAAKSYHSNTKHSPYXXXXXXXXXXXXXXXXXXXXXX 1198
            TG  +ISRHV F E+IFP+S  L    S  +   + P                       
Sbjct: 175  TGRTYISRHVIFNENIFPYS-QLTMQDSSQTQLPNIP----------------------- 210

Query: 1197 XXXXXXXXXXXXXXXXXTQQPRSQRSITTTIPTSDSVPAMLILRNHSVTPIDLSPLGSVA 1018
                                P S  ++   IP++   P                      
Sbjct: 211  ---------------PLLMVPISSSNVNVPIPSTKQTP---------------------P 234

Query: 1017 PSGPLLINPAPVHPPTINHPLCNENPVDPTPSQPAPTADSSLVAPSHHIATRSKVGIHKS 838
            P  P  I P     PT N    N+      P+Q A T  +S     H + TRSK GI KS
Sbjct: 235  PDVPSRITPI---APTPNTDSVNQ------PTQLATTTTAS---TGHPMVTRSKSGIIKS 282

Query: 837  KHPICLTTVSTTINVEPTCFKEANRHIECRRAMSDEFQALQRQETWCLVPPPPFANIIGC 658
            KH      + T    +PT + EA RH   R AMS EFQALQ Q TW LVPP P  N++GC
Sbjct: 283  KH--IFNLLHTHTKPDPTSYTEAARHEHWRTAMSQEFQALQSQGTWDLVPPDPQQNVLGC 340

Query: 657  KLVFKLKRHPDDTIARYKARLVAKYFHQQEGVNFQETFSPVVKMATVRVVISLALHYAWN 478
            K  F+ K   D +IARYKARLVAK F Q+ G+++QETFSPV K+ T+R+++ LAL +AW 
Sbjct: 341  KWTFRTKYRADGSIARYKARLVAKGFDQEYGIDYQETFSPVAKIPTIRILLILALQHAWP 400

Query: 477  IRQLDVSNAFLHGFISETIYIQQPPGFIDSSQSGYVCRLRKALYGLRQAPCA*FDCLSTY 298
            I QLDVSNAFLHG +  T+Y+ QPPGF+D+ Q  YVC+L+KALY L+Q+P   F  LS Y
Sbjct: 401  IHQLDVSNAFLHGQLHHTVYMTQPPGFVDNLQPNYVCQLKKALYRLKQSPREWFSTLSGY 460

Query: 297  LLHLGFLMSKDDDSLFV-QKDSCRLTILLVYVDILITGSDPTYITHFLSKMKSQFEARIL 121
            L  LGF  S  D SL +  K+  R+  L+   DIL+TG+    I   L  + S+F  + L
Sbjct: 461  LHTLGFQFSTSDSSLLIYNKNGTRMYFLVYVDDILLTGNCQQAIKQLLQTLNSRFTMKDL 520

Query: 120  VKFIIFLALR 91
             +   FL ++
Sbjct: 521  GQLSQFLGIQ 530


>gb|PKU81153.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 946

 Score =  312 bits (799), Expect = 1e-92
 Identities = 195/493 (39%), Positives = 268/493 (54%), Gaps = 4/493 (0%)
 Frame = -3

Query: 1554 KSPYKILFPKISDYQFLRVFGALCFPWLRPYS-HKLEPRSR-CVFQDYCARSKGYRCLDP 1381
            KSP+++L+ K  +Y  L+VFG+LC+PWL+PYS +KL P S  C+F  Y    KGYRCLDP
Sbjct: 242  KSPHELLYQKPPNYSNLKVFGSLCYPWLKPYSSNKLSPLSYPCIFIGYAPFQKGYRCLDP 301

Query: 1380 STGTMFISRHVRFFEDIFPFSFDLQAAKSYHSNTKHSPYXXXXXXXXXXXXXXXXXXXXX 1201
                ++ SRHV F E  FPF      +++  +N+ H+P                      
Sbjct: 302  KNNKVYTSRHVVFNEHQFPFKH--LNSQNSSTNSYHNP---------------------- 337

Query: 1200 XXXXXXXXXXXXXXXXXXTQQPRSQRSITTTIPTSDSVPAMLILRNHSVTP-IDLSPLGS 1024
                                 P      TT +PT+         +N +  P I LSP  +
Sbjct: 338  --------------------PPPLLLVPTTNLPTAILNTTTKEFQNTTSQPSIPLSPHSN 377

Query: 1023 VAPSGPLLINPAPVHPPTINHPLCNENPVDPTPSQPAPTADSSLVAPSHHIATRSKVGIH 844
                    ++ +  H P   + + N    +P  S             SHH+ATRSK G  
Sbjct: 378  TQSQD---VSVSQQHSPIPPNVVINNTISNPHHS-------------SHHMATRSKTGHS 421

Query: 843  KSKHPICLTTVSTTINVEPTCFKEANRHIECRRAMSDEFQALQRQETWCLVPPPPFANII 664
            K K    L+ V    + EPT + +A++    R AMS EFQALQ Q TW LVPP P  N++
Sbjct: 422  KPKKIFDLSHVIH--DAEPTTYNQASKSEHWRAAMSQEFQALQVQGTWDLVPPNPAQNVL 479

Query: 663  GCKLVFKLKRHPDDTIARYKARLVAKYFHQQEGVNFQETFSPVVKMATVRVVISLALHYA 484
            GCK  F+ K + D TIARYKARLVAK F+Q+ G+++ ETFSPV K+ TVRV+I +ALH+ 
Sbjct: 480  GCKWTFRTKLNSDGTIARYKARLVAKGFNQEHGLDYTETFSPVAKIPTVRVLILIALHFN 539

Query: 483  WNIRQLDVSNAFLHGFISETIYIQQPPGFIDSSQSGYVCRLRKALYGLRQAPCA*FDCLS 304
            W+I QLDVSNAFLHG +SET+++QQPPGF D     +VC+L KALYGL+Q+P   +  LS
Sbjct: 540  WDIHQLDVSNAFLHGKLSETVFMQQPPGFQDVVHPTFVCKLNKALYGLKQSPREWYATLS 599

Query: 303  TYLLHLGFLMSKDDDSLFVQKDSCRLTILLVYV-DILITGSDPTYITHFLSKMKSQFEAR 127
             +LL+ GF +S  D SLF  K       +L+YV DIL+TG+    I   L+ +  QF+ R
Sbjct: 600  HHLLNFGFKISNADPSLFTYKSGSNQLYILIYVDDILLTGNSKLEINRLLTSLHEQFQMR 659

Query: 126  ILVKFIIFLALRS 88
             L     FL +++
Sbjct: 660  NLGSLANFLGIQT 672


>gb|PKU63556.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 715

 Score =  303 bits (777), Expect = 2e-91
 Identities = 195/493 (39%), Positives = 257/493 (52%), Gaps = 3/493 (0%)
 Frame = -3

Query: 1554 KSPYKILFPKISDYQFLRVFGALCFPWLRPY-SHKLEPRSR-CVFQDYCARSKGYRCLDP 1381
            KSP++IL  +   Y  L+V G LC+PWL+PY SHKL P S  CVF +Y    KGY+CLD 
Sbjct: 171  KSPFEILHGQPPRYDHLKVLGCLCYPWLKPYTSHKLSPTSHPCVFIEYAHSQKGYKCLDI 230

Query: 1380 STGTMFISRHVRFFEDIFPFSFDLQAAKSYHSNTKHSPYXXXXXXXXXXXXXXXXXXXXX 1201
             T  ++ SR+V F E+ FP+S   ++   Y S+    P                      
Sbjct: 231  HTHKIYTSRNVIFNENEFPYS---KSPTHYWSSNPTPPLILVPNLSILPQQSSSPHL--- 284

Query: 1200 XXXXXXXXXXXXXXXXXXTQQPRSQRSITTTIPTSDSVPAMLILRNHSVTPIDLSPLGSV 1021
                                   SQ  IT  +  S + P+      H  TP    P  S 
Sbjct: 285  ----------------------TSQAVITPALANSSTHPSYSTTTTH--TP---EPTTST 317

Query: 1020 APSGPLLINPAPVHPPTINHPLCNENPVDPTPSQPAPTADSSLVAPSHHIATRSKVGIHK 841
             P    +        PT          V P   Q  PT         HH+ TR K GI K
Sbjct: 318  TPYSESI-------QPT----------VTPNLHQSKPT---------HHMLTRLKTGISK 351

Query: 840  SKHPICLTTVSTTINVEPTCFKEANRHIECRRAMSDEFQALQRQETWCLVPPPPFANIIG 661
             K    L  +  T   EP  + +A +    R AMS EFQALQ Q TW LVPP P  NI+G
Sbjct: 352  PKKIFDLAHIVQT--PEPNTYNQAAKFEHWRSAMSQEFQALQAQGTWELVPPQPSMNILG 409

Query: 660  CKLVFKLKRHPDDTIARYKARLVAKYFHQQEGVNFQETFSPVVKMATVRVVISLALHYAW 481
             K  F+ K + D TIAR+KARLVAK F+Q++G+++ ETFSPV KM T+RV+I LALH+ W
Sbjct: 410  SKWTFRTKYNSDGTIARHKARLVAKGFNQEQGIDYHETFSPVAKMPTIRVLIILALHHNW 469

Query: 480  NIRQLDVSNAFLHGFISETIYIQQPPGFIDSSQSGYVCRLRKALYGLRQAPCA*FDCLST 301
             I QLDVSNAFLHG +S+T+Y+ QPPGF DS   GYVC+L+KALYGL+Q+P   +  LS 
Sbjct: 470  TIHQLDVSNAFLHGNLSDTVYMSQPPGFQDSMHPGYVCKLKKALYGLKQSPREWYATLSN 529

Query: 300  YLLHLGFLMSKDDDSLFVQKDSCRLTILLVYV-DILITGSDPTYITHFLSKMKSQFEARI 124
            +LL+ GF +S  D SL   K       +L+YV DIL+ G+ P+ I   L+ + S F+ R 
Sbjct: 530  HLLNYGFKISPSDHSLLTYKSGATRIYMLIYVDDILLAGNSPSEINKLLANLHSTFQMRN 589

Query: 123  LVKFIIFLALRSL 85
            L     FL ++++
Sbjct: 590  LGPLSQFLGIQAI 602


>gb|PKU68003.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 878

 Score =  306 bits (785), Expect = 4e-91
 Identities = 189/494 (38%), Positives = 267/494 (54%), Gaps = 4/494 (0%)
 Frame = -3

Query: 1554 KSPYKILFPKISDYQFLRVFGALCFPWLRPY-SHKLEPRSR-CVFQDYCARSKGYRCLDP 1381
            KSPY++L  K  DY  L+V G LC+PWL+PY SHKL P S  C+F  Y    KGY+CLD 
Sbjct: 171  KSPYELLHNKQPDYNHLKVLGCLCYPWLKPYTSHKLSPLSHPCIFIGYPLNQKGYKCLDL 230

Query: 1380 STGTMFISRHVRFFEDIFPFSFDLQAAKSYHSNTKHSPYXXXXXXXXXXXXXXXXXXXXX 1201
             +  ++IS +V F E IFP+S   Q+A+     T+H                        
Sbjct: 231  RSNKIYISSNVIFNETIFPYSD--QSAQDAQHKTQHPSI--------------------- 267

Query: 1200 XXXXXXXXXXXXXXXXXXTQQPRSQRSITTTIPTSDSVPAMLILRNHSVTPIDLSPLGSV 1021
                                 P        ++P + +  ++ IL +H      ++P  S 
Sbjct: 268  ---------------------PPLLLVPNISLPQTLAPESLHILPHH------INPPQST 300

Query: 1020 APSGPLLINPAPVHPPTINHPLCNENP-VDPTPSQPAPTADSSLVAPSHHIATRSKVGIH 844
            + S   + +P       I+    +  P + P P  P P +      P+H + TR K GI 
Sbjct: 301  SISTSTVQSPTSHQHTNISSTSLHNTPHIQPVPELPHPPSQ-----PTHTMLTRLKTGIS 355

Query: 843  KSKHPICLTTVSTTINVEPTCFKEANRHIECRRAMSDEFQALQRQETWCLVPPPPFANII 664
            K K    LT +      EPT + +A +H   RRAMS EFQALQ Q TW LVPP    NI+
Sbjct: 356  KPKKIFDLTHIIQP--AEPTTYNQAVKHEHWRRAMSQEFQALQAQGTWELVPPNSAMNIL 413

Query: 663  GCKLVFKLKRHPDDTIARYKARLVAKYFHQQEGVNFQETFSPVVKMATVRVVISLALHYA 484
            G K  F+ K + D +IAR+KARLVAK FHQ+ G+++ ETFSPV KM T+RV+I +ALH+ 
Sbjct: 414  GSKWTFRTKYNSDGSIARHKARLVAKGFHQEYGIDYTETFSPVAKMPTIRVLILIALHHN 473

Query: 483  WNIRQLDVSNAFLHGFISETIYIQQPPGFIDSSQSGYVCRLRKALYGLRQAPCA*FDCLS 304
            W I QLDVSNAFLHG +S+T+Y+ QPPGF DS+   ++C+L+KALYGL+Q+P   +  LS
Sbjct: 474  WTIHQLDVSNAFLHGKLSDTVYMSQPPGFQDSTHPTHICKLKKALYGLKQSPRVWYATLS 533

Query: 303  TYLLHLGFLMSKDDDSLFVQKD-SCRLTILLVYVDILITGSDPTYITHFLSKMKSQFEAR 127
             +L+  GF +S  D SLF  K  S RL +L+   DIL+TG+    +   L+ + + F+ +
Sbjct: 534  NHLIDYGFKISASDPSLFTYKSGSIRLYMLIYVDDILLTGNSTPELHKLLTNLHASFQMK 593

Query: 126  ILVKFIIFLALRSL 85
             L     FL + ++
Sbjct: 594  NLGNLSQFLGIHTI 607


>gb|PNY00673.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 933

 Score =  307 bits (786), Expect = 8e-91
 Identities = 179/478 (37%), Positives = 258/478 (53%), Gaps = 3/478 (0%)
 Frame = -3

Query: 1551 SPYKILFPKISDYQFLRVFGALCFPWLRPYSH-KLEPRSR-CVFQDYCARSKGYRCLDPS 1378
            +PY ILF    +Y  L+ FG LCFPWL+PY+H KLEPRS  C+F  Y      Y C +  
Sbjct: 215  TPYHILFNHPPNYTKLKTFGCLCFPWLKPYTHNKLEPRSEPCIFLGYSLTQSAYICYNFK 274

Query: 1377 TGTMFISRHVRFFEDIFPFSFDLQAAKSYHSNTKHSPYXXXXXXXXXXXXXXXXXXXXXX 1198
            T   +ISRHV+F E+IFPFS          +NT                           
Sbjct: 275  THKTYISRHVQFVENIFPFS---------QNNT--------------------------- 298

Query: 1197 XXXXXXXXXXXXXXXXXTQQPRSQRSITTTIPTSDSVPAMLILRNHSVTPIDLSPLGSVA 1018
                              + P +  S++++IP S       IL     TP   +P     
Sbjct: 299  --------VVPSSTIIPLESPPTNTSLSSSIPVSQP-----ILPTQPNTP---NPTTDTQ 342

Query: 1017 PSGPLLINPAPVHPPTINHPLCNENPVDPTPSQPAPTADSSLVAPSHHIATRSKVGIHKS 838
            P  P +       PP+ + P    + V      P PT   S     H +ATRSK GI K 
Sbjct: 343  PPYPNISETLVTEPPSHSTPEHTLSTVQSVVEVPPPTPRPS----GHSMATRSKNGIFKP 398

Query: 837  KHPICLTTVSTTINVEPTCFKEANRHIECRRAMSDEFQALQRQETWCLVPPPPFANIIGC 658
            K     T      + EPTC  +A +H E ++AMSDEF AL    TW LVP  P  N+IG 
Sbjct: 399  KKLFLATKYPLPPSTEPTCVSQALQHAEWKQAMSDEFTALMNNGTWSLVPHHPHLNVIGN 458

Query: 657  KLVFKLKRHPDDTIARYKARLVAKYFHQQEGVNFQETFSPVVKMATVRVVISLALHYAWN 478
            K VF++KR+PD +IARYKARLVAK FHQ+ G+++++TFSPV+K  T+++V+ ++L   W+
Sbjct: 459  KWVFRIKRNPDGSIARYKARLVAKGFHQRPGIDYKDTFSPVIKPQTIKMVLCISLSKGWD 518

Query: 477  IRQLDVSNAFLHGFISETIYIQQPPGFIDSSQSGYVCRLRKALYGLRQAPCA*FDCLSTY 298
            + Q+DV+NAFL+G ++E +Y+ QPPGF+ SS   +VC+L K+LYGL+QAP A ++ L ++
Sbjct: 519  LMQMDVNNAFLNGTLNEEVYMSQPPGFVHSSYPNHVCKLHKSLYGLKQAPRAWYNALHSF 578

Query: 297  LLHLGFLMSKDDDSLFVQKDSCRLTILLVYV-DILITGSDPTYITHFLSKMKSQFEAR 127
            ++  GF  SK D SLF+      +   LVYV D+L+TG+  +++  F + + ++F  +
Sbjct: 579  VVTYGFFKSKSDPSLFIYHKDGIMAYFLVYVDDLLLTGNSSSFLKDFKTTLAAKFSLK 636


>gb|PKU59636.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 708

 Score =  300 bits (767), Expect = 5e-90
 Identities = 187/487 (38%), Positives = 252/487 (51%), Gaps = 3/487 (0%)
 Frame = -3

Query: 1515 YQFLRVFGALCFPWLRPYS-HKLEPRSR-CVFQDYCARSKGYRCLDPSTGTMFISRHVRF 1342
            Y  LR FG LC+PWLRPY+  K  PRS  CVF  Y    KGY+C +P+TG   ISRHV F
Sbjct: 23   YTQLRTFGCLCYPWLRPYAPDKFSPRSHACVFIGYSPLHKGYKCYNPTTGKTPISRHVVF 82

Query: 1341 FEDIFPFSFDLQAAKSYHSNTKHSPYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1162
            +E  FP+        S   NT   P                                   
Sbjct: 83   YEHQFPYK-----QASLTDNTHAQP----------------------------------- 102

Query: 1161 XXXXXTQQPRSQRSITTTIPTSDSVPAMLILRNHSVTPIDLSPLGSVAPSGPLLINPAPV 982
                    P      T  IPTS        L N S        +  +AP+        P 
Sbjct: 103  --------PIDHIPPTLLIPTS-------ALSNSSAPTTHPQIIQHIAPAN------IPS 141

Query: 981  HPPTINHPLCNENPVDPTPSQPAPTADSSLVAPSHHIATRSKVGIHKSKHPICLTTVSTT 802
             PP I+HP  N +P+   P    P   +S   P HH+ TRSK GIHK K  + L T  TT
Sbjct: 142  PPPNISHPDFNTDPLPDIP----PQIHTSQGPPVHHMQTRSKSGIHKPKQVLNLLT-HTT 196

Query: 801  INVEPTCFKEANRHIECRRAMSDEFQALQRQETWCLVPPPPFANIIGCKLVFKLKRHPDD 622
                PT + +A +    R+AM  EF AL++Q TW LV PP   +++GCK  +K K  P+ 
Sbjct: 197  SPSTPTTYNQAAKSEHWRQAMITEFNALRQQATWTLVEPPANKSVLGCKWTYKTKFLPNG 256

Query: 621  TIARYKARLVAKYFHQQEGVNFQETFSPVVKMATVRVVISLALHYAWNIRQLDVSNAFLH 442
             I RYKARLVA  + Q+ G+N+ ETFSPV KM T+R++++LALH  W + QLD+SNAFLH
Sbjct: 257  QIDRYKARLVALGYDQKFGINYTETFSPVAKMPTIRLLLTLALHRQWPMYQLDISNAFLH 316

Query: 441  GFISETIYIQQPPGFIDSSQSGYVCRLRKALYGLRQAPCA*FDCLSTYLLHLGFLMSKDD 262
            G + + IY++QPPGFID      VC+LRK+LYGL+QAP   F  L+++L   GF  S+ D
Sbjct: 317  GDLPDDIYMRQPPGFIDQHLPNAVCKLRKSLYGLKQAPRQWFQKLTSFLQSKGFTFSRAD 376

Query: 261  DSLFVQKDSCRLTILLVYV-DILITGSDPTYITHFLSKMKSQFEARILVKFIIFLALRSL 85
             SL +   +     +L+YV D L+TG+DP  I + L +++SQF  + L    +FL ++ +
Sbjct: 377  PSLLILDTTSTQLFILIYVDDFLVTGNDPVAIQNLLQQLQSQFALKQLGNISLFLGIQVI 436

Query: 84   LIPRAYY 64
                 Y+
Sbjct: 437  QSTSGYF 443


>gb|PKU87110.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 1345

 Score =  308 bits (789), Expect = 3e-89
 Identities = 192/497 (38%), Positives = 267/497 (53%), Gaps = 4/497 (0%)
 Frame = -3

Query: 1554 KSPYKILFPKISDYQFLRVFGALCFPWLRPY-SHKLEPRS-RCVFQDYCARSKGYRCLDP 1381
            KSPY++LF K   Y+ LR+FG LC+PWL+PY S+KL P S  CVF  Y +  KGYRCLD 
Sbjct: 643  KSPYELLFGKTPSYERLRIFGCLCYPWLKPYSSNKLAPLSIPCVFIGYASAQKGYRCLDL 702

Query: 1380 STGTMFISRHVRFFEDIFPFSFDLQAAKSYHSNTKHSPYXXXXXXXXXXXXXXXXXXXXX 1201
             T  ++ S HV F E +FP++       +Y S+                           
Sbjct: 703  KTNRIYTSCHVIFNESVFPYA-------TYQSS--------------------------- 728

Query: 1200 XXXXXXXXXXXXXXXXXXTQQPRSQRSITTTIPTSDSVPAMLILRNHSVTPIDLSPLGSV 1021
                                QP        T P    VP       H++      PL SV
Sbjct: 729  --------------------QPTPLSITPNTTPPLLLVP------THNLPNSITKPLPSV 762

Query: 1020 APSGPLLINP-APVHPPTINHPLCNENPVDPTPSQPAPTADSSLVAPSHHIATRSKVGIH 844
              + P      A   PP +  P  N++  + T +    + +     PSH + TR K G  
Sbjct: 763  KNNSPSQDQSIAVTAPPRLTTP--NQSSANTTQNTINSSVNLGNSHPSHRMITRFKSGKI 820

Query: 843  KSKHPICLTTVSTTINVEPTCFKEANRHIECRRAMSDEFQALQRQETWCLVPPPPFANII 664
              KH   LT +    + +PT + +AN+    R AMS EFQALQ Q TW LV P    N++
Sbjct: 821  TPKHIFDLTHI--IHSPDPTTYHQANKSQHWRTAMSQEFQALQSQGTWDLVAPEDAQNVL 878

Query: 663  GCKLVFKLKRHPDDTIARYKARLVAKYFHQQEGVNFQETFSPVVKMATVRVVISLALHYA 484
            GCK  F+ K + D ++AR+KARLVAK F+Q++G+++ ETFSPV KM T+RV+I LAL++ 
Sbjct: 879  GCKWTFRTKFNSDGSVARHKARLVAKGFNQEQGLDYTETFSPVAKMPTIRVLILLALYHD 938

Query: 483  WNIRQLDVSNAFLHGFISETIYIQQPPGFIDSSQSGYVCRLRKALYGLRQAPCA*FDCLS 304
            W I QLDVSNAFLHG +++T+Y+QQPPGF DS    YVC+L+KALYGL+Q+P   +  LS
Sbjct: 939  WTIHQLDVSNAFLHGNLTDTVYMQQPPGFQDSIHPNYVCKLKKALYGLKQSPREWYATLS 998

Query: 303  TYLLHLGFLMSKDDDSLFV-QKDSCRLTILLVYVDILITGSDPTYITHFLSKMKSQFEAR 127
            T+L   GF +S  D SL +   D  ++ IL+   DIL+TG+ PT I   L+ + S+F+ R
Sbjct: 999  THLQDFGFKISTADHSLLIYNADKIQMYILIYVDDILLTGNSPTEINRLLANLNSRFQMR 1058

Query: 126  ILVKFIIFLALRSLLIP 76
             L     FL ++++  P
Sbjct: 1059 NLGPLSQFLGIQAIRTP 1075


>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score =  306 bits (784), Expect = 5e-88
 Identities = 198/517 (38%), Positives = 273/517 (52%), Gaps = 21/517 (4%)
 Frame = -3

Query: 1551 SPYKILFPKISDYQFLRVFGALCFPWLRPYSH-KLEPRSR-CVFQDYCARSKGYRCLDPS 1378
            SP+++LF     Y  L+ FG  C+PWL+PYS  KL+ +S+ CVF  Y     GYRC DP 
Sbjct: 940  SPWELLFHASPKYHTLKAFGCACYPWLQPYSRDKLDFKSKQCVFLGYSLNHSGYRCWDPI 999

Query: 1377 TGTMFISRHVRFFEDIFPFSFDLQAAKSYHSNTKHSPYXXXXXXXXXXXXXXXXXXXXXX 1198
            +  ++ISRHV F E +FP+   L +  S+HS    SP                       
Sbjct: 1000 SNRLYISRHVVFDESLFPYK-SLSSQASHHSPCVSSPL---------------------- 1036

Query: 1197 XXXXXXXXXXXXXXXXXTQQPRSQRSITTTIPTS-----DSVPAMLILRNHSVTPIDLSP 1033
                                     S+   +P S      S  A L  RN S   I  + 
Sbjct: 1037 ---------------------HPPMSLHLPLPVSHLEQQSSPAAALEGRNASPPSIFSTA 1075

Query: 1032 LGSVAPSGPLLINPAPVHPPTINHPLCNENPVDPTPSQPAPTADSSLVAPSHHIATRSKV 853
              +  PS         +H P +     + +P +P P  P       +   +H + TR+K 
Sbjct: 1076 AHTTIPSSA----QESLHTPPV-----SSSPAEPPPLPP------PIPVNTHTMITRAKA 1120

Query: 852  GIHK------SKHPICLTTVS-TTINVEPTCFKEANRHIECRRAMSDEFQALQRQETWCL 694
            GIHK      +KH +  T  S T +   P+ F +A++      AM  EFQALQ   TW L
Sbjct: 1121 GIHKPKVFTATKHQLPSTVDSLTALPPTPSTFLQASKSSHWMEAMQFEFQALQSTGTWEL 1180

Query: 693  VPPPPFANIIGCKLVFKLKRHPDDTIARYKARLVAKYFHQQEGVNFQETFSPVVKMATVR 514
            VP     NI+GCK VFK+K  PD TI RYKARLVAK FHQQEG++F ETFSPV K  T+R
Sbjct: 1181 VPNHSTYNIVGCKWVFKVKHKPDGTIERYKARLVAKGFHQQEGLDFSETFSPVAKPTTIR 1240

Query: 513  VVISLALHYAWNIRQLDVSNAFLHGFISETIYIQQPPGFIDSSQSGYVCRLRKALYGLRQ 334
            +++S+A+ Y W I QLDVSNAFLHG + E +Y+ QPPGF+D S+  +VC+LRK+LYGL+Q
Sbjct: 1241 ILLSIAVSYYWFIHQLDVSNAFLHGHLKEDVYMVQPPGFVDPSKPHHVCKLRKSLYGLKQ 1300

Query: 333  APCA*FDCLSTYLLHLGFLMSKDDDSLFVQKDSCRLTILLVYV-DILITGSDPTYITHFL 157
            AP A ++   T +L LGF  S  D SLF+++D+  +T +LVYV DI+ITGS  T     +
Sbjct: 1301 APRAWYEAFYTAILSLGFSSSHSDTSLFIKRDT-SITFILVYVDDIIITGSSVTECQSII 1359

Query: 156  SKMKSQFEARILVKFIIFLAL------RSLLIPRAYY 64
            S++++ F  + L     FL +      + LL+ +A Y
Sbjct: 1360 SQLQTMFPVKDLGDINYFLGIEVHKSDQGLLLHQAKY 1396


>gb|PRQ31173.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1468

 Score =  305 bits (782), Expect = 6e-88
 Identities = 187/513 (36%), Positives = 266/513 (51%), Gaps = 26/513 (5%)
 Frame = -3

Query: 1551 SPYKILFPKISDYQFLRVFGALCFPWLRPY-SHKLEPRS-RCVFQDYCARSKGYRCLDPS 1378
            +P++ L+     Y  LRVFG  CFP L PY S KL  RS  CVF  Y  + KGYRCLDP 
Sbjct: 673  TPHRRLYGTPPSYSSLRVFGCSCFPHLGPYVSDKLSSRSLECVFLGYSPKHKGYRCLDPK 732

Query: 1377 TGTMFISRHVRFFEDIFPFSF----DLQAAKSYHS---------NTKHSPYXXXXXXXXX 1237
            +G +++SRHV F E  FP+       +Q +K+            +  H P          
Sbjct: 733  SGRVYVSRHVLFDETSFPYRKLQDPSVQVSKALELTQLTGPVLIHDAHLPSGPNARPTSS 792

Query: 1236 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQQPRSQRSITTTIPTSDSVPAMLILRNHS 1057
                                           ++PR   ++    P S SVPA       S
Sbjct: 793  VQHQSTNSLASDLVAPPPSNPPLSPPVITYHRRPRPPSAVPAPSPPSSSVPAP------S 846

Query: 1056 VTPIDLSPLGSVAPSGPLLINPAPVHPPTINHPLCNEN--PVDPTPSQPAPTADSSLVAP 883
            + P       S  P+   +  P P++  T +      +  P D    + +    +++  P
Sbjct: 847  LPP-------SAVPAAHGITGP-PINTTTTSSATVAPDRLPTDGPALRSSSPPPATISPP 898

Query: 882  SHHIATRSKVGIHKSK--------HPICLTTVSTTINVEPTCFKEANRHIECRRAMSDEF 727
             H + TR + G  K +        +PI    ++   +VEPTC+ +A++  E R AM DE 
Sbjct: 899  RHQMVTRLQDGTQKPRIPSDGTVRYPIPRALLTMVDSVEPTCYSQASKKAEWRAAMVDEI 958

Query: 726  QALQRQETWCLVPPPPFANIIGCKLVFKLKRHPDDTIARYKARLVAKYFHQQEGVNFQET 547
             AL +  TW LVP  P  N +GCK VFK+KR+PD ++ R+KARLVAK FHQQ+G++F ET
Sbjct: 959  NALMKNNTWSLVPSSPTQNTVGCKWVFKVKRNPDGSVERFKARLVAKGFHQQQGIDFHET 1018

Query: 546  FSPVVKMATVRVVISLALHYAWNIRQLDVSNAFLHGFISETIYIQQPPGFIDSSQSGYVC 367
            FSPV+K AT+R VISLA+   W++RQLDV NAFLHGF++E +Y+ QPPGFID S   +VC
Sbjct: 1019 FSPVIKPATIRTVISLAVSRGWSLRQLDVKNAFLHGFLTEDVYMTQPPGFIDQSHPTHVC 1078

Query: 366  RLRKALYGLRQAPCA*FDCLSTYLLHLGFLMSKDDDSLFVQKDSCRLTILLVYV-DILIT 190
            +L K+LYGL+QAP A F  ++++LL +GF  S  D SLF+          L+YV DI++T
Sbjct: 1079 KLNKSLYGLKQAPRAWFQRMTSFLLSIGFTQSLADSSLFIFAHGPHTIYFLLYVDDIVVT 1138

Query: 189  GSDPTYITHFLSKMKSQFEARILVKFIIFLALR 91
             S    +  F+  +   F+ + L     FL L+
Sbjct: 1139 SSHDRLLQSFIDALSRGFDIKDLGPLHYFLGLQ 1171


>ref|XP_018499249.1| PREDICTED: uncharacterized protein LOC108865949 [Pyrus x
            bretschneideri]
          Length = 1610

 Score =  305 bits (781), Expect = 1e-87
 Identities = 196/499 (39%), Positives = 269/499 (53%), Gaps = 13/499 (2%)
 Frame = -3

Query: 1551 SPYKILFPKISDYQFLRVFGALCFPWLRPYSH-KLEPRSR-CVFQDYCARSKGYRCLDPS 1378
            SP+++LF     Y  L+ FG  C+PWL+PYS  KL+ +S+ CVF  Y     GYRC DP 
Sbjct: 879  SPWELLFHASPKYHTLKTFGCACYPWLQPYSRDKLDFKSKQCVFPGYSLNHSGYRCWDPI 938

Query: 1377 TGTMFISRHVRFFEDIFPFSF-DLQAAKSYHSNTKHSPYXXXXXXXXXXXXXXXXXXXXX 1201
            +  ++ISRHV F E  FP+ F   QA+        HSP                      
Sbjct: 939  SNRLYISRHVVFDESCFPYKFLSSQASSPDPCVPPHSP---------------------- 976

Query: 1200 XXXXXXXXXXXXXXXXXXTQQPRSQRSITTTIPTSDSV--PAMLILRNHSVTPIDLSPLG 1027
                                   +  S+   +P S  V  P++      S  P++ + L 
Sbjct: 977  -----------------------TPISLNLPLPMSHLVKHPSIADASQCSTAPLEQNTL- 1012

Query: 1026 SVAPSGPLLINPAPVHPPTINHPLCNENPVDPTPSQPAPTADSSLVAPSHHIATRSKVGI 847
                S P+L + +   PP  +     E+P    P QP P     +   +H + TR+K GI
Sbjct: 1013 ----SSPVLESISQQPPPPESFS-PTESP-SSLPQQPPP-----VPVNTHSMLTRAKAGI 1061

Query: 846  HK------SKHPICLTTVS-TTINVEPTCFKEANRHIECRRAMSDEFQALQRQETWCLVP 688
            HK      +KH +  T  S TT+   P+ F +A++      AM  EFQALQ   TW LVP
Sbjct: 1062 HKPKVFTATKHTLPSTVDSLTTLPPTPSTFLQASKSSHWMDAMQSEFQALQSTGTWELVP 1121

Query: 687  PPPFANIIGCKLVFKLKRHPDDTIARYKARLVAKYFHQQEGVNFQETFSPVVKMATVRVV 508
                 N++GCK VFK+K  PD TI RYKARLVAK FHQQEG++F +TFSPV K  T+R++
Sbjct: 1122 HNSNYNLVGCKWVFKVKHKPDGTIERYKARLVAKGFHQQEGLDFSDTFSPVAKPTTIRIL 1181

Query: 507  ISLALHYAWNIRQLDVSNAFLHGFISETIYIQQPPGFIDSSQSGYVCRLRKALYGLRQAP 328
            +S+A+ YAW I QLDVSNAFLHG + E +Y+ QPPGF+D S+  +VC+LRK+LYGL+QAP
Sbjct: 1182 LSIAVTYAWFIHQLDVSNAFLHGHLKEDVYMIQPPGFVDPSKPHHVCKLRKSLYGLKQAP 1241

Query: 327  CA*FDCLSTYLLHLGFLMSKDDDSLFVQKDSCRLTILLVYV-DILITGSDPTYITHFLSK 151
             A ++   T LL LGF  S  D SLF+++D+  +T +LVYV DI+ITGS  T     +S 
Sbjct: 1242 RAWYEAFYTALLSLGFSPSYSDPSLFIKRDT-SITFILVYVDDIIITGSSSTACKSIISN 1300

Query: 150  MKSQFEARILVKFIIFLAL 94
            ++  F  + L     FL +
Sbjct: 1301 LQLMFPVKDLGDIHYFLGI 1319



 Score = 60.8 bits (146), Expect = 7e-06
 Identities = 29/43 (67%), Positives = 33/43 (76%)
 Frame = -2

Query: 130  KDLGQIHHFLGIEVSSNTKGLLLHQHKYALDILFQTAMTDCKP 2
            KDLG IH+FLGIEV  + KGLLLHQ KYALD+L +T M   KP
Sbjct: 1308 KDLGDIHYFLGIEVHKSAKGLLLHQTKYALDLLKKTDMLGAKP 1350


>gb|PKU62264.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 1100

 Score =  301 bits (770), Expect = 2e-87
 Identities = 194/504 (38%), Positives = 263/504 (52%), Gaps = 5/504 (0%)
 Frame = -3

Query: 1554 KSPYKILFPKISDYQFLRVFGALCFPWLRPYS-HKLEPRSR-CVFQDYCARSKGYRCLDP 1381
            ++P+  L      Y  L  FG  CFPWLRPY+ +KL PRSR C F  Y    KGY+CLD 
Sbjct: 404  QTPFYRLHGHHPSYTHLCTFGCQCFPWLRPYAANKLSPRSRECTFIGYSPFHKGYKCLDL 463

Query: 1380 STGTMFISRHVRFFEDIFPFSFDLQAAKSYHSNTKHSPYXXXXXXXXXXXXXXXXXXXXX 1201
             +  +FISRHV F E  FP+        +  S+++H+                       
Sbjct: 464  LSNKIFISRHVTFNESQFPYRTTNPVKPTTFSHSQHTTPPMLLI---------------- 507

Query: 1200 XXXXXXXXXXXXXXXXXXTQQPRSQRSITTTIPTSDSV--PAMLILRNHSVTPIDLSPLG 1027
                                 P S  S     PTS  +   A +   +HS++ I+  P  
Sbjct: 508  ---------------------PTSLASKPVPTPTSKPLHTSASITTTDHSLSSINEIPF- 545

Query: 1026 SVAPSGPLLINPAPVHPPTINHPLCNENPVDPTPSQPAPTADSSLVAPSHHIATRSKVGI 847
                  P+ +        T N P         TPS P          PSHH+ TR K GI
Sbjct: 546  ------PISV--------TSNIP---------TPSAPH--------LPSHHMQTRLKSGI 574

Query: 846  HKSKHPICLTTVSTTINVEPTCFKEANRHIECRRAMSDEFQALQRQETWCLVPPPPFANI 667
             K K  + L T  +  N  PT + +A +H   R+AMS+EF ALQ+Q TW LVP P    I
Sbjct: 575  SKPKQILSLLTAHSP-NPTPTTYAQAVKHSHWRQAMSEEFHALQKQATWTLVPAPDHTPI 633

Query: 666  IGCKLVFKLKRHPDDTIARYKARLVAKYFHQQEGVNFQETFSPVVKMATVRVVISLALHY 487
            +GCK  FK+K  P+  + RYKARLVA+ + QQ GVN+ ETFSPV KM T+R++++LAL+ 
Sbjct: 634  LGCKWTFKIKLLPNGQVDRYKARLVAQGYDQQYGVNYTETFSPVAKMTTIRILLTLALNR 693

Query: 486  AWNIRQLDVSNAFLHGFISETIYIQQPPGFIDSSQSGYVCRLRKALYGLRQAPCA*FDCL 307
             W I QLDVSNAFLHG +SE IY++QPPGF+DS+    VC+L K+LYGL+QAP   FD L
Sbjct: 694  NWQILQLDVSNAFLHGDLSENIYMRQPPGFVDSASPSSVCKLNKSLYGLKQAPRQWFDKL 753

Query: 306  STYLLHLGFLMSKDDDSLFVQKDSCRLTILLVYV-DILITGSDPTYITHFLSKMKSQFEA 130
            +T+L + GF  ++ D SL     +     LL+YV D LITG+D   + + LSK+ SQF  
Sbjct: 754  TTFLQNQGFRFTRSDPSLLSYHHNNIQIFLLIYVDDFLITGNDSAALNNLLSKLHSQFAL 813

Query: 129  RILVKFIIFLALRSLLIPRAYYCT 58
            +   +  +FL ++ L  P   + T
Sbjct: 814  KQSSQLSLFLGIQILRQPTGLFLT 837


>gb|PNX95113.1| copia-type polyprotein [Trifolium pratense]
          Length = 1376

 Score =  303 bits (775), Expect = 4e-87
 Identities = 177/481 (36%), Positives = 256/481 (53%), Gaps = 6/481 (1%)
 Frame = -3

Query: 1551 SPYKILFPKISDYQFLRVFGALCFPWLRPYSH-KLEPRSR-CVFQDYCARSKGYRCLDPS 1378
            +PY ILF    +Y  L+ FG LCFPWL+PY+H KLE RS  C+F  Y      Y C +  
Sbjct: 639  TPYHILFKHSPNYTKLKTFGCLCFPWLKPYTHNKLEARSEPCIFLGYSMTQSAYICYNFK 698

Query: 1377 TGTMFISRHVRFFEDIFPFSFDLQAAKSYHSNTKHSPYXXXXXXXXXXXXXXXXXXXXXX 1198
                F+SRHV+F E+IFPF  D        +   +S                        
Sbjct: 699  NNKTFVSRHVQFVENIFPFCRDTHGQPIPSTTPMNS------------------------ 734

Query: 1197 XXXXXXXXXXXXXXXXXTQQPRSQRSITTTIPTSDSVPAMLILRNHSVTPIDLSPLGSVA 1018
                                P +Q       PT+   P +        +P   SP    +
Sbjct: 735  ---------TTLPLTSFIPNPTTQPPPCNPNPTTTPSPNL-------PSPNPTSPELQQS 778

Query: 1017 PSGPLLINPAPVHPPTINHPLCNENPVDPTPSQPAPTADSSLVAP---SHHIATRSKVGI 847
                 L NP P    + N  L    P + T S     A++SL AP   +H + TR K GI
Sbjct: 779  TPNTSLPNPTPSESQSHNQSL--NLPHEHTLSTSQSAAEASLPAPFAETHSMTTRGKAGI 836

Query: 846  HKSKHPICLTTVSTTINVEPTCFKEANRHIECRRAMSDEFQALQRQETWCLVPPPPFANI 667
             K K    +T      ++EPTC  +A +H E + AMSDEF AL +  TW LVPP P  N+
Sbjct: 837  FKPKKLFSVTKYPLPPSIEPTCVTQALQHTEWKEAMSDEFSALMKNGTWSLVPPQPHFNV 896

Query: 666  IGCKLVFKLKRHPDDTIARYKARLVAKYFHQQEGVNFQETFSPVVKMATVRVVISLALHY 487
            I  K VF+LKR+PD +I+RYKARLVAK FHQ+ G+++++TFSPV+K  T+++V+ +AL  
Sbjct: 897  ISNKWVFRLKRNPDGSISRYKARLVAKGFHQRPGIDYKDTFSPVIKPQTIKMVLCIALSK 956

Query: 486  AWNIRQLDVSNAFLHGFISETIYIQQPPGFIDSSQSGYVCRLRKALYGLRQAPCA*FDCL 307
             W++ Q+DV+NAFL+G ++E +Y+ QP GF+  +   YVC+L K+LYGL+QAP A +D L
Sbjct: 957  GWSLMQMDVNNAFLNGTLNEEVYMSQPHGFVHQTYPNYVCKLHKSLYGLKQAPRAWYDAL 1016

Query: 306  STYLLHLGFLMSKDDDSLFVQKDSCRLTILLVYV-DILITGSDPTYITHFLSKMKSQFEA 130
             +++++ GF  SK D SLF+ +    +   LVYV DIL+TG+   ++  F + + ++F  
Sbjct: 1017 HSFVVNCGFTKSKSDPSLFIYQRDYIVAYFLVYVDDILLTGNSSKFLHTFKTSLAAKFSL 1076

Query: 129  R 127
            +
Sbjct: 1077 K 1077


>emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera]
          Length = 773

 Score =  293 bits (749), Expect = 9e-87
 Identities = 183/492 (37%), Positives = 264/492 (53%), Gaps = 3/492 (0%)
 Frame = -3

Query: 1554 KSPYKILFPKISDYQFLRVFGALCFPWLRPYS-HKLEPRSR-CVFQDYCARSKGYRCLDP 1381
            +SP + LF K+ +Y  LRVFG LCFP LRPY+ HKL  RS  CVF  Y    KGY CLD 
Sbjct: 33   QSPTQTLFHKLPNYHHLRVFGCLCFPSLRPYTQHKLCYRSTACVFLGYAPAHKGYLCLDV 92

Query: 1380 STGTMFISRHVRFFEDIFPFSFDLQAAKSYHSNTKHSPYXXXXXXXXXXXXXXXXXXXXX 1201
            ST  ++ISR+V F E  FPF    Q++    S + H P                      
Sbjct: 93   STNRIYISRNVIFHESSFPF----QSSSPPSSPSPHLP---------------------- 126

Query: 1200 XXXXXXXXXXXXXXXXXXTQQPRSQRSITTTIPTSDSVPAMLILRNHSVTPIDLSPLGSV 1021
                              +    S  ++++ I TSDS+P ++        P+  +     
Sbjct: 127  --------SSTPALINSPSLSAPSSPAVSSPIITSDSIPPLI--------PVPFATSSPA 170

Query: 1020 APSGPLLINPAPVHPPTINHPLCNENPVDPTPSQPAPTADSSLVAPSHHIATRSKVGIHK 841
            APS P    P P++                                +H + TR+K GIHK
Sbjct: 171  APSPP----PLPLN--------------------------------THPMVTRAKSGIHK 194

Query: 840  SKHPICLTTVSTTINVEPTCFKEANRHIECRRAMSDEFQALQRQETWCLVPPPPFANIIG 661
             +  I   T       EP  + +A ++    +AM+ E+QAL R  TW LVPPP  A+I+G
Sbjct: 195  KRSFIVQHT------TEPRTYSQAFKNDSWVQAMNSEYQALLRNNTWSLVPPPSSAHIVG 248

Query: 660  CKLVFKLKRHPDDTIARYKARLVAKYFHQQEGVNFQETFSPVVKMATVRVVISLALHYAW 481
            C+ ++KLK  PD +I R+KARLVA+ F Q  G+++ +TFSPVVK  T+R++++LA+ + W
Sbjct: 249  CRWIYKLKYRPDGSIDRHKARLVAQGFTQTPGIDYFDTFSPVVKPCTIRLILALAVSFQW 308

Query: 480  NIRQLDVSNAFLHGFISETIYIQQPPGFIDSSQSGYVCRLRKALYGLRQAPCA*FDCLST 301
            ++RQLDV N FL+G + E +++ QP GF++ +   YVC+L KALYGL+QAP A F  L  
Sbjct: 309  SVRQLDVENGFLNGDLEEEVFMTQPQGFVNPTYPTYVCKLHKALYGLKQAPRAWFQKLRI 368

Query: 300  YLLHLGFLMSKDDDSLFVQKDSCRLTILLVYV-DILITGSDPTYITHFLSKMKSQFEARI 124
             LL  GF  S+ D SLF+   +  + ILLVYV DIL+TGS+PT ++HF+S ++++F  R 
Sbjct: 369  ALLDYGFQSSRADTSLFIFHTATDILILLVYVDDILVTGSNPTLVSHFISYLRTKFALRD 428

Query: 123  LVKFIIFLALRS 88
            L     FL +++
Sbjct: 429  LGPLSYFLGIQA 440


>gb|PKU70166.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 1300

 Score =  299 bits (765), Expect = 5e-86
 Identities = 197/502 (39%), Positives = 271/502 (53%), Gaps = 6/502 (1%)
 Frame = -3

Query: 1551 SPYKILFPKISDYQFLRVFGALCFPWLRPYS-HKLEPRSRC-VFQDYCARSKGYRCLDPS 1378
            SP++ +  +   Y  LRVFG  CFP + P + HKL+P++   VF  Y    KGY+CL   
Sbjct: 663  SPFERIHNRKPQYTHLRVFGCECFPLIPPQARHKLQPKATSHVFLGYSDLHKGYKCLSIK 722

Query: 1377 TGTMFISRHVRFFEDIFPFSFDLQAAKSYHSNTKHSPYXXXXXXXXXXXXXXXXXXXXXX 1198
            T  + ISRH+ F E  F FS DL  + S  +NT+ SP                       
Sbjct: 723  TNKITISRHITFQEQRFSFS-DLAHSVS-TNNTELSP----------------------- 757

Query: 1197 XXXXXXXXXXXXXXXXXTQQPRSQRSITTTIPTSDSVPAMLILRNHSVTPIDLSPLGSVA 1018
                                          +PT  SVP+      H V P  +S   + A
Sbjct: 758  ---------------------------AVLLPT--SVPS---YSPHHVQPHPISQ--NTA 783

Query: 1017 PS-GPLLINPAPVHPPTINHPLCNENPVDPTPSQPAPTADSSLVAPSHHIATRSKVGIHK 841
            P+ G    +  PV  P + H         P PS P      SLV PSHH+ TRSK G  +
Sbjct: 784  PNIGTSTSSSIPV--PVVAH--------QPAPSSP-----QSLV-PSHHMVTRSKTGSLR 827

Query: 840  SKHPICLTTVSTTINV--EPTCFKEANRHIECRRAMSDEFQALQRQETWCLVPPPPFANI 667
                  L  +    N   +PT + EA++H E R+AM++EF ALQ+Q TW LV PPP A+I
Sbjct: 828  PTTKFNLLHLYNQPNTSPDPTNYSEASKHFEWRQAMANEFLALQKQGTWTLVKPPPNASI 887

Query: 666  IGCKLVFKLKRHPDDTIARYKARLVAKYFHQQEGVNFQETFSPVVKMATVRVVISLALHY 487
            +GCK  +K KRH D TIA +KARLVA+  HQQ G+++ ETFSPV K+ T+R+ +++ALH+
Sbjct: 888  LGCKWTYKTKRHADGTIAMHKARLVAQGNHQQYGLDYMETFSPVEKLPTIRIFLTIALHH 947

Query: 486  AWNIRQLDVSNAFLHGFISETIYIQQPPGFIDSSQSGYVCRLRKALYGLRQAPCA*FDCL 307
             W + QLDV+NAFLHG I+ET+Y+ QP GF DS+   YVC L KALYGL+QAP   ++  
Sbjct: 948  HWPVHQLDVANAFLHGHITETVYMTQPRGFEDSTHPDYVCHLNKALYGLKQAPRQWYNTF 1007

Query: 306  STYLLHLGFLMSKDDDSLFV-QKDSCRLTILLVYVDILITGSDPTYITHFLSKMKSQFEA 130
            ++ LLHLGF  S+ D SLFV   + CR+ +L+   DILI+G+DPT +T  L+K+  QF  
Sbjct: 1008 TSTLLHLGFSHSQSDPSLFVYNHNKCRIYLLVYVDDILISGNDPTAVTTILAKLSQQFNM 1067

Query: 129  RILVKFIIFLALRSLLIPRAYY 64
            + L     F+ ++       Y+
Sbjct: 1068 KHLGPASEFIGIKITKSDNCYF 1089


>gb|PKU70208.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 1221

 Score =  296 bits (759), Expect = 2e-85
 Identities = 183/499 (36%), Positives = 257/499 (51%), Gaps = 3/499 (0%)
 Frame = -3

Query: 1551 SPYKILFPKISDYQFLRVFGALCFPWLRPYS-HKLEPRSR-CVFQDYCARSKGYRCLDPS 1378
            +PY +L  +   Y  L+ FG LC+PWL+P S +KL P+S  CVF  Y    KGYRC++  
Sbjct: 527  TPYALLHHQTPSYLHLKTFGCLCYPWLKPSSPNKLHPKSTACVFVGYSPSHKGYRCINLQ 586

Query: 1377 TGTMFISRHVRFFEDIFPFSFDLQAAKSYHSNTKHSPYXXXXXXXXXXXXXXXXXXXXXX 1198
             G + ISRHV F EDIFP+        +  S +  SP                       
Sbjct: 587  NGKLHISRHVVFNEDIFPYPVHKTTIPASQSPSTISP----------------------- 623

Query: 1197 XXXXXXXXXXXXXXXXXTQQPRSQRSITTTIPTSDSVPAMLILRNHSVTPIDLSPLGSVA 1018
                                        T IPTS  +P    L N + T    SP     
Sbjct: 624  ---------------------------LTLIPTSTILPTPQTLPNSNPTAPVTSP----- 651

Query: 1017 PSGPLLINPAPVHPPTINHPLCNENPVDPTPSQPAPTADSSLVAPSHHIATRSKVGIHKS 838
               P L    P   P+ +H + + N        P P   ++++  SH I TRSK G  K 
Sbjct: 652  ---PALTENTP--NPSSDHSISHTN-------SPIPPPSTAVLPSSHPILTRSKTGNLKP 699

Query: 837  KHPICLTTVSTTINVEPTCFKEANRHIECRRAMSDEFQALQRQETWCLVPPPPFANIIGC 658
            KH   L     T    PTCF +A +    R AMS+EF ALQ+Q TW LVPPP   NI+G 
Sbjct: 700  KHQFDLLATQHT-QFTPTCFSQAIKSAHWRSAMSEEFTALQKQGTWSLVPPPTNRNILGS 758

Query: 657  KLVFKLKRHPDDTIARYKARLVAKYFHQQEGVNFQETFSPVVKMATVRVVISLALHYAWN 478
            +  F+ K   D T+ RYKARLVA+ F+QQ G+++++TFSPV KM T+R+++++ALH  W+
Sbjct: 759  RWTFRTKLKSDGTLDRYKARLVAQGFNQQFGIDYKDTFSPVEKMPTIRILLTVALHRGWS 818

Query: 477  IRQLDVSNAFLHGFISETIYIQQPPGFIDSSQSGYVCRLRKALYGLRQAPCA*FDCLSTY 298
            + Q DVSNAFLHG + E +Y++QP GF+D     +VC+L K +YGL+QAP   F   +  
Sbjct: 819  VFQFDVSNAFLHGTLHEEVYMKQPQGFVDKQFPHHVCKLHKTIYGLKQAPREWFHTFTDL 878

Query: 297  LLHLGFLMSKDDDSLFVQKDSCRLTILLVYV-DILITGSDPTYITHFLSKMKSQFEARIL 121
            L  LGF  SK D SL + K +     +L+YV DILI+G++ + I+  ++K++  F  + L
Sbjct: 879  LQSLGFSFSKSDPSLLLYKHNGIQIYMLLYVDDILISGNNHSSISSLITKLQQNFSLKEL 938

Query: 120  VKFIIFLALRSLLIPRAYY 64
                 FL ++ L  P  Y+
Sbjct: 939  GPVSFFLGIQVLHKPNGYF 957


>gb|PRQ35692.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1207

 Score =  290 bits (743), Expect = 3e-83
 Identities = 195/548 (35%), Positives = 279/548 (50%), Gaps = 61/548 (11%)
 Frame = -3

Query: 1551 SPYKILFPKISDYQFLRVFGALCFPWLRP-YSHKLEPRS-RCVFQDYCARSKGYRCLDPS 1378
            +P+  L+     Y  LRVFG  CFP+L     +KL  RS  CVF  Y  + KGYRCL+P+
Sbjct: 382  TPHTRLYGHPPSYSSLRVFGCSCFPYLGTNVPNKLSSRSVECVFLGYSPQHKGYRCLNPN 441

Query: 1377 TGTMFISRHVRFFEDIFPFSFDLQAAKSYHSNTKHSPYXXXXXXXXXXXXXXXXXXXXXX 1198
            TG ++ISRHV F E  FP+  +LQ     +S + H  +                      
Sbjct: 442  TGRVYISRHVLFNEINFPYK-NLQV--HTNSASDHFEFTLLSNRANIAPPQAILPSSVSS 498

Query: 1197 XXXXXXXXXXXXXXXXXTQQPRS-QRSITTTIPTSDS--VPAMLILRN--HS---VTPID 1042
                               QP      + +  P+S S   P +  L +  HS   V P+ 
Sbjct: 499  GPSPPDHQIEQSALPFRADQPNDLSPRLQSNDPSSHSGENPPLASLESDMHSINLVLPLP 558

Query: 1041 LSP--LGSVAPSG--PLLINPAPVHPPTINHPLCNENPVDPTPSQPAP--TADSSLVA-- 886
             SP  L S  P+G  P ++     H P        ++ +D  P+  AP    DS +VA  
Sbjct: 559  SSPAQLPSSPPTGRAPPVLTYRRRHRPVAAPEPPAQSTIDQQPNDDAPPVITDSPIVAEP 618

Query: 885  ----------------------------------PSHHIATRSKVGIHKS--------KH 832
                                              P+H + TR + GI +         K+
Sbjct: 619  PIASDPPSPVVVPPPPLPIPAPAPPPIPADEAPPPTHPMRTRLRDGIIQPRIRTDGIVKY 678

Query: 831  PICLTTVSTTINVEPTCFKEANRHIECRRAMSDEFQALQRQETWCLVPPPPFANIIGCKL 652
            PI    +S   ++EPTC+ +A++ +  R AM++E  AL +  TW LV P P  +I+GCK 
Sbjct: 679  PIPKALLSVINSMEPTCYTQASKDVNWRAAMAEEINALLKNHTWSLVAPSPSQHIVGCKW 738

Query: 651  VFKLKRHPDDTIARYKARLVAKYFHQQEGVNFQETFSPVVKMATVRVVISLALHYAWNIR 472
            VF++KR+PD ++ RYKARLVAK FHQQ G+++ ET+SPV+K AT+R V+ +A+   W +R
Sbjct: 739  VFRIKRNPDGSVERYKARLVAKGFHQQHGIDYGETYSPVIKPATIRTVLCVAVSRGWPLR 798

Query: 471  QLDVSNAFLHGFISETIYIQQPPGFIDSSQSGYVCRLRKALYGLRQAPCA*FDCLSTYLL 292
            QLDV NAFLHG++ E +Y+ QPPGF+DSS+  YVC+L KALYGL+QAP A F  +S++LL
Sbjct: 799  QLDVKNAFLHGYLQEDVYMTQPPGFVDSSRPSYVCKLHKALYGLKQAPRAWFQRMSSFLL 858

Query: 291  HLGFLMSKDDDSLFVQKDSCRLTILLVYV-DILITGSDPTYITHFLSKMKSQFEARILVK 115
             +GF  SK D SLF+ +        L+YV DI+ITGS    +  F+  +   F+ + L  
Sbjct: 859  SVGFRHSKADSSLFIYQHGLHTIFFLLYVDDIVITGSSDQLLQTFIDALGRGFDIKDLGP 918

Query: 114  FIIFLALR 91
               FL L+
Sbjct: 919  LHYFLGLQ 926


>gb|PKU77435.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 698

 Score =  277 bits (708), Expect = 2e-81
 Identities = 182/505 (36%), Positives = 262/505 (51%), Gaps = 5/505 (0%)
 Frame = -3

Query: 1536 LFPKISDYQFLRVFGALCFPWLRPY-SHKLEPRSR-CVFQDYCARSKGYRCLDPSTGTMF 1363
            +F    DY  +R FG  CFP L  + SHKL+P S  CVF  Y    KGY+CL+     +F
Sbjct: 1    MFNLTPDYTVMRHFGCACFPHLPQHASHKLQPNSTICVFLGYSENHKGYKCLNRINNHIF 60

Query: 1362 ISRHVRFFEDIFPFSFDLQAAKSYHSNTKHSPYXXXXXXXXXXXXXXXXXXXXXXXXXXX 1183
            ISRHV+F E+ FPF          H+ +  +P                            
Sbjct: 61   ISRHVKFNENFFPF--------QNHTTSTTTP---------------------------- 84

Query: 1182 XXXXXXXXXXXXTQQPRSQRSITTTIPTSDSVPAMLILRNHSVTPIDLSPLGSVAPSGPL 1003
                          QP     +   +PTS +     IL + S+    ++P   V PS   
Sbjct: 85   --------------QP--ALPVQLLLPTSKATD---ILISSSLPTGSINPPQEVTPS--- 122

Query: 1002 LINPAPVHPPTINHPLCNENPVDPTPSQPAPTADSSLVAPSHHIATRSKVGIHKSKHPIC 823
                   H    N+ + N   ++P P       D+ +    H + TRSK G  K    + 
Sbjct: 123  -------HTNHQNNSIPNYQSMEPEPLH----HDAQI---KHPMITRSKTGSLKPTRKMN 168

Query: 822  L--TTVSTTINVEPTCFKEANRHIECRRAMSDEFQALQRQETWCLVPPPPFANIIGCKLV 649
            L   T+S   +  PT + EA++  E R+AM+DEF ALQ+Q TW LVPP P  +I+GC+  
Sbjct: 169  LLHNTISVDHHTTPTNYTEASKVFEWRQAMADEFAALQKQGTWTLVPPSPNMSILGCRWT 228

Query: 648  FKLKRHPDDTIARYKARLVAKYFHQQEGVNFQETFSPVVKMATVRVVISLALHYAWNIRQ 469
            F+ K + D T+AR+KARLVA+   Q+ G++++ETFSPV K+ T+RV+ ++ALH+ W ++Q
Sbjct: 229  FRKKFNADGTVARFKARLVAQGNRQEHGLDYEETFSPVAKLPTIRVLFTIALHHGWPVQQ 288

Query: 468  LDVSNAFLHGFISETIYIQQPPGFIDSSQSGYVCRLRKALYGLRQAPCA*FDCLSTYLLH 289
            LDVSNAFLHG + ET+++QQP GF DS    YVC L KA+YGL+QAP   +   + +L  
Sbjct: 289  LDVSNAFLHGSLQETVFMQQPKGFEDSLNPDYVCHLNKAIYGLKQAPRQWYTTFTNHLTT 348

Query: 288  LGFLMSKDDDSLFVQKDSCRLTILLVYV-DILITGSDPTYITHFLSKMKSQFEARILVKF 112
            LGF  SK D SL V +       LLVYV DILITG++   I+H L ++  +F  + L   
Sbjct: 349  LGFQYSKADPSLLVYRRHDIQIFLLVYVDDILITGNNSEAISHLLRQLHLKFTMKHLGIA 408

Query: 111  IIFLALRSLLIPRAYYCTNTSMLLT 37
              FL +    +P  Y+ + ++  L+
Sbjct: 409  NQFLGINIKTLPDKYFLSQSTYALS 433


>gb|PNX72737.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 950

 Score =  279 bits (714), Expect = 2e-80
 Identities = 168/492 (34%), Positives = 257/492 (52%), Gaps = 3/492 (0%)
 Frame = -3

Query: 1551 SPYKILFPKISDYQFLRVFGALCFPWLRPYS-HKLEPRSR-CVFQDYCARSKGYRCLDPS 1378
            +PY ILF +  +Y  L+ FG LCFPWL+PY+ +KLEPRS  CVF  Y      Y C +  
Sbjct: 398  TPYHILFHRPPNYTKLKTFGCLCFPWLKPYTQNKLEPRSEPCVFLGYSLTQSAYICYNFK 457

Query: 1377 TGTMFISRHVRFFEDIFPFSFDLQAAKSYHSNTKHSPYXXXXXXXXXXXXXXXXXXXXXX 1198
                ++SRHV+F E+ FPFS ++  ++    NT +                         
Sbjct: 458  NHKTYVSRHVQFIENTFPFSENISTSE---PNTPNELVTEPLTTLIPISPTQSISSEQHI 514

Query: 1197 XXXXXXXXXXXXXXXXXTQQPRSQRSITTTIPTSDSVPAMLILRNHSVTPIDLSPLGSVA 1018
                               +P S  S   ++  + S P+   L  H++         S +
Sbjct: 515  PDVPPTPTPNLTSPEPTQPEPPSPPSTLPSLEQTQSEPSSHQLSEHTL---------STS 565

Query: 1017 PSGPLLINPAPVHPPTINHPLCNENPVDPTPSQPAPTADSSLVAPSHHIATRSKVGIHKS 838
             S   +  PAP                    +    T   + +     + + +K  +  S
Sbjct: 566  QSNADVTLPAPF-----------------AETHSMITRGKAGIFKPKKLFSITKYPLPPS 608

Query: 837  KHPICLTTVSTTINVEPTCFKEANRHIECRRAMSDEFQALQRQETWCLVPPPPFANIIGC 658
              P C+T              EA +H E ++AMSDEF AL    TW LVPP P  N+IG 
Sbjct: 609  AEPTCVT--------------EALKHSEWKQAMSDEFTALMNNGTWSLVPPQPHFNVIGN 654

Query: 657  KLVFKLKRHPDDTIARYKARLVAKYFHQQEGVNFQETFSPVVKMATVRVVISLALHYAWN 478
            K VF+LKR+PD +I+RYKARLVAK FHQ+ G+++++TFSPV+K  T+++V+ +AL   WN
Sbjct: 655  KWVFRLKRNPDGSISRYKARLVAKGFHQRPGIDYKDTFSPVIKPQTIKMVLCIALSKNWN 714

Query: 477  IRQLDVSNAFLHGFISETIYIQQPPGFIDSSQSGYVCRLRKALYGLRQAPCA*FDCLSTY 298
            + Q+DV+NAFL+G ++E +Y+ QPPGF+ SS   +VC+L K+LYGL+QAP A ++ L ++
Sbjct: 715  LMQMDVNNAFLNGTLNEEVYMVQPPGFVHSSHPNFVCKLHKSLYGLKQAPRAWYNALHSF 774

Query: 297  LLHLGFLMSKDDDSLFVQKDSCRLTILLVYV-DILITGSDPTYITHFLSKMKSQFEARIL 121
            + + GF  SK D SLF+ K    +   LVYV D+L+TG+  T++ +F + + ++F  + +
Sbjct: 775  VCNYGFFKSKSDPSLFIYKKDHIVAYFLVYVDDLLLTGNSSTFLNNFKTTLAAKFSLKDM 834

Query: 120  VKFIIFLALRSL 85
             +   FL +  L
Sbjct: 835  GRPSHFLGVELL 846


>gb|PKU78648.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 1368

 Score =  280 bits (717), Expect = 3e-79
 Identities = 184/504 (36%), Positives = 258/504 (51%), Gaps = 5/504 (0%)
 Frame = -3

Query: 1554 KSPYKILFPKISDYQFLRVFGALCFPWLRPYS-HKLEPRSR-CVFQDYCARSKGYRCLDP 1381
            ++P+  L     +Y  LR FG  CFPWLRPY+ +KL PRS+ C F  Y    KGY+CL+ 
Sbjct: 675  QTPFYRLHGHHPNYTHLRTFGCQCFPWLRPYTANKLLPRSQECTFIGYSPVHKGYKCLNS 734

Query: 1380 STGTMFISRHVRFFEDIFPFSFDLQAAKSYHSNTKHSPYXXXXXXXXXXXXXXXXXXXXX 1201
             +  +FISRHV F E  FPF   L   KS ++ + ++P                      
Sbjct: 735  YSNKIFISRHVTFNETCFPFKTTL--PKSINTPSNYTPPLVLI----------------- 775

Query: 1200 XXXXXXXXXXXXXXXXXXTQQPRSQRSITTTIPTSDSVPAMLILRNHSVTP-IDLSPLGS 1024
                                 P S      T PT  +V     +  H VTP    SP  +
Sbjct: 776  ---------------------PPS----LATNPTPSTVHTTTQI-THPVTPTTQQSPAST 809

Query: 1023 VAPSGPLLINPAPVHPPTINHPLCNENPVDPTPSQPAPT-ADSSLVAPSHHIATRSKVGI 847
               S   ++       PT+     +  P+   PS    T   S ++ P H          
Sbjct: 810  QNSSNSSML-------PTV-----SAQPIPNPPSHHMQTRLKSGIIKPKH---------- 847

Query: 846  HKSKHPICLTTVSTTINVEPTCFKEANRHIECRRAMSDEFQALQRQETWCLVPPPPFANI 667
                  I     S   +  P  + +A +H   R+AMS+EF ALQ+Q TW LVP P    I
Sbjct: 848  ------ILSLFTSAPTDSTPKTYAQAIKHPHWRQAMSEEFHALQKQSTWTLVPAPAQTPI 901

Query: 666  IGCKLVFKLKRHPDDTIARYKARLVAKYFHQQEGVNFQETFSPVVKMATVRVVISLALHY 487
            +GCK  FK K  P+  + RYKARLVA+ + QQ GVN+ ETFSPV KM T+R++++LAL+ 
Sbjct: 902  LGCKWTFKTKLLPNGQVDRYKARLVAQGYDQQYGVNYTETFSPVAKMTTIRILLTLALNR 961

Query: 486  AWNIRQLDVSNAFLHGFISETIYIQQPPGFIDSSQSGYVCRLRKALYGLRQAPCA*FDCL 307
             W IR+LDVSNAFLHG +SET+Y++QPPGF+D++    VC+L K+LYGL+QAP   F+ L
Sbjct: 962  NWEIRRLDVSNAFLHGDLSETVYMRQPPGFVDTTSPSAVCKLNKSLYGLKQAPRQWFEKL 1021

Query: 306  STYLLHLGFLMSKDDDSLFVQKDSCRLTILLVYV-DILITGSDPTYITHFLSKMKSQFEA 130
            +T+L H GF  ++ D SL   + +     LL+YV DILITG+D   +T  LS +   F  
Sbjct: 1022 TTFLQHQGFRFTRSDPSLLTFRRNTIQIFLLIYVDDILITGNDHAALTELLSTLHKHFAL 1081

Query: 129  RILVKFIIFLALRSLLIPRAYYCT 58
            + L +  +FL ++ +  P   + T
Sbjct: 1082 KQLSQLSLFLGIQIIRQPTGLFLT 1105