BLASTX nr result

ID: Ophiopogon22_contig00004382 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon22_contig00004382
         (411 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ONK58747.1| uncharacterized protein A4U43_C09F16240 [Asparagu...    55   5e-07

>gb|ONK58747.1| uncharacterized protein A4U43_C09F16240 [Asparagus officinalis]
          Length = 115

 Score = 55.1 bits (131), Expect = 5e-07
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
 Frame = -2

Query: 368 SSSYATQVTRTQHDGPRFPNLQMLFKSRQAA----EEDCTVVKRSXXXXXXXXXXXXXXX 201
           +S+   Q   ++++GPRFPNL M+FK ++ A    +    V++RS               
Sbjct: 31  ASTRTDQNISSKYEGPRFPNLHMMFKHKETATTQQDHHPVVIERSVETVEKTRSHEEK-- 88

Query: 200 XXXXXXXXEGNVDMDAREYIKRRHQNYLQRLASMN 96
                     N+DM+A EYIKR+HQ+Y QRL +M+
Sbjct: 89  ----------NIDMEADEYIKRKHQSYYQRLMTMD 113


Top