BLASTX nr result

ID: Ophiopogon22_contig00007948 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon22_contig00007948
         (463 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020261615.1| probable 28S rRNA (cytosine(4447)-C(5))-meth...    71   3e-11
ref|XP_020261614.1| probable 28S rRNA (cytosine(4447)-C(5))-meth...    71   3e-11

>ref|XP_020261615.1| probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase isoform
           X2 [Asparagus officinalis]
          Length = 553

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 43/67 (64%), Positives = 47/67 (70%), Gaps = 8/67 (11%)
 Frame = +1

Query: 1   AVNNDGE-------DAHNKYKFWKKRKPEKR-ATKDDAEKNGKVIPSSTVRQKKKRKFPS 156
           AV +DGE       +  NKYKFW+KRK  K  ATK    KNGKVIPSSTVR KKKRK PS
Sbjct: 478 AVVDDGEKGESITNEKFNKYKFWEKRKKLKNNATK----KNGKVIPSSTVRTKKKRKLPS 533

Query: 157 REEISQA 177
           +EEISQA
Sbjct: 534 KEEISQA 540


>ref|XP_020261614.1| probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase isoform
           X1 [Asparagus officinalis]
          Length = 578

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 43/67 (64%), Positives = 47/67 (70%), Gaps = 8/67 (11%)
 Frame = +1

Query: 1   AVNNDGE-------DAHNKYKFWKKRKPEKR-ATKDDAEKNGKVIPSSTVRQKKKRKFPS 156
           AV +DGE       +  NKYKFW+KRK  K  ATK    KNGKVIPSSTVR KKKRK PS
Sbjct: 503 AVVDDGEKGESITNEKFNKYKFWEKRKKLKNNATK----KNGKVIPSSTVRTKKKRKLPS 558

Query: 157 REEISQA 177
           +EEISQA
Sbjct: 559 KEEISQA 565


Top