BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon21_contig00024558
         (413 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_008799751.1| PREDICTED: RNA polymerase sigma factor sigC ...    93   7e-17
ref|XP_010909938.1| PREDICTED: RNA polymerase sigma factor sigC ...    82   1e-13
ref|XP_010244378.1| PREDICTED: RNA polymerase sigma factor sigC ...    75   1e-11
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor sigC ...    61   3e-07
gb|AKC88686.1| sigma factor [Geranium incanum]                         60   6e-07

>ref|XP_008799751.1| PREDICTED: RNA polymerase sigma factor sigC [Phoenix dactylifera]
          Length = 567

 Score = 93.2 bits (230), Expect = 7e-17
 Identities = 65/145 (44%), Positives = 89/145 (61%), Gaps = 13/145 (8%)
 Frame = +2

Query: 17  KRWAFPIQPSTVPK---------QSHRHSSALRGREASFESGR-STHHVILEGGEV-HQY 163
           KRWAFPIQ S +P          Q H  SS  R REA  E G+ S  H+  E  E+ H+ 
Sbjct: 10  KRWAFPIQ-SPLPTNPCARLLDHQHHPPSSFFRVREAFSEPGKVSLQHLFTERVELLHRD 68

Query: 164 TSKVYRCYSGALHNIESTSVYEESSKIN-DMEFYSGSYNSSRPITMME-DTSAYVASLRS 337
           TSK   C   A  +IE+ S   +++++N D +   G+++ +RPI MME D+SAY A L +
Sbjct: 69  TSKACVCSFEAPQSIENMSA--DANEVNMDRKLLRGAHDLNRPINMMENDSSAYHARLTA 126

Query: 338 SSKLQFSLLMENLDKIEDILGGTDM 412
           SS LQ++LLMENLD+IED+  GTD+
Sbjct: 127 SSSLQYNLLMENLDRIEDVFAGTDL 151


>ref|XP_010909938.1| PREDICTED: RNA polymerase sigma factor sigC [Elaeis guineensis]
          Length = 563

 Score = 82.4 bits (202), Expect = 1e-13
 Identities = 59/142 (41%), Positives = 80/142 (56%), Gaps = 10/142 (7%)
 Frame = +2

Query: 17  KRWAFPIQPSTVPKQ-----SHRHS--SALRGREASFESGR-STHHVILEGGEV-HQYTS 169
           KRWAFPIQ             H H   S  R RE SFE G+ S+  +  E  E+ H+ T 
Sbjct: 10  KRWAFPIQSPLATNPCARLLDHHHPPPSFFRVREVSFELGKVSSQRLFTERVELLHRDTL 69

Query: 170 KVYRCYSGALHNIESTSVYEESSKINDMEFYSGSYNSSRPITMME-DTSAYVASLRSSSK 346
           K Y C   A  +IE+ S   ++ K+N           +RPI M+E D+S+Y A L++SS 
Sbjct: 70  KAYVCSFEAPQSIENMSA--DACKVN---IDKKLLKENRPINMIEEDSSSYNARLKASSS 124

Query: 347 LQFSLLMENLDKIEDILGGTDM 412
           LQ+SLLMENL++IED+  GTD+
Sbjct: 125 LQYSLLMENLERIEDVFAGTDL 146


>ref|XP_010244378.1| PREDICTED: RNA polymerase sigma factor sigC [Nelumbo nucifera]
           gi|720088207|ref|XP_010244379.1| PREDICTED: RNA
           polymerase sigma factor sigC [Nelumbo nucifera]
          Length = 558

 Score = 75.5 bits (184), Expect = 1e-11
 Identities = 52/136 (38%), Positives = 74/136 (54%), Gaps = 5/136 (3%)
 Frame = +2

Query: 20  RWAFPIQPSTVPKQSHR-HSSALRGREASFESGRSTH-HVILEGGEVHQYTS-KVYRCYS 190
           +W FP+Q   +   S R HSS +R REA FES R +   VI E  E  Q    K Y C S
Sbjct: 8   KWVFPVQSHLLSHSSTRNHSSFVRSREAYFESARMSFLSVIPEESETLQKDPLKAYACSS 67

Query: 191 GALHNIESTSVYEESSKINDMEFYSGSYNSSRPITMM--EDTSAYVASLRSSSKLQFSLL 364
           G L  + +             EF++  Y++   I++   ED+SA++ASL++     FSLL
Sbjct: 68  GTLQPVNNGYAAIGVKMNTSKEFHNSLYDTFEDISIATPEDSSAFLASLQARKISCFSLL 127

Query: 365 MENLDKIEDILGGTDM 412
           MEN++KIEDI   +D+
Sbjct: 128 MENVEKIEDIFVSSDL 143


>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor sigC [Vitis vinifera]
           gi|296081598|emb|CBI20603.3| unnamed protein product
           [Vitis vinifera]
          Length = 561

 Score = 61.2 bits (147), Expect = 3e-07
 Identities = 50/139 (35%), Positives = 74/139 (53%), Gaps = 8/139 (5%)
 Frame = +2

Query: 20  RWAFPIQ-PSTVPKQSHRHSSALRGREASFESGR-STHHVILEGGE-VHQYTSKVYRCYS 190
           +W FPI  P+     S   +S+++G+EASF+S R S   V  E  E +++   K + C S
Sbjct: 10  KWDFPISCPTLTNSPSRLCTSSVQGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSS 69

Query: 191 GALHNIESTSVYEESSKINDMEFYSGSY-----NSSRPITMMEDTSAYVASLRSSSKLQF 355
           GAL   E+     E+ K+   +   G        S  PI   ED SA VA L++S   QF
Sbjct: 70  GALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNASQAPIG--EDISASVAGLQASKASQF 127

Query: 356 SLLMENLDKIEDILGGTDM 412
           SLL+ENLD +E++   ++M
Sbjct: 128 SLLLENLDILEEMFADSNM 146


>gb|AKC88686.1| sigma factor [Geranium incanum]
          Length = 551

 Score = 60.1 bits (144), Expect = 6e-07
 Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 2/126 (1%)
 Frame = +2

Query: 20  RWAFPIQPSTVPKQSHRHSSALRGREASFESGRSTHHVIL--EGGEVHQYTSKVYRCYSG 193
           +W FPI   ++P    +    +RGRE SF   R     ++  EG   H+   K Y   S 
Sbjct: 12  KWDFPIHSHSLPTSPFKLPPPVRGRETSFSGTRWLFLPVISEEGENSHRELLKAYSSSSA 71

Query: 194 ALHNIESTSVYEESSKINDMEFYSGSYNSSRPITMMEDTSAYVASLRSSSKLQFSLLMEN 373
           A   ++     +E   + D++   GSYN  R    M + S+  ASL ++   QF+LLMEN
Sbjct: 72  APQTLD-----DEFLGLGDIQINKGSYNGRRS---MIEVSSSQASLHATKPAQFNLLMEN 123

Query: 374 LDKIED 391
           L+ +E+
Sbjct: 124 LNVLEE 129