BLASTX nr result

ID: Ophiopogon22_contig00000189 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon22_contig00000189
         (589 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|WP_104052010.1| hypothetical protein [Arthrobacter sp. DWC3]      114   6e-29
ref|XP_021845829.1| cold shock protein CS66-like [Spinacia olera...    61   2e-07
gb|AAB88628.1| 85 kDa cold acclimation protein [Spinacia oleracea]     59   1e-06
gb|AAA99962.1| cold stress protein, partial [Citrus trifoliata]        55   5e-06

>ref|WP_104052010.1| hypothetical protein [Arthrobacter sp. DWC3]
          Length = 160

 Score =  114 bits (286), Expect = 6e-29
 Identities = 62/95 (65%), Positives = 70/95 (73%), Gaps = 14/95 (14%)
 Frame = -3

Query: 413 GDSVVDKIKDKISATEEKKHHIPAGVGDQHGEKKHNE-------GGDSILDKIKAKIPGG 255
           G SV+DKIK+KISA EEKKHHIP+GV D+HGEKKH E        GDS++DK K KIPGG
Sbjct: 44  GVSVIDKIKEKISAVEEKKHHIPSGV-DEHGEKKHQEEAKKHPEDGDSLVDKAKDKIPGG 102

Query: 254 VGETGEKKHQ-------EGGDSILDKIKAKIPGGV 171
           VGE GEKKHQ       EGGDS++DK K KIPG V
Sbjct: 103 VGENGEKKHQEEVKKNHEGGDSLVDKNKDKIPGRV 137



 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 61/142 (42%), Positives = 67/142 (47%), Gaps = 26/142 (18%)
 Frame = -3

Query: 368 EEKKHHIPAGVGDQHGEKKHNEGGDSILDKIKAKI----------PGGVGETGEKKHQE- 222
           EEKKH   A        KK  EGG S++DKIK KI          P GV E GEKKHQE 
Sbjct: 29  EEKKHLEEA--------KKQPEGGVSVIDKIKEKISAVEEKKHHIPSGVDEHGEKKHQEE 80

Query: 221 ------GGDSILDKIKAKIPGGVXXXXXXXXXXXXXXXXXXXXGDGILDKIKAKIPGGVG 60
                  GDS++DK K KIPGGV                     D ++DK K KIPG VG
Sbjct: 81  AKKHPEDGDSLVDKAKDKIPGGVGENGEKKHQEEVKKNHEGG--DSLVDKNKDKIPGRVG 138

Query: 59  ENGEK---------EKTHGGSD 21
           ENGEK         EK H  SD
Sbjct: 139 ENGEKKHGEKEEKEEKKHAFSD 160


>ref|XP_021845829.1| cold shock protein CS66-like [Spinacia oleracea]
 gb|KNA13503.1| hypothetical protein SOVF_116360 [Spinacia oleracea]
          Length = 531

 Score = 61.2 bits (147), Expect = 2e-07
 Identities = 47/145 (32%), Positives = 64/145 (44%), Gaps = 20/145 (13%)
 Frame = -3

Query: 410 DSVVDKIKDKISATEEKKHHIPAGVGDQHGEKKHNEGGDSILDKIKAKIPGGVGETGEKK 231
           DSV+DKIKDK+S   E K +        H +++  +GG  +LDKIK K+P G  +    +
Sbjct: 251 DSVLDKIKDKMSGQHEDKKN-----DYHHHQEEEKKGG--VLDKIKDKLP-GQHDADTAR 302

Query: 230 H--------------------QEGGDSILDKIKAKIPGGVXXXXXXXXXXXXXXXXXXXX 111
           H                    +E  DS+LDKIK K+PG                      
Sbjct: 303 HTQQLYPAADHNYNTHHVHQDEENKDSVLDKIKDKLPGQHDDKAAYSQHDHHKHHQEEEN 362

Query: 110 GDGILDKIKAKIPGGVGENGEKEKT 36
             G+LDKIK K+PGG  +    E T
Sbjct: 363 KGGVLDKIKDKLPGGQHDGDIVEHT 387


>gb|AAB88628.1| 85 kDa cold acclimation protein [Spinacia oleracea]
          Length = 535

 Score = 58.5 bits (140), Expect = 1e-06
 Identities = 44/134 (32%), Positives = 60/134 (44%), Gaps = 20/134 (14%)
 Frame = -3

Query: 410 DSVVDKIKDKISATEEKKHHIPAGVGDQHGEKKHNEGGDSILDKIKAKIPGGVGETGEKK 231
           DSV+DKIKDK+S   E K +        H +++  +GG  +LDKIK K+P G  +    +
Sbjct: 251 DSVLDKIKDKMSGQHEDKKN-----DYHHHQEEEKKGG--VLDKIKDKLP-GQHDADTAR 302

Query: 230 H--------------------QEGGDSILDKIKAKIPGGVXXXXXXXXXXXXXXXXXXXX 111
           H                    +E  DS+LDKIK K+PG                      
Sbjct: 303 HTQQLYPAADHNYNTHHVHQDEENKDSVLDKIKDKLPGQHDDKAAYSQHDHHKHHQEEEN 362

Query: 110 GDGILDKIKAKIPG 69
             G+LDKIK K+PG
Sbjct: 363 KGGVLDKIKDKLPG 376


>gb|AAA99962.1| cold stress protein, partial [Citrus trifoliata]
          Length = 179

 Score = 55.1 bits (131), Expect = 5e-06
 Identities = 57/183 (31%), Positives = 75/183 (40%), Gaps = 24/183 (13%)
 Frame = -3

Query: 515 MAGIIPKIKETLXXXXXXXXXXXXXXXXXXXEGAGDSVVDKIKDKISATEEKK---HHIP 345
           MAG+I KI E L                    G G    DK K +  + +      HH  
Sbjct: 1   MAGVIHKIGEALHV------------------GGGQKEEDKSKGEHQSRDHHTTDVHHQQ 42

Query: 344 AGVGDQHGEKKHNEGGDSILDKIKAKIPGGV--------------GETGEKKHQEGGDSI 207
              G +H E +  EG   ++DKIK +IPG                GE  E +H+EG   +
Sbjct: 43  QYHGGEHREGEQKEG---LVDKIKQQIPGAGTADVHHQQQQQYRGGEHREGEHKEG---L 96

Query: 206 LDKIKAKIPG-GVXXXXXXXXXXXXXXXXXXXXGDGILDKIKAKIPG-GVGE-----NGE 48
           +DKIK +IPG G                      +G++DKIK KIPG G GE      GE
Sbjct: 97  VDKIKQQIPGAGTTDVHHQQQQYRGGEHREGEQKEGLVDKIKQKIPGVGGGEGATHAQGE 156

Query: 47  KEK 39
           K+K
Sbjct: 157 KKK 159


Top