BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon22_contig00004031
         (2134 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KZV39555.1| hypothetical protein F511_13790, partial [Dorcoce...   815   0.0  
gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subc...   816   0.0  
gb|KZV51625.1| hypothetical protein F511_24998 [Dorcoceras hygro...   816   0.0  
emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]         815   0.0  
gb|AAK84454.1|AC087192_15 putative polyprotein [Oryza sativa Jap...   814   0.0  
emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]         815   0.0  
gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group]     814   0.0  
gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Ja...   814   0.0  
emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]         814   0.0  
gb|ABA97938.1| retrotransposon protein, putative, Ty1-copia subc...   814   0.0  
gb|AAP54573.2| retrotransposon protein, putative, Ty1-copia subc...   814   0.0  
gb|AAT77367.1| putative polyprotein [Oryza sativa Japonica Group...   814   0.0  
gb|AAV24814.1| putative polyprotein [Oryza sativa Japonica Group]     813   0.0  
gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-...   814   0.0  
gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japoni...   813   0.0  
gb|ABA91445.2| retrotransposon protein, putative, Ty1-copia subc...   813   0.0  
gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-...   813   0.0  
gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group]     815   0.0  
gb|AAK71544.1|AC087852_4 putative polyprotein [Oryza sativa Japo...   812   0.0  
gb|AAT69606.1| putative polyprotein [Oryza sativa Japonica Group...   812   0.0  

>gb|KZV39555.1| hypothetical protein F511_13790, partial [Dorcoceras hygrometricum]
          Length = 1165

 Score =  815 bits (2105), Expect = 0.0
 Identities = 393/719 (54%), Positives = 532/719 (73%), Gaps = 10/719 (1%)
 Frame = +3

Query: 3    IGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGLNFIGK 182
            IG + LK+TS K + L++V HVP+IR+NL+SGSLL + G++LVFES+K V++KG  F+GK
Sbjct: 320  IGNVVLKMTSGKEVNLKNVLHVPDIRKNLVSGSLLSKAGFRLVFESDKFVLTKGGMFVGK 379

Query: 183  GFMNNGLFKLNVKHSSISAPIALN--------IEPSVTWHQRLGHANYNSIKRLMQLNLI 338
            G+ +NGLFKLNV +  +  P A N        IE S  WH+RLGH N+N+++RL  LN++
Sbjct: 380  GYQHNGLFKLNVMN--VIRPEAKNKINNSSYLIEISNLWHERLGHVNFNTLQRLANLNVL 437

Query: 339  PKFNVKDHDKCETCVEAKLPKKPFKTIDRDSEILELIHSDVCDSGRT-SRGGNKYFVTFI 515
            P F     +KCE CVE KL K PF ++ R ++ LELIH+DVCD     +RGG +YF+TFI
Sbjct: 438  PAFKRNPQEKCEICVETKLAKAPFHSVTRSTKPLELIHTDVCDLKLVQTRGGKRYFITFI 497

Query: 516  DDCSKYCHLYLIKTKDEVINKFKVYKAEVENQLEKTIKILRSDRGGEYTSNELKQFCEDN 695
            DDC++YC++YL+++KDE I  F  YK EVENQL   IK++RSDRGGEY +   ++FC ++
Sbjct: 498  DDCTRYCYVYLLRSKDEAIEAFTKYKNEVENQLTSKIKMIRSDRGGEYVA-PFEEFCSNS 556

Query: 696  GIIHEMTAPYTPQSNGVAERKNRTLMDMVNSMLINSGVPENLWGEALMTACYILNRIPFK 875
            GIIH+ TAPY+PQSNGVAERKNRTL +M+N++L NSG+P+NLWGEA++TA +ILN+IP K
Sbjct: 557  GIIHQTTAPYSPQSNGVAERKNRTLKEMMNALLTNSGLPQNLWGEAILTANHILNKIPHK 616

Query: 876  NSDKTPYTIWKNRNPNLEYLKVWGCLAKVKIPENKRKKIGPKTVDGIFIGYASDSNANRF 1055
              ++TPY +WK R P+ +YLKVWGCLAKV+IP+ K+ KIGPKT+D +FIGYA +S+A RF
Sbjct: 617  GKNETPYELWKGRKPSYKYLKVWGCLAKVEIPKPKQVKIGPKTIDCVFIGYALNSSAYRF 676

Query: 1056 LIINSEINDIANNTIVEARDAYYFENIFPYKTRIGNQDXXXXXXXXXXXXXXXXXXXXXX 1235
            L+  SEI+DI+  TI+E+R+A +FE  FP K +  +                        
Sbjct: 677  LVHKSEISDISEGTILESRNAVFFEYKFPCKEKKESSTKSAYEITIESSETNDEP----- 731

Query: 1236 XVRRSKRARVEK-VHEDFYALLVEDSPTSFEDAMKSVDSPFWKEAINNEIQSIVQNQTWE 1412
              RRSKRAR+EK    +F   +++D P + ++A+ + ++PFWKEAI +EI SI+ N TWE
Sbjct: 732  --RRSKRARIEKSFGPEFLTYILDDEPQTIQEALSNPEAPFWKEAIQDEIDSIMHNHTWE 789

Query: 1413 LTDLPPGCKTIGCKWVFKKKLRPDGTVDKYKARLVAKGFTQKSGIDYFDVYSPVARITTI 1592
            LTDLPPGCK +GCKW+ K+K + DG++DKYKARLVAKGF QK G D+FD YSPV RIT+I
Sbjct: 790  LTDLPPGCKPLGCKWILKRKYKEDGSIDKYKARLVAKGFRQKEGYDFFDTYSPVTRITSI 849

Query: 1593 RVLVALASIHKLIIHQMDVKTAFLNGDLHEEIYMDQPEGFIVSGQEHKVCKLIRSLYGLK 1772
            RVL+A+A++H+L IHQMDVKTAFLNG+L EEIYM+QPEGF++ GQE KVCKL++SLYGLK
Sbjct: 850  RVLIAIAALHELEIHQMDVKTAFLNGELEEEIYMEQPEGFVIPGQEKKVCKLVKSLYGLK 909

Query: 1773 QAPKQWHMKFDEIILSYGFEINQTDECVYHKLDGVKIVILCLYVDDILIFGSDIQIINDI 1952
            QAPKQWH KFD  + S GF+IN+ D+CVY K      +I+C+YVDD+LI G++ ++I D 
Sbjct: 910  QAPKQWHEKFDSTMKSNGFKINECDKCVYIKGTSTSFIIICIYVDDMLIMGNNHKLIIDT 969

Query: 1953 KHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYIEKILDNFYSPYCQPVSTPYD 2129
            K  L ++F+ KDLG  ++IL  KI R  +G +LSQ+HYIEK++  F +   +P  TP D
Sbjct: 970  KEMLRKHFETKDLGLCDIILGIKISRTPDGIILSQTHYIEKVIQRFSTLMSRPARTPMD 1028


>gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1287

 Score =  816 bits (2109), Expect = 0.0
 Identities = 399/724 (55%), Positives = 531/724 (73%), Gaps = 14/724 (1%)
 Frame = +3

Query: 3    IGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGLNFIGK 182
            +G ++LK TS K + L++V HVP I RNL+SGS L + G+KLVFESNKVV+SK   FIGK
Sbjct: 302  VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGK 361

Query: 183  GFMNNGLFKLNVK---HSSISAPIALNIEPSVTWHQRLGHANYNSIKRLMQLNLIPKFNV 353
            G+   GLF+ ++    + S++       + +  WH RL H N+  + RL  + LIPKF++
Sbjct: 362  GYECGGLFRFSLSDFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSI 421

Query: 354  KDHDKCETCVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFVTFIDDCS 527
                KC +CV++K P+KP K  + R+   LEL+HSD+C+ +G  ++GG +YF+TFIDD +
Sbjct: 422  VKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFIDDAT 481

Query: 528  KYCHLYLIKTKDEVINKFKVYKAEVENQLEKTIKILRSDRGGEYTSNELKQFCEDNGIIH 707
            ++C++YL+KTKDE ++ FK+YKAEVENQL++ IK LRSDRGGE+ SNE   FCE++GIIH
Sbjct: 482  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 541

Query: 708  EMTAPYTPQSNGVAERKNRTLMDMVNSMLINSGVPENLWGEALMTACYILNRIPFKNSDK 887
            EMT PY+P+SNG+AERKNRTL D+VN+ML  +G+P+  WGEAL+T+ ++LNR+P +N DK
Sbjct: 542  EMTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK 601

Query: 888  TPYTIWKNRNPNLEYLKVWGCLAKVKIPENKRKKIGPKTVDGIFIGYASDSNANRFLIIN 1067
            TPY IW  R P+L YL+ WGCLAKV +P  K++K+GPKTVD +F+GYA  S A RFLI+ 
Sbjct: 602  TPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK 661

Query: 1068 SEINDIANNTIVEARDAYYFENIFPYK-TRIGNQ-------DXXXXXXXXXXXXXXXXXX 1223
            SE+ D+   TI+E+RDA +FE+ FP K T  G+                           
Sbjct: 662  SEVPDMHVGTIMESRDAIFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEE 721

Query: 1224 XXXXXVRRSKRARVEK-VHEDFYALLVEDSPTSFEDAMKSVDSPFWKEAINNEIQSIVQN 1400
                  RRSKR R  K   +DF   LV+D+P S  +A  S D+ +WKEA+ +E+ SI+ N
Sbjct: 722  DVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIAN 781

Query: 1401 QTWELTDLPPGCKTIGCKWVFKKKLRPDGTVDKYKARLVAKGFTQKSGIDYFDVYSPVAR 1580
             TWE+T+ P GCK +GCKWVFKKKLRPDGT++KYKARLVAKG+TQK G D+FD YSPVAR
Sbjct: 782  GTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVAR 841

Query: 1581 ITTIRVLVALASIHKLIIHQMDVKTAFLNGDLHEEIYMDQPEGFIVSGQEHKVCKLIRSL 1760
            +TTIRVL++LA+ H L++HQMDVKTAFLNG+L EEIYMDQP+GF+V GQE KVCKL++SL
Sbjct: 842  LTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSL 901

Query: 1761 YGLKQAPKQWHMKFDEIILSYGFEINQTDECVYHKLDGVKIVILCLYVDDILIFGSDIQI 1940
            YGLKQAPKQWH KFD+ + S GF +N+ D+CVY++  G + VILCLYVDDILIFG+++++
Sbjct: 902  YGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEV 961

Query: 1941 INDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYIEKILDNFYSPYCQPVST 2120
            IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+EKIL+ F     +P  T
Sbjct: 962  INEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPT 1021

Query: 2121 PYDP 2132
            PY P
Sbjct: 1022 PYKP 1025


>gb|KZV51625.1| hypothetical protein F511_24998 [Dorcoceras hygrometricum]
          Length = 1328

 Score =  816 bits (2109), Expect = 0.0
 Identities = 395/719 (54%), Positives = 532/719 (73%), Gaps = 10/719 (1%)
 Frame = +3

Query: 3    IGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGLNFIGK 182
            IG + LK+TS K + L++V HVP+IR+NL+SGSLL + G++LVFES+K V++KG  F+GK
Sbjct: 352  IGNVVLKMTSGKEVNLKNVLHVPDIRKNLVSGSLLSKAGFRLVFESDKFVLTKGGMFVGK 411

Query: 183  GFMNNGLFKLNVKHSSISAPIALN--------IEPSVTWHQRLGHANYNSIKRLMQLNLI 338
            G+ +NGLFKLNV +  +  P A N        IE S  WH+RLGH N+N+++RL  LN++
Sbjct: 412  GYQHNGLFKLNVMN--VIRPEAKNKINNSSYLIEISNLWHERLGHVNFNTLQRLANLNVL 469

Query: 339  PKFNVKDHDKCETCVEAKLPKKPFKTIDRDSEILELIHSDVCDSGRT-SRGGNKYFVTFI 515
            P F     +KCE CVE KL K PF ++ R ++ LELIH+DVCD     +RGG +YF+TFI
Sbjct: 470  PAFKRNPQEKCEICVETKLAKAPFHSVTRSTKPLELIHTDVCDLKLVQTRGGKRYFITFI 529

Query: 516  DDCSKYCHLYLIKTKDEVINKFKVYKAEVENQLEKTIKILRSDRGGEYTSNELKQFCEDN 695
            DDC++YC++YL+++KDE I  F  YK EVENQL   IK++RSDRGGEY +   ++FC ++
Sbjct: 530  DDCTRYCYVYLLRSKDEAIEAFTKYKNEVENQLTSKIKMIRSDRGGEYVA-PFEEFCSNS 588

Query: 696  GIIHEMTAPYTPQSNGVAERKNRTLMDMVNSMLINSGVPENLWGEALMTACYILNRIPFK 875
            GIIH+ TAPY+PQSNGVAERKNRTL +M+N++L NSG+P+NLWGEA++TA +ILN+IP K
Sbjct: 589  GIIHQTTAPYSPQSNGVAERKNRTLKEMMNALLTNSGLPQNLWGEAILTANHILNKIPHK 648

Query: 876  NSDKTPYTIWKNRNPNLEYLKVWGCLAKVKIPENKRKKIGPKTVDGIFIGYASDSNANRF 1055
              ++TPY +WK R P+ +YLKVWGCLAKV+IP+ K+ KIGPKT+D +FIGYA +S+A RF
Sbjct: 649  GKNETPYELWKGRKPSYKYLKVWGCLAKVEIPKPKQVKIGPKTIDCVFIGYALNSSAYRF 708

Query: 1056 LIINSEINDIANNTIVEARDAYYFENIFPYKTRIGNQDXXXXXXXXXXXXXXXXXXXXXX 1235
            L+  SEI+DI+  TI+E+R+A +FE  FP K +  +                        
Sbjct: 709  LVHKSEISDISEGTILESRNAVFFEYKFPCKEKKESSTKSAYEITIESSETNDEP----- 763

Query: 1236 XVRRSKRARVEK-VHEDFYALLVEDSPTSFEDAMKSVDSPFWKEAINNEIQSIVQNQTWE 1412
              RRSKRAR+EK    +F   +++D P + ++A+ + ++PFWKEAI +EI SI+ N TWE
Sbjct: 764  --RRSKRARIEKSFGPEFLTYILDDEPQTIQEALSNPEAPFWKEAIQDEIDSIMHNHTWE 821

Query: 1413 LTDLPPGCKTIGCKWVFKKKLRPDGTVDKYKARLVAKGFTQKSGIDYFDVYSPVARITTI 1592
            LTDLPPGCK +GCKW+ K+K + DG++DKYKARLVAKGF QK G D+FD YSPV RIT+I
Sbjct: 822  LTDLPPGCKPLGCKWILKRKYKEDGSIDKYKARLVAKGFRQKEGYDFFDTYSPVTRITSI 881

Query: 1593 RVLVALASIHKLIIHQMDVKTAFLNGDLHEEIYMDQPEGFIVSGQEHKVCKLIRSLYGLK 1772
            RVL+A+A++H+L IHQMDVKTAFLNG+L EEIYM+QPEGF++ GQE KVCKL++SLYGLK
Sbjct: 882  RVLIAIAALHELEIHQMDVKTAFLNGELEEEIYMEQPEGFVIPGQEKKVCKLVKSLYGLK 941

Query: 1773 QAPKQWHMKFDEIILSYGFEINQTDECVYHKLDGVKIVILCLYVDDILIFGSDIQIINDI 1952
            QAPKQWH KFD  + S GF+IN+ D+CVY K      +I+CLYVDD+LI G++ ++I D 
Sbjct: 942  QAPKQWHEKFDSTMKSNGFKINECDKCVYIKGTSTSFIIICLYVDDMLIMGNNHKLIIDT 1001

Query: 1953 KHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYIEKILDNFYSPYCQPVSTPYD 2129
            K  L ++F+ KDLG  ++IL  KI R  +G +LSQ+HYIEK+L  F +   +P  TP D
Sbjct: 1002 KEMLRKHFETKDLGLCDIILGIKISRTPDGIILSQTHYIEKVLQRFSTLMSRPARTPMD 1060


>emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]
          Length = 1302

 Score =  815 bits (2104), Expect = 0.0
 Identities = 398/724 (54%), Positives = 531/724 (73%), Gaps = 14/724 (1%)
 Frame = +3

Query: 3    IGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGLNFIGK 182
            +G ++LK TS K + L++V HVP I RNL+SGS L + G+KLVFESNKVV+SK   FIGK
Sbjct: 341  VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGK 400

Query: 183  GFMNNGLFKLNVK---HSSISAPIALNIEPSVTWHQRLGHANYNSIKRLMQLNLIPKFNV 353
            G+   GLF+ ++    + S++       + +  WH RL H N+  + RL  + LIPKF++
Sbjct: 401  GYECGGLFRFSLSDFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSI 460

Query: 354  KDHDKCETCVEAKLPKKPFKTI-DRDSEILELIHSDVCD-SGRTSRGGNKYFVTFIDDCS 527
                KC +CV++K P+KP K   +R+   LEL+HSD+C+ +G  ++GG +YF+T IDD +
Sbjct: 461  VKSSKCHSCVQSKQPRKPHKAAKERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDAT 520

Query: 528  KYCHLYLIKTKDEVINKFKVYKAEVENQLEKTIKILRSDRGGEYTSNELKQFCEDNGIIH 707
            ++C++YL+KTKDE ++ FK+YKAE+ENQL++ IK LRSDRGGE+ SNE   FCE++GIIH
Sbjct: 521  RFCYVYLLKTKDEALDYFKIYKAEIENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 580

Query: 708  EMTAPYTPQSNGVAERKNRTLMDMVNSMLINSGVPENLWGEALMTACYILNRIPFKNSDK 887
            E T PY+P+SNG+AERKNRTL D+VN+ML  +G+P+  WGEAL+T+ ++LNR+P +N DK
Sbjct: 581  ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK 640

Query: 888  TPYTIWKNRNPNLEYLKVWGCLAKVKIPENKRKKIGPKTVDGIFIGYASDSNANRFLIIN 1067
            TPY IW  R P+L YL+ WGCLAKV +P  K++K+GPKTVD +F+GYA  S A RFLI+ 
Sbjct: 641  TPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK 700

Query: 1068 SEINDIANNTIVEARDAYYFENIFPYK-TRIGNQ-------DXXXXXXXXXXXXXXXXXX 1223
            SE+ D+   TI+E+RDA +FE+ FP K T  G+                           
Sbjct: 701  SEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPSEQTEHTHELVSEE 760

Query: 1224 XXXXXVRRSKRARVEK-VHEDFYALLVEDSPTSFEDAMKSVDSPFWKEAINNEIQSIVQN 1400
                  RRSKR R  K   +DF   LV+D+P S  +A  S D+ +WKEAI +E+ SI+ N
Sbjct: 761  DVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAICSEMDSIIAN 820

Query: 1401 QTWELTDLPPGCKTIGCKWVFKKKLRPDGTVDKYKARLVAKGFTQKSGIDYFDVYSPVAR 1580
             TWE+T+ P GCK +GCKWVFKKKLRPDGT++KYKARLVAKG+TQK G D+FD YSPVAR
Sbjct: 821  GTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVAR 880

Query: 1581 ITTIRVLVALASIHKLIIHQMDVKTAFLNGDLHEEIYMDQPEGFIVSGQEHKVCKLIRSL 1760
            +TTIRVL++LA+ H L++HQMDVKTAFLNG+L EEIYMDQP+GF+V GQE KVCKL++SL
Sbjct: 881  LTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSL 940

Query: 1761 YGLKQAPKQWHMKFDEIILSYGFEINQTDECVYHKLDGVKIVILCLYVDDILIFGSDIQI 1940
            YGLKQAPKQWH KFD+ ++S GF +N+ D+CVY++  G + VILCLYVDDILIFG+++++
Sbjct: 941  YGLKQAPKQWHEKFDKTLISAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEV 1000

Query: 1941 INDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYIEKILDNFYSPYCQPVST 2120
            IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+EKIL+ F     +P  T
Sbjct: 1001 INEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPT 1060

Query: 2121 PYDP 2132
            PYDP
Sbjct: 1061 PYDP 1064


>gb|AAK84454.1|AC087192_15 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1308

 Score =  814 bits (2103), Expect = 0.0
 Identities = 398/724 (54%), Positives = 530/724 (73%), Gaps = 14/724 (1%)
 Frame = +3

Query: 3    IGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGLNFIGK 182
            +G ++LK TS K + L++V HVP I RNL+SGS L + G+KLVFESNKVV+SK   FIGK
Sbjct: 341  VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGK 400

Query: 183  GFMNNGLFKLNVK---HSSISAPIALNIEPSVTWHQRLGHANYNSIKRLMQLNLIPKFNV 353
            G+   GLF+ ++    + S++       + +  WH RL H N+  + RL  + LIPKF++
Sbjct: 401  GYECGGLFRFSLSDFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSI 460

Query: 354  KDHDKCETCVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFVTFIDDCS 527
                KC +CV++K P+KP K  + R+   LEL+HSD+C+ +G  ++GG +YF+T IDD +
Sbjct: 461  VKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDAT 520

Query: 528  KYCHLYLIKTKDEVINKFKVYKAEVENQLEKTIKILRSDRGGEYTSNELKQFCEDNGIIH 707
            ++C++YL+KTKDE ++ FK+YKAEVENQL++ IK LRSDRGGE+ SNE   FCE++GIIH
Sbjct: 521  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 580

Query: 708  EMTAPYTPQSNGVAERKNRTLMDMVNSMLINSGVPENLWGEALMTACYILNRIPFKNSDK 887
            E T PY+P+SNG+AERKNRTL D+VN+ML  +G+P+  WGEAL+T+ ++LNR+P +N DK
Sbjct: 581  ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK 640

Query: 888  TPYTIWKNRNPNLEYLKVWGCLAKVKIPENKRKKIGPKTVDGIFIGYASDSNANRFLIIN 1067
            TPY IW  R P+L YL+ WGCLAKV +P  K++K+GPKTVD +F+GYA  S A RFLI+ 
Sbjct: 641  TPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK 700

Query: 1068 SEINDIANNTIVEARDAYYFENIFPYK-TRIGNQ-------DXXXXXXXXXXXXXXXXXX 1223
            SE+ D+   TI+E+RDA +FE+ FP K T  G+                           
Sbjct: 701  SEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEE 760

Query: 1224 XXXXXVRRSKRARVEK-VHEDFYALLVEDSPTSFEDAMKSVDSPFWKEAINNEIQSIVQN 1400
                  RRSKR R  K   +DF   LV+D+P S  +A  S D+ +WKEA+ +E+ SI+ N
Sbjct: 761  DVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIAN 820

Query: 1401 QTWELTDLPPGCKTIGCKWVFKKKLRPDGTVDKYKARLVAKGFTQKSGIDYFDVYSPVAR 1580
             TWE+T+ P GCK +GCKWVFKKKLRPDGT++KYKARLVAKG+TQK G D+FD YSPVAR
Sbjct: 821  GTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVAR 880

Query: 1581 ITTIRVLVALASIHKLIIHQMDVKTAFLNGDLHEEIYMDQPEGFIVSGQEHKVCKLIRSL 1760
            +TTIRVL++LA+ H L++HQMDVKTAFLNG+L EEIYMDQP+GF+V GQE KVCKL++SL
Sbjct: 881  LTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSL 940

Query: 1761 YGLKQAPKQWHMKFDEIILSYGFEINQTDECVYHKLDGVKIVILCLYVDDILIFGSDIQI 1940
            YGLKQAPKQWH KFD+ + S GF +N+ D+CVY++  G + VILCLYVDDILIFG+++++
Sbjct: 941  YGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEV 1000

Query: 1941 INDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYIEKILDNFYSPYCQPVST 2120
            IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+EKIL+ F     +P  T
Sbjct: 1001 INEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPT 1060

Query: 2121 PYDP 2132
            PYDP
Sbjct: 1061 PYDP 1064


>emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]
          Length = 1320

 Score =  815 bits (2104), Expect = 0.0
 Identities = 397/724 (54%), Positives = 532/724 (73%), Gaps = 14/724 (1%)
 Frame = +3

Query: 3    IGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGLNFIGK 182
            +G ++LK TS K + L++V HVP I RNL+SGS L + G+KLVFESNKVV+SK   FIGK
Sbjct: 341  VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGK 400

Query: 183  GFMNNGLFKLNVK---HSSISAPIALNIEPSVTWHQRLGHANYNSIKRLMQLNLIPKFNV 353
            G+   GLF+ ++    + S++       + +  WH RL H N+  + RL  + LIPKF++
Sbjct: 401  GYECGGLFRFSLSDFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSI 460

Query: 354  KDHDKCETCVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFVTFIDDCS 527
                KC +CV++K P+KP K  + R+   LEL+HSD+C+ +G  ++GG +YF+TFIDD +
Sbjct: 461  VKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFIDDAT 520

Query: 528  KYCHLYLIKTKDEVINKFKVYKAEVENQLEKTIKILRSDRGGEYTSNELKQFCEDNGIIH 707
            ++C++YL+KTKDE ++ FK+YKAEVENQL++ IK LRSDRGGE+ SNE   FCE++GIIH
Sbjct: 521  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 580

Query: 708  EMTAPYTPQSNGVAERKNRTLMDMVNSMLINSGVPENLWGEALMTACYILNRIPFKNSDK 887
            E T PY+P+SNG+AERKNRTL D+VN+ML  +G+P+  WGEAL+T+ ++LNR+P +N DK
Sbjct: 581  ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK 640

Query: 888  TPYTIWKNRNPNLEYLKVWGCLAKVKIPENKRKKIGPKTVDGIFIGYASDSNANRFLIIN 1067
            TPY IW  R P+L YL++WGCLAKV +P  K++K+GPKTVD +F+GYA  S A RFLI+ 
Sbjct: 641  TPYEIWIGRKPSLSYLRIWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK 700

Query: 1068 SEINDIANNTIVEARDAYYFENIFPYK-TRIGNQ-------DXXXXXXXXXXXXXXXXXX 1223
            SE+ D+   TI+E+RDA +FE+ FP K T  G+                           
Sbjct: 701  SEVLDMHVGTIIESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEE 760

Query: 1224 XXXXXVRRSKRARVEK-VHEDFYALLVEDSPTSFEDAMKSVDSPFWKEAINNEIQSIVQN 1400
                  RRSKR R  K   +DF   LV+D+P S  +A  S D+ +WKEA+ +E+ SI+ N
Sbjct: 761  DVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIAN 820

Query: 1401 QTWELTDLPPGCKTIGCKWVFKKKLRPDGTVDKYKARLVAKGFTQKSGIDYFDVYSPVAR 1580
             TWE+T+ P GCK +GCKWVFKKKLRPDGT++KYKARLVAKG+TQK G D+FD YSPVAR
Sbjct: 821  GTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVAR 880

Query: 1581 ITTIRVLVALASIHKLIIHQMDVKTAFLNGDLHEEIYMDQPEGFIVSGQEHKVCKLIRSL 1760
            +TTIRVL++LA+ H L++HQMDVKTAFLNG+L EEIYMDQP+GF+V GQE KVCKL++SL
Sbjct: 881  LTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSL 940

Query: 1761 YGLKQAPKQWHMKFDEIILSYGFEINQTDECVYHKLDGVKIVILCLYVDDILIFGSDIQI 1940
            YGLKQAPKQWH KFD+ ++S GF +N+ D+CVY++  G + VILCLYVDDILIFG+++++
Sbjct: 941  YGLKQAPKQWHEKFDKTLISAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEV 1000

Query: 1941 INDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYIEKILDNFYSPYCQPVST 2120
            IN++K FLS+NFDMKDLG A++ILN K++R  N   L QSHY+EKIL+ F     +P  T
Sbjct: 1001 INEVKSFLSKNFDMKDLGVADVILNIKLIRGENEITLLQSHYVEKILNRFGYIDSKPSPT 1060

Query: 2121 PYDP 2132
            PYDP
Sbjct: 1061 PYDP 1064


>gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  814 bits (2102), Expect = 0.0
 Identities = 398/724 (54%), Positives = 530/724 (73%), Gaps = 14/724 (1%)
 Frame = +3

Query: 3    IGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGLNFIGK 182
            +G ++LK TS K + L++V HVP I RNL+SGS L + G+KLVFESNKVV+SK   FIGK
Sbjct: 341  VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGK 400

Query: 183  GFMNNGLFKLNVK---HSSISAPIALNIEPSVTWHQRLGHANYNSIKRLMQLNLIPKFNV 353
            G+   GLF+ ++    + S++       + +  WH RL H N+  + RL  + LIPKF++
Sbjct: 401  GYECGGLFRFSLSDFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSI 460

Query: 354  KDHDKCETCVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFVTFIDDCS 527
                KC +CV++K P+KP K  + R+   LEL+HSD+C+ +G  ++GG +YF+TFIDD +
Sbjct: 461  VKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFIDDAT 520

Query: 528  KYCHLYLIKTKDEVINKFKVYKAEVENQLEKTIKILRSDRGGEYTSNELKQFCEDNGIIH 707
            ++C++YL+KTKDE ++ FK+YKAEVENQL++ IK LRSDRGGE+ SNE   FCE++GIIH
Sbjct: 521  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 580

Query: 708  EMTAPYTPQSNGVAERKNRTLMDMVNSMLINSGVPENLWGEALMTACYILNRIPFKNSDK 887
            E T PY+P+SNG+A+RKNRTL D+VN+ML  +G+P+  WGEAL+T+ ++LNR+P +N DK
Sbjct: 581  ERTPPYSPESNGIAKRKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK 640

Query: 888  TPYTIWKNRNPNLEYLKVWGCLAKVKIPENKRKKIGPKTVDGIFIGYASDSNANRFLIIN 1067
            TPY IW  R P+L YL+ WGCLAKV +P  K+ K+GPKTVD +F+GYA  S A RFLI+ 
Sbjct: 641  TPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKHKLGPKTVDCVFLGYAHHSIAYRFLIVK 700

Query: 1068 SEINDIANNTIVEARDAYYFENIFPYK-TRIGNQ-------DXXXXXXXXXXXXXXXXXX 1223
            SE+ D+   TI+E+RDA +FE+ FP K T  G+                           
Sbjct: 701  SEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEE 760

Query: 1224 XXXXXVRRSKRARVEK-VHEDFYALLVEDSPTSFEDAMKSVDSPFWKEAINNEIQSIVQN 1400
                  RRSKR R  K   +DF   LV+D+P S  +A  S D+ +WKEA+ +E+ SI+ N
Sbjct: 761  DVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIAN 820

Query: 1401 QTWELTDLPPGCKTIGCKWVFKKKLRPDGTVDKYKARLVAKGFTQKSGIDYFDVYSPVAR 1580
             TWE+T+ P GCK +GCKWVFKKKLRPDGT++KYKARLVAKG+TQK G D+FD YSPVAR
Sbjct: 821  GTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVAR 880

Query: 1581 ITTIRVLVALASIHKLIIHQMDVKTAFLNGDLHEEIYMDQPEGFIVSGQEHKVCKLIRSL 1760
            +TTIRVL++LA+ H L++HQMDVKTAFLNG+L EEIYMDQP+GF+V GQE KVCKL++SL
Sbjct: 881  LTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSL 940

Query: 1761 YGLKQAPKQWHMKFDEIILSYGFEINQTDECVYHKLDGVKIVILCLYVDDILIFGSDIQI 1940
            YGLKQAPKQWH KFD+ + S GF +N+ D+CVY++  G + VILCLYVDDILIFG+++++
Sbjct: 941  YGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEV 1000

Query: 1941 INDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYIEKILDNFYSPYCQPVST 2120
            IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+EKIL+ F     +P  T
Sbjct: 1001 INEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPT 1060

Query: 2121 PYDP 2132
            PYDP
Sbjct: 1061 PYDP 1064


>gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  814 bits (2102), Expect = 0.0
 Identities = 398/724 (54%), Positives = 530/724 (73%), Gaps = 14/724 (1%)
 Frame = +3

Query: 3    IGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGLNFIGK 182
            +G ++LK TS K + L++V HVP I RNL+SGS L + G+KLVFESNKVV+SK   FIGK
Sbjct: 341  VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGK 400

Query: 183  GFMNNGLFKLNVK---HSSISAPIALNIEPSVTWHQRLGHANYNSIKRLMQLNLIPKFNV 353
            G+   GLF+ ++    + S++       + +  WH RL H N+  + RL  + LIPKF++
Sbjct: 401  GYECGGLFRFSLSDFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSI 460

Query: 354  KDHDKCETCVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFVTFIDDCS 527
                KC +CV++K P+KP K  + R+   LEL+HSD+C+ +G  ++GG +YF+T IDD +
Sbjct: 461  VKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDAT 520

Query: 528  KYCHLYLIKTKDEVINKFKVYKAEVENQLEKTIKILRSDRGGEYTSNELKQFCEDNGIIH 707
            ++C++YL+KTKDE ++ FK+YKAEVENQL++ IK LRSDRGGE+ SNE   FCE++GIIH
Sbjct: 521  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 580

Query: 708  EMTAPYTPQSNGVAERKNRTLMDMVNSMLINSGVPENLWGEALMTACYILNRIPFKNSDK 887
            E T PY+P+SNG+AERKNRTL D+VN+ML  +G+P+  WGEAL+T+ ++LNR+P +N DK
Sbjct: 581  ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK 640

Query: 888  TPYTIWKNRNPNLEYLKVWGCLAKVKIPENKRKKIGPKTVDGIFIGYASDSNANRFLIIN 1067
            TPY IW  R P+L YL+ WGCLAKV +P  K++K+GPKTVD +F+GYA  S A RFLI+ 
Sbjct: 641  TPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK 700

Query: 1068 SEINDIANNTIVEARDAYYFENIFPYK-TRIGNQ-------DXXXXXXXXXXXXXXXXXX 1223
            SE+ D+   TI+E+RDA +FE+ FP K T  G+                           
Sbjct: 701  SEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEE 760

Query: 1224 XXXXXVRRSKRARVEK-VHEDFYALLVEDSPTSFEDAMKSVDSPFWKEAINNEIQSIVQN 1400
                  RRSKR R  K   +DF   LV+D+P S  +A  S D+ +WKEA+ +E+ SI+ N
Sbjct: 761  DVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIAN 820

Query: 1401 QTWELTDLPPGCKTIGCKWVFKKKLRPDGTVDKYKARLVAKGFTQKSGIDYFDVYSPVAR 1580
             TWE+T+ P GCK +GCKWVFKKKLRPDGT++KYKARLVAKG+TQK G D+FD YSPVAR
Sbjct: 821  GTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVAR 880

Query: 1581 ITTIRVLVALASIHKLIIHQMDVKTAFLNGDLHEEIYMDQPEGFIVSGQEHKVCKLIRSL 1760
            +TTIRVL++LA+ H L++HQMDVKTAFLNG+L EEIYMDQP+GF++ GQE KVCKL++SL
Sbjct: 881  LTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKVCKLLKSL 940

Query: 1761 YGLKQAPKQWHMKFDEIILSYGFEINQTDECVYHKLDGVKIVILCLYVDDILIFGSDIQI 1940
            YGLKQAPKQWH KFD+ + S GF +N+ D+CVY++  G + VILCLYVDDILIFG++I++
Sbjct: 941  YGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNIEV 1000

Query: 1941 INDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYIEKILDNFYSPYCQPVST 2120
            IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+EKIL+ F     +P  T
Sbjct: 1001 INEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPT 1060

Query: 2121 PYDP 2132
            PYDP
Sbjct: 1061 PYDP 1064


>emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]
          Length = 1319

 Score =  814 bits (2103), Expect = 0.0
 Identities = 398/724 (54%), Positives = 529/724 (73%), Gaps = 14/724 (1%)
 Frame = +3

Query: 3    IGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGLNFIGK 182
            +G ++LK TS K + L++V HVP I RNL+SGS L + G+KLVFESNKVV+SK   FIGK
Sbjct: 341  VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGK 400

Query: 183  GFMNNGLFKLNVK---HSSISAPIALNIEPSVTWHQRLGHANYNSIKRLMQLNLIPKFNV 353
            G+   GLF+ ++    + S++       + +  WH RL H N+  + RL  + LIPKF++
Sbjct: 401  GYECGGLFRFSLSDFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSI 460

Query: 354  KDHDKCETCVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFVTFIDDCS 527
                KC +CV++K P+KP K  + R+   LEL+HSD+C+ +G  ++GG +YF+T IDD +
Sbjct: 461  VKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDAT 520

Query: 528  KYCHLYLIKTKDEVINKFKVYKAEVENQLEKTIKILRSDRGGEYTSNELKQFCEDNGIIH 707
            ++C++YL+KTKDE ++ FK+YKAEVENQL++ I  LRSDRGGE+ SNE   FCE++GIIH
Sbjct: 521  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRRINRLRSDRGGEFFSNEFDLFCEEHGIIH 580

Query: 708  EMTAPYTPQSNGVAERKNRTLMDMVNSMLINSGVPENLWGEALMTACYILNRIPFKNSDK 887
            E T PY+P+SNG+AERKNRTL D+VN+ML  +G+P+  WGEAL+T+ Y+LNR+P +N DK
Sbjct: 581  ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNYVLNRVPNRNKDK 640

Query: 888  TPYTIWKNRNPNLEYLKVWGCLAKVKIPENKRKKIGPKTVDGIFIGYASDSNANRFLIIN 1067
            TPY IW  R P+L YL+ WGCLAKV +P  K++K+GPKTVD +F+GYA  S A RFLI+ 
Sbjct: 641  TPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK 700

Query: 1068 SEINDIANNTIVEARDAYYFENIFPYK-TRIGNQ-------DXXXXXXXXXXXXXXXXXX 1223
            SE+ D+   TI+E+RDA +FE+ FP K T  G+                           
Sbjct: 701  SEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEE 760

Query: 1224 XXXXXVRRSKRARVEK-VHEDFYALLVEDSPTSFEDAMKSVDSPFWKEAINNEIQSIVQN 1400
                  RRSKR R  K   +DF   LV+D+P S  +A  S D+ +WKEA+ +E+ SI+ N
Sbjct: 761  DVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIAN 820

Query: 1401 QTWELTDLPPGCKTIGCKWVFKKKLRPDGTVDKYKARLVAKGFTQKSGIDYFDVYSPVAR 1580
             TWE+T+ P GCK +GCKWVFKKKLRPDGT++KYKARLVAKG+TQK G D+FD YSPVAR
Sbjct: 821  GTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVAR 880

Query: 1581 ITTIRVLVALASIHKLIIHQMDVKTAFLNGDLHEEIYMDQPEGFIVSGQEHKVCKLIRSL 1760
            +TTIRVL++LA+ H L++HQMDVKTAFLNG+L EEIYMDQP+GF+V GQE KVCKL++SL
Sbjct: 881  LTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSL 940

Query: 1761 YGLKQAPKQWHMKFDEIILSYGFEINQTDECVYHKLDGVKIVILCLYVDDILIFGSDIQI 1940
            YGLKQAPKQWH KFD+ + S GF +N+ D+CVY++  G + VILCLYVDDILIFG+++++
Sbjct: 941  YGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEV 1000

Query: 1941 INDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYIEKILDNFYSPYCQPVST 2120
            IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+EKIL+ F     +P  T
Sbjct: 1001 INEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPT 1060

Query: 2121 PYDP 2132
            PYDP
Sbjct: 1061 PYDP 1064


>gb|ABA97938.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  814 bits (2103), Expect = 0.0
 Identities = 398/724 (54%), Positives = 530/724 (73%), Gaps = 14/724 (1%)
 Frame = +3

Query: 3    IGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGLNFIGK 182
            +G ++LK TS K + L++V HVP I RNL+SGS L + G+KLVFESNKVV+SK   FIGK
Sbjct: 341  VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGK 400

Query: 183  GFMNNGLFKLNVK---HSSISAPIALNIEPSVTWHQRLGHANYNSIKRLMQLNLIPKFNV 353
            G+   GLF+ ++    + S++       + +  WH RL H N+  + RL  + LIPKF++
Sbjct: 401  GYECGGLFRFSLSDFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSI 460

Query: 354  KDHDKCETCVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFVTFIDDCS 527
                KC +CV++K P+KP K  + R+   LEL+HSD+C+ +G  ++GG +YF+T IDD +
Sbjct: 461  VKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDAT 520

Query: 528  KYCHLYLIKTKDEVINKFKVYKAEVENQLEKTIKILRSDRGGEYTSNELKQFCEDNGIIH 707
            ++C++YL+KTKDE ++ FK+YKAEVENQL++ IK LRSDRGGE+ SNE   FCE++GIIH
Sbjct: 521  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 580

Query: 708  EMTAPYTPQSNGVAERKNRTLMDMVNSMLINSGVPENLWGEALMTACYILNRIPFKNSDK 887
            E T PY+P+SNG+AERKNRTL D+VN+ML  +G+P+  WGEAL+T+ ++LNR+P +N DK
Sbjct: 581  ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK 640

Query: 888  TPYTIWKNRNPNLEYLKVWGCLAKVKIPENKRKKIGPKTVDGIFIGYASDSNANRFLIIN 1067
            TPY IW  R P+L YL+ WGCLAKV +P  K++K+GPKTVD +F+GYA  S A RFLI+ 
Sbjct: 641  TPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK 700

Query: 1068 SEINDIANNTIVEARDAYYFENIFPYK-TRIGNQ-------DXXXXXXXXXXXXXXXXXX 1223
            SE+ D+   TI+E+RDA +FE+ FP K T  G+                           
Sbjct: 701  SEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEE 760

Query: 1224 XXXXXVRRSKRARVEK-VHEDFYALLVEDSPTSFEDAMKSVDSPFWKEAINNEIQSIVQN 1400
                  RRSKR R  K   +DF   LV+D+P S  +A  S D+ +WKEA+ +E+ SI+ N
Sbjct: 761  DVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIAN 820

Query: 1401 QTWELTDLPPGCKTIGCKWVFKKKLRPDGTVDKYKARLVAKGFTQKSGIDYFDVYSPVAR 1580
             TWE+T+ P GCK +GCKWVFKKKLRPDGT++KYKARLVAKG+TQK G D+FD YSPVAR
Sbjct: 821  GTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVAR 880

Query: 1581 ITTIRVLVALASIHKLIIHQMDVKTAFLNGDLHEEIYMDQPEGFIVSGQEHKVCKLIRSL 1760
            +TTIRVL++LA+ H L++HQMDVKTAFLNG+L EEIYMDQP+GF+V GQE KVCKL++SL
Sbjct: 881  LTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSL 940

Query: 1761 YGLKQAPKQWHMKFDEIILSYGFEINQTDECVYHKLDGVKIVILCLYVDDILIFGSDIQI 1940
            YGLKQAPKQWH KFD+ + S GF +N+ D+CVY++  G + VILCLYVDDILIFG+++++
Sbjct: 941  YGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEV 1000

Query: 1941 INDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYIEKILDNFYSPYCQPVST 2120
            IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+EKIL+ F     +P  T
Sbjct: 1001 INEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPT 1060

Query: 2121 PYDP 2132
            PYDP
Sbjct: 1061 PYDP 1064


>gb|AAP54573.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  814 bits (2103), Expect = 0.0
 Identities = 398/724 (54%), Positives = 530/724 (73%), Gaps = 14/724 (1%)
 Frame = +3

Query: 3    IGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGLNFIGK 182
            +G ++LK TS K + L++V HVP I RNL+SGS L + G+KLVFESNKVV+SK   FIGK
Sbjct: 341  VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGK 400

Query: 183  GFMNNGLFKLNVK---HSSISAPIALNIEPSVTWHQRLGHANYNSIKRLMQLNLIPKFNV 353
            G+   GLF+ ++    + S++       + +  WH RL H N+  + RL  + LIPKF++
Sbjct: 401  GYECGGLFRFSLSDFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSI 460

Query: 354  KDHDKCETCVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFVTFIDDCS 527
                KC +CV++K P+KP K  + R+   LEL+HSD+C+ +G  ++GG +YF+T IDD +
Sbjct: 461  VKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDAT 520

Query: 528  KYCHLYLIKTKDEVINKFKVYKAEVENQLEKTIKILRSDRGGEYTSNELKQFCEDNGIIH 707
            ++C++YL+KTKDE ++ FK+YKAEVENQL++ IK LRSDRGGE+ SNE   FCE++GIIH
Sbjct: 521  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 580

Query: 708  EMTAPYTPQSNGVAERKNRTLMDMVNSMLINSGVPENLWGEALMTACYILNRIPFKNSDK 887
            E T PY+P+SNG+AERKNRTL D+VN+ML  +G+P+  WGEAL+T+ ++LNR+P +N DK
Sbjct: 581  ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK 640

Query: 888  TPYTIWKNRNPNLEYLKVWGCLAKVKIPENKRKKIGPKTVDGIFIGYASDSNANRFLIIN 1067
            TPY IW  R P+L YL+ WGCLAKV +P  K++K+GPKTVD +F+GYA  S A RFLI+ 
Sbjct: 641  TPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK 700

Query: 1068 SEINDIANNTIVEARDAYYFENIFPYK-TRIGNQ-------DXXXXXXXXXXXXXXXXXX 1223
            SE+ D+   TI+E+RDA +FE+ FP K T  G+                           
Sbjct: 701  SEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEE 760

Query: 1224 XXXXXVRRSKRARVEK-VHEDFYALLVEDSPTSFEDAMKSVDSPFWKEAINNEIQSIVQN 1400
                  RRSKR R  K   +DF   LV+D+P S  +A  S D+ +WKEA+ +E+ SI+ N
Sbjct: 761  DVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIAN 820

Query: 1401 QTWELTDLPPGCKTIGCKWVFKKKLRPDGTVDKYKARLVAKGFTQKSGIDYFDVYSPVAR 1580
             TWE+T+ P GCK +GCKWVFKKKLRPDGT++KYKARLVAKG+TQK G D+FD YSPVAR
Sbjct: 821  GTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVAR 880

Query: 1581 ITTIRVLVALASIHKLIIHQMDVKTAFLNGDLHEEIYMDQPEGFIVSGQEHKVCKLIRSL 1760
            +TTIRVL++LA+ H L++HQMDVKTAFLNG+L EEIYMDQP+GF+V GQE KVCKL++SL
Sbjct: 881  LTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSL 940

Query: 1761 YGLKQAPKQWHMKFDEIILSYGFEINQTDECVYHKLDGVKIVILCLYVDDILIFGSDIQI 1940
            YGLKQAPKQWH KFD+ + S GF +N+ D+CVY++  G + VILCLYVDDILIFG+++++
Sbjct: 941  YGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEV 1000

Query: 1941 INDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYIEKILDNFYSPYCQPVST 2120
            IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+EKIL+ F     +P  T
Sbjct: 1001 INEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPT 1060

Query: 2121 PYDP 2132
            PYDP
Sbjct: 1061 PYDP 1064


>gb|AAT77367.1| putative polyprotein [Oryza sativa Japonica Group]
 gb|AAU10767.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 1320

 Score =  814 bits (2103), Expect = 0.0
 Identities = 398/724 (54%), Positives = 530/724 (73%), Gaps = 14/724 (1%)
 Frame = +3

Query: 3    IGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGLNFIGK 182
            +G ++LK TS K + L++V HVP I RNL+SGS L + G+KLVFESNKVV+SK   FIGK
Sbjct: 341  VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGK 400

Query: 183  GFMNNGLFKLNVK---HSSISAPIALNIEPSVTWHQRLGHANYNSIKRLMQLNLIPKFNV 353
            G+   GLF+ ++    + S++       + +  WH RL H N+  + RL  + LIPKF++
Sbjct: 401  GYECGGLFRFSLSDFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSI 460

Query: 354  KDHDKCETCVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFVTFIDDCS 527
                KC +CV++K P+KP K  + R+   LEL+HSD+C+ +G  ++GG +YF+T IDD +
Sbjct: 461  VKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDAT 520

Query: 528  KYCHLYLIKTKDEVINKFKVYKAEVENQLEKTIKILRSDRGGEYTSNELKQFCEDNGIIH 707
            ++C++YL+KTKDE ++ FK+YKAEVENQL++ IK LRSDRGGE+ SNE   FCE++GIIH
Sbjct: 521  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 580

Query: 708  EMTAPYTPQSNGVAERKNRTLMDMVNSMLINSGVPENLWGEALMTACYILNRIPFKNSDK 887
            E T PY+P+SNG+AERKNRTL D+VN+ML  +G+P+  WGEAL+T+ ++LNR+P +N DK
Sbjct: 581  ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK 640

Query: 888  TPYTIWKNRNPNLEYLKVWGCLAKVKIPENKRKKIGPKTVDGIFIGYASDSNANRFLIIN 1067
            TPY IW  R P+L YL+ WGCLAKV +P  K++K+GPKTVD +F+GYA  S A RFLI+ 
Sbjct: 641  TPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK 700

Query: 1068 SEINDIANNTIVEARDAYYFENIFPYK-TRIGNQ-------DXXXXXXXXXXXXXXXXXX 1223
            SE+ D+   TI+E+RDA +FE+ FP K T  G+                           
Sbjct: 701  SEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEE 760

Query: 1224 XXXXXVRRSKRARVEK-VHEDFYALLVEDSPTSFEDAMKSVDSPFWKEAINNEIQSIVQN 1400
                  RRSKR R  K   +DF   LV+D+P S  +A  S D+ +WKEA+ +E+ SI+ N
Sbjct: 761  DVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIAN 820

Query: 1401 QTWELTDLPPGCKTIGCKWVFKKKLRPDGTVDKYKARLVAKGFTQKSGIDYFDVYSPVAR 1580
             TWE+T+ P GCK +GCKWVFKKKLRPDGT++KYKARLVAKG+TQK G D+FD YSPVAR
Sbjct: 821  GTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVAR 880

Query: 1581 ITTIRVLVALASIHKLIIHQMDVKTAFLNGDLHEEIYMDQPEGFIVSGQEHKVCKLIRSL 1760
            +TTIRVL++LA+ H L++HQMDVKTAFLNG+L EEIYMDQP+GF+V GQE KVCKL++SL
Sbjct: 881  LTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSL 940

Query: 1761 YGLKQAPKQWHMKFDEIILSYGFEINQTDECVYHKLDGVKIVILCLYVDDILIFGSDIQI 1940
            YGLKQAPKQWH KFD+ + S GF +N+ D+CVY++  G + VILCLYVDDILIFG+++++
Sbjct: 941  YGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEV 1000

Query: 1941 INDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYIEKILDNFYSPYCQPVST 2120
            IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+EKIL+ F     +P  T
Sbjct: 1001 INEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPT 1060

Query: 2121 PYDP 2132
            PYDP
Sbjct: 1061 PYDP 1064


>gb|AAV24814.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1289

 Score =  813 bits (2100), Expect = 0.0
 Identities = 398/724 (54%), Positives = 531/724 (73%), Gaps = 14/724 (1%)
 Frame = +3

Query: 3    IGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGLNFIGK 182
            +G ++LK TS K + L++V HVP I RNL+SGS L + G+KLVFESNKVV+SK   FIGK
Sbjct: 341  VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGK 400

Query: 183  GFMNNGLFKLNVK---HSSISAPIALNIEPSVTWHQRLGHANYNSIKRLMQLNLIPKFNV 353
            G+   GLF+ ++    + S++       + +  WH RL H N+  + RL  + LIPKF++
Sbjct: 401  GYECGGLFRFSLSDFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSI 460

Query: 354  KDHDKCETCVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFVTFIDDCS 527
                KC +CV++K P+KP K  + R+   LEL+HSD+C+ +G  ++GG +YF+TFIDD +
Sbjct: 461  VKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFIDDAT 520

Query: 528  KYCHLYLIKTKDEVINKFKVYKAEVENQLEKTIKILRSDRGGEYTSNELKQFCEDNGIIH 707
            ++C++YL+KTKDE ++ FK+YKAEVENQL++ IK LRSDRGGE+ SNE   FCE++GIIH
Sbjct: 521  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 580

Query: 708  EMTAPYTPQSNGVAERKNRTLMDMVNSMLINSGVPENLWGEALMTACYILNRIPFKNSDK 887
            E T PY+P+SNG+AERKNRTL D+VN+ML  +G+P+  WGEAL+T+ ++LNR+P +N DK
Sbjct: 581  ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK 640

Query: 888  TPYTIWKNRNPNLEYLKVWGCLAKVKIPENKRKKIGPKTVDGIFIGYASDSNANRFLIIN 1067
            TPY IW +R P+L YL+ WGCLAKV +P  K++K+GPKTVD +F+GYA  S A RFLI+ 
Sbjct: 641  TPYEIWIDRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAYHSIAYRFLIVK 700

Query: 1068 SEINDIANNTIVEARDAYYFENIFPYK-TRIGNQ-------DXXXXXXXXXXXXXXXXXX 1223
            SE+ D+   TI+E+RDA +FE+ FP K T  G+                           
Sbjct: 701  SEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEE 760

Query: 1224 XXXXXVRRSKRARVEK-VHEDFYALLVEDSPTSFEDAMKSVDSPFWKEAINNEIQSIVQN 1400
                  RRSKR R  K   +DF   LV+D+P S  +A  S D+ +WKEA+ +E+ SI+ N
Sbjct: 761  DVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIAN 820

Query: 1401 QTWELTDLPPGCKTIGCKWVFKKKLRPDGTVDKYKARLVAKGFTQKSGIDYFDVYSPVAR 1580
             TWE+T+ P GCK +GCKWVFKKKLRPDGT++KYKARLVAKG+TQK G D+FD YSPVAR
Sbjct: 821  GTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVAR 880

Query: 1581 ITTIRVLVALASIHKLIIHQMDVKTAFLNGDLHEEIYMDQPEGFIVSGQEHKVCKLIRSL 1760
            +TTIRVL++LA+ H L++HQMDVKTAFLNG+L EEIYM QP+GF+V GQE KVCKL++SL
Sbjct: 881  LTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMYQPDGFVVEGQEGKVCKLLKSL 940

Query: 1761 YGLKQAPKQWHMKFDEIILSYGFEINQTDECVYHKLDGVKIVILCLYVDDILIFGSDIQI 1940
            YGLKQAPKQWH KFD+ + S GF +N+ D+CVY++  G + VILCLYVDDILIFG+++++
Sbjct: 941  YGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEV 1000

Query: 1941 INDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYIEKILDNFYSPYCQPVST 2120
            IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+EKIL+ F     +P  T
Sbjct: 1001 INEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPT 1060

Query: 2121 PYDP 2132
            PYDP
Sbjct: 1061 PYDP 1064


>gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  814 bits (2102), Expect = 0.0
 Identities = 398/724 (54%), Positives = 530/724 (73%), Gaps = 14/724 (1%)
 Frame = +3

Query: 3    IGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGLNFIGK 182
            +G ++LK TS K + L++V HVP I RNL+SGS L + G+KLVFESNKVV+SK   FIGK
Sbjct: 341  VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGK 400

Query: 183  GFMNNGLFKLNVK---HSSISAPIALNIEPSVTWHQRLGHANYNSIKRLMQLNLIPKFNV 353
            G+   GLF+ ++    + S++       + +  WH RL H N+  + RL  + LIPKF++
Sbjct: 401  GYECGGLFRFSLSDFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSI 460

Query: 354  KDHDKCETCVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFVTFIDDCS 527
                KC +CV++K P+KP K  + R+   LEL+HSD+C+ +G  ++GG +YF+T IDD +
Sbjct: 461  VKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDAT 520

Query: 528  KYCHLYLIKTKDEVINKFKVYKAEVENQLEKTIKILRSDRGGEYTSNELKQFCEDNGIIH 707
            ++C++YL+KTKDE ++ FK+YKAEVENQL++ IK LRSDRGGE+ SNE   FCE++GIIH
Sbjct: 521  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 580

Query: 708  EMTAPYTPQSNGVAERKNRTLMDMVNSMLINSGVPENLWGEALMTACYILNRIPFKNSDK 887
            E T PY+P+SNG+AERKNRTL D+VN+ML  +G+P+  WGEAL+T+ ++LNR+P +N DK
Sbjct: 581  ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK 640

Query: 888  TPYTIWKNRNPNLEYLKVWGCLAKVKIPENKRKKIGPKTVDGIFIGYASDSNANRFLIIN 1067
            TPY IW  R P+L YL+ WGCLAKV +P  K++K+GPKTVD +F+GYA  S A RFLI+ 
Sbjct: 641  TPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK 700

Query: 1068 SEINDIANNTIVEARDAYYFENIFPYK-TRIGNQ-------DXXXXXXXXXXXXXXXXXX 1223
            SE+ D+   TI+E+RDA +FE+ FP K T  G+                           
Sbjct: 701  SEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEE 760

Query: 1224 XXXXXVRRSKRARVEK-VHEDFYALLVEDSPTSFEDAMKSVDSPFWKEAINNEIQSIVQN 1400
                  RRSKR R  K   +DF   LV+D+P S  +A  S D+ +WKEA+ +E+ SI+ N
Sbjct: 761  DVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIAN 820

Query: 1401 QTWELTDLPPGCKTIGCKWVFKKKLRPDGTVDKYKARLVAKGFTQKSGIDYFDVYSPVAR 1580
             TWE+T+ P GCK +GCKWVFKKKLRPDGT++KYKARLVAKG+TQK G D+FD YSPVAR
Sbjct: 821  GTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVAR 880

Query: 1581 ITTIRVLVALASIHKLIIHQMDVKTAFLNGDLHEEIYMDQPEGFIVSGQEHKVCKLIRSL 1760
            +TTIRVL++LA+ H L++HQMDVKTAFLNG+L EEIYMDQP+GF++ GQE KVCKL++SL
Sbjct: 881  LTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKVCKLLKSL 940

Query: 1761 YGLKQAPKQWHMKFDEIILSYGFEINQTDECVYHKLDGVKIVILCLYVDDILIFGSDIQI 1940
            YGLKQAPKQWH KFD+ + S GF +N+ D+CVY++  G + VILCLYVDDILIFG++I++
Sbjct: 941  YGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNIEV 1000

Query: 1941 INDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYIEKILDNFYSPYCQPVST 2120
            IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+EKIL+ F     +P  T
Sbjct: 1001 INEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPT 1060

Query: 2121 PYDP 2132
            PYDP
Sbjct: 1061 PYDP 1064


>gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  813 bits (2100), Expect = 0.0
 Identities = 397/724 (54%), Positives = 530/724 (73%), Gaps = 14/724 (1%)
 Frame = +3

Query: 3    IGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGLNFIGK 182
            +G ++LK TS K + L++V HVP I RNL+SGS L + G+KLVFESNKVV+SK   FIGK
Sbjct: 341  VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGK 400

Query: 183  GFMNNGLFKLNVK---HSSISAPIALNIEPSVTWHQRLGHANYNSIKRLMQLNLIPKFNV 353
            G+   GLF+ ++    + S++       + +  WH RL H N+  + RL  + LIPKF++
Sbjct: 401  GYECGGLFRFSLSDFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSI 460

Query: 354  KDHDKCETCVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFVTFIDDCS 527
                KC +CV++K P+KP K  + R+   LEL+HSD+C+ +G  ++GG +YF+T IDD +
Sbjct: 461  VKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDAT 520

Query: 528  KYCHLYLIKTKDEVINKFKVYKAEVENQLEKTIKILRSDRGGEYTSNELKQFCEDNGIIH 707
            ++C++YL+KTKDE ++ FK+YKAEVENQL++ IK LRSDRGGE+ SNE   FCE++GIIH
Sbjct: 521  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 580

Query: 708  EMTAPYTPQSNGVAERKNRTLMDMVNSMLINSGVPENLWGEALMTACYILNRIPFKNSDK 887
            E T PY+P+SNG+AERKNRTL D+VN+ML  +G+P+  WGEAL+T+ ++LNR+P +N DK
Sbjct: 581  ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK 640

Query: 888  TPYTIWKNRNPNLEYLKVWGCLAKVKIPENKRKKIGPKTVDGIFIGYASDSNANRFLIIN 1067
            TPY IW  R P+L YL+ WGCLAKV +P  K++K+GPKTVD +F+GYA  S A RFLI+ 
Sbjct: 641  TPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK 700

Query: 1068 SEINDIANNTIVEARDAYYFENIFPYK-TRIGNQ-------DXXXXXXXXXXXXXXXXXX 1223
            SE+ D+   TI+E+RDA +FE+ FP K T  G+                           
Sbjct: 701  SEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEE 760

Query: 1224 XXXXXVRRSKRARVEK-VHEDFYALLVEDSPTSFEDAMKSVDSPFWKEAINNEIQSIVQN 1400
                  RRSKR R  K   +DF   LV+D+P S  +A  S D+ +WKEA+ +E+ SI+ N
Sbjct: 761  DVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIAN 820

Query: 1401 QTWELTDLPPGCKTIGCKWVFKKKLRPDGTVDKYKARLVAKGFTQKSGIDYFDVYSPVAR 1580
             TWE+T+ P GCK +GCKWVFKKKLRPDGT++KYKARLVAKG+TQK G D+FD YSPVAR
Sbjct: 821  GTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVAR 880

Query: 1581 ITTIRVLVALASIHKLIIHQMDVKTAFLNGDLHEEIYMDQPEGFIVSGQEHKVCKLIRSL 1760
            +TTIRVL++LA+ H L++HQMDVKTAFLNG+L EEIYMDQP+GF++ GQE KVCKL++SL
Sbjct: 881  LTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKVCKLLKSL 940

Query: 1761 YGLKQAPKQWHMKFDEIILSYGFEINQTDECVYHKLDGVKIVILCLYVDDILIFGSDIQI 1940
            YGLKQAPKQWH KFD+ + S GF +N+ D+CVY++  G + VILCLYVDDILIFG+++++
Sbjct: 941  YGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEV 1000

Query: 1941 INDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYIEKILDNFYSPYCQPVST 2120
            IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+EKIL+ F     +P  T
Sbjct: 1001 INEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPT 1060

Query: 2121 PYDP 2132
            PYDP
Sbjct: 1061 PYDP 1064


>gb|ABA91445.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  813 bits (2101), Expect = 0.0
 Identities = 397/724 (54%), Positives = 529/724 (73%), Gaps = 14/724 (1%)
 Frame = +3

Query: 3    IGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGLNFIGK 182
            +G ++LK TS K + L++V HVP I RNL+SGS L + G+KLVFESNKVV+SK   FIGK
Sbjct: 341  VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGK 400

Query: 183  GFMNNGLFKLNVK---HSSISAPIALNIEPSVTWHQRLGHANYNSIKRLMQLNLIPKFNV 353
            G+   GLF+ ++    + S++       + +  WH RL H N+  + RL  + LIPKF++
Sbjct: 401  GYEYGGLFRFSLSDFCNKSVNHICGTVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSI 460

Query: 354  KDHDKCETCVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFVTFIDDCS 527
                KC +CV++K P+KP K  + R+   LEL+HSD+C+ +G  ++GG +YF+T IDD +
Sbjct: 461  VKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDAT 520

Query: 528  KYCHLYLIKTKDEVINKFKVYKAEVENQLEKTIKILRSDRGGEYTSNELKQFCEDNGIIH 707
            ++C++YL+KTKDE ++ FK+YKAEVENQL++ IK LRSDRGGE+ SNE   FCE++GIIH
Sbjct: 521  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 580

Query: 708  EMTAPYTPQSNGVAERKNRTLMDMVNSMLINSGVPENLWGEALMTACYILNRIPFKNSDK 887
            E T PY+P+SNG+AERKNRTL D+VN+ML  +G+P+  WGEAL+T+ ++LNR+P +N DK
Sbjct: 581  ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK 640

Query: 888  TPYTIWKNRNPNLEYLKVWGCLAKVKIPENKRKKIGPKTVDGIFIGYASDSNANRFLIIN 1067
            TPY IW  R P+L YL+ WGCL KV +P  K++K+GPKTVD +F+GYA  S A RFLI+ 
Sbjct: 641  TPYEIWIGRKPSLSYLRTWGCLVKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK 700

Query: 1068 SEINDIANNTIVEARDAYYFENIFPYK-TRIGNQ-------DXXXXXXXXXXXXXXXXXX 1223
            SE+ D+   TI+E+RDA +FE+ FP K T  G+                           
Sbjct: 701  SEVPDMHVGTIMESRDATFFESFFPMKDTNSGSNQPSEIIPSSITPPEQTEHTHELVSEE 760

Query: 1224 XXXXXVRRSKRARVEK-VHEDFYALLVEDSPTSFEDAMKSVDSPFWKEAINNEIQSIVQN 1400
                  RRSKR R  K   +DF   LV+D+P S  +A  S D+ +WKEA+ +E+ SI+ N
Sbjct: 761  DVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIAN 820

Query: 1401 QTWELTDLPPGCKTIGCKWVFKKKLRPDGTVDKYKARLVAKGFTQKSGIDYFDVYSPVAR 1580
             TWE+T+ P GCK +GCKWVFKKKLRPDGT++KYKARLVAKG+TQK G D+FD YSPVAR
Sbjct: 821  GTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVAR 880

Query: 1581 ITTIRVLVALASIHKLIIHQMDVKTAFLNGDLHEEIYMDQPEGFIVSGQEHKVCKLIRSL 1760
            +TTIRVL++LA+ H L++HQMDVKTAFLNG+L EEIYMDQP+GF+V GQE KVCKL++SL
Sbjct: 881  LTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSL 940

Query: 1761 YGLKQAPKQWHMKFDEIILSYGFEINQTDECVYHKLDGVKIVILCLYVDDILIFGSDIQI 1940
            YGLKQAPKQWH KFD+ + S GF +N+ D+CVY++  G + VILCLYVDDILIFG+++++
Sbjct: 941  YGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEV 1000

Query: 1941 INDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYIEKILDNFYSPYCQPVST 2120
            IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+EKIL+ F     +P  T
Sbjct: 1001 INEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPT 1060

Query: 2121 PYDP 2132
            PYDP
Sbjct: 1061 PYDP 1064


>gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1302

 Score =  813 bits (2099), Expect = 0.0
 Identities = 398/724 (54%), Positives = 529/724 (73%), Gaps = 14/724 (1%)
 Frame = +3

Query: 3    IGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGLNFIGK 182
            +G ++LK TS K + L++V HVP I RNL+SGS L + G+KLVFESNKVV+SK   FIGK
Sbjct: 341  VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGK 400

Query: 183  GFMNNGLFKLNVK---HSSISAPIALNIEPSVTWHQRLGHANYNSIKRLMQLNLIPKFNV 353
            G+   GLF+ ++    + S++       + +  WH RL H N+  + RL  + LIPKF++
Sbjct: 401  GYECGGLFRFSLSDFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSI 460

Query: 354  KDHDKCETCVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFVTFIDDCS 527
                KC +CV++K P+KP K  + R+   LEL+HSD+C+ +G  ++GG +YF+T IDD +
Sbjct: 461  VKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDAT 520

Query: 528  KYCHLYLIKTKDEVINKFKVYKAEVENQLEKTIKILRSDRGGEYTSNELKQFCEDNGIIH 707
            ++C++YL+KTKDE ++ FK+YKAEVENQL++ IK LRSDRGGE+ SNE   FCE++GIIH
Sbjct: 521  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 580

Query: 708  EMTAPYTPQSNGVAERKNRTLMDMVNSMLINSGVPENLWGEALMTACYILNRIPFKNSDK 887
            E T PY+P+SNG+AERKNRTL D+VN+ML  +G+P+  WGEAL+T+ ++LNR+P +N DK
Sbjct: 581  ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK 640

Query: 888  TPYTIWKNRNPNLEYLKVWGCLAKVKIPENKRKKIGPKTVDGIFIGYASDSNANRFLIIN 1067
            TPY IW  R P L YL+ WGCLAKV +P  K++K+GPKTVD +F+GYA  S A RFLI+ 
Sbjct: 641  TPYEIWIGRKPLLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK 700

Query: 1068 SEINDIANNTIVEARDAYYFENIFPYK-TRIGNQ-------DXXXXXXXXXXXXXXXXXX 1223
            SE+ D+   TI+E+RDA +FE+ FP K T  G+                           
Sbjct: 701  SEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEE 760

Query: 1224 XXXXXVRRSKRARVEK-VHEDFYALLVEDSPTSFEDAMKSVDSPFWKEAINNEIQSIVQN 1400
                  RRSKR R  K   +DF   LV+D+P S  +A  S D+ +WKEA+ +E+ SI+ N
Sbjct: 761  DVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIAN 820

Query: 1401 QTWELTDLPPGCKTIGCKWVFKKKLRPDGTVDKYKARLVAKGFTQKSGIDYFDVYSPVAR 1580
             TWE+T+ P GCK +GCKWVFKKKLRPDGT++KYKARLVAKG+TQK G D+FD YSPVAR
Sbjct: 821  GTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVAR 880

Query: 1581 ITTIRVLVALASIHKLIIHQMDVKTAFLNGDLHEEIYMDQPEGFIVSGQEHKVCKLIRSL 1760
            +TTIRVL++LA+ H L++HQMDVKTAFLNG+L EEIYMDQP+GF+V GQE KVCKL++SL
Sbjct: 881  LTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSL 940

Query: 1761 YGLKQAPKQWHMKFDEIILSYGFEINQTDECVYHKLDGVKIVILCLYVDDILIFGSDIQI 1940
            YGLKQAPKQWH KFD+ + S GF +N+ D+CVY++  G + VILCLYVDDILIFG+++++
Sbjct: 941  YGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEV 1000

Query: 1941 INDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYIEKILDNFYSPYCQPVST 2120
            IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+EKIL+ F     +P  T
Sbjct: 1001 INEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPT 1060

Query: 2121 PYDP 2132
            PYDP
Sbjct: 1061 PYDP 1064


>gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1391

 Score =  815 bits (2104), Expect = 0.0
 Identities = 399/724 (55%), Positives = 530/724 (73%), Gaps = 14/724 (1%)
 Frame = +3

Query: 3    IGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGLNFIGK 182
            +G ++LK TS K + L++V HVP I RNL+SGS L + G+KLVFESNKVV+SK   FIGK
Sbjct: 430  VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGK 489

Query: 183  GFMNNGLFKLNVK---HSSISAPIALNIEPSVTWHQRLGHANYNSIKRLMQLNLIPKFNV 353
            G+   GLF+ ++    + S++       + +  WH RL H N+  + RL  + LIPKF++
Sbjct: 490  GYECGGLFRFSLSDFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSI 549

Query: 354  KDHDKCETCVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFVTFIDDCS 527
                KC +CV++K P+KP K  + R+   LEL+HSD+C+ +G  ++GG +YF+T IDD +
Sbjct: 550  VKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDAT 609

Query: 528  KYCHLYLIKTKDEVINKFKVYKAEVENQLEKTIKILRSDRGGEYTSNELKQFCEDNGIIH 707
            ++C++YL+KTKDE ++ FK+YKAEVENQL++ IK LRSDRGGE+ SNE   FCE++GIIH
Sbjct: 610  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 669

Query: 708  EMTAPYTPQSNGVAERKNRTLMDMVNSMLINSGVPENLWGEALMTACYILNRIPFKNSDK 887
            E T PY+P+SNG+AERKNRTL D+VN+ML  +G+P+  WGEAL+T+ ++LNRIP +N DK
Sbjct: 670  ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRIPNRNKDK 729

Query: 888  TPYTIWKNRNPNLEYLKVWGCLAKVKIPENKRKKIGPKTVDGIFIGYASDSNANRFLIIN 1067
            TPY IW  R P+L YL+ WGCLAKV +P  K++K+GPKTVD +F+GYA  S A RFLI+ 
Sbjct: 730  TPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK 789

Query: 1068 SEINDIANNTIVEARDAYYFENIFPYK-TRIGNQ-------DXXXXXXXXXXXXXXXXXX 1223
            SE+ D+   TI+E+RDA +FE+ FP K T  G+                           
Sbjct: 790  SEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEE 849

Query: 1224 XXXXXVRRSKRARVEK-VHEDFYALLVEDSPTSFEDAMKSVDSPFWKEAINNEIQSIVQN 1400
                  RRSKR R  K   +DF   LV+D+P S  +A  S D+ +WKEA+ +E+ SI+ N
Sbjct: 850  DVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIAN 909

Query: 1401 QTWELTDLPPGCKTIGCKWVFKKKLRPDGTVDKYKARLVAKGFTQKSGIDYFDVYSPVAR 1580
             TWE+T+ P GCK +GCKWVFKKKLRPDGT++KYKARLVAKG+TQK G D+FD YSPVAR
Sbjct: 910  GTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVAR 969

Query: 1581 ITTIRVLVALASIHKLIIHQMDVKTAFLNGDLHEEIYMDQPEGFIVSGQEHKVCKLIRSL 1760
            +TTIRVL++LA+ H L++HQMDVKTAFLNG+L EEIYMDQP+GF+V GQE KVCKL++SL
Sbjct: 970  LTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSL 1029

Query: 1761 YGLKQAPKQWHMKFDEIILSYGFEINQTDECVYHKLDGVKIVILCLYVDDILIFGSDIQI 1940
            YGLKQAPKQWH KFD+ + S GF +N+ D+CVY++  G + VILCLYVDDILIFG+++++
Sbjct: 1030 YGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEV 1089

Query: 1941 INDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYIEKILDNFYSPYCQPVST 2120
            IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+EKIL+ F     +P  T
Sbjct: 1090 INEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPT 1149

Query: 2121 PYDP 2132
            PYDP
Sbjct: 1150 PYDP 1153


>gb|AAK71544.1|AC087852_4 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1308

 Score =  812 bits (2097), Expect = 0.0
 Identities = 397/724 (54%), Positives = 530/724 (73%), Gaps = 14/724 (1%)
 Frame = +3

Query: 3    IGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGLNFIGK 182
            +G ++LK TS K + L++V HVP I RNL+SGS L + G+KLVFESNKVV+SK   FIGK
Sbjct: 341  VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGK 400

Query: 183  GFMNNGLFKLNVK---HSSISAPIALNIEPSVTWHQRLGHANYNSIKRLMQLNLIPKFNV 353
            G+   GLF+ ++    + S++       + +  WH RL H N+  + RL  + LIPKF++
Sbjct: 401  GYECGGLFRFSLSDFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSI 460

Query: 354  KDHDKCETCVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFVTFIDDCS 527
                KC +CV++K P+KP K  + R+   LEL+HSD+C+ +G  ++GG +YF+T IDD +
Sbjct: 461  VKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDAT 520

Query: 528  KYCHLYLIKTKDEVINKFKVYKAEVENQLEKTIKILRSDRGGEYTSNELKQFCEDNGIIH 707
            ++C++YL+KTKDE ++ FK+YKAEVENQL++ IK LRSDRGGE+ SNE   FCE++GIIH
Sbjct: 521  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 580

Query: 708  EMTAPYTPQSNGVAERKNRTLMDMVNSMLINSGVPENLWGEALMTACYILNRIPFKNSDK 887
            E T PY+P+SNG+AERKNRTL D+VN+ML  +G+P+  WGEAL+T+ ++LNR+P +N DK
Sbjct: 581  ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK 640

Query: 888  TPYTIWKNRNPNLEYLKVWGCLAKVKIPENKRKKIGPKTVDGIFIGYASDSNANRFLIIN 1067
            TPY IW  R P+L YL+ WGCLAKV +P  K++K+GPKTVD +F+GYA  S A RFLI+ 
Sbjct: 641  TPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK 700

Query: 1068 SEINDIANNTIVEARDAYYFENIFPYK-TRIGNQ-------DXXXXXXXXXXXXXXXXXX 1223
            SE+ D+   TI+E+RDA +FE+ FP K T  G+                           
Sbjct: 701  SEVPDMHVGTIMESRDATFFESFFPMKDTHNGSNQPSEIIPSSITPPEQTEHTHELVSEE 760

Query: 1224 XXXXXVRRSKRARVEK-VHEDFYALLVEDSPTSFEDAMKSVDSPFWKEAINNEIQSIVQN 1400
                  RRSKR R  K   +DF   LV+D+P S  +A  S D+ +WKEA+++E+ SI+ N
Sbjct: 761  DVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVHSEMDSIIAN 820

Query: 1401 QTWELTDLPPGCKTIGCKWVFKKKLRPDGTVDKYKARLVAKGFTQKSGIDYFDVYSPVAR 1580
             TWE+T+ P GCK +GCKWVFKKKLRPDGT++KYKARLVAKG+TQK G D+FD YSPVAR
Sbjct: 821  GTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVAR 880

Query: 1581 ITTIRVLVALASIHKLIIHQMDVKTAFLNGDLHEEIYMDQPEGFIVSGQEHKVCKLIRSL 1760
            +TTIRVL++LA+ H L++HQMDVKTAFLNG+L EEIYMDQP+GF+V GQE KVCKL++SL
Sbjct: 881  LTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSL 940

Query: 1761 YGLKQAPKQWHMKFDEIILSYGFEINQTDECVYHKLDGVKIVILCLYVDDILIFGSDIQI 1940
            YGLKQAPKQWH KFD+ + S  F +N+ D+CVY++  G + VILCLYVDDILIFG+++++
Sbjct: 941  YGLKQAPKQWHEKFDKTLTSASFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEV 1000

Query: 1941 INDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYIEKILDNFYSPYCQPVST 2120
            IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+EKIL+ F     +P  T
Sbjct: 1001 INEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPT 1060

Query: 2121 PYDP 2132
            PYDP
Sbjct: 1061 PYDP 1064


>gb|AAT69606.1| putative polyprotein [Oryza sativa Japonica Group]
 gb|AAU90098.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1320

 Score =  812 bits (2098), Expect = 0.0
 Identities = 397/724 (54%), Positives = 530/724 (73%), Gaps = 14/724 (1%)
 Frame = +3

Query: 3    IGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGLNFIGK 182
            +G ++LK TS K + L++V HVP I RNL+SGS L + G+KLVFESNKVV+SK   FIGK
Sbjct: 341  VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGK 400

Query: 183  GFMNNGLFKLNVK---HSSISAPIALNIEPSVTWHQRLGHANYNSIKRLMQLNLIPKFNV 353
            G+   GLF+ ++    + S++       + +  WH RL H N+  + RL  + LIPKF++
Sbjct: 401  GYECGGLFRFSLSDFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSI 460

Query: 354  KDHDKCETCVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFVTFIDDCS 527
                KC +CV++K P+KP K  + R+   LEL+HSD+C+ +G  ++GG +YF+T IDD +
Sbjct: 461  VKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDAT 520

Query: 528  KYCHLYLIKTKDEVINKFKVYKAEVENQLEKTIKILRSDRGGEYTSNELKQFCEDNGIIH 707
            ++C++YL+KTKDE ++ FK+YKAEVENQL++ IK LRSDRGGE+ SNE   FCE++GIIH
Sbjct: 521  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 580

Query: 708  EMTAPYTPQSNGVAERKNRTLMDMVNSMLINSGVPENLWGEALMTACYILNRIPFKNSDK 887
            E T PY+P+SNG+AERKNRTL D+VN+ML  +G+P+  WGEAL+T+ ++LNR+P +N DK
Sbjct: 581  ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK 640

Query: 888  TPYTIWKNRNPNLEYLKVWGCLAKVKIPENKRKKIGPKTVDGIFIGYASDSNANRFLIIN 1067
            TPY IW  R P+L YL+ WGCLAKV +P  K++K+GPKTVD +F+GYA  S A RFLI+ 
Sbjct: 641  TPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK 700

Query: 1068 SEINDIANNTIVEARDAYYFENIFPYK-TRIGNQ-------DXXXXXXXXXXXXXXXXXX 1223
            SE+ D+   TI+E+RDA +FE+ FP K T  G+                           
Sbjct: 701  SEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEE 760

Query: 1224 XXXXXVRRSKRARVEK-VHEDFYALLVEDSPTSFEDAMKSVDSPFWKEAINNEIQSIVQN 1400
                  RRSKR R  K   +DF   LV+D+P S  +A  S D+ +WKEA+ +E+ SI+ N
Sbjct: 761  DVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDANYWKEAVRSEMDSIIAN 820

Query: 1401 QTWELTDLPPGCKTIGCKWVFKKKLRPDGTVDKYKARLVAKGFTQKSGIDYFDVYSPVAR 1580
             TWE+T+ P GCK +GCKWVFKKKLRPDGT++KYKARLVAKG+TQK G D+FD YSPVAR
Sbjct: 821  GTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVAR 880

Query: 1581 ITTIRVLVALASIHKLIIHQMDVKTAFLNGDLHEEIYMDQPEGFIVSGQEHKVCKLIRSL 1760
            +TTIRVL++LA+ H L++HQMDVKTAFLNG+L EEIYMDQP+GF++ GQE KVCKL++SL
Sbjct: 881  LTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQECKVCKLLKSL 940

Query: 1761 YGLKQAPKQWHMKFDEIILSYGFEINQTDECVYHKLDGVKIVILCLYVDDILIFGSDIQI 1940
            YGLKQAPKQWH KFD+ + S GF +N+ D+CVY++  G + VILCLYVDDILIFG+++++
Sbjct: 941  YGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEV 1000

Query: 1941 INDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYIEKILDNFYSPYCQPVST 2120
            IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+EKIL+ F     +P  T
Sbjct: 1001 INEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPT 1060

Query: 2121 PYDP 2132
            PYDP
Sbjct: 1061 PYDP 1064